BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3330
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C D + C++ GL+V+P + +V + L N+ + V LS Y L +DL
Sbjct: 4 CPTECTCLDTVVR--CSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
S N+I+ L + +F +LL L +SYN + + TF GLK L+ L L N ISV+ + A
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 142 FRDTLHLELLILSFN 156
F D L L + N
Sbjct: 122 FNDLSALSHLAIGAN 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 376 LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P 434
+ ++ ++F + QL T+I++ N L+ +P + F G +L+ +SL GN +S + F
Sbjct: 66 ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124
Query: 435 LERISFLDLSDNPLHCDCN 453
L +S L + NPL+CDCN
Sbjct: 125 LSALSHLAIGANPLYCDCN 143
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 28/331 (8%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
E + LDL N+I +N+ F HLE L L+ N ++ E F++L +LR L L +N+
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR 91
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXX 242
+ +P V + L +L L ++EN I +LD F L NL +L +
Sbjct: 92 LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 148
Query: 243 VTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
L +L +IPT+ LS L L+ L L N + I +FK L+ LK+++I+
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 303 LIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
P LD++ +LT L C N + + +A + L
Sbjct: 209 HWPYLDTM-------------TPNCLYGLNLTSLSITHC--------NLTAVPYLAVRHL 247
Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
L+ + ++ P + +I+ + ++L+ + + L + F+G L+ +++ G
Sbjct: 248 VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDC 452
N L+ LE S F + + L L NPL CDC
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLACDC 336
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 5/281 (1%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLD 80
CP RC+C Q C VP + E + + L +NRI ++ + + L L+
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
L+ N ++ + F L L + N + + F GL L LD+S NKI ++
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
F+D +L+ L + N++ Y FS L SL L L+ + +P LS+L L
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL--HGLI 179
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXA 260
L L I + D SF L L L + + L A
Sbjct: 180 VLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
+P + L L L+LS N S I+ L L+ +++
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
LN+SYN IS + L L+ + L +++V+ AFR +L +L +S N +T E
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 163 DSEIFSSLKSLRILKLDNNQI 183
+S +F S+ +L L LD+N +
Sbjct: 313 ES-VFHSVGNLETLILDSNPL 332
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
+ LR L+LS N I+ + +L + + +++ + F+GL L+ L++S N+
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 134 ISVINKTAFRDTLHLELLILSFN 156
++ + ++ F +LE LIL N
Sbjct: 308 LTTLEESVFHSVGNLETLILDSN 330
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 22 CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
CP C C+++ K+ SC GL+ VP + Q I L NRIS Y+ S
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRIS--------YVPAASFQ 52
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINK 139
S + +L H+ N ++ + F GL L+ LDLS N ++ V++
Sbjct: 53 -SCRNLTILWLHS--------------NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
T FR HL L L + +F L +L+ L L +N + +P+N +L +L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNNLQALPDNTFRDL--GNL 154
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTL 227
+L+L+ N I +V +++F LH+L
Sbjct: 155 THLFLHGNRIPSVPEHAF----RGLHSL 178
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L+ L L N + L + F L +L + N I ++ + F+GL L L L N ++
Sbjct: 130 LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
++ AFRD L L L NN++ +E+ L+SL+ L+L++N
Sbjct: 190 RVHPHAFRDLGRLMTLYLFANNLSMLP-AEVLVPLRSLQYLRLNDN 234
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 11/199 (5%)
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQXXXXXXXX 320
+P L L L N + ID+ AF L L+ + ++ L +D
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 321 XXXXXXXXXAFS-LTP---LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLK--LVKINLIP 374
L P G L L NN + F+ L +L + N IP
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF- 433
S+ + AF L+ +++++N + P F+ L ++ L N+LS L A
Sbjct: 166 ---SVPEHAFRGLHSLDRLLLHQNHVARVHPHA-FRDLGRLMTLYLFANNLSMLPAEVLV 221
Query: 434 PLERISFLDLSDNPLHCDC 452
PL + +L L+DNP CDC
Sbjct: 222 PLRSLQYLRLNDNPWVCDC 240
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 22 CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
CP C C+++ K+ SC GL+ VP+ + Q I L NRIS H + + R+L
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS--HVPAASFRACRNLT 58
Query: 81 LSVNKINVLG---SHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYNKISV 136
+ NVL + F L L++S N ++ ++ TF GL L TL L +
Sbjct: 59 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 118
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH 196
+ FR L+ L L N + D + F L +L L L N+I VP L
Sbjct: 119 LGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGL-- 175
Query: 197 QSLHYLYLNENLIETVLDNSF 217
SL L L++N + V ++F
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAF 196
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L+ L L N + L F L +L + N IS++ + F+GL L L L N+++
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
++ AFRD L L L NN++ +E + L++L+ L+L++N
Sbjct: 190 HVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDN 234
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 45/217 (20%)
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQXXXXXXXX 320
+P L L L N + ID+ AF L L+ + ++ L S+D
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF----- 100
Query: 321 XXXXXXXXXAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPN 375
L L TL DR L + F+ L +L+ + + +P+
Sbjct: 101 ----------HGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYLQDNALQALPD 145
Query: 376 ------------------LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
+ S+ +RAF L+ +++++N + + F+ L +
Sbjct: 146 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMT 204
Query: 418 VSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN 453
+ L N+LS L PL + +L L+DNP CDC
Sbjct: 205 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 241
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 22 CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
CP C C+++ K+ SC GL+ VP+ + Q I L NRIS H + + R+L
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS--HVPAASFRACRNLT 59
Query: 81 LSVNKINVLG---SHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYNKISV 136
+ NVL + F L L++S N ++ ++ TF GL L TL L +
Sbjct: 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH 196
+ FR L+ L L N + D + F L +L L L N+I VP L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGL-- 176
Query: 197 QSLHYLYLNENLIETVLDNSF 217
SL L L++N + V ++F
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAF 197
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L+ L L N + L F L +L + N IS++ + F+GL L L L N+++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
++ AFRD L L L NN++ +E + L++L+ L+L++N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDN 235
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 45/217 (20%)
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQXXXXXXXX 320
+P L L L N + ID+ AF L L+ + ++ L S+D
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF----- 101
Query: 321 XXXXXXXXXAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPN 375
L L TL DR L + F+ L +L+ + + +P+
Sbjct: 102 ----------HGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 376 ------------------LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
+ S+ +RAF L+ +++++N + + F+ L +
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMT 205
Query: 418 VSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN 453
+ L N+LS L PL + +L L+DNP CDC
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 24 SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSV 83
+ C C + K E C L+ VP + + + LDL
Sbjct: 8 TGCTCNEGKKEVDCQGKSLDSVPSGIPADTE-----------------------KLDLQS 44
Query: 84 NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
+ L F KL LN+ YN++ LS F L EL TL L+ N+++ + F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
L+ L L N + S +F L L+ L+L+ NQ+ +P L + L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLS 161
Query: 204 LNENLIETVLDNSFPFTLTNLHTLAL 229
L+ N +++V +F L L T+ L
Sbjct: 162 LSTNQLQSVPHGAFD-RLGKLQTITL 186
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 335 PLGTL----KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQL 390
PLG + D+L L GN ++ S F L LK +++N L SI AF L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNL 157
Query: 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSL 425
+T+ ++ N L+ +P F L++++L GN
Sbjct: 158 QTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
++LDL + + F+ L KL +NL N L ++ F D +L T+ + N
Sbjct: 38 EKLDLQSTGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ- 94
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLH 449
L LP +F T L + L GN L L + F L ++ L L+ N L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 24 SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSV 83
+ C C + K E C L+ VP + + + LDL
Sbjct: 8 TGCTCNEGKKEVDCQGKSLDSVPSGIPADTE-----------------------KLDLQS 44
Query: 84 NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
+ L F KL LN+ YN++ LS F L EL TL L+ N+++ + F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
L+ L L N + S +F L L+ L+L+ NQ+ +P L + L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLS 161
