Query psy3330
Match_columns 608
No_of_seqs 490 out of 4465
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 22:12:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 100.0 1.9E-55 4.1E-60 435.9 12.3 448 21-538 45-501 (873)
2 KOG4237|consensus 100.0 3E-43 6.4E-48 334.9 3.2 366 19-537 34-405 (498)
3 PLN00113 leucine-rich repeat r 100.0 3.1E-40 6.8E-45 383.6 29.2 380 68-453 158-588 (968)
4 KOG4194|consensus 100.0 2.4E-42 5.2E-47 342.9 8.1 399 22-450 25-430 (873)
5 PLN00113 leucine-rich repeat r 100.0 3.1E-36 6.6E-41 350.3 27.7 394 51-453 93-516 (968)
6 KOG0472|consensus 100.0 7.6E-34 1.6E-38 271.1 -5.8 380 52-449 69-541 (565)
7 KOG0444|consensus 100.0 5.2E-32 1.1E-36 271.3 -2.1 357 33-448 10-374 (1255)
8 KOG0472|consensus 99.9 3.7E-31 7.9E-36 252.8 -10.3 375 51-451 45-473 (565)
9 KOG0444|consensus 99.9 5.5E-29 1.2E-33 249.7 -2.7 334 35-428 37-378 (1255)
10 KOG4237|consensus 99.9 1.4E-27 3.1E-32 228.1 -2.6 273 31-305 68-357 (498)
11 KOG0618|consensus 99.9 3.2E-27 7E-32 247.7 -0.6 389 33-448 48-488 (1081)
12 PRK15387 E3 ubiquitin-protein 99.9 1E-23 2.3E-28 228.5 17.1 196 32-286 203-398 (788)
13 KOG0618|consensus 99.9 6.9E-26 1.5E-30 237.8 -0.2 388 35-446 73-510 (1081)
14 PLN03210 Resistant to P. syrin 99.9 2.7E-20 5.8E-25 217.3 26.0 332 69-447 553-904 (1153)
15 PLN03210 Resistant to P. syrin 99.9 3.9E-20 8.4E-25 216.0 25.0 310 50-404 588-909 (1153)
16 PRK15370 E3 ubiquitin-protein 99.8 8.7E-20 1.9E-24 199.5 15.7 245 31-305 179-426 (754)
17 PRK15387 E3 ubiquitin-protein 99.8 1.3E-19 2.8E-24 196.9 16.8 230 32-302 224-453 (788)
18 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.9E-24 198.1 14.4 204 52-285 179-382 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-16 2.3E-21 162.6 2.9 280 78-448 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 7.5E-16 1.6E-20 156.4 5.1 249 51-302 23-315 (319)
21 KOG0617|consensus 99.6 3.9E-17 8.5E-22 139.4 -5.5 160 72-239 31-190 (264)
22 KOG0617|consensus 99.5 9.3E-17 2E-21 137.2 -4.9 158 96-263 31-190 (264)
23 PF14580 LRR_9: Leucine-rich r 99.3 2E-12 4.3E-17 116.1 5.0 123 52-177 20-146 (175)
24 PF14580 LRR_9: Leucine-rich r 99.2 4.9E-12 1.1E-16 113.5 4.2 122 60-186 6-128 (175)
25 KOG1259|consensus 99.2 1.6E-12 3.4E-17 121.2 -0.6 135 70-213 280-415 (490)
26 KOG3207|consensus 99.2 3.4E-12 7.4E-17 125.1 0.7 210 72-283 119-339 (505)
27 PLN03150 hypothetical protein; 99.1 3.9E-11 8.4E-16 131.4 6.3 110 340-451 419-530 (623)
28 KOG3207|consensus 99.1 8.8E-12 1.9E-16 122.2 0.7 220 79-301 98-333 (505)
29 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.8E-15 121.6 7.6 200 78-290 97-297 (394)
30 KOG1909|consensus 99.1 2.6E-11 5.7E-16 115.8 2.1 229 51-282 30-310 (382)
31 KOG0532|consensus 99.1 4.6E-12 1E-16 127.9 -3.6 175 76-263 77-251 (722)
32 KOG0532|consensus 99.1 3.8E-12 8.3E-17 128.5 -4.4 189 37-237 57-249 (722)
33 KOG0531|consensus 99.1 2.1E-11 4.6E-16 127.7 -0.6 197 73-284 71-269 (414)
34 PF13855 LRR_8: Leucine rich r 99.0 1.4E-10 3.1E-15 85.5 3.6 60 75-134 2-61 (61)
35 KOG1259|consensus 99.0 4.8E-11 1E-15 111.4 0.6 209 66-287 206-416 (490)
36 COG4886 Leucine-rich repeat (L 99.0 2.3E-10 5.1E-15 119.6 5.9 200 55-266 97-297 (394)
37 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.5E-15 83.5 3.3 61 98-158 1-61 (61)
38 KOG1909|consensus 98.9 3.7E-10 8E-15 108.1 2.5 233 69-305 25-309 (382)
39 KOG0531|consensus 98.9 2.5E-10 5.4E-15 119.6 0.2 238 51-303 72-314 (414)
40 TIGR00864 PCC polycystin catio 98.8 4.2E-09 9.2E-14 125.1 4.6 83 419-539 1-84 (2740)
41 KOG4658|consensus 98.8 9.4E-09 2E-13 115.2 6.5 139 40-182 511-653 (889)
42 KOG4658|consensus 98.7 1.3E-08 2.7E-13 114.2 7.0 130 72-207 521-652 (889)
43 PLN03150 hypothetical protein; 98.7 4.7E-08 1E-12 107.3 8.8 108 99-208 419-526 (623)
44 KOG1859|consensus 98.4 3.4E-09 7.4E-14 110.3 -7.6 129 52-185 165-293 (1096)
45 KOG1644|consensus 98.4 3.1E-07 6.8E-12 81.7 5.4 106 53-160 21-127 (233)
46 KOG1859|consensus 98.4 2.8E-09 6E-14 110.9 -9.2 102 76-184 166-267 (1096)
47 PF13306 LRR_5: Leucine rich r 98.3 1.3E-06 2.8E-11 75.5 7.1 118 69-193 7-124 (129)
48 PF13306 LRR_5: Leucine rich r 98.3 1.6E-06 3.5E-11 74.9 6.7 101 88-193 2-102 (129)
49 KOG1644|consensus 98.2 1.9E-06 4.1E-11 76.9 5.9 108 76-186 21-128 (233)
50 KOG4579|consensus 98.2 1.5E-07 3.3E-12 78.3 -1.3 109 52-162 28-139 (177)
51 KOG2982|consensus 98.2 9.9E-07 2.1E-11 83.0 3.8 204 97-301 70-286 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.2 1.7E-06 3.7E-11 80.4 4.0 220 51-283 30-285 (388)
53 smart00082 LRRCT Leucine rich 98.1 1.2E-06 2.6E-11 61.8 1.5 51 446-536 1-51 (51)
54 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.2E-11 57.3 2.7 41 388-430 1-41 (44)
55 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 55.8 3.9 38 75-113 2-39 (44)
56 KOG2120|consensus 98.0 2.6E-07 5.7E-12 86.9 -4.9 175 124-303 187-372 (419)
57 KOG2982|consensus 98.0 8E-06 1.7E-10 77.1 4.7 210 98-311 45-266 (418)
58 KOG4579|consensus 98.0 8.5E-07 1.8E-11 73.9 -1.5 112 340-455 54-165 (177)
59 PRK15386 type III secretion pr 97.7 0.00027 5.9E-09 71.7 11.4 32 72-107 50-81 (426)
60 PRK15386 type III secretion pr 97.7 0.00027 5.8E-09 71.8 10.8 137 96-259 50-190 (426)
61 KOG2120|consensus 97.7 1.4E-06 3.1E-11 82.0 -5.6 86 198-283 186-273 (419)
