Query psy333
Match_columns 70
No_of_seqs 109 out of 357
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 22:11:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy333.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/333hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tj1a2 c.1.23.2 (A:262-610) P 99.4 1.1E-13 8.1E-18 100.1 4.0 29 6-34 273-301 (349)
2 d2iw1a1 c.87.1.8 (A:2-371) Lip 43.6 4.3 0.00031 24.6 1.3 26 7-32 4-29 (370)
3 d1b74a1 c.78.2.1 (A:1-105) Glu 39.2 7.4 0.00054 22.9 1.9 26 11-38 35-60 (105)
4 d1p90a_ c.55.5.2 (A:) NafY cor 33.9 6.4 0.00047 22.5 0.9 26 2-27 84-109 (123)
5 d1rdua_ c.55.5.1 (A:) Hypothet 27.5 7.4 0.00054 21.8 0.4 23 2-25 79-101 (116)
6 d1o13a_ c.55.5.1 (A:) Hypothet 25.0 9 0.00065 21.0 0.4 21 2-23 81-101 (107)
7 d2bpta1 a.118.1.1 (A:1-861) Im 21.9 31 0.0023 22.9 2.8 35 20-54 825-859 (861)
8 d1gjja2 a.140.1.1 (A:111-153) 19.1 30 0.0022 17.3 1.8 19 48-69 8-26 (43)
9 d1pv0a_ a.2.12.1 (A:) Sporulat 16.7 43 0.0031 17.1 2.0 15 44-58 27-41 (46)
10 d1eo1a_ c.55.5.1 (A:) Hypothet 16.6 18 0.0013 20.2 0.5 22 2-24 82-103 (124)
No 1
>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]}
Probab=99.37 E-value=1.1e-13 Score=100.15 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=28.0
Q ss_pred CCceeEEeeccChhhhHHHHHHHHHHhHH
Q psy333 6 GYSAYKYIPYGPVNEVLPYLSRRATENKG 34 (70)
Q Consensus 6 G~~V~KYvPyG~v~e~lpYL~RRA~EN~~ 34 (70)
||+|+||+||||++||+|||+||++||.+
T Consensus 273 g~~v~~YvP~G~~~e~~pYL~RRl~EN~a 301 (349)
T d1tj1a2 273 NRPCRIYAPVGTHETLLAYLVRRLLENGA 301 (349)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHHHC
T ss_pred CcceEEEEeecchHHhHHHHHHHHhhccc
Confidence 99999999999999999999999999974
No 2
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=43.64 E-value=4.3 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.562 Sum_probs=20.9
Q ss_pred CceeEEeeccChhhhHHHHHHHHHHh
Q psy333 7 YSAYKYIPYGPVNEVLPYLSRRATEN 32 (70)
Q Consensus 7 ~~V~KYvPyG~v~e~lpYL~RRA~EN 32 (70)
|-+|+|-|||=++..+-.|.+...+.
T Consensus 4 f~~~~y~p~GG~e~~~~~la~~L~~~ 29 (370)
T d2iw1a1 4 FCLYKYFPFGGLQRDFMRIASTVAAR 29 (370)
T ss_dssp EECSEECTTCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHC
Confidence 56889999999988888888776553
No 3
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=39.18 E-value=7.4 Score=22.86 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEeeccChhhhHHHHHHHHHHhHHHHHh
Q psy333 11 KYIPYGPVNEVLPYLSRRATENKGVLEK 38 (70)
Q Consensus 11 KYvPyG~v~e~lpYL~RRA~EN~~~l~~ 38 (70)
+++|||. ..-..+.+|+.+..+.+..
T Consensus 35 a~~PYG~--ks~~~I~~~~~~~~~~l~~ 60 (105)
T d1b74a1 35 ARVPYGI--RSKDTIIRYSLECAGFLKD 60 (105)
T ss_dssp GGCCGGG--SCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 4689999 7778899999998887764
No 4
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=33.94 E-value=6.4 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=20.8
Q ss_pred ccccCCceeEEeeccChhhhHHHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYLSR 27 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL~R 27 (70)
|.++|..|++-.+-.++++++-+|..