Query: 204 LNENLIETVLDNSFPFTLTNLHTLAL 229
L+ N +++V +F L L T+ L
Sbjct: 162 LSTNQLQSVPHGAFD-RLGKLQTITL 186
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 335 PLGTL----KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQL 390
PLG + D+L L GN ++ S F L LK +++N L SI AF L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNL 157
Query: 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSL 425
+T+ ++ N L+ +P F L++++L GN
Sbjct: 158 QTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
++LDL + + F+ L KL +NL N L ++ F D +L T+ + N
Sbjct: 38 EKLDLQSTGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ- 94
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLH 449
L LP +F T L + L GN L L + F L ++ L L+ N L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 101/330 (30%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ L+L N+I +I +F+ HLE+L LS N+I E F+ L +L L+L +N++
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNRLT 125
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVT 244
+PN L L L+L N IE+
Sbjct: 126 TIPNGAFVYL--SKLKELWLRNNPIES--------------------------------- 150
Query: 245 LRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSG-NNFSNIDSVAFKSLFSLKLVKINL 303
IP+ +++ +L LDL S I AF+ L +L+ + + +
Sbjct: 151 ----------------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 304 IPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLF 363
NL I +LTPL +K D LDLSGN+ S I +F+ L
Sbjct: 195 C-NLREIP--------------------NLTPL--IKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 364 SLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN 423
L+ K+ +I + + +R DN+Q I + NL LP LF
Sbjct: 232 HLQ--KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF-------------T 276
Query: 424 SLSHLEASHFPLERISFLDLSDNPLHCDCN 453
L HLE H L NP +C+C+
Sbjct: 277 PLHHLERIH----------LHHNPWNCNCD 296
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 104/277 (37%), Gaps = 78/277 (28%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPS C C +Q + C L VP ++ R L+L
Sbjct: 35 CPSVCSCSNQFSKVICVRKNLREVPDGISTNT-----------------------RLLNL 71
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N+I ++ ++F++ L L +S N I + F GL L TL+L N+++ I A
Sbjct: 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F Y L L+ L L NN I +P+ + +P SL
Sbjct: 132 F----------------VY---------LSKLKELWLRNNPIESIPSYAFNRIP--SLRR 164
Query: 202 LYLNE-NLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXA 260
L L E + + + +F L+NL L L LR
Sbjct: 165 LDLGELKRLSYISEGAFE-GLSNLRYLNL-----------AMCNLR-------------E 199
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
IP L+ L L LDLSGN+ S I +F+ L L+
Sbjct: 200 IP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 28/186 (15%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPSRC C +E C G VP + QT L DL
Sbjct: 1 CPSRCSCSGTTVE--CYSQGRTSVPTGI--PAQTTYL---------------------DL 35
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N + L + F+ L L + N++ +L F L L L+LS N++ +
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F L+ L L+ N + D +F L L+ L+L NQ+ VP+ V L SL Y
Sbjct: 96 FDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQY 152
Query: 202 LYLNEN 207
++L++N
Sbjct: 153 IWLHDN 158
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNL 401
+L L GN ++ + F L SL +NL N L S+ F QL+ + +N N L
Sbjct: 56 QLYLGGNKLQSLPNGVFNKLTSL--TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-L 112
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDC 452
+ LP +F T LK + L N L + F L + ++ L DNP C C
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
LDL N + + F + L L L N + + +F+ L SL L L NQ+ +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSL 91
Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL 229
PN V L L L LN N ++++ D F LT L L L
Sbjct: 92 PNGVFDKLTQ--LKELALNTNQLQSLPDGVFD-KLTQLKDLRL 131
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
+++ DLS +KI L F + L L ++ NEI+ + + F GL L L+LS N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
I+ F + LE+L LS+N+I D + F L +L+ L LD NQ+ VP+ + L
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDGIFDRL- 394
Query: 196 HQSLHYLYLNEN 207
SL ++L+ N
Sbjct: 395 -TSLQKIWLHTN 405
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 53 VQTIILRENRI-SNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS 111
V+T L +++I + + S + +L L L+ N+IN + + F LL LN+S N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLK 171
++ F+ L +L+ LDLSYN I + +F +L+ L L N + D IF L
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-IFDRLT 395
Query: 172 SLRILKLDNN 181
SL+ + L N
Sbjct: 396 SLQKIWLHTN 405
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 160/406 (39%), Gaps = 61/406 (15%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYNKISVI 137
+DLS+N I L +F L L + + +TF+GL L L L YN+ +
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 138 NKTAFRDTLHLELLILSFNNI-TYFEDSEIFSSLKSLRILKLDNNQILDV-PNNVLSNLP 195
AF +LE+L L+ N+ F L SL +L L +N I + P + N+
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM- 153
Query: 196 HQSLHYLYLNENLIETVLDNSF------PFTLTNLHTLALXXXXXXXXXXXXXVTLRTLH 249
+ H L L N ++++ + FTL L + +TL+ ++
Sbjct: 154 -RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS----------------ITLQDMN 196
Query: 250 XXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309
P K +++ LDLSGN F +S+A + ++ KI + +S
Sbjct: 197 -EYWLGWEKCGNPFKN----TSITTLDLSGNGFK--ESMAKRFFDAIAGTKIQSLILSNS 249
Query: 310 IDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCD---------------------RLDLSG 348
+ L G CD +L L+
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSK 407
N + ID AF L L+K+NL N L SID R F + +LE + ++ N +++ L +
Sbjct: 309 NEINKIDDNAFWGL--THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQ 365
Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDC 452
F G NLK ++L N L + F L + + L NP C C
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 81/269 (30%)
Query: 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPE------------------------VQTI 56
+CP RCQC + ++ C+D GLE VP L P+ + T+
Sbjct: 24 VCPFRCQCHLRVVQ--CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 57 ILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
IL N+IS + + ++L L LS N++ L + L L + NEI+ + K
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRVHENEITKVRK 138
Query: 116 DTFKGLKELKTLDLSYN--KISVINKTAFR-----------DT---------------LH 147
F GL ++ ++L N K S I AF+ DT LH
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 148 LE-------------------LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
L+ L LSFN+I+ ++ + ++ LR L L+NN+++ VP
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPG 257
Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSF 217
+ H+ + +YL+ N I + N F
Sbjct: 258 GLAD---HKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 81/269 (30%)
Query: 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPE------------------------VQTI 56
+CP RCQC + ++ C+D GLE VP L P+ + T+
Sbjct: 24 VCPFRCQCHLRVVQ--CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 57 ILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
IL N+IS + + ++L L LS N++ L + L L + NEI+ + K
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRVHENEITKVRK 138
Query: 116 DTFKGLKELKTLDLSYN--KISVINKTAFR-----------DT---------------LH 147
F GL ++ ++L N K S I AF+ DT LH
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 148 LE-------------------LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
L+ L LSFN+I+ ++ + ++ LR L L+NN+++ VP
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPG 257
Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSF 217
+ H+ + +YL+ N I + N F
Sbjct: 258 GLAD---HKYIQVVYLHNNNISAIGSNDF 283
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 131/347 (37%), Gaps = 111/347 (31%)
Query: 117 TFKGLKEL--------KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS 168
T +GL E+ + L+L N I +I FR HLE+L L N+I E F+
Sbjct: 62 TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FN 120
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
L SL L+L +N + +P+ L L L+L N IE+
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYL--SKLRELWLRNNPIES----------------- 161
Query: 229 LXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSG-NNFSNIDS 287
IP+ +++ +L+ LDL I
Sbjct: 162 --------------------------------IPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 288 VAFKSLFSLKLVKINLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCDRLDLS 347
AF+ LF+LK + + + N+ + +LTPL L + L++S
Sbjct: 190 GAFEGLFNLKYLNLGMC-NIKDMP--------------------NLTPLVGL--EELEMS 226
Query: 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSK 407
GN+F I +F L SLK + +V N Q+ + N
Sbjct: 227 GNHFPEIRPGSFHGLSSLK---------------KLWVMNSQVSLIERNA---------- 261
Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN 453
F G +L ++L N+LS L F PL + L L NP +CDC+
Sbjct: 262 -FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 99/277 (35%), Gaps = 78/277 (28%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPS C C +Q + CT GL VP + SN Y L+L
Sbjct: 46 CPSVCSCSNQFSKVVCTRRGLSEVP-------------QGIPSNTRY----------LNL 82
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N I ++ + F + + L L + N I + F GL L TL+L N ++VI A
Sbjct: 83 MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F L LR L L NN I +P+ + +P SL
Sbjct: 143 FE-------------------------YLSKLRELWLRNNPIESIPSYAFNRVP--SLMR 175
Query: 202 LYLNE-NLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXA 260
L L E +E + + +F L NL L L