62 COG5238 RNA1 Ran GTPase-activa 97.5 7.8E-05 1.7E-09 69.7 4.1 200 70-286 26-258 (388)
63 KOG3665|consensus 97.4 0.00012 2.6E-09 80.6 3.8 108 74-183 122-232 (699)
64 smart00013 LRRNT Leucine rich 97.4 0.00019 4.1E-09 44.9 3.1 32 21-54 1-32 (33)
65 PF01462 LRRNT: Leucine rich r 97.3 0.00016 3.6E-09 43.2 2.1 28 21-50 1-28 (28)
66 KOG3665|consensus 97.3 0.00023 5.1E-09 78.3 4.7 132 51-184 122-263 (699)
67 KOG2739|consensus 97.2 0.00015 3.3E-09 67.8 1.6 107 72-181 41-153 (260)
68 KOG2123|consensus 97.2 3E-05 6.4E-10 72.6 -3.0 101 73-177 18-123 (388)
69 KOG2123|consensus 96.7 9.9E-05 2.1E-09 69.2 -4.1 84 97-184 18-101 (388)
70 KOG4341|consensus 96.6 7.9E-05 1.7E-09 73.8 -5.8 60 244-303 318-381 (483)
71 KOG4341|consensus 96.1 0.00029 6.3E-09 69.9 -4.7 59 243-301 291-353 (483)
72 KOG2739|consensus 96.0 0.0041 8.8E-08 58.4 2.5 86 97-184 42-129 (260)
73 PF00560 LRR_1: Leucine Rich R 95.7 0.007 1.5E-07 33.8 1.5 18 414-431 1-18 (22)
74 PF13504 LRR_7: Leucine rich r 95.4 0.009 2E-07 31.0 1.3 17 413-429 1-17 (17)
75 PF00560 LRR_1: Leucine Rich R 95.4 0.0078 1.7E-07 33.7 1.1 16 76-91 2-17 (22)
76 PF01463 LRRCT: Leucine rich r 95.0 0.0072 1.6E-07 35.0 0.1 24 512-536 2-25 (25)
77 smart00370 LRR Leucine-rich re 94.9 0.018 3.8E-07 33.7 1.6 23 412-434 1-23 (26)
78 smart00369 LRR_TYP Leucine-ric 94.9 0.018 3.8E-07 33.7 1.6 23 412-434 1-23 (26)
79 KOG1947|consensus 94.3 0.012 2.5E-07 63.3 0.0 112 72-183 186-307 (482)
80 KOG1947|consensus 93.9 0.019 4.1E-07 61.7 0.4 233 51-306 188-439 (482)
81 smart00369 LRR_TYP Leucine-ric 93.8 0.056 1.2E-06 31.5 2.2 21 98-118 2-22 (26)
82 smart00370 LRR Leucine-rich re 93.8 0.056 1.2E-06 31.5 2.2 21 98-118 2-22 (26)
83 PF13504 LRR_7: Leucine rich r 93.0 0.064 1.4E-06 27.8 1.4 12 76-87 3-14 (17)
84 KOG3864|consensus 92.5 0.023 5E-07 51.4 -1.2 39 338-376 100-138 (221)
85 KOG0473|consensus 92.4 0.0042 9.1E-08 57.1 -6.0 82 73-157 41-122 (326)
86 KOG0473|consensus 90.9 0.005 1.1E-07 56.6 -7.2 93 86-182 30-122 (326)
87 smart00364 LRR_BAC Leucine-ric 88.1 0.31 6.8E-06 28.2 1.3 18 413-430 2-19 (26)
88 KOG4308|consensus 87.0 0.012 2.5E-07 62.3 -9.0 39 246-284 262-304 (478)
89 smart00365 LRR_SD22 Leucine-ri 85.2 0.72 1.6E-05 26.9 1.8 18 412-429 1-18 (26)
90 KOG3864|consensus 82.5 0.27 5.8E-06 44.7 -1.1 81 99-180 102-185 (221)
91 PF13516 LRR_6: Leucine Rich r 78.1 1.5 3.2E-05 24.8 1.4 14 413-426 2-15 (24)
92 KOG4308|consensus 66.1 0.23 5E-06 52.7 -6.9 160 51-212 115-305 (478)
93 smart00368 LRR_RI Leucine rich 64.5 5.3 0.00011 23.6 1.7 12 437-448 3-14 (28)
94 KOG3763|consensus 62.9 3.2 7E-05 43.7 0.9 62 388-450 218-284 (585)
95 PF05568 ASFV_J13L: African sw 58.4 7.8 0.00017 32.7 2.2 31 554-584 43-74 (189)
96 PF01102 Glycophorin_A: Glycop 54.7 5.1 0.00011 33.6 0.6 17 553-569 78-94 (122)
97 PF11770 GAPT: GRB2-binding ad 52.6 10 0.00022 32.5 2.0 14 552-565 21-34 (158)
98 KOG3763|consensus 52.5 7.3 0.00016 41.2 1.4 65 70-136 214-284 (585)
99 TIGR00864 PCC polycystin catio 43.7 17 0.00036 46.3 2.8 32 228-259 1-32 (2740)
100 PF02009 Rifin_STEVOR: Rifin/s 43.4 14 0.00031 36.4 1.8 18 551-568 266-283 (299)
101 smart00367 LRR_CC Leucine-rich 43.0 15 0.00032 21.1 1.1 12 388-399 2-13 (26)
102 PHA03099 epidermal growth fact 42.6 24 0.00053 29.4 2.7 22 508-529 63-84 (139)
103 PF01299 Lamp: Lysosome-associ 41.6 15 0.00033 36.7 1.7 16 553-568 284-299 (306)
104 PTZ00370 STEVOR; Provisional 41.3 11 0.00024 36.3 0.6 16 559-574 275-290 (296)
105 TIGR01478 STEVOR variant surfa 38.3 11 0.00024 36.2 0.2 14 559-572 279-292 (295)
106 KOG4242|consensus 30.8 1.6E+02 0.0035 31.0 6.9 239 41-284 177-454 (553)
107 PF08693 SKG6: Transmembrane a 29.1 19 0.00042 23.4 0.1 7 560-566 32-38 (40)
108 PF14575 EphA2_TM: Ephrin type 28.3 37 0.00081 25.7 1.6 8 593-600 46-53 (75)
109 PF06024 DUF912: Nucleopolyhed 22.3 68 0.0015 26.0 2.1 26 541-566 63-88 (101)
110 PF01034 Syndecan: Syndecan do 22.2 26 0.00055 25.5 -0.3 7 560-566 30-36 (64)
111 PF08114 PMP1_2: ATPase proteo 20.5 30 0.00065 22.4 -0.2 13 552-564 21-33 (43)
No 1
>KOG4194|consensus
Probab=100.00 E-value=1.9e-55 Score=435.89 Aligned_cols=448 Identities=27% Similarity=0.391 Sum_probs=399.7
Q ss_pred CCCCCceecCCceEEEecCCCCccc-----cCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccc
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVV-----PIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNF 94 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~i-----p~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f 94 (608)
.||..|.|. ....+|++..+..+ +..+|+.++.|++++|++..+.. .|.++++|+.+++..|.++.||. .-
T Consensus 45 ~cpa~c~c~--~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~-f~ 121 (873)
T KOG4194|consen 45 ECPATCPCN--TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR-FG 121 (873)
T ss_pred cCCCcCCCC--ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc-cc
Confidence 699999995 46899999999886 77789999999999999999875 67899999999999999999986 23
Q ss_pred cccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330 95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174 (608)
Q Consensus 95 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 174 (608)
+...+|+.|+|.+|.|+.+...++..++.|+.||||.|.|+.++...|..-.++++|+|++|.|+.+. .+.|.++.+|.
