Query psy333
Match_columns 70
No_of_seqs 109 out of 357
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ekg_A Proline dehydrogenase/d 99.2 2.4E-12 8.1E-17 95.3 2.3 36 2-39 285-320 (327)
2 1k87_A PUTA, proline dehydroge 99.1 1.2E-11 4.2E-16 98.8 3.1 36 5-40 533-571 (669)
3 3e2q_A Proline oxidase, prolin 99.1 2E-11 6.8E-16 96.1 3.8 35 5-39 448-485 (551)
4 4h6q_A Proline dehydrogenase; 99.1 1.2E-11 4.1E-16 91.1 2.3 31 2-34 270-300 (312)
5 3haz_A Proline dehydrogenase; 99.1 4.1E-11 1.4E-15 98.6 2.4 38 2-39 431-473 (1001)
6 4f9i_A Proline dehydrogenase/d 99.0 5.3E-11 1.8E-15 98.2 2.5 32 2-33 418-449 (1026)
7 1ezj_A Nucleocapsid phosphopro 48.5 32 0.0011 22.2 4.4 30 25-55 64-93 (115)
8 1eyh_A Epsin; superhelix of he 37.3 24 0.00081 22.9 2.6 42 14-63 18-59 (144)
9 1inz_A EPS15-interacting porte 34.3 26 0.00088 22.8 2.4 43 13-63 35-77 (148)
10 1p90_A NAFY protein, hypotheti 33.0 14 0.00049 23.5 0.9 24 2-25 84-107 (145)
11 1eo1_A Hypothetical protein MT 28.8 19 0.00065 21.6 1.0 23 2-25 82-104 (124)
12 1rdu_A Conserved hypothetical 28.1 21 0.00073 21.1 1.1 23 2-25 79-101 (116)
13 1o13_A Probable NIFB protein; 27.9 18 0.00062 22.6 0.8 23 2-25 93-115 (136)
14 1m46_B IQ4, IQ4 motif from MYO 27.5 60 0.0021 15.7 2.7 14 42-55 9-22 (26)
15 2yx6_A Hypothetical protein PH 26.8 20 0.0007 21.4 0.8 23 2-25 80-102 (121)
16 3fyr_A Sporulation inhibitor S 25.1 37 0.0013 18.7 1.6 17 41-57 26-42 (48)
17 1x9t_B N-terminl peptide of fi 21.3 31 0.0011 17.0 0.7 11 59-69 9-19 (26)
18 4fx0_A Probable transcriptiona 20.9 42 0.0014 20.4 1.5 15 17-31 2-16 (148)
No 1
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A*
Probab=99.23 E-value=2.4e-12 Score=95.33 Aligned_cols=36 Identities=36% Similarity=0.734 Sum_probs=27.9
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHhHHHHHhh
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATENKGVLEKI 39 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN~~~l~~~ 39 (70)
|+++||+|+||+|||+ +|+|||+||+.||.+.++-.
T Consensus 285 L~~~g~~vr~YvP~G~--~~~~YLvRRl~EN~an~~f~ 320 (327)
T 2ekg_A 285 LAREGYTVRAYVPYGR--DWYPYLTRRIAERPENLLLV 320 (327)
T ss_dssp HHHTTCEEEEEEEEET--THHHHHHHHHHHC-------
T ss_pred HHhCCCCEEEEEEEcc--chHHHHHHHHhHChHHHHHH
Confidence 6788999999999999 99999999999998776643
No 2
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional protein, transcripti repressor, shuttling, dimer, oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli} SCOP: a.176.1.1 c.1.23.2
Probab=99.15 E-value=1.2e-11 Score=98.81 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=32.5
Q ss_pred cCCceeEEeeccChhhhHHHHHHHHHHh---HHHHHhhH
Q psy333 5 AGYSAYKYIPYGPVNEVLPYLSRRATEN---KGVLEKIS 40 (70)
Q Consensus 5 ~G~~V~KYvPyG~v~e~lpYL~RRA~EN---~~~l~~~~ 40 (70)
+||+|+||+|||+++||+|||+||+.|| .+++.+..
T Consensus 533 ~G~~vr~YvP~G~~~d~l~YLvRRl~EN~an~sFv~~~~ 571 (669)
T 1k87_A 533 LNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIA 571 (669)
T ss_dssp CCCCEEEEEEECCGGGTHHHHHHHHHHHHCTTSHHHHTT
T ss_pred CCCCeEEEeeCCchHHHHHHHHHHHHhccchhHHHHHhh
Confidence 7999999999999999999999999999 57776653
No 3
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein, multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A {Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A* 1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Probab=99.14 E-value=2e-11 Score=96.13 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=31.3
Q ss_pred cCCceeEEeeccChhhhHHHHHHHHHHh---HHHHHhh
Q psy333 5 AGYSAYKYIPYGPVNEVLPYLSRRATEN---KGVLEKI 39 (70)
Q Consensus 5 ~G~~V~KYvPyG~v~e~lpYL~RRA~EN---~~~l~~~ 39 (70)
.||+|+||+|||+++||+|||+||+.|| .+++.+.