Sbjct: 176 LDLGELKKLEYISEGAFE-GLFNLKYLNLGMCNIKD------------------------ 210
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
L+ L L L++SGN+F I +F L SLK
Sbjct: 211 --MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
L+ L + ++++++ + F+ L+ LN+++N +S+L D F L+ L L L +N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 31/218 (14%)
Query: 18 NKAICPSR---CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS---------- 64
N+A+C C C + K C+ L +P + + + + L+ N++S
Sbjct: 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60
Query: 65 ----------NVHYTL--SFYIELRSLD---LSVNKINVLGSHNFEYQNKLLNLNISYNE 109
N TL + EL++L+ ++ NK+ L F+ L L + N+
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 110 ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSS 169
+ +L F L +L L L YN++ + K F L+ L L N + + F
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG-AFDK 179
Query: 170 LKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L L+ LKLDNNQ+ VP +L + L L L EN
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSL--EKLKMLQLQEN 215
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 275 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLT 334
LDL N S++ S AF L L+L+ +N L ++
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 335 PLGT----LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQL 390
P+G + L L N ++ F SL L + + L S+ + F L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSL 159
Query: 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLH 449
+ + + N LK++P F T LK++ L N L + F LE++ L L +NP
Sbjct: 160 KELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Query: 450 CDCN 453
C CN
Sbjct: 219 CTCN 222
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 112/278 (40%), Gaps = 58/278 (20%)
Query: 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
A+CP C C + ++ C+D GL+ VP +++P+ TL
Sbjct: 25 AMCPFGCHCHLRVVQ--CSDLGLKAVPKEISPDT---------------TL--------- 58
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
L++ N+IS L KD FKGL+ L L L NKIS I++
Sbjct: 59 -----------------------LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
AF L+ L +S N++ + + SSL LRI +N+I VP V S L +++
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRI---HDNRIRKVPKGVFSGL--RNM 149
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXX 259
+ + + N +E F L+ L + TL LH
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQ 206
Query: 260 AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
AI + L + S L L L N I++ + L +L+
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L L L NKI + + +KL L + +N+I + + L L+ L L NK+S
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 136 VINKTAFRDTLHLELLILSFNNIT 159
+ D L+++ L NNIT
Sbjct: 255 RV-PAGLPDLKLLQVVYLHTNNIT 277
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSL-KLVKINLIPNLDSIDQRAFVDNIQLETVIINENM--- 399
LDL N+ S + FK L L LV +N + I ++AF +L+ + I++N
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVN--NKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 400 -----------------NLKQLPSKLFQGNTNLKSVSLKGNSL--SHLEASHFPLERISF 440
++++P +F G N+ + + GN L S E F ++++
Sbjct: 117 IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176
Query: 441 LDLSD 445
L +S+
Sbjct: 177 LRISE 181
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
A CPS+C C ++ C VP + Q + L +N+I+ +E
Sbjct: 11 AACPSQCSCSGTTVD--CRSKRHASVPAGIPTNAQILYLHDNQITK--------LEPGVF 60
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
D +N L L + N++ AL F L +L LDL N+++V+
Sbjct: 61 DSLIN---------------LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
F +HL+ L + N +T E L L L LD NQ+ +P+ L +
Sbjct: 106 AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 200 HYLYLN 205
YL+ N
Sbjct: 164 AYLFGN 169
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C + ++ C GL +P L PE T E+R L
Sbjct: 5 CPAACTCSNNIVD--CRGKGLTEIPTNL-PETIT-------------------EIR---L 39
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N I V+ F KL +++S N+IS L+ D F+GL+ L +L L NKI+ + K+
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F L+LL+L+ N I + F L +L +L L +N++ + S P +++
Sbjct: 100 FEGLFSLQLLLLNANKINXLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQT 156
Query: 202 LYLNENLIETVLDNSFPFTLTNLHT 226
++L +N + D + LHT
Sbjct: 157 MHLAQNPF--ICDCHLKWLADYLHT 179
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQRAFVDNIQLETVI 394
K R+DLS N S + AF+ L SL + KI +P + F L+ ++
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP------KSLFEGLFSLQLLL 110
Query: 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN 453
+N N + L FQ NL +SL N L + F PL I + L+ NP CDC+
Sbjct: 111 LNAN-KINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 44 VVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103
V IQ P V+ + L N++ ++ L L L L+ N++ L + F+ L L
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED 163
+ N++ +L F L L L+L++N++ + K F +L L LS+N + +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 164 SEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
+F L L+ L+L NQ+ VP+ V L SL Y++L++N
Sbjct: 175 G-VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWLHDN 215
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C + ++ C GL +P L PE T E+R L
Sbjct: 5 CPAACTCSNNIVD--CRGKGLTEIPTNL-PETIT-------------------EIR---L 39
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N I V+ F KL +++S N+IS L+ D F+GL+ L +L L NKI+ + K+
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F L+LL+L+ N I + F L +L +L L +N++ + S P +++
Sbjct: 100 FEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQT 156
Query: 202 LYLNENLIETVLDNSFPFTLTNLHT 226
++L +N + D + LHT
Sbjct: 157 MHLAQNPF--ICDCHLKWLADYLHT 179
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQRAFVDNIQLETVI 394
K R+DLS N S + AF+ L SL + KI +P + F L+ ++
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP------KSLFEGLFSLQLLL 110
Query: 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN 453
+N N + L FQ NL +SL N L + F PL I + L+ NP CDC+
Sbjct: 111 LNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 33/274 (12%)
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
++ +VP ++ N YL L EN I+ + ++F L +L L L
Sbjct: 25 ELAEVPASIPVNT-----RYLNLQENSIQVIRTDTFKH-LRHLEILQLSKNLVRKIEVGA 78
Query: 242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
L +L+ +PT+ LS L L L N +I S AF + SL+ + +
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 302 NLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTP--LGTLKCDRLDLSGNNFSNIDSVAF 359
+ L+ I + P ++ + L+LSGN I +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
+ L SL+ + + + + +I++ AF D LE + ++ N NL LP LF
Sbjct: 199 QGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHN-NLMSLPHDLFT--------- 247
Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN 453
PL R+ + L+ NP HC+C+
Sbjct: 248 --------------PLHRLERVHLNHNPWHCNCD 267
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 100/280 (35%), Gaps = 84/280 (30%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C +Q CT L VP S + R L+L
Sbjct: 6 CPAACSCSNQASRVICTRRELAEVPA-----------------------SIPVNTRYLNL 42
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N I V+ + F++ L L +S N + + F GL L TL+L N+++ +
Sbjct: 43 QENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV---- 98
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
++ F L LR L L NN I +P+ + +P SL
Sbjct: 99 ---------------------PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLRR 135
Query: 202 LYLNE-NLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXA 260
L L E +E + + +F L NL L L
Sbjct: 136 LDLGELKRLEYISEAAFE-GLVNLRYLNLGMCNL-------------------------- 168
Query: 261 IPTKQLSKLSALVN---LDLSGNNFSNIDSVAFKSLFSLK 297
K + L+ALV L+LSGN I +F+ L SL+
Sbjct: 169 ---KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 33/274 (12%)
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
++ +VP ++ N YL L EN I+ + ++F L +L L L
Sbjct: 25 ELAEVPASIPVNT-----RYLNLQENSIQVIRTDTFKH-LRHLEILQLSKNLVRKIEVGA 78
Query: 242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
L +L+ +PT+ LS L L L N +I S AF + SL+ + +
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 302 NLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTP--LGTLKCDRLDLSGNNFSNIDSVAF 359
+ L+ I + P ++ + L+LSGN I +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
+ L SL+ + + + + +I++ AF D LE + ++ N NL LP LF
Sbjct: 199 QGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHN-NLMSLPHDLFT--------- 247
Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN 453
PL R+ + L+ NP HC+C+
Sbjct: 248 --------------PLHRLERVHLNHNPWHCNCD 267
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 100/280 (35%), Gaps = 84/280 (30%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C +Q CT L VP S + R L+L
Sbjct: 6 CPAACSCSNQASRVICTRRELAEVPA-----------------------SIPVNTRYLNL 42
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N I V+ + F++ L L +S N + + F GL L TL+L N+++ +
Sbjct: 43 QENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV---- 98
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
++ F L LR L L NN I +P+ + +P SL
Sbjct: 99 ---------------------PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLRR 135
Query: 202 LYLNE-NLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXA 260
L L E +E + + +F L NL L L
Sbjct: 136 LDLGELKRLEYISEAAFE-GLVNLRYLNLGMCNL-------------------------- 168
Query: 261 IPTKQLSKLSALVN---LDLSGNNFSNIDSVAFKSLFSLK 297
K + L+ALV L+LSGN I +F+ L SL+
Sbjct: 169 ---KDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
CP +C+C + C++ L +P + + L N + + T F +LR +