T Consensus 122 ~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~ 200 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLL 200 (873)
T ss_pred ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchhe
Confidence 44556999999999999999999999999999999999999999999999899999999999999998 89999999999
Q ss_pred EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEecc
Q psy3330 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254 (608)
Q Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 254 (608)
+|.|+.|+++.+|...|.++++ |+.|+|..|+|..+....|.+ +++|+.|.+..|.+..+..+.|.++.++++|+|+
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~--L~~LdLnrN~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPK--LESLDLNRNRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred eeecccCcccccCHHHhhhcch--hhhhhccccceeeehhhhhcC-chhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 9999999999999999999954 999999999999888888998 9999999999999999999999999999999999
Q ss_pred CCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccC
Q psy3330 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT 334 (608)
Q Consensus 255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~ 334 (608)
.|+++.+..+++.+++.|+.|++|+|.|..+...+|+.+++|+.|+|+.+. +.. +++.-+.
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~--------l~~~sf~---------- 338 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITR--------LDEGSFR---------- 338 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-ccc--------CChhHHH----------
Confidence 999999999999999999999999999999999999999999999996432 211 1111000
Q ss_pred CCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcC---ChhhhcCCcccceeecccCccccccCcccCCC
Q psy3330 335 PLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI---DQRAFVDNIQLETVIINENMNLKQLPSKLFQG 411 (608)
Q Consensus 335 ~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~---~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~ 411 (608)
....+++|+|++|.+..+...+|..+++|+.|+++. |.+... ...+|.++++|+.|++.+|+ ++.||..+|.+
T Consensus 339 --~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsg 414 (873)
T KOG4194|consen 339 --VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSG 414 (873)
T ss_pred --HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCce-eeecchhhhcc
Confidence 011458999999999999999999999999999987 655432 45689999999999999998 99999999999
Q ss_pred CCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccc
Q psy3330 412 NTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTE 491 (608)
Q Consensus 412 l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (608)
+++|+.|||.+|.|.+|.+..|.-..|++|-+..-.|-|||+++|+.+|+..+..
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l------------------------- 469 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKL------------------------- 469 (873)
T ss_pred CcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhccc-------------------------
Confidence 9999999999999999999988544999999999999999999999999974311
Q ss_pred hhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330 492 AQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538 (608)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~ 538 (608)
.......|++|+++.|+.+..++..++.|++.
T Consensus 470 ---------------q~sv~a~CayPe~Lad~~i~svd~~~lvC~Ds 501 (873)
T KOG4194|consen 470 ---------------QSSVIAKCAYPEPLADQSIVSVDTANLVCDDS 501 (873)
T ss_pred ---------------ccceeeeccCCcccccceeEeechhhceecCC
Confidence 12235689999999999999999999999864
No 2
>KOG4237|consensus
Probab=100.00 E-value=3e-43 Score=334.87 Aligned_cols=366 Identities=31% Similarity=0.456 Sum_probs=265.4
Q ss_pred cCCCCCCceecC-CceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccc
Q psy3330 19 KAICPSRCQCFD-QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEY 96 (608)
Q Consensus 19 ~~~Cp~~C~c~~-~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~ 96 (608)
+.+||.+|.|.+ ....|+|+++++++||.++|++++.++|..|.|+.||+ +|+.+++|+.|||++|+|+.|.+++|.+
T Consensus 34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 34 ASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred cccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 568999999985 45689999999999999999999999999999999986 8889999999999999999999999999
Q ss_pred cccccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330 97 QNKLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175 (608)
Q Consensus 97 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 175 (608)
++.|.+|-+-+ |+|+.++.++|.+|.+|+.|.+.-|++..+..++|..+++|..|.+..|.+..+. ...|..+..++.
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~t 192 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKT 192 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-cccccchhccch
Confidence 98888877766 8899999999999999999999999998888889999999999999999888886 667888888888
Q ss_pred EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCC-CccC-EEec
Q psy3330 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL-RTLH-SLDL 253 (608)
Q Consensus 176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~-~L~L 253 (608)
+.+..|.+... .+++. +... +.-| +..+++ ..-..-..+.+.++..+.+..|... .++. .+..
T Consensus 193 lhlA~np~icd-----CnL~w--la~~-~a~~------~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 193 LHLAQNPFICD-----CNLPW--LADD-LAMN------PIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred HhhhcCccccc-----cccch--hhhH-Hhhc------hhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 88877764321 11110 1000 0000 111111 2223333344444444444443221 1111 1111
Q ss_pred cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccccccccc
Q psy3330 254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSL 333 (608)
Q Consensus 254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~ 333 (608)
..+....-|...|+.+++|+.|+|++|+++.+.+.+|
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF------------------------------------------- 294 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF------------------------------------------- 294 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh-------------------------------------------
Confidence 2222333444455555555555555555555544444
Q ss_pred CCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCC
Q psy3330 334 TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNT 413 (608)
Q Consensus 334 ~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~ 413 (608)
.+...+++|.|..|+ +..+...+|.++.
T Consensus 295 ---------------------------------------------------e~~a~l~eL~L~~N~-l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 295 ---------------------------------------------------EGAAELQELYLTRNK-LEFVSSGMFQGLS 322 (498)
T ss_pred ---------------------------------------------------cchhhhhhhhcCcch-HHHHHHHhhhccc
Confidence 344555566666786 8888888999999
Q ss_pred CCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccch
Q psy3330 414 NLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEA 492 (608)
Q Consensus 414 ~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (608)
.|+.|+|.+|+|+.+.++.| .+.+|.+|+|-.|||.|||.+.|+..|++.+.
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--------------------------- 375 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--------------------------- 375 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC---------------------------
Confidence 99999999999999988888 58899999999999999999999999998431
Q ss_pred hhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCC
Q psy3330 493 QRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES 537 (608)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~ 537 (608)
...+..|..|..+++.++.+++..++.|..
T Consensus 376 ---------------~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~ 405 (498)
T KOG4237|consen 376 ---------------VVGNPRCQSPGFVRQIPISDVAFGDFRCGG 405 (498)
T ss_pred ---------------CCCCCCCCCCchhccccchhccccccccCC
Confidence 123567888888888888888877777653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-40 Score=383.63 Aligned_cols=380 Identities=24% Similarity=0.222 Sum_probs=173.9
Q ss_pred cccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCC
Q psy3330 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH 147 (608)
Q Consensus 68 ~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 147 (608)
..++++++|++|++++|.+....+..|.++++|++|+|++|.+....+..+.++++|++|+|++|.+.+..+..+.++++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 34444444444444444444333334444444444444444444433344444444444444444444444444444444
Q ss_pred CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL 227 (608)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 227 (608)
|++|++++|.+.+.. |..+.++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+.. +++|+.|
T Consensus 238 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L 313 (968)
T PLN00113 238 LNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL--QKLISLDLSDNSLSGEIPELVIQ-LQNLEIL 313 (968)
T ss_pred CCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhc--cCcCEEECcCCeeccCCChhHcC-CCCCcEE
Confidence 555555444444333 3444444444444444444443333333333 23444555444444444444443 4445555
Q ss_pred EccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCC-
Q psy3330 228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN- 306 (608)
Q Consensus 228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~- 306 (608)
++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+++.++.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 5555544444444444444555555555544433333444444444444444444443333333333333333322110
Q ss_pred ------------CCC---CCcccccCCchhhhcccc---------------cccc-cc------------------CCCC
Q psy3330 307 ------------LDS---IDQPLSLSLPPLLLSLSI---------------PLAF-SL------------------TPLG 337 (608)
Q Consensus 307 ------------l~~---~~~~~~~~lp~~~~~~~~---------------~~~~-~~------------------~~~~ 337 (608)
+.. ..+.+.+.+|..+..++. +..+ .+ ...+
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 473 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc
Confidence 000 011122222221111000 0000 00 0001
Q ss_pred CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCE
Q psy3330 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417 (608)
Q Consensus 338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~ 417 (608)
..+++.|++++|++++..+..|.++++|+.|+++. +.+....+..|.++++|++|+|++|.+.+.+|.. |.++++|+.