T Consensus 448 ~G~~vr~YvPyG~~~e~lpYLvRRl~EN~aN~sFv~~~ 485 (551)
T 3e2q_A 448 LNRPCRISAPVGTHETLLAYLVRRLLENGANTSFVNRI 485 (551)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHHHHCTTSHHHHT
T ss_pred CCCCeEEEeecCchHHHHHHHHHHHHhcchhHHHHHHh
Confidence 6999999999999999999999999999 5556554
No 4
>4h6q_A Proline dehydrogenase; BETA8-alpha8-barrel, flavoenzyme, oxidoreductase; HET: FAD; 1.36A {Deinococcus radiodurans} PDB: 4h6r_A*
Probab=99.14 E-value=1.2e-11 Score=91.07 Aligned_cols=31 Identities=35% Similarity=0.707 Sum_probs=28.4
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHhHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATENKG 34 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN~~ 34 (70)
|+++||+|+||+|||+ ||+|||+||+.||..
T Consensus 270 L~~~g~~vr~YvP~G~--~~~~YL~RRl~EN~a 300 (312)
T 4h6q_A 270 LAAEGYRVRVYLPYGR--DWYAYFSRRIAETPR 300 (312)
T ss_dssp HHHTTCCEEEEEEESS--CCHHHHHHHHHTCC-
T ss_pred HHhcCCCEEEEeEEcc--chHHHHHHHHHhchH
Confidence 6788999999999999 999999999999964
No 5
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=99.06 E-value=4.1e-11 Score=98.64 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=32.8
Q ss_pred cccc--CCceeEEeeccChhhhHHHHHHHHHHh---HHHHHhh
Q psy333 2 AGQA--GYSAYKYIPYGPVNEVLPYLSRRATEN---KGVLEKI 39 (70)
Q Consensus 2 L~~~--G~~V~KYvPyG~v~e~lpYL~RRA~EN---~~~l~~~ 39 (70)
|+++ ||+|+||+|||+++||+|||+||++|| .+++.+.
T Consensus 431 L~~~~~g~~vr~YvP~G~~~e~l~YLvRRl~EN~an~sf~~~~ 473 (1001)
T 3haz_A 431 LAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQA 473 (1001)
T ss_dssp HHHHCTTCCEEEEEEEEEGGGHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHhhcCCCCEEEEeeCCcHHHhHHHHHHHHHhccchHHHHHHh
Confidence 4455 999999999999999999999999999 5566654
No 6
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=99.04 E-value=5.3e-11 Score=98.16 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=30.2
Q ss_pred ccccCCceeEEeeccChhhhHHHHHHHHHHhH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSRRATENK 33 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~RRA~EN~ 33 (70)
|+++||+|+||+|||++.+|||||+||++||.
T Consensus 418 L~~~g~~vr~YvP~G~~~~~l~YLvRRl~EN~ 449 (1026)
T 4f9i_A 418 ILKVAGRIRLYAPYGNMVPGMGYLVRRLLENT 449 (1026)
T ss_dssp HHHHTCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEEeccccccHHHHHHHHhhcc
Confidence 67789999999999999999999999999994
No 7
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=48.53 E-value=32 Score=22.15 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHhhc
Q psy333 25 LSRRATENKGVLEKISKEKKLLRQEILRRIK 55 (70)
Q Consensus 25 L~RRA~EN~~~l~~~~~e~~~l~~El~RR~~ 55 (70)
+.|..+||...+.+...|-.-++ |+.||+.
T Consensus 64 ~~~kv~en~~~L~QIQ~ei~s~r-d~hkR~~ 93 (115)
T 1ezj_A 64 SARKVDENKQLLKQIQESVESFR-DIYKRFS 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 67888999999999888877765 8888864
No 8
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=37.33 E-value=24 Score=22.88 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=30.3
Q ss_pred eccChhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhcCCCccccc
Q psy333 14 PYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTP 63 (70)
Q Consensus 14 PyG~v~e~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~~~~~~~~~p 63 (70)
||||....|-.+++-+-. ..+...+.+-|++|+......|..
T Consensus 18 ~wGP~~~~m~eIa~~T~~--------~~~~~~Im~~l~kRL~d~~k~Wr~ 59 (144)
T 1eyh_A 18 PWGPSSSLMSEIADLTYN--------VVAFSEIMSMIWKRLNDHGKNWRH 59 (144)
T ss_dssp SSCCCHHHHHHHHHHTTS--------HHHHHHHHHHHHHHHSCCGGGHHH
T ss_pred CCCCCHHHHHHHHHHhCC--------HhhHHHHHHHHHHHHccCCcchHH
Confidence 899999888888775432 256677888999998765445544
No 9
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=34.26 E-value=26 Score=22.85 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=31.3
Q ss_pred eeccChhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhcCCCccccc
Q psy333 13 IPYGPVNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSGKLFYTP 63 (70)
Q Consensus 13 vPyG~v~e~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~~~~~~~~~p 63 (70)
=||||....|-.+.+-+.. ..+...+.+-|++|+......|+.