Sbjct: 5 CPEKCRC--EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKI 62
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
+ S NKI + FE + + + ++ N + + FKGL+ LKTL L N+I+ +
Sbjct: 63 NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
+F + LL L N IT F +L SL L L
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNL 160
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 344 LDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNL 401
L L+ N F+ +++ FK L L+ KIN N + I++ AF + +++ N L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLR--KINFSNNKITDIEEGAFEGASGVNEILLTSN-RL 93
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-------------------------PLE 436
+ + K+F+G +LK++ L+ N ++ + F L
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153
Query: 437 RISFLDLSDNPLHCDC 452
+S L+L NP +C+C
Sbjct: 154 SLSTLNLLANPFNCNC 169
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
CP+ C C + CT GL+ +P + ++L +N + + F L L
Sbjct: 2 CPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
+L N++ + + FE + + L + N+I +S F GL +LKTL+L N+IS +
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 140 TAFR 143
+F
Sbjct: 120 GSFE 123
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 367 LVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSL 425
LVK+ L N L I+ AF ++ + + EN +K++ +K+F G LK+++L N +
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 426 SHLEASHFP-LERISFLDLSDNPLHCDCN 453
S + F L ++ L+L+ NP +C+C+
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCH 143
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 146 LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLN 205
LH L+L+ N + +F L L L+L NQ+ + N H + L L
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH--IQELQLG 86
Query: 206 ENLIETVLDNSFPFTLTNLHTLAL 229
EN I+ + + F L L TL L
Sbjct: 87 ENKIKEISNKMF-LGLHQLKTLNL 109
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELRSLD 80
CPSRC C E C GL VP + + L N++ ++ H +L L
Sbjct: 1 CPSRCSC--SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 81 LSVNKINVLG--SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
LS N ++ G S + L L++S+N + +S + F GL++L+ LD ++ + ++
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 117
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSE---------IFSSLKSLRILKLDNN 181
+ + + LS N+ Y + S IF+ L SL +LK+ N
Sbjct: 118 EFS---------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 73 YIELRSL---DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129
+ ELR+L DLS ++ L F + L LN+S+N +L +K L L+ LD
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Query: 130 SYNKISVINK 139
S N I K
Sbjct: 231 SLNHIMTSKK 240
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 173/425 (40%), Gaps = 91/425 (21%)
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL--S 130
+ L LDLS N ++ +G+ +F Y L L++ YN I LS +F GL L+ L L +
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Query: 131 YNKISV-------INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN--N 181
+ K SV I+ +F+ +LE L + NNI S F+ L SL+ L L
Sbjct: 307 FTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPS-TKSNTFTGLVSLKYLSLSKTFT 365
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
+ + N +L H L L L +N I + + +F + L L L L
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW-LGQLRILDL------------ 412
Query: 242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
+ ++ L + + LS N + + + +F + SL+ + +
Sbjct: 413 -----------GLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLML 461
Query: 302 NLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLK-CDRLDLSGNNFSNIDSVAFK 360
+ L ++D S +P L+ LDLS NN +NI+ +
Sbjct: 462 RRVA-LKNVD-------------------ISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 361 SLFSLKLVKINLIPNLDSIDQRA-------FVDNIQLETVIINENMNLKQLPSKLFQG-- 411
L +L+++ NL + +RA F+ + ++ E+ L ++P +F+
Sbjct: 502 GLENLEILDFQ-HNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLF 560
Query: 412 ----------------------NTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNP 447
T+L+S++L+ N ++ +E F P + ++ LD+ NP
Sbjct: 561 ELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNP 620
Query: 448 LHCDC 452
C C
Sbjct: 621 FDCTC 625
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 27 QCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVNK 85
QC + A C+ L +P L + + L N++ + T + Y +L LD N
Sbjct: 1 QCTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNS 60
Query: 86 INVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT 145
I+ L + L LN+ +NE+S +S TF L LDL N I I F++
Sbjct: 61 ISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQ 120
Query: 146 LHLELLILSFNNIT 159
+L L LS N ++
Sbjct: 121 KNLIKLDLSHNGLS 134
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
++SLDLS N+I + + + + L L ++ N I+ + +D+F L L+ LDLSYN +S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
++ + F+ L L L N ++ +FS L L+IL++ N
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
++SLDLS N+I + + + + L L ++ N I+ + +D+F L L+ LDLSYN +S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
++ + F+ L L L N ++ +FS L L+IL++ N
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 132
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 25/176 (14%)
Query: 35 ASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL---DLSVNKINVLGS 91
++C DA P +QT+ILR+N ++++ T + L++L D+S N + +
Sbjct: 354 SACEDAW---------PSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSM-P 403
Query: 92 HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151
++ K+ LN+S I ++ T K L+ LD+S N +++ + + L+ L
Sbjct: 404 ETCQWPEKMKYLNLSSTRIHSV---TGCIPKTLEILDVSNNNLNLFSLNLPQ----LKEL 456
Query: 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
+S N + D+ + L L +LK+ NQ+ VP+ + L SL ++L+ N
Sbjct: 457 YISRNKLMTLPDASL---LPMLLVLKISRNQLKSVPDGIFDRL--TSLQKIWLHTN 507
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
+R LDLS + L S FE L LN++YN+I+ ++ + F GL L+ L+LSYN +
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
+ + F + + L N+I +D + F L+ L+ L L +N +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNAL 374
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
+L++S+ + +L+ F+ LK+LK L+L+YNKI+ I AF +L++L LS+N +
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
S F L + + L N I + + L + L L L +N + T+
Sbjct: 330 YSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFL--EKLQTLDLRDNALTTI 377
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT--YFEDSEIFSSL 170
+ K+ F+ L L+ LDL +KI ++ AF+ HL L L F ++ +D F +L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG-YFRNL 122
Query: 171 KSLRILKLDNNQI 183
K+L L L NQI
Sbjct: 123 KALTRLDLSKNQI 135
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEY------QNKLLNLNI 105
++QT+ LR+N ++ +H+ S + + LS NK+ L N +N+L NL+I
Sbjct: 363 KLQTLDLRDNALTTIHFIPS----IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAF-RDTLHLELLILSFNNITYFEDS 164
Y + + L+ L L+ N+ S + + LE L L N + ++
Sbjct: 419 LYFLLR---------VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469
Query: 165 E----IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
E +F L L++L L++N + +P V S+L +L L LN N + + N P
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL--TALRGLSLNSNRLTVLSHNDLP 525
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 117 TFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
TFKGL+ +KT DLS +KI + K+ F LE L L+ N I +D+ F L L+
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLK 326
Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L LD NQ+ VP+ + L SL ++L+ N
Sbjct: 327 ELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 357
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYNKISVI 137
+DLS+N I L +F L L + + +TF+GL L L L YN+ +
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 138 NKTAFRDTLHLELLILSFNNI-TYFEDSEIFSSLKSLRILKLDNNQILDV-PNNVLSNLP 195
AF +LE+L L+ N+ F L SL +L L +N I + P + N+
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM- 153
Query: 196 HQSLHYLYLNENLIETVLDNSF------PFTLTNLHTLAL 229
+ H L L N ++++ + FTL L ++ L
Sbjct: 154 -RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED 163
++S ++I AL K F +L+ L L+ N+I+ I+ AF HL+ L L N + D
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPD 340
Query: 164 SEIFSSLKSLRILKLDNN 181
IF L SL+ + L N
Sbjct: 341 G-IFDRLTSLQKIWLHTN 357
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
+++ DLS +KI L F + L L ++ NEI+ + + F GL LK L L N++
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 136 VINKTAFRDTLHLELLILSFN 156
+ F L+ + L N
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTN 357
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
K L+L+ S+ + L+ +TF L L L+L+ NKIS I AF HLE+L L N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
I + + L+++ + L N+ L + N + +P SL L L ++ V +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSP 473
Query: 217 FPFT-LTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAI--------PTKQLS 267
PF L NL L L L L + P L
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533
Query: 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
LS L L+L N F I FK LF LK++ + L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL--S 130
+ L LDLS N +NV+G+ +F + +L + YN I L + GL ++ L+L S
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 131 YNKISV-------INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN-- 181
+ K S+ I+ +F+ LE L + N+I + S +F+ L +L+ L L N+
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFT 365
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ + N +L H LH L L +N I + ++F +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 28/111 (25%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQ 403