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~ 551 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE-NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQ 551 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcC-CcceeeCChHHcCccCCCEEECCCCcccccCChh-HhCcccCCE
Confidence 12345555555555555555555566666666655 4555555555556666666666666533444443 555666666
Q ss_pred EEcCCCccc-ccCCCCCCCCCCCEEEccCCccccccC
Q psy3330 418 VSLKGNSLS-HLEASHFPLERISFLDLSDNPLHCDCN 453 (608)
Q Consensus 418 L~L~~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~ 453 (608)
|+|++|+++ .+|..+..+++|+.+++++|++.|.++
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 666666665 455555555566666666666665544
No 4
>KOG4194|consensus
Probab=100.00 E-value=2.4e-42 Score=342.94 Aligned_cols=399 Identities=25% Similarity=0.336 Sum_probs=352.0
Q ss_pred CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccc-c-CCCccEEEeeCCCCcccCcccccccc
Q psy3330 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLS-F-YIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~-~-~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
|-..|.|.. ..++|........|...+...+.|+.+++.+..+.. .+. . .+.-++||+++|.++.+....|.+++
T Consensus 25 ~~g~~~~~g--~vvd~ga~~~~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~ 102 (873)
T KOG4194|consen 25 LIGLCHCVG--NVVDAGAGDLSECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP 102 (873)
T ss_pred HHHHHHhcC--cccccCCCccccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC
Confidence 445677754 468899998999999999999999999999988753 222 2 23456899999999999999999999
Q ss_pred cccEEEccCCCCCCCChhhhcCC-CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330 99 KLLNLNISYNEISALSKDTFKGL-KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 177 (608)
+|+++++..|.++.||. |++. .+|+.|+|.+|.|+.+....+..++.|+.|||+.|.|++++ ...|..-.++++|+
T Consensus 103 nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIKKLN 179 (873)
T ss_pred cceeeeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCceEEe
Confidence 99999999999999985 5554 55999999999999999999999999999999999999998 67788889999999
Q ss_pred ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257 (608)
Q Consensus 178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 257 (608)
|++|+++.+..+.|..+ .+|..|.|++|+++.++...|.. +++|+.|+|..|++..+....|.++++|+.|.|..|.
T Consensus 180 La~N~It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk~-L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFKR-LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred ecccccccccccccccc--chheeeecccCcccccCHHHhhh-cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 99999999999999999 57999999999999999999997 9999999999999998878899999999999999999
Q ss_pred CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCC
Q psy3330 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337 (608)
Q Consensus 258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 337 (608)
+..+..++|.++.++++|+|..|+++.+..+++.++++|+.|+++++. +..+. +..+ .-
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih-------~d~W-------------sf 315 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIH-------IDSW-------------SF 315 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheee-------cchh-------------hh
Confidence 999999999999999999999999999999999999999999997532 11110 0000 01
Q ss_pred CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCc--ccCCCCCCC
Q psy3330 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS--KLFQGNTNL 415 (608)
Q Consensus 338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~--~~f~~l~~L 415 (608)
..++++|+|++|+|+.+++..|..|+.|+.|+++. |.+..+...+|.++++|++|||++|.....|.+ .+|.++++|
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 22568999999999999999999999999999999 999999999999999999999999985555543 569999999
Q ss_pred CEEEcCCCcccccCCCCC-CCCCCCEEEccCCcccc
Q psy3330 416 KSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC 450 (608)
Q Consensus 416 ~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~C 450 (608)
+.|+|.+|+|..||...| .+..|+.|||.+|++.-
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 999999999999998887 69999999999999853
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-36 Score=350.25 Aligned_cols=394 Identities=26% Similarity=0.246 Sum_probs=277.5
Q ss_pred ccccEEEeccCCCc-cccccc-ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEee
Q psy3330 51 PEVQTIILRENRIS-NVHYTL-SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128 (608)
Q Consensus 51 ~~l~~L~L~~n~i~-~l~~~~-~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 128 (608)
++++.|+|++|.+. .+|..+ ..+++|++|+|++|++++..+. ..+++|++|+|++|.++...+..++++++|++|+
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 68999999999997 577654 4889999999999988754332 3567888888888888766667788888888888
Q ss_pred ccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCC
Q psy3330 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208 (608)
Q Consensus 129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~ 208 (608)
+++|.+.+..|..+.++++|++|++++|.+.+.. |..++++++|++|++++|++.+..+..+..+ ++|++|++++|.
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~ 247 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYNN 247 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcC--CCCCEEECcCce
Confidence 8888887777778888888888888888887665 6778888888888888888876666666666 558888888888
Q ss_pred CccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288 (608)
Q Consensus 209 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 288 (608)
+.+..+..+.. +++|+.|++++|.+.+..|..+.++++|++|++++|.+++..+..+.++++|+.|++++|.+++..+.
T Consensus 248 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 248 LTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 87777777776 77888888888877776677777777788888888777765556777777777777777777777777
Q ss_pred hhCCCCCCceeeccCCCCCCC----------------CCcccccCCchhhhcccccccc--------ccCC---CCCcee
Q psy3330 289 AFKSLFSLKLVKINLIPNLDS----------------IDQPLSLSLPPLLLSLSIPLAF--------SLTP---LGTLKC 341 (608)
Q Consensus 289 ~f~~l~~L~~L~l~~~~~l~~----------------~~~~~~~~lp~~~~~~~~~~~~--------~~~~---~~~~~l 341 (608)
.+..+++|+.|+++.+..... ..+.+.+.+|..+......... ...+ ....++
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 777777777777754321110 1122222333322111000000 0000 011245
Q ss_pred cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421 (608)
Q Consensus 342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~ 421 (608)
+.|++++|++++..+..|..++.|+.++++. +.+....+..+..+++|+.|++++|++.+.+|.. + +.++|+.|+++
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~-~~~~L~~L~ls 483 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISN-NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-F-GSKRLENLDLS 483 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcC-CcccCccChhhccCCCCcEEECcCceeeeecCcc-c-ccccceEEECc
Confidence 6777777777776666777777777777776 5666666666667777888888877755666653 3 45788888888
Q ss_pred CCccc-ccCCCCCCCCCCCEEEccCCccccccC
Q psy3330 422 GNSLS-HLEASHFPLERISFLDLSDNPLHCDCN 453 (608)
Q Consensus 422 ~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~ 453 (608)
+|+++ .+|..+..+++|+.|++++|.+.+..+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 88887 445555567888889999998887655
No 6
>KOG0472|consensus
Probab=99.97 E-value=7.6e-34 Score=271.10 Aligned_cols=380 Identities=24% Similarity=0.365 Sum_probs=232.3
Q ss_pred cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330 52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 131 (608)
.+++|++.+|++.++|++++.+..++.++.++|+++.+|+ .+..+..|..|+.++|.+..+++ .++.+..|..++..+
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNELKELPD-SIGRLLDLEDLDATN 146 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccceeecCc-hHHHHhhhhhhhccc
Confidence 4566666666666666666666666666666666666665 45556666666666666666664 355566666666666
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
|+++.+++ .+..+.+|..+++.+|++...+ +..+. ++.|++|+...|-+..+|+. ++.+ .+|+.|++..|++..