T Consensus 84 L~~~GI~vi~~~~~~~ie~al~~l~~ 109 (123)
T d1p90a_ 84 VVRAGIHPLKKPKGCAAQEAIAELQT 109 (123)
T ss_dssp HHHTTCEEEECTTCEEHHHHHHHHHH
T ss_pred HHHCCcEEEEeCCCCcHHHHHHHHHH
Confidence 56789999987777789999988754
No 5
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga maritima [TaxId: 2336]}
Probab=27.48 E-value=7.4 Score=21.82 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=17.6
Q ss_pred ccccCCceeEEeeccChhhhHHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPYL 25 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpYL 25 (70)
|.++|.+||.-. -|+++|++--+
T Consensus 79 L~~~GI~v~~~~-~~~v~eal~~~ 101 (116)
T d1rdua_ 79 LKAAGVKVYRFE-GGTVQEAIDAF 101 (116)
T ss_dssp HHTTTCEEECCC-SCBHHHHHHHH
T ss_pred HHHCCCEEEEcC-CCCHHHHHHHH
Confidence 667899999844 58999888543
No 6
>d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga maritima [TaxId: 2336]}
Probab=25.01 E-value=9 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=16.3
Q ss_pred ccccCCceeEEeeccChhhhHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLP 23 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lp 23 (70)
|.++|.+||. .+-|+++|++-
T Consensus 81 L~~~GI~v~~-~~~g~v~eal~ 101 (107)
T d1o13a_ 81 FEAMGVKVIK-GASGTVEEVVN 101 (107)
T ss_dssp HHHTTCEEEC-SCCSBHHHHHH
T ss_pred HHHCCCEEEE-cCCCCHHHHHH
Confidence 5678999985 45689998874
No 7
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.85 E-value=31 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhh
Q psy333 20 EVLPYLSRRATENKGVLEKISKEKKLLRQEILRRI 54 (70)
Q Consensus 20 e~lpYL~RRA~EN~~~l~~~~~e~~~l~~El~RR~ 54 (70)
+++..|++++.++.+.-.+++.--+-.+.++++|+
T Consensus 825 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (861)
T d2bpta1 825 DWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHh
Confidence 67788899999999877777777777778888886
No 8
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.06 E-value=30 Score=17.30 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=12.9
Q ss_pred HHHHHhhcCCCcccccCCCCcC
Q psy333 48 QEILRRIKSGKLFYTPKGHYTP 69 (70)
Q Consensus 48 ~El~RR~~~~~~~~~p~~~~~~ 69 (70)
.||+.++..... |.||+++
T Consensus 8 ~eLr~~L~~~G~---~~GPIt~ 26 (43)
T d1gjja2 8 EDLLDQLVKYGV---NPGPIVG 26 (43)
T ss_dssp HHHHHEEEBTTC---CCCCCCS
T ss_pred HHHHHHHHHcCC---CCCCcCc
Confidence 578888776554 6666664
No 9
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=16.71 E-value=43 Score=17.12 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhcCCC
Q psy333 44 KLLRQEILRRIKSGK 58 (70)
Q Consensus 44 ~~l~~El~RR~~~~~ 58 (70)
.++..||.||-++..
T Consensus 27 ~Lie~Ei~RRsL~hk 41 (46)
T d1pv0a_ 27 ELIENEIKRRSLGHI 41 (46)
T ss_dssp HHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHhhhhh
Confidence 488999999987644
No 10
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.61 E-value=18 Score=20.23 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=16.6
Q ss_pred ccccCCceeEEeeccChhhhHHH
Q psy333 2 AGQAGYSAYKYIPYGPVNEVLPY 24 (70)
Q Consensus 2 L~~~G~~V~KYvPyG~v~e~lpY 24 (70)
|.++|.+||.- .-|+++|+|--
T Consensus 82 L~~~GI~v~~~-~~~~v~eal~~ 103 (124)
T d1eo1a_ 82 LNELGIKIYRA-TGTSVEENLKL 103 (124)
T ss_dssp HHHHTCEEEEC-CSCCHHHHHHH
T ss_pred HHHCCCEEEEc-CCCCHHHHHHH
Confidence 56789999974 46899888764
Done!