L+L N F I FK LF LK++ + L NL
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGL--------------------------NNLNT 574
Query: 404 LPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPLHCDC 452
LP+ +F +LKS++L+ N ++ +E F ++ LD+ NP C C
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 35 ASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVNKINVLGSHN 93
A C+ L VP L + + L N++ + + Y +L SLD+ N I+ L
Sbjct: 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68
Query: 94 FEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLIL 153
+ L LN+ +NE+S LS TF L L L N I I F +L L L
Sbjct: 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 154 SFNNIT 159
S N ++
Sbjct: 129 SHNGLS 134
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
LN+ N + + FK L ELK +DL N ++ + + F + + L+ L L N IT E
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 163 DSEIFSSLKSLRILKLDNN----------QILDVPNNVLSNLPHQSLHYL 202
+ ++L L + N ++ N +N+P S HYL
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 12 LALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTL 70
+A + + CPS+C C ++ C+ L VP + Q + L +N+I+ +
Sbjct: 1 MARIRARGSACPSQCSCSGTTVD--CSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVF 58
Query: 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130
+L LDL N++ VL + F+ +L L+++ N++ ++ + F LK L + L
Sbjct: 59 DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 118
Query: 131 YNKISVINKTAFRDTLHLELLI 152
N A D L+L I
Sbjct: 119 NNPWDC----ACSDILYLSRWI 136
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
++L L N IT E +F L L L LDNNQ+ +P V L L L LN+N
Sbjct: 41 QVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ--LTQLSLNDNQ 97
Query: 209 IETVLDNSF 217
++++ +F
Sbjct: 98 LKSIPRGAF 106
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 27/97 (27%)
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
N+I+ L F L +L LDL N+++V+ + +F
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVL-------------------------PAGVF 82
Query: 168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYL 204
L L L L++NQ+ +P NL +SL +++L
Sbjct: 83 DKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHIWL 117
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
K L+L+ S+ + L+ +TF L L L+L+ NKIS I AF HLE+L L N
Sbjct: 366 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 425
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
I + + L+++ + L N+ L + N + +P SL L L ++ V +
Sbjct: 426 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSP 483
Query: 217 FPFT-LTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAI--------PTKQLS 267
PF L NL L L L L + P L
Sbjct: 484 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 543
Query: 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
LS L L+L N F I FK LF LK++ + L
Sbjct: 544 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 579
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL--S 130
+ L LDLS N +NV+G+ +F + +L + YN I L + GL ++ L+L S
Sbjct: 257 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 316
Query: 131 YNKISV-------INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN-- 181
+ K S+ I+ +F+ LE L + N+I + S +F+ L +L+ L L N+
Sbjct: 317 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFT 375
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ + N +L H LH L L +N I + ++F +
Sbjct: 376 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 413
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 28/111 (25%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQ 403
L+L N F I FK LF LK++ + L NL
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGL--------------------------NNLNT 584
Query: 404 LPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPLHCDC 452
LP+ +F +LKS++L+ N ++ +E F ++ LD+ NP C C
Sbjct: 585 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 635
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 24 SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLS 82
S +C A C+ L VP L + + L N++ + + Y +L SLD+
Sbjct: 8 STTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 67
Query: 83 VNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAF 142
N I+ L + L LN+ +NE+S LS TF L L L N I I F
Sbjct: 68 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 127
Query: 143 RDTLHLELLILSFNNIT 159
+L L LS N ++
Sbjct: 128 VKQKNLITLDLSHNGLS 144
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
LN+ N + + FK L ELK +DL N ++ + + F + + L+ L L N IT E
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 163 DSEIFSSLKSLRILKLDNN----------QILDVPNNVLSNLPHQSLHYL 202
+ ++L L + N ++ N +N+P S HYL
Sbjct: 611 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 660
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
K L+L+ S+ + L+ +TF L L L+L+ NKIS I AF HLE+L L N
Sbjct: 361 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 420
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
I + + L+++ + L N+ L + N + +P SL L L ++ V +
Sbjct: 421 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSP 478
Query: 217 FPFT-LTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAI--------PTKQLS 267
PF L NL L L L L + P L
Sbjct: 479 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 538
Query: 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
LS L L+L N F I FK LF LK++ + L
Sbjct: 539 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 574
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL--S 130
+ L LDLS N +NV+G+ +F + +L + YN I L + GL ++ L+L S
Sbjct: 252 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 311
Query: 131 YNKISV-------INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN-- 181
+ K S+ I+ +F+ LE L + N+I + S +F+ L +L+ L L N+
Sbjct: 312 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFT 370
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ + N +L H LH L L +N I + ++F +
Sbjct: 371 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 408
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 28/111 (25%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQ 403
L+L N F I FK LF LK++ + L NL
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGL--------------------------NNLNT 579
Query: 404 LPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPLHCDC 452
LP+ +F +LKS++L+ N ++ +E F ++ LD+ NP C C
Sbjct: 580 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 630
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 24 SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLS 82
S +C A C+ L VP L + + L N++ + + Y +L SLD+
Sbjct: 3 STTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 62
Query: 83 VNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAF 142
N I+ L + L LN+ +NE+S LS TF L L L N I I F
Sbjct: 63 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 122
Query: 143 RDTLHLELLILSFNNIT 159
+L L LS N ++
Sbjct: 123 VKQKNLITLDLSHNGLS 139
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
LN+ N + + FK L ELK +DL N ++ + + F + + L+ L L N IT E
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 605
Query: 163 DSEIFSSLKSLRILKLDNN----------QILDVPNNVLSNLPHQSLHYL 202
+ ++L L + N ++ N +N+P S HYL
Sbjct: 606 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 655
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
CPS+C C ++ C+ L VP + Q + L +NRI+ + +L LD
Sbjct: 3 CPSQCSCSGTTVD--CSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
L N++ VL + F+ +L L+++ N++ ++ + F L+ L + L N
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDC---- 116
Query: 141 AFRDTLHLELLI 152
A D L+L I
Sbjct: 117 ACSDILYLSRWI 128
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
++L L N IT E +F L L L LDNNQ+ +P V L L L LN+N
Sbjct: 33 QVLYLYDNRITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLSLNDNQ 89
Query: 209 IETVLDNSF 217
++++ +F
Sbjct: 90 LKSIPRGAF 98
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 26/160 (16%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPSRC C E C GL VP + P T L+L
Sbjct: 1 CPSRCSC--SGTEIRCNSKGLTSVPTGI-PSSAT----------------------RLEL 35
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
NK+ L F+ +L L++S N+I +L F L +L L L NK+ +
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
F L+ L L N + D IF L SL+ + L N
Sbjct: 96 FDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTN 134
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
+F L L L L NQI +P+ V L L LYL+EN ++++ + F LT L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKL--TKLTILYLHENKLQSLPNGVF-DKLTQLK 103
Query: 226 TLAL 229
LAL
Sbjct: 104 ELAL 107
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
CPS+C C ++ C+ L VP + Q + L +N+I+ + +L LD
Sbjct: 3 CPSQCSCSGTTVD--CSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
L N++ VL + F+ +L L+++ N++ ++ + F LK L + L N
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC---- 116
Query: 141 AFRDTLHLELLI 152
A D L+L I
Sbjct: 117 ACSDILYLSRWI 128
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
++L L N IT E +F L L L LDNNQ+ +P V L L L LN+N
Sbjct: 33 QVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLSLNDNQ 89
Query: 209 IETVLDNSF 217
++++ +F
Sbjct: 90 LKSIPRGAF 98
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 27/97 (27%)
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
N+I+ L F L +L LDL N+++V+ + +F
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVL-------------------------PAGVF 74
Query: 168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYL 204
L L L L++NQ+ +P NL +SL +++L
Sbjct: 75 DKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHIWL 109