T Consensus 147 N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~-~~~i~-m~~L~~ld~~~N~L~tlP~~-lg~l--~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 147 NQISSLPE-DMVNLSKLSKLDLEGNKLKALP-ENHIA-MKRLKHLDCNSNLLETLPPE-LGGL--ESLELLYLRRNKIRF 220 (565)
T ss_pred cccccCch-HHHHHHHHHHhhccccchhhCC-HHHHH-HHHHHhcccchhhhhcCChh-hcch--hhhHHHHhhhccccc
Confidence 66666643 3445566666777777766665 44444 67777777777777777665 4445 557777777777777
Q ss_pred ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330 212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291 (608)
Q Consensus 212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~ 291 (608)
++ .|++ ++.|++|+.+.|.++.++.....++.++..|||.+|+++++|. .+.-+++|+.||+|+|.++++++. ++
T Consensus 221 lP--ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~rLDlSNN~is~Lp~s-Lg 295 (565)
T KOG0472|consen 221 LP--EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLERLDLSNNDISSLPYS-LG 295 (565)
T ss_pred CC--CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhhhhcccCCccccCCcc-cc
Confidence 65 6666 7777788888777777666666677888888888888888874 456677888888888888877654 67
Q ss_pred CCCCCceeeccCCCCC------------------------CCCCcccc-----cCCchhhh------------ccc----
Q psy3330 292 SLFSLKLVKINLIPNL------------------------DSIDQPLS-----LSLPPLLL------------SLS---- 326 (608)
Q Consensus 292 ~l~~L~~L~l~~~~~l------------------------~~~~~~~~-----~~lp~~~~------------~~~---- 326 (608)
++ +|+.|-+.++|-- +...+... +..|+..+ +.+
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 77 7777777766510 00111111 11111100 000
Q ss_pred --ccc-ccccCCCCCceecEEecCCCCCCCcCh-----------------------hhhcccccccccccccCCCCCcCC
Q psy3330 327 --IPL-AFSLTPLGTLKCDRLDLSGNNFSNIDS-----------------------VAFKSLFSLKLVKINLIPNLDSID 380 (608)
Q Consensus 327 --~~~-~~~~~~~~~~~l~~L~ls~n~l~~~~~-----------------------~~~~~l~~L~~l~l~~~~~l~~~~ 380 (608)
+|. .|..... --+...+++.|++..+|. ..+..++.|..|+++. |-+..+
T Consensus 375 t~VPdEVfea~~~--~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~L- 450 (565)
T KOG0472|consen 375 TLVPDEVFEAAKS--EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDL- 450 (565)
T ss_pred ccCCHHHHHHhhh--cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhc-
Confidence 000 0000000 001223333333333221 2233444444444442 222222
Q ss_pred hhhhcCCcccceeecccCc----------------------cccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCC
Q psy3330 381 QRAFVDNIQLETVIINENM----------------------NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI 438 (608)
Q Consensus 381 ~~~f~~l~~L~~L~Ls~N~----------------------~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 438 (608)
+..++++..|++|++|.|+ .++.++..-+.++.+|..|||.+|.|..||+.+..+.+|
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNL 530 (565)
T ss_pred chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccce
Confidence 2223333444444444443 266666665788999999999999999999999999999
Q ss_pred CEEEccCCccc
Q psy3330 439 SFLDLSDNPLH 449 (608)
Q Consensus 439 ~~L~L~~N~~~ 449 (608)
++|+++||||.
T Consensus 531 ~hLeL~gNpfr 541 (565)
T KOG0472|consen 531 RHLELDGNPFR 541 (565)
T ss_pred eEEEecCCccC
Confidence 99999999998
No 7
>KOG0444|consensus
Probab=99.96 E-value=5.2e-32 Score=271.25 Aligned_cols=357 Identities=25% Similarity=0.323 Sum_probs=276.5
Q ss_pred eEEEecCCCCc--cccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCC
Q psy3330 33 LEASCTDAGLE--VVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN 108 (608)
Q Consensus 33 ~~v~C~~~~l~--~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n 108 (608)
+.|+-++.++. ..|.++- ..+++|.|...++..+|+.++.+.+|++|.+++|++..+.- .++.++.|+.+++.+|
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG-ELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG-ELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh-hhccchhhHHHhhhcc
Confidence 45666666554 4555542 57888999989999999989999999999999999887764 5778889999999998
Q ss_pred CCC--CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330 109 EIS--ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186 (608)
Q Consensus 109 ~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 186 (608)
++. +||++. -.+..|..||||+|++... |..+...+++-+|+|++|+|..++ ...|.++..|-.|+|++|++..+
T Consensus 89 ~LKnsGiP~di-F~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 89 NLKNSGIPTDI-FRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred ccccCCCCchh-cccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchhhhc
Confidence 876 677654 4688899999999999887 456667788889999999999987 67788889999999999999988
Q ss_pred CcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCC-ccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS-FINESSFVTLRTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 187 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 265 (608)
|+.. ..+ ..|++|.|++|.+....-..++. +++|+.|.+++.+-+ .-.|.++.++.+|..+|+|.|.+..+| ++
T Consensus 166 PPQ~-RRL--~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ec 240 (1255)
T KOG0444|consen 166 PPQI-RRL--SMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-EC 240 (1255)
T ss_pred CHHH-HHH--hhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HH
Confidence 8863 455 44889999998887766666776 888888888877533 223567888889999999999998887 57
Q ss_pred hhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEe
Q psy3330 266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLD 345 (608)
Q Consensus 266 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ 345 (608)
+..+++|+.|+||+|+|+.+... .....+| +.|+
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~-~~~W~~l---------------------------------------------EtLN 274 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMT-EGEWENL---------------------------------------------ETLN 274 (1255)
T ss_pred HhhhhhhheeccCcCceeeeecc-HHHHhhh---------------------------------------------hhhc
Confidence 88889999999999988876532 1222233 5566
Q ss_pred cCCCCCCCcChhhhcccccccccccccCCCCCcC-ChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCc
Q psy3330 346 LSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI-DQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424 (608)
Q Consensus 346 ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~-~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~ 424 (608)
+|.|+++.+| .++..++.|+.|..+. |++.-- .+..++.+.+|+.+..++|+ +.-+|.+ +..+.+|+.|.|+.|+
T Consensus 275 lSrNQLt~LP-~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEg-lcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 275 LSRNQLTVLP-DAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEG-LCRCVKLQKLKLDHNR 350 (1255)
T ss_pred cccchhccch-HHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchh-hhhhHHHHHhcccccc
Confidence 6777777765 4566777777777665 444322 24556778888889998886 8888887 7788999999999999
Q ss_pred ccccCCCCCCCCCCCEEEccCCcc
Q psy3330 425 LSHLEASHFPLERISFLDLSDNPL 448 (608)
Q Consensus 425 l~~l~~~~~~l~~L~~L~L~~N~~ 448 (608)
+-++|+.+.-++.|+.||+..||=
T Consensus 351 LiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred eeechhhhhhcCCcceeeccCCcC
Confidence 999998888888899999999884
No 8
>KOG0472|consensus
Probab=99.95 E-value=3.7e-31 Score=252.81 Aligned_cols=375 Identities=26% Similarity=0.330 Sum_probs=301.2
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
..++.+.+++|.+..+.+.+.++..|..|++.+|++...|+ +++.+.+++.|+.++|++..+++ .+..+.+|+.++.+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhcc
Confidence 35788999999999999999999999999999999999998 68889999999999999999985 58889999999999
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
+|.+..++ +.++.+..|+.++..+|+++.. |+.+.++.+|..+++.+|++..+++..+. + +.|++|+...|.++
T Consensus 123 ~n~~~el~-~~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m--~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 123 SNELKELP-DSIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEGNKLKALPENHIA-M--KRLKHLDCNSNLLE 196 (565)
T ss_pred ccceeecC-chHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccccchhhCCHHHHH-H--HHHHhcccchhhhh
Confidence 99999885 4567788999999999999998 57788999999999999999999998776 5 67999999999998
Q ss_pred cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290 (608)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f 290 (608)
.+++ .+++ +.+|..|++..|++...+ .|.+++.|++++++.|+++.+|.+...+++++..||+.+|+++..+.+ +
T Consensus 197 tlP~-~lg~-l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~ 271 (565)
T KOG0472|consen 197 TLPP-ELGG-LESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-I 271 (565)
T ss_pred cCCh-hhcc-hhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-H
Confidence 8865 4555 899999999999999875 799999999999999999999998899999999999999999998766 5
Q ss_pred CCCCCCceeeccCCCCCCCCCcccccCCchhhhccc----------------------------------------ccc-
Q psy3330 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS----------------------------------------IPL- 329 (608)
Q Consensus 291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~----------------------------------------~~~- 329 (608)
.-+++|+.|+++.+. + ..+|..+.++. .+.