T Consensus 35 d~wGP~~~~m~eIa~~T~~--------~~~~~eIm~~l~kRL~d~~k~WR~ 77 (148)
T 1inz_A 35 DPWGPSSSLMSEIADLTYN--------VVAFSEIMSMIWKRLNDHGKNWRH 77 (148)
T ss_dssp CSCCCCSCHHHHHHHHHTS--------SHHHHHHHHHHHHGGGCCSSCTHH
T ss_pred CCCCcCHHHHHHHHHHhCC--------HhhHHHHHHHHHHHHccCCcchhH
Confidence 3899999998888775533 246678889999998765445554
No 10
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=33.01 E-value=14 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=20.4
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.++|..||+-..-|++++++-+|
T Consensus 84 L~~~GI~v~~~~~~~~i~eal~~l 107 (145)
T 1p90_A 84 VVRAGIHPLKKPKGCAAQEAIAEL 107 (145)
T ss_dssp HHHTTCEEEECTTCEEHHHHHHHH
T ss_pred HHHcCCEEEEeCCCCCHHHHHHHH
Confidence 567899999987789999999665
No 11
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=28.82 E-value=19 Score=21.64 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.7
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.++|.+||+-. -|+++|++--+
T Consensus 82 L~~~GI~v~~~~-~~~i~eal~~~ 104 (124)
T 1eo1_A 82 LNELGIKIYRAT-GTSVEENLKLF 104 (124)
T ss_dssp HHHHTCEEEECC-SCCHHHHHHHH
T ss_pred HHHCCCEEEEcC-CCCHHHHHHHH
Confidence 567799999974 49999887644
No 12
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=28.09 E-value=21 Score=21.11 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=18.0
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.++|.+||+- .-|+++|++--+
T Consensus 79 L~~~GI~v~~~-~~~~i~eal~~~ 101 (116)
T 1rdu_A 79 LKAAGVKVYRF-EGGTVQEAIDAF 101 (116)
T ss_dssp HHTTTCEEECC-CSCBHHHHHHHH
T ss_pred HHHCCCEEEEC-CCCCHHHHHHHH
Confidence 56789999997 459999987644
No 13
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=27.91 E-value=18 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=18.7
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.++|.+||+-. -|+++|++--+
T Consensus 93 L~~~GI~v~~~~-~g~i~eal~~~ 115 (136)
T 1o13_A 93 FEAMGVKVIKGA-SGTVEEVVNQY 115 (136)
T ss_dssp HHHTTCEEECSC-CSBHHHHHHHH
T ss_pred HHHCCCEEEecC-CCCHHHHHHHH
Confidence 667899999875 49999998655
No 14
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=27.47 E-value=60 Score=15.71 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhc
Q psy333 42 EKKLLRQEILRRIK 55 (70)
Q Consensus 42 e~~~l~~El~RR~~ 55 (70)
-.+.+++||+.|-+
T Consensus 9 lqkkirkelkqrql 22 (26)
T 1m46_B 9 LQKKIRKELKQRQL 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34578888887743
No 15
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.84 E-value=20 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.9
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.++|.+||+- .-|+++|++--+
T Consensus 80 L~~~GI~v~~~-~~~~v~eal~~~ 102 (121)
T 2yx6_A 80 FNSLGISVVTG-VYGRISDVIKAF 102 (121)
T ss_dssp HHHTTCEEECS-BCSBHHHHHHHH
T ss_pred HHHCCCEEEEC-CCCCHHHHHHHH
Confidence 56789999986 459999988654
No 16
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=25.06 E-value=37 Score=18.73 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhcCC
Q psy333 41 KEKKLLRQEILRRIKSG 57 (70)
Q Consensus 41 ~e~~~l~~El~RR~~~~ 57 (70)
+=-++|..||.||-...
T Consensus 26 dFI~LL~~Ei~RR~L~~ 42 (48)
T 3fyr_A 26 DFIELIENEIKRRSLGH 42 (48)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCcc
Confidence 33468999999997654
No 17
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=21.28 E-value=31 Score=16.97 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=8.5
Q ss_pred cccccCCCCcC
Q psy333 59 LFYTPKGHYTP 69 (70)
Q Consensus 59 ~~~~p~~~~~~ 69 (70)
.-++|++||-+
T Consensus 9 ddFnPVYPYd~ 19 (26)
T 1x9t_B 9 DTFNPVYPYDT 19 (26)
T ss_pred ccCcccccCCC
Confidence 35899999854
No 18
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=20.91 E-value=42 Score=20.44 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.1
Q ss_pred ChhhhHHHHHHHHHH
Q psy333 17 PVNEVLPYLSRRATE 31 (70)
Q Consensus 17 ~v~e~lpYL~RRA~E 31 (70)
+.++|+-|.+|||..
T Consensus 2 ~~d~cl~f~l~ra~r 16 (148)
T 4fx0_A 2 AFDECACYTTRRAAR 16 (148)
T ss_dssp CCTTCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 347999999999854
Done!