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 60 ENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQ-NKLLNLN---ISYNEISALSK 115
+ ++ NV +L Y L LDLS N ++ L + E+ +L NL+ +S+N ++ +S
Sbjct: 27 KQQLPNVPQSLPSYTAL--LDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
+ F + L+ LDLS N + +++ F D LE+L+L +NN D F + L+
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQK 140
Query: 176 LKLDNNQILDVP 187
L L NQI P
Sbjct: 141 LYLSQNQISRFP 152
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 332 SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN--LDSIDQRAFVDNIQ 389
+ P+ L+ LDLS N+ +D F L +L+++ L+ N + +D+ AF D Q
Sbjct: 83 AFVPVPNLR--YLDLSSNHLHTLDEFLFSDLQALEVL---LLYNNHIVVVDRNAFEDMAQ 137
Query: 390 LETVIINENMNLKQLPSKLFQGNTNLKSV---SLKGNSLSHL---EASHFPLERISFLDL 443
L+ + +++N + + P +L + L + L N L L + P + L L
Sbjct: 138 LQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
Query: 444 SDNPLHCDC 452
+NPL CDC
Sbjct: 197 HNNPLECDC 205
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 14 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 74 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ NN+T + + + L++L L L N + +P
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 192
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 193 FGSHLLPFAFLH 204
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N NL
Sbjct: 106 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-NL 161
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 162 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 212
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQN--KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
LR LDLS + I N + +N L +LN+SYNE +L + FK +L+ LDL++ +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
+ V + + LHL ++ +++ ++F L +L+ L L N
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%)
Query: 27 QCFDQKLEASCTDAGLEVVPIQLN--PEVQTIILRENRISNV-HYTLSFYIELRSLDLSV 83
CF E T L +P L ++ ++L N+ N+ + S + L L +
Sbjct: 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 84 NKINV-LGSHNFEYQNKLLNLNISYNEI--SALSKDTFKGLKELKTLDLSYNKISVINKT 140
N + LG+ E L L++S+++I S + L L++L+LSYN+ +
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL-SNLPHQSL 199
AF++ LELL L+F + + F +L L++L L ++ +LD+ + L LP +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLP--AL 451
Query: 200 HYLYLNEN 207
+L L N
Sbjct: 452 QHLNLQGN 459
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L S+N + + TF L L LDL+ +I I++ F+ L+ L+L+ N + +
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV-LDNSFP 218
++ + S K+L+ L I + L N ++L LYL N I ++ L FP
Sbjct: 98 ETAL-SGPKALKHLFFIQTGISSIDFIPLHN--QKTLESLYLGSNHISSIKLPKGFP 151
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ NN+T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N NL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-NL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ NN+T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N NL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-NL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ NN+T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N NL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-NL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 148
Query: 195 PHQSLHYLYLNENLIETV 212
+L +L L+ N I+++
Sbjct: 149 --TNLEHLDLSSNKIQSI 164
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 53 VQTIILRENRISNVHYTLSFYIELRSLD-LSVNKINVLGSHNFE--YQNKLLNLNISYNE 109
+ T+IL N I ++ L + L SL L + N+ NF + L LN+++N
Sbjct: 78 LSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 110 ISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSE 165
I + + F L L+ LDLS NKI I T R + LL LS + F
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
F ++ L+ L LD NQ+ VP+ + L SL ++L+ N
Sbjct: 196 AFKEIR-LKELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 234
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 149
Query: 195 PHQSLHYLYLNENLIETV 212
+L +L L+ N I+++
Sbjct: 150 --TNLEHLDLSSNKIQSI 165
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 47 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 107 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 53 VQTIILRENRISNVHYTLSFYIELRSLD-LSVNKINVLGSHNFE--YQNKLLNLNISYNE 109
+ T+IL N I ++ L + L SL L + N+ NF + L LN+++N
Sbjct: 79 LSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 136
Query: 110 ISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSE 165
I + + F L L+ LDLS NKI I T R + LL LS + F
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 196
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
F ++ L+ L LD NQ+ VP+ + L SL ++L+ N
Sbjct: 197 AFKEIR-LKELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 235
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRS 78
A CPS+C C DQ L +C + L VP + + Q + L N+I+ + + L+
Sbjct: 4 AGCPSQCSC-DQTL-VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ 61
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
L + NK+ + + F+ +L L+++ N + ++ + F LK L + L N
Sbjct: 62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC-- 119
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
RD ++L + +I D + + S +
Sbjct: 120 --ECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAK 153
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 260 AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSL 296
AIPT KL+ L LDL+ N+ +I AF +L SL
Sbjct: 71 AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 149
Query: 195 PHQSLHYLYLNENLIETV 212
+L +L L+ N I+++
Sbjct: 150 --TNLEHLDLSSNKIQSI 165
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 47 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 107 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 53 VQTIILRENRISNVHYTLSFYIELRSLD-LSVNKINVLGSHNFE--YQNKLLNLNISYNE 109
+ T+IL N I ++ L + L SL L + N+ NF + L LN+++N
Sbjct: 79 LSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 136
Query: 110 ISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSE 165
I + + F L L+ LDLS NKI I T R + LL LS + F
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 196
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
F ++ L+ L LD NQ+ VP+ + L SL ++L+ N
Sbjct: 197 AFKEIR-LKELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 235
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 150
Query: 195 PHQSLHYLYLNENLIETV 212
+L +L L+ N I+++
Sbjct: 151 --TNLEHLDLSSNKIQSI 166
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 48 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 108 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 53 VQTIILRENRISNVHYTLSFYIELRSLD-LSVNKINVLGSHNFE--YQNKLLNLNISYNE 109
+ T+IL N I ++ L + L SL L + N+ NF + L LN+++N
Sbjct: 80 LSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 137
Query: 110 ISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSE 165
I + + F L L+ LDLS NKI I T R + LL LS + F
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 197
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
F ++ L+ L LD NQ+ VP+ + L SL ++L+ N
Sbjct: 198 AFKEIR-LKELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 236
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ NN+T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N NL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-NL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 150
Query: 195 PHQSLHYLYLNENLIETV 212
+L +L L+ N I+++
Sbjct: 151 --TNLEHLDLSSNKIQSI 166
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 48 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 108 VALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 53 VQTIILRENRISNVHYTLSFYIELRSLD-LSVNKINVLGSHNFE--YQNKLLNLNISYNE 109
+ T+IL N I ++ L + L SL L + N+ NF + L LN+++N
Sbjct: 80 LSTLILTGNPIQSL--ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNL 137
Query: 110 ISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSE 165
I + + F L L+ LDLS NKI I T R + LL LS + F
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 197
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
F ++ L+ L LD NQ+ VP+ + L SL ++L+ N
Sbjct: 198 AFKEIR-LKELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 236
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 10/188 (5%)
Query: 27 QCFDQKLEASCTDAGLEVVP--IQLNPEVQTIILRENRISNV-HYTLSFYIELRSLDLSV 83
+CF + E T A L +P I+ ++ ++L N + + + LR L +
Sbjct: 274 RCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKG 333
Query: 84 NKINV-LGSHNFEYQNKLLNLNISYNEISA--LSKDTFKGLKELKTLDLSYNKISVINKT 140
N + LG+ E L L++S+++I A K L+ L+ L+LSYN+ +
Sbjct: 334 NMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ 393
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSL 199
AF++ LELL ++F ++ F +L LR+L L ++ +LD N ++L+ L Q L
Sbjct: 394 AFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL-SHCLLDTSNQHLLAGL--QDL 450
Query: 200 HYLYLNEN 207
+L L N
Sbjct: 451 RHLNLQGN 458
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 37 CTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFE 95
C + GL +P L + + N + + T S I L LDL+ +IN + F+
Sbjct: 18 CENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQ 77
Query: 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155
++L + ++ N + +++ + G K LK L L+ IS + + +LE L L
Sbjct: 78 SHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGS 137
Query: 156 NNITYFEDSEIFSSLKSLRILKLDNNQI 183
N+I+ E F + ++L++L NN I
Sbjct: 138 NHISSINLPENFPT-QNLKVLDFQNNAI 164
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQN--KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
L+ LDLS + I N + +N L LN+SYNE L FK +L+ LD+++