T Consensus 272 clLrsL~rLDlSNN~-i--------s~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 272 CLLRSLERLDLSNND-I--------SSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred HHhhhhhhhcccCCc-c--------ccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 678899999996432 1 11222211110 000
Q ss_pred ----ccccCC------CCCceecEEecCCCCCCCcChhhhccccc--ccccccccCCCCCcCChhhhcCCcccc-eeecc
Q psy3330 330 ----AFSLTP------LGTLKCDRLDLSGNNFSNIDSVAFKSLFS--LKLVKINLIPNLDSIDQRAFVDNIQLE-TVIIN 396 (608)
Q Consensus 330 ----~~~~~~------~~~~~l~~L~ls~n~l~~~~~~~~~~l~~--L~~l~l~~~~~l~~~~~~~f~~l~~L~-~L~Ls 396 (608)
.....+ ....+.+.|++++-+++.+|.+.|..-.+ ....+++. |.+..++.+ +..+..+. .+.++
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~-L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKR-LVELKELVTDLVLS 420 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc-chHhhhhhh-hHHHHHHHHHHHhh
Confidence 000000 00124478999999999999998876542 44555555 555555433 22233443 45666
Q ss_pred cCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccc
Q psy3330 397 ENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCD 451 (608)
Q Consensus 397 ~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~Cd 451 (608)
+|. ++.+|.. +..+++|..|+|++|-+..+|..++.+..|+.++++.|.|.|-
T Consensus 421 nn~-isfv~~~-l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 421 NNK-ISFVPLE-LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred cCc-cccchHH-HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc
Confidence 664 7777765 7889999999999999999999999998999999999999884
No 9
>KOG0444|consensus
Probab=99.94 E-value=5.5e-29 Score=249.67 Aligned_cols=334 Identities=25% Similarity=0.327 Sum_probs=270.5
Q ss_pred EEecCCCCccccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCC
Q psy3330 35 ASCTDAGLEVVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEI 110 (608)
Q Consensus 35 v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i 110 (608)
+.-....+..+|..+. .+++.|.+.+|++..+.-.++.++.|+.+++.+|++. +||++.| .+..|+.||||+|++
T Consensus 37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQL 115 (1255)
T ss_pred EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhh
Confidence 4456677888998875 5899999999999999888999999999999999885 5887655 589999999999999
Q ss_pred CCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc
Q psy3330 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190 (608)
Q Consensus 111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 190 (608)
.+.|. .+...+++-.|+||+|+|..|+...|.+++.|-+|||++|++..++ ..+..+..|++|.|++|.+....-.-
T Consensus 116 ~EvP~-~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP--PQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 116 REVPT-NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP--PQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhcch-hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC--HHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 99985 4778899999999999999999999999999999999999999985 45888999999999999876544333
Q ss_pred ccCCCCCCceEEEccCCCCc-cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCC
Q psy3330 191 LSNLPHQSLHYLYLNENLIE-TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL 269 (608)
Q Consensus 191 ~~~l~~~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l 269 (608)
+..+ ++|+.|.+++.+-+ ...|..+.. +.+|..++++.|.+..+ |..+..+.+|+.|+||+|+++++.. ..+.-
T Consensus 193 LPsm--tsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~-~~~~W 267 (1255)
T KOG0444|consen 193 LPSM--TSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM-TEGEW 267 (1255)
T ss_pred Cccc--hhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec-cHHHH
Confidence 3344 66888999886543 234556665 89999999999999866 6788899999999999999999874 45566
Q ss_pred CCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCC
Q psy3330 270 SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349 (608)
Q Consensus 270 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n 349 (608)
.+|++|++|.|+++.++ .++..+++|+.|..+ +|
T Consensus 268 ~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n---------------------------------------------~N 301 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLP-DAVCKLTKLTKLYAN---------------------------------------------NN 301 (1255)
T ss_pred hhhhhhccccchhccch-HHHhhhHHHHHHHhc---------------------------------------------cC
Confidence 78999999999999875 557888888776663 34
Q ss_pred CCC--CcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCC-ccc
Q psy3330 350 NFS--NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN-SLS 426 (608)
Q Consensus 350 ~l~--~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N-~l~ 426 (608)
+++ |+ |..++.+.+|+.+...+ |+++ +-+..+..|..|+.|.|++|+ +-.+|.. +.-++.|+.||+++| ++.
T Consensus 302 kL~FeGi-PSGIGKL~~Levf~aan-N~LE-lVPEglcRC~kL~kL~L~~Nr-LiTLPea-IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 302 KLTFEGI-PSGIGKLIQLEVFHAAN-NKLE-LVPEGLCRCVKLQKLKLDHNR-LITLPEA-IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cccccCC-ccchhhhhhhHHHHhhc-cccc-cCchhhhhhHHHHHhcccccc-eeechhh-hhhcCCcceeeccCCcCcc
Confidence 332 33 34566777777776664 4443 445677889999999999998 7789986 788999999999999 454
Q ss_pred cc
Q psy3330 427 HL 428 (608)
Q Consensus 427 ~l 428 (608)
.-
T Consensus 377 MP 378 (1255)
T KOG0444|consen 377 MP 378 (1255)
T ss_pred CC
Confidence 33
No 10
>KOG4237|consensus
Probab=99.92 E-value=1.4e-27 Score=228.14 Aligned_cols=273 Identities=25% Similarity=0.257 Sum_probs=218.0
Q ss_pred CceEEEecCCCCccccCccC---ccccEEEeccCCCcccc-cccccCCCccEEEeeC-CCCcccCcccccccccccEEEc
Q psy3330 31 QKLEASCTDAGLEVVPIQLN---PEVQTIILRENRISNVH-YTLSFYIELRSLDLSV-NKINVLGSHNFEYQNKLLNLNI 105 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~~~---~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~~L~~L~L 105 (608)
+...+.-....++.+|.... +++|+|||++|.|+.|. .+|.++.+|..|-+.+ |+|++++.++|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 55677777888999987654 58999999999999986 4899999988877766 8999999999999999999999
Q ss_pred cCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC-----------chhhhcCCCCcc
Q psy3330 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE-----------DSEIFSSLKSLR 174 (608)
Q Consensus 106 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~~l~~L~ 174 (608)
.-|++..+..++|..+++|..|.+..|.+..+...+|.++..++.+.+..|.+...- .+..++...-.+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999999999999999999999999999999998889999999999999998743211 022233333333
Q ss_pred EEEccCCCCCCCCcccccCCCCCCce-EEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330 175 ILKLDNNQILDVPNNVLSNLPHQSLH-YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253 (608)
Q Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 253 (608)
-..+.+.++..+++..|.... .++. .+....+-...-+...|.. +++|++|++++|+++++.+.+|.+...+++|.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhhhH-HhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 334445555555554443221 1111 1111222222233345666 999999999999999999999999999999999
Q ss_pred cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330 254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305 (608)
Q Consensus 254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~ 305 (608)
..|++..+....|.++..|+.|+|.+|+|+.+.+.+|..+.+|..|++-.+|
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 9999999999999999999999999999999999999999999999995544
No 11
>KOG0618|consensus
Probab=99.92 E-value=3.2e-27 Score=247.69 Aligned_cols=389 Identities=23% Similarity=0.304 Sum_probs=204.1
Q ss_pred eEEEecCCCCccccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330 33 LEASCTDAGLEVVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110 (608)
Q Consensus 33 ~~v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i 110 (608)
+.++-++..+...|..+. +.++.|+++.|.|..+|.+..+..+|++|.|..|.+...|. .+..+.+|++|+++.|.+
T Consensus 48 ~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~-~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 48 KSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPA-SISELKNLQYLDLSFNHF 126 (1081)
T ss_pred EEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCch-hHHhhhcccccccchhcc
Confidence 344444444444444432 34555555555555555555555555555555555544443 344455555555555554
Q ss_pred CCCChhhhcCCCcCcEeeccCC-------------------cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCC
Q psy3330 111 SALSKDTFKGLKELKTLDLSYN-------------------KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLK 171 (608)
Q Consensus 111 ~~~~~~~~~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 171 (608)
..+|. .+..+..+..+..++| .+..-.......+.+ .|+|..|.+.... ..++.
