RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy333
         (70 letters)



>d1tj1a2 c.1.23.2 (A:262-610) Proline dehydrohenase domain of
           bifunctional PutA protein {Escherichia coli [TaxId:
           562]}
          Length = 349

 Score = 45.6 bits (107), Expect = 4e-08
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 3   GQAGYSAYKYIPYGPVNEVLPYLSRRATEN 32
           G+       Y P G    +L YL RR  EN
Sbjct: 270 GKLNRPCRIYAPVGTHETLLAYLVRRLLEN 299


>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
           carotovorum [TaxId: 554]}
          Length = 296

 Score = 27.2 bits (59), Expect = 0.12
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 18  VNEVLPYLSRRATENKGVLEKISKEKKLLRQEILRRIKSG 57
            + + P       E K +L + +   +LL ++I+ R K G
Sbjct: 201 CHALHPDYKIFDNEVKNILREYADSLQLLPKDIVWRKKIG 240


>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase,
          VHR {Human (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 23.6 bits (50), Expect = 2.4
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 13 IPYGPVNEVLPYL---SRRATENKGVLEK 38
          +P  P NEV P +   +    ++   L+K
Sbjct: 18 LPSQPCNEVTPRIYVGNASVAQDIPKLQK 46


>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
          {Sulfolobus tokodaii [TaxId: 111955]}
          Length = 224

 Score = 23.2 bits (49), Expect = 3.9
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 47 RQEILRRIKSGKLFY----TPKGHYTP 69
          ++EILR+IK+ +L        +  + P
Sbjct: 4  KEEILRKIKTQELAEAFNKVDRSLFLP 30


>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
          [TaxId: 9606]}
          Length = 96

 Score = 21.9 bits (46), Expect = 6.9
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 39 ISKEKKLLRQEILRRIKSGKLF 60
            K  K+   E + ++KSG  F
Sbjct: 10 CEKHGKI--MEAMEKLKSGMRF 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,717
Number of extensions: 9812
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 6
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.8 bits)