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 134 ISVINKTAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQILD 185
+ V + LHL L +L+ ++ + + + + L+ LR L L N D
Sbjct: 411 LHVKAPHSPFQNLHL-LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 74 IELRSL-DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
+EL +L DL + +I+ ++ F Y + + L + +N I L F+ + L L L N
Sbjct: 71 VELLNLNDLQIEEID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
+S + + F +T L L +S NN+ ED + F + SL+ L+L +N++ V +++
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIP 186
Query: 193 NLPHQSLHY 201
+L H ++ Y
Sbjct: 187 SLFHANVSY 195
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 64 SNVHY----TLSFYIELRSLDLSVNKINVL-GSHNFE-------YQN-----------KL 100
+NV Y TL+ I + LD S N INV+ G N E + N L
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 250
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY 160
+ +++SYNE+ + F ++ L+ L +S N++ +N + L++L LS N++ +
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLH 309
Query: 161 FEDSEIFSSLKSLRILKLDNNQIL 184
E ++ L L LD+N I+
Sbjct: 310 VERNQ--PQFDRLENLYLDHNSIV 331
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP 434
+L S+ + F + +L T+ ++ N NL+++ FQ T+L+++ L N L+H++ S P
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 387 NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF 433
N+ L TV++ E +L LP +F L ++S+ N+L +E F
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
++SLDLS NKI +G + L L + + I+ + D F L L+ LDLS N +S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
++ + F L+ L L N + +F +L +L+ L++ N
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELR---SLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
P +QT++L +N + ++ T + L+ SLD+S N + + + ++ K+ LN+S
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSS 419
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
I + + L+ LD+S N + + R L+ L +S N + D+ +F
Sbjct: 420 TGIRVVKTCI---PQTLEVLDVSNNNLDSFSLFLPR----LQELYISRNKLKTLPDASLF 472
Query: 168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L ++K+ NQ+ VP+ + L SL ++L+ N
Sbjct: 473 ---PVLLVMKISRNQLKSVPDGIFDRL--TSLQKIWLHTN 507
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 145 TLHLELLILSFNNITYFEDSEIFSS-------LKSLRILKLDNNQI--------LDVPNN 189
T ++ L LSFN ITY ++ + LKS RI ++ + LD+ +N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 190 VLSNL------PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL 229
LS+L P SL YL L N +T+ S LTNL TL +
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ N++T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N +L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-DL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
++SLDLS NKI +G + L L + + I+ + D F L L+ LDLS N +S
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
++ + F L+ L L N + +F +L +L+ L++ N
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELR---SLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
P +QT++L +N + ++ T + L+ SLD+S N + + + ++ K+ LN+S
Sbjct: 387 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSS 445
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
I + + L+ LD+S N + + R L+ L +S N + D+ +F
Sbjct: 446 TGIRVVKTCI---PQTLEVLDVSNNNLDSFSLFLPR----LQELYISRNKLKTLPDASLF 498
Query: 168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L ++K+ +NQ+ VP+ + L SL ++L+ N
Sbjct: 499 ---PVLLVMKIASNQLKSVPDGIFDRL--TSLQKIWLHTN 533
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 145 TLHLELLILSFNNITYFEDSEIFSS-------LKSLRILKLDNNQI--------LDVPNN 189
T ++ L LSFN ITY ++ + LKS RI ++ + LD+ +N
Sbjct: 51 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 190 VLSNL------PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL 229
LS+L P SL YL L N +T+ S LTNL TL +
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ N +T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-QL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 148
Query: 195 PHQSLHYLYLNENLIETV 212
+ L +L L+ N I+++
Sbjct: 149 TN--LEHLDLSSNKIQSI 164
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYNKI 134
L+ LDLS N + + S NF +L +L+ ++ + +S+ F L+ L LD+S+
Sbjct: 375 LKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 135 SVINKTAFRDTLHLELLILSFN---------------NITYFEDSE---------IFSSL 170
V F LE+L ++ N N+T+ + S+ F+SL
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
SL++L + +NQ+ VP+ + L SL ++L+ N
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRL--TSLQKIWLHTN 528
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ N +T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-QL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 172
Query: 195 PHQSLHYLYLNENLIETV 212
+ L +L L+ N I+++
Sbjct: 173 TN--LEHLDLSSNKIQSI 188
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
D F L+ L LDLS ++ ++ TAF L++L +S NN + D+ + L SL++
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQV 546
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L N I+ L + P SL +L L +N
Sbjct: 547 LDYSLNHIMTSKKQELQHFP-SSLAFLNLTQN 577
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 74 IELRSL-DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
+EL +L DL + +I+ ++ F Y + + L + +N I L F+ + L L L N
Sbjct: 77 VELLNLNDLQIEEID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
+S + + F +T L L +S NN+ ED + F + SL+ L+L +N++ V +++
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIP 192
Query: 193 NLPHQSLHY 201
+L H ++ Y
Sbjct: 193 SLFHANVSY 201
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 64 SNVHY----TLSFYIELRSLDLSVNKINVL-GSHNFE-------YQN-----------KL 100
+NV Y TL+ I + LD S N INV+ G N E + N L
Sbjct: 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 256
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY 160
+ +++SYNE+ + F ++ L+ L +S N++ +N + L++L LS N++ +
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLH 315
Query: 161 FEDSEIFSSLKSLRILKLDNNQIL 184
E ++ L L LD+N I+
Sbjct: 316 VERNQ--PQFDRLENLYLDHNSIV 337
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP 434
+L S+ + F + +L T+ ++ N NL+++ FQ T+L+++ L N L+H++ S P
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ N +T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-QL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
LE +C L +P L + + L EN + TL Y L L+L + K+ V
Sbjct: 13 LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89 LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
G SHN LL L++S+N +++L +GL EL+ L L
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
N++ + T LE L L+ N +T + + + L++L L L N + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
+ LP LH
Sbjct: 192 FGSHLLPFAFLH 203
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
LD+S N +++ A + L L+ +K N L ++ +LE + + N L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANN-QL 160
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+LP+ L G NL ++ L+ NSL + F + F L NP C+C
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
++LDLS N + LGS++F +L L++S EI + ++ L L TL L+ N I
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
+ AF L+ L+ N+ E+ I LK+L+ L + +N Q +P SNL
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 148
Query: 195 PHQSLHYLYLNENLIETV 212
+L +L L+ N I+++
Sbjct: 149 T--NLEHLDLSSNKIQSI 164
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
D F L+ L LDLS ++ ++ TAF L++L +S NN + D+ + L SL++
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQV 522
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L N I+ L + P SL +L L +N
Sbjct: 523 LDYSLNHIMTSKKQELQHFP-SSLAFLNLTQN 553
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
Y+ + EL+ LDLS +I + ++ + L L ++ N I +L+ F GL L+ L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
++ + L+ L ++ N I F+ E FS+L +L L L +N+I +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 487 GTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538
T E Q + IK+ L + + ++C++P D +G+ V ++ ++ C+ N
Sbjct: 556 ACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL---NITCQMN 604
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 27 QCFDQKLEASCTDAGLEVVPIQLNPE--VQTIILREN------RISNVHYTLSFYIELRS 78
QCF Q E T L+ +P + ++ ++L N +IS ++ ++ +R
Sbjct: 272 QCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRG 331
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA--LSKDTFKGLKELKTLDLSYNKISV 136
+V K++ LG E L L++S+N+I A K L L+TL+LS+N+
Sbjct: 332 ---NVKKLH-LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG 387
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLP 195
+ AF++ LELL L+F + F +L L++L L LD N ++L+ LP
Sbjct: 388 LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL-TYCFLDTSNQHLLAGLP 446
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 37 CTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFE 95
C + GL +P L + + N + +H T S + L LDL+ +IN + F+
Sbjct: 16 CENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQ 75
Query: 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155
++L L ++ N + +++ + G K LK L L IS + + +LE L L
Sbjct: 76 SHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGS 135
Query: 156 NNITYFEDSEIFSSLKSLRILKLDNNQI 183
N+I+ + + F + ++L++L NN I
Sbjct: 136 NHISSIKFPKDFPA-RNLKVLDFQNNAI 162
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
L++S N I+ L + + +KL L IS+N I L FK +EL+ LDLS+NK+
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--- 82
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
K + T++L+ L LSFN + F ++ L+ L L +
Sbjct: 83 KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 52 EVQTIILRENRISNVHYTLSFYIELRSL---DLSVNKINV-LGSHNFEYQNKLLNLNISY 107