T Consensus 127 ~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d----ls~~~ 199 (1081)
T KOG0618|consen 127 GPIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD----LSNLA 199 (1081)
T ss_pred CCCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh----hhhcc
Confidence 44442 2222222222233322 111111111111111 2555555544221 33444
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEE
Q psy3330 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251 (608)
Q Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 251 (608)
+|+.|....|++..+.... .+++.|+...|.++....... ..+|++++++.|+++.++ .++..+.+|+.+
T Consensus 200 ~l~~l~c~rn~ls~l~~~g------~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~~lp-~wi~~~~nle~l 269 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISG------PSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLSNLP-EWIGACANLEAL 269 (1081)
T ss_pred chhhhhhhhcccceEEecC------cchheeeeccCcceeeccccc---cccceeeecchhhhhcch-HHHHhcccceEe
Confidence 4455544444444332110 345555555555553322221 245666666666666654 556666666666
Q ss_pred eccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccc----------------
Q psy3330 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLS---------------- 315 (608)
Q Consensus 252 ~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~---------------- 315 (608)
+..+|+++.+|. .+....+|+.|++.+|.++.+++. ....++|+.|++..+. +..+...+.
T Consensus 270 ~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 270 NANHNRLVALPL-RISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred cccchhHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc
Confidence 666666655553 333445555555555555555442 2335555555553211 000000000
Q ss_pred -cCCc-------hhh----h-ccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChh
Q psy3330 316 -LSLP-------PLL----L-SLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR 382 (608)
Q Consensus 316 -~~lp-------~~~----~-~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~ 382 (608)
..+| +.+ . +......+-..-.+..+|+.|+|++|++..++...+.++..|+.|++++ |+++.++ .
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp-~ 424 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLP-D 424 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhh-H
Confidence 0000 000 0 0000000000011223678888888888888888888888888888888 8888876 6
Q ss_pred hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccc--cCCCCCCCCCCCEEEccCCcc
Q psy3330 383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH--LEASHFPLERISFLDLSDNPL 448 (608)
Q Consensus 383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~L~~N~~ 448 (608)
....+..|++|...+|+ +...|+ +..++.|+.+|++.|+|+. +|+. .+.++|++||++||.+
T Consensus 425 tva~~~~L~tL~ahsN~-l~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQ-LLSFPE--LAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCCc-eeechh--hhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 67778888888888886 888884 7889999999999999994 4433 3448999999999997
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1e-23 Score=228.53 Aligned_cols=196 Identities=24% Similarity=0.316 Sum_probs=104.1
Q ss_pred ceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330 32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS 111 (608)
Q Consensus 32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~ 111 (608)
...++|++.+++++|..++++++.|++++|+++.+|.. .++|++|++++|+|+.+|.. .++|+.|++++|.++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLT 275 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchh
Confidence 45677777777777777777777777777777776642 35666666666666665531 245566666666555
Q ss_pred CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330 112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191 (608)
Q Consensus 112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 191 (608)
.++. . ..+|+.|++++|+++.++. ..++|+.|++++|+ ++.+|.
T Consensus 276 ~Lp~-l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~-------------------------L~~Lp~--- 319 (788)
T PRK15387 276 HLPA-L---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ-------------------------LASLPA--- 319 (788)
T ss_pred hhhh-c---hhhcCEEECcCCccccccc----cccccceeECCCCc-------------------------cccCCC---
Confidence 5442 1 1345555555555554422 12344444444444 444332
Q ss_pred cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA 271 (608)
Q Consensus 192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~ 271 (608)
++ .+|+.|++++|.+++++. + ..+|+.|++++|+++.+++. ..+|+.|++++|+++.+|.. ..+
T Consensus 320 --lp-~~L~~L~Ls~N~L~~LP~--l---p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~ 383 (788)
T PRK15387 320 --LP-SELCKLWAYNNQLTSLPT--L---PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSG 383 (788)
T ss_pred --Cc-ccccccccccCccccccc--c---ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccc
Confidence 11 224444445554444321 1 12455555555555544321 23455566666666665531 235
Q ss_pred CCEEeccCCCCCccC
Q psy3330 272 LVNLDLSGNNFSNID 286 (608)
Q Consensus 272 L~~L~Ls~N~l~~~~ 286 (608)
|+.|++++|+++.++
T Consensus 384 L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 384 LKELIVSGNRLTSLP 398 (788)
T ss_pred cceEEecCCcccCCC
Confidence 666666666665543
No 13
>KOG0618|consensus
Probab=99.91 E-value=6.9e-26 Score=237.77 Aligned_cols=388 Identities=23% Similarity=0.272 Sum_probs=236.6
Q ss_pred EEecCCCCccccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCC----
Q psy3330 35 ASCTDAGLEVVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN---- 108 (608)
Q Consensus 35 v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n---- 108 (608)
..-+...+..+|.... .+++++.|.+|.+..+|.++..+.+|++||+++|.+..+|.- +..+..++.+..++|
T Consensus 73 ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 73 LNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred cccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhh
Confidence 3344455667776554 589999999999999999999999999999999999888763 334444444444444
Q ss_pred ---------------CCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc
Q psy3330 109 ---------------EISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173 (608)
Q Consensus 109 ---------------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 173 (608)
.+..-....+..+.. .|+|++|.+... .+..+.+|+.+....|++..+.. .-++|
T Consensus 152 ~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~-----~g~~l 221 (1081)
T KOG0618|consen 152 RLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEI-----SGPSL 221 (1081)
T ss_pred hhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEe-----cCcch
Confidence 333222222333333 488999888732 34556777777777777766541 23566
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253 (608)
Q Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 253 (608)
+.|+..+|.++.+... ..| .++++++++.|+++.++ .+... +.+|+.+....|.+..+ +..+...++|+.|..