E++T+IL+ N++ + +++SL D+S N ++ + + LL+LN+S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 108 NEISALSKDTFKGLK-ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI 166
N L+ F+ L +K LDL NKI I K +
Sbjct: 409 N---ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK----------------------- 442
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L++L+ L + +NQ+ VP+ + L SL ++L+ N
Sbjct: 443 ---LEALQELNVASNQLKSVPDGIFDRL--TSLQKIWLHTN 478
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 44/165 (26%)
Query: 52 EVQTIILRENRISNVHYTLSFYIE----LRSLDLSVNKINVLGSHNFE----YQNKLLNL 103
+QT+IL+ N + N + ++ + L +LD+S+N +N SH ++ + +L L
Sbjct: 378 RLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLN---SHAYDRTCAWAESILVL 433
Query: 104 NISYNEISALSKDTFKGL-KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
N+S N L+ F+ L ++K LDL N+I I K D HL+
Sbjct: 434 NLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSIPK----DVTHLQ------------- 473
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
+L+ L + +NQ+ VP+ V L SL Y++L++N
Sbjct: 474 ---------ALQELNVASNQLKSVPDGVFDRL--TSLQYIWLHDN 507
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 30/153 (19%)
Query: 29 FDQKLEASC--TDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVNK 85
F +LE+ ++ L VP L P + + L +N IS + +SF ELR L LS N+
Sbjct: 28 FSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 86 INVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT 145
I L H F + ++L+ LD+S+N++ I+
Sbjct: 88 IRSLDFHVFLFN------------------------QDLEYLDVSHNRLQNISCCPMASL 123
Query: 146 LHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
HL+ LSFN+ + F +L L L L
Sbjct: 124 RHLD---LSFNDFDVLPVCKEFGNLTKLTFLGL 153
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 26/148 (17%)
Query: 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
A CPS+C C + +C + L VP + Q L
Sbjct: 11 AACPSQCSCSGTTV--NCQERSLASVPAGIPTTTQV-----------------------L 45
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
L +N+I L F+ +L LN++ N+++AL F L +L L L N++ I
Sbjct: 46 HLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPM 105
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIF 167
F + L + L FNN E S+I
Sbjct: 106 GVFDNLKSLTHIYL-FNNPWDCECSDIL 132
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ L L N+I+ + F L L L+ N +T +F L L L L NQ+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVG-VFDKLTKLTHLALHINQLK 101
Query: 185 DVPNNVLSNLPHQSLHYLYLNEN 207
+P V NL +SL ++YL N
Sbjct: 102 SIPMGVFDNL--KSLTHIYLFNN 122
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 27 QCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNK 85
QC DQKL VP + + I L N + + Y+ S + EL+ LDLS +
Sbjct: 17 QCMDQKLSK---------VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67
Query: 86 INVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT 145
I + + + L NL ++ N I + S +F GL L+ L K++ +
Sbjct: 68 IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 146 LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL---PHQSLHYL 202
+ L+ L ++ N I + FS+L +L + L N I + N L L P +L L
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS-L 186
Query: 203 YLNENLIETVLDNSF 217
++ N I+ + D +F
Sbjct: 187 DMSLNPIDFIQDQAF 201
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 58 LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
++N +SNV + L LDLS ++ + F+ ++L LN+S+N + L
Sbjct: 460 FKDNTLSNVFANTT---NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516
Query: 118 FKGLKELKTLDLSYNKI 134
+ L L TLD S+N+I
Sbjct: 517 YNQLYSLSTLDCSFNRI 533
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYNKI 134
LR LDLS N ++ S NF +L +L+ ++ + +++ F L++L LD+SY
Sbjct: 378 LRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL 194
+ F L L ++ N+ S +F++ +L L L Q+ + V L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 27 QCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNK 85
QC DQKL VP + + I L N + + Y+ S + EL+ LDLS +
Sbjct: 12 QCMDQKLSK---------VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 62
Query: 86 INVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT 145
I + + + L NL ++ N I + S +F GL L+ L K++ +
Sbjct: 63 IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 122
Query: 146 LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL---PHQSLHYL 202
+ L+ L ++ N I + FS+L +L + L N I + N L L P +L L
Sbjct: 123 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS-L 181
Query: 203 YLNENLIETVLDNSF 217
++ N I+ + D +F
Sbjct: 182 DMSLNPIDFIQDQAF 196
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 58 LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
++N +SNV + L LDLS ++ + F+ ++L LN+S+N + L
Sbjct: 455 FKDNTLSNVFANTT---NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 511
Query: 118 FKGLKELKTLDLSYNKI 134
+ L L TLD S+N+I
Sbjct: 512 YNQLYSLSTLDCSFNRI 528
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYNKI 134
LR LDLS N ++ S NF +L +L+ ++ + +++ F L++L LD+SY
Sbjct: 373 LRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL 194
+ F L L ++ N+ S +F++ +L L L Q+ + V L
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
R LDL KI V+ + ++ ++ S NEI L D F L+ LKTL ++ N+I
Sbjct: 22 RELDLRGYKIPVIENLGATL-DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR 78
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH 196
I + + L LIL+ N++ D + +SLKSL L + N + +N H
Sbjct: 79 IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV--------TNKKH 130
Query: 197 QSLHYLY 203
L+ +Y
Sbjct: 131 YRLYVIY 137
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 121 LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
L ++ L L NK+ I +A ++ +L LIL+ N + + +F L +L+ L L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVE 118
Query: 181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL 229
NQ+ +P+ V L +L YLYL N ++++ F LTNL L L
Sbjct: 119 NQLQSLPDGVFDKL--TNLTYLYLYHNQLQSLPKGVFD-KLTNLTRLDL 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTF--KGLKELKTLDLSY 131
I+L SL+L+ N+I + ++ + ++ NL+ ++N++ + + F K + +D SY
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVXSAIDFSY 411
Query: 132 NKISVINKTAFR-------DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
N+I ++ F +++ + LS N I+ F E+FS+ L + L N +
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLXGNXLT 470
Query: 185 DVPNNVLSN 193
++P N L +
Sbjct: 471 EIPKNSLKD 479
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 78 SLDLSVNKINVLGSHNFEYQN----KLLN---LNISYNEISALSKDTFKGLKELKTLDLS 130
++D S N+I + NF+ + K +N +N+S N+IS K+ F L +++L
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLX 465
Query: 131 YNKISVINKTA-------FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
N ++ I K + F++T L + L FN +T D ++L L + L N
Sbjct: 466 GNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525
Query: 184 LDVPNNVL 191
P L
Sbjct: 526 SKFPTQPL 533
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
K+ L +S N + +S GL+ +KTLDL+ +I+ + T +L++L L N I
Sbjct: 92 KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI 147
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDV 186
T + L +L+ L + NNQ+ D+
Sbjct: 148 TNISP---LAGLTNLQYLSIGNNQVNDL 172
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
ELR+L + + + + F + +L LN+S+N + +LS T +GL L+ L LS N +
Sbjct: 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
K+ L +S N + +S GL+ +KTLDL+ +I+ + T +L++L L N I
Sbjct: 86 KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI 141
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDV 186
T + L +L+ L + N Q+ D+
Sbjct: 142 TNISP---LAGLTNLQYLSIGNAQVSDL 166
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLH 449
LKQ + L Q N+K + L GN LS + A+ P ++ L+LS N L+
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLH 449
LKQ + L Q N+K + L GN LS + A+ P ++ L+LS N L+
Sbjct: 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+L +L I N+I+ LS L +L L++ N+IS IN A +D L+ L + N I
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKXLNVGSNQI 277
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
+ D + ++L L L L+NNQ+ + V+ L + L L+L++N I +
Sbjct: 278 S---DISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTN--LTTLFLSQNHITDI 326
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 354 IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNT 413
I AF+S SL V I+L ++ I +R+F L IN ++L+++ + FQG
Sbjct: 311 IGEEAFESCTSL--VSIDLPYLVEEIGKRSFRGCTSLSN--INFPLSLRKIGANAFQGCI 366
Query: 414 NLKSVSL 420
NLK V L
Sbjct: 367 NLKKVEL 373
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
LD+S N ++ L LN+ +N+IS D L+ L LDLS NK+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 139 KTAFRDTLHLELLILSFNNIT 159
A L + LS NN++
Sbjct: 697 PQAMSALTMLTEIDLSNNNLS 717
>pdb|2ICI|A Chain A, Crystal Structure Of Streptococcal Pyrogenic Exotoxin I
Length = 227
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 93 NFEYQNKLLNLN----ISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL 148
FE N + +LN ISYN D LK+ NKTA+ D LH+
Sbjct: 170 GFEEGNIIFHLNSGERISYNXFDTGHGDRESXLKKYSD-----------NKTAYSDQLHI 218
Query: 149 ELLILSFN 156
++ ++ FN
Sbjct: 219 DIYLVKFN 226
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
LD+S N ++ L LN+ +N+IS D L+ L LDLS NK+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 139 KTAFRDTLHLELLILSFNNIT 159
A L + LS NN++
Sbjct: 694 PQAMSALTMLTEIDLSNNNLS 714
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,231,740
Number of Sequences: 62578
Number of extensions: 498120
Number of successful extensions: 2151
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 414
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)