T Consensus 222 ~~L~a~~n~l~~~~~~---p~p-~nl~~~dis~n~l~~lp-~wi~~-~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDVH---PVP-LNLQYLDISHNNLSNLP-EWIGA-CANLEALNANHNRLVAL-PLRISRITSLVSLSA 294 (1081)
T ss_pred heeeeccCcceeeccc---ccc-ccceeeecchhhhhcch-HHHHh-cccceEecccchhHHhh-HHHHhhhhhHHHHHh
Confidence 7777777766633322 122 45677777777777666 45544 66777777777766544 334445566666666
Q ss_pred cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCC-CceeeccCCCC----------------CCCCCccccc
Q psy3330 254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS-LKLVKINLIPN----------------LDSIDQPLSL 316 (608)
Q Consensus 254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~-L~~L~l~~~~~----------------l~~~~~~~~~ 316 (608)
..|.++.+|+ ...++..|++|+|..|++...++..|..... |+.|+.+.++. +...+|.+..
T Consensus 295 ~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 295 AYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhCCC-cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 6666666664 3445666666666666666655543333221 33333221110 0002333332
Q ss_pred CCchhhhcccccccc-----ccCC-----CC-CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhc
Q psy3330 317 SLPPLLLSLSIPLAF-----SLTP-----LG-TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385 (608)
Q Consensus 317 ~lp~~~~~~~~~~~~-----~~~~-----~~-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~ 385 (608)
..-+.+.....-.+. .+.. .. .-.+++|+||+|+++.++ .....+..|++|.... |.+...+ .+.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahs-N~l~~fP--e~~ 449 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHS-NQLLSFP--ELA 449 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcC-Cceeech--hhh
Confidence 221111111100000 0000 01 114589999999999998 8889999999999887 7777766 788
Q ss_pred CCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCC
Q psy3330 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDN 446 (608)
Q Consensus 386 ~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N 446 (608)
.+++|+.+|+|.|+ +..+--..-..-++|++|||++|.-..++...+ .++++...++.-|
T Consensus 450 ~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 89999999999998 654332211122899999999997554444444 3566666777666
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.7e-20 Score=217.33 Aligned_cols=332 Identities=19% Similarity=0.234 Sum_probs=165.1
Q ss_pred ccccCCCccEEEeeCCCCc-------ccCccccccc-ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChh
Q psy3330 69 TLSFYIELRSLDLSVNKIN-------VLGSHNFEYQ-NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140 (608)
Q Consensus 69 ~~~~~~~L~~L~Ls~n~l~-------~i~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 140 (608)
+|.++++|+.|.+..+... .++. .|..+ ++|+.|++.++.+..+|.. | ...+|+.|++++|++..+. .
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~-~ 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLW-D 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccc-c
Confidence 4555666666666443211 1222 23332 3466666666666555532 3 3456666666666655542 2
Q ss_pred hhCCCCCCcEEEccCCC-CCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCC-CccccCCCc
Q psy3330 141 AFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSF 217 (608)
Q Consensus 141 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~ 217 (608)
.+..+++|+.|+|+++. +..+ | .+..+++|+.|++++|. +..+|. .+..+ ++|+.|++++|. ++.++. .+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~i--p-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L--~~L~~L~L~~c~~L~~Lp~-~i 701 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEI--P-DLSMATNLETLKLSDCSSLVELPS-SIQYL--NKLEDLDMSRCENLEILPT-GI 701 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcC--C-ccccCCcccEEEecCCCCccccch-hhhcc--CCCCEEeCCCCCCcCccCC-cC
Confidence 34555666666665543 3332 2 24555666666666543 233332 34444 346666666542 333322 22
Q ss_pred cccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCC-------CccChhhh
Q psy3330 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF-------SNIDSVAF 290 (608)
Q Consensus 218 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~f 290 (608)
. +++|+.|++++|......|. ..++|+.|++++|.++.+|.. + .+++|+.|++.++.. ..+.+..+
T Consensus 702 -~-l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 -N-LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred -C-CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccccc-c-cccccccccccccchhhccccccccchhhh
Confidence 2 55666666666543222121 134556666666666655532 1 345555555554321 11112222
Q ss_pred CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCC-CCCcChhhhcccccccccc
Q psy3330 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN-FSNIDSVAFKSLFSLKLVK 369 (608)
Q Consensus 291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~l~ 369 (608)
...++|+.|++++++.+ +.+|..+..+ .+|+.|++++|. +..++... ++++|+.|+
T Consensus 775 ~~~~sL~~L~Ls~n~~l--------~~lP~si~~L-------------~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~ 831 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSL--------VELPSSIQNL-------------HKLEHLEIENCINLETLPTGI--NLESLESLD 831 (1153)
T ss_pred hccccchheeCCCCCCc--------cccChhhhCC-------------CCCCEEECCCCCCcCeeCCCC--CccccCEEE
Confidence 23345555555433221 1222222111 134555555542 33333222 456666666
Q ss_pred cccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCC-CcccccCCCCCCCCCCCEEEccCCc
Q psy3330 370 INLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG-NSLSHLEASHFPLERISFLDLSDNP 447 (608)
Q Consensus 370 l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~L~~N~ 447 (608)
++.+..+..++. ...+|+.|+|++|. +..+|.. +..+++|+.|+|++ |+++.+|.....+++|+.+++++++
T Consensus 832 Ls~c~~L~~~p~----~~~nL~~L~Ls~n~-i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 832 LSGCSRLRTFPD----ISTNISDLNLSRTG-IEEVPWW-IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCccccccc----cccccCEeECCCCC-CccChHH-HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 666555544322 12567777777775 6677765 56677777777776 3666777666666667666666543
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.9e-20 Score=216.02 Aligned_cols=310 Identities=20% Similarity=0.208 Sum_probs=164.3
Q ss_pred CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCC-CCCCChhhhcCCCcCcEee
Q psy3330 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-ISALSKDTFKGLKELKTLD 128 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ 128 (608)
|++++.|.+.++.++.+|..+ ...+|+.|++++|++..++. .+..+++|+.|+|+++. +..++ .+..+++|+.|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~ 663 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLK 663 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEE
Confidence 445666666666666666544 34566666666666655544 34556666666666543 34443 255556666666
Q ss_pred ccCCcCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCccEEEccCCCCC-CCCcccccCCCCCCceEEEccC
Q psy3330 129 LSYNKISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSLRILKLDNNQIL-DVPNNVLSNLPHQSLHYLYLNE 206 (608)
Q Consensus 129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~L~~ 206 (608)
|++|......|..+.++++|+.|++++| .+..++ ..+ ++++|+.|++++|... .+|. .+ .+|+.|++++
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i-~l~sL~~L~Lsgc~~L~~~p~-----~~-~nL~~L~L~~ 734 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--TGI-NLKSLYRLNLSGCSRLKSFPD-----IS-TNISWLDLDE 734 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccC--CcC-CCCCCCEEeCCCCCCcccccc-----cc-CCcCeeecCC
Confidence 6665432223445556666666666654 333332 222 4566666666655322 2221 11 3466666666
Q ss_pred CCCccccCCCccccCCCccEEEccCCCCC-------ccCcccccCCCccCEEeccCCcC-CCCChhhhhCCCCCCEEecc
Q psy3330 207 NLIETVLDNSFPFTLTNLHTLALSSNIIS-------FINESSFVTLRTLHSLDLSNNNL-SAIPTKQLSKLSALVNLDLS 278 (608)
Q Consensus 207 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~~l~~L~~L~Ls 278 (608)
|.++.++.. + . +++|+.|.+.++... .+.+..+..+++|+.|++++|.. ..+| ..++++++|+.|+++
T Consensus 735 n~i~~lP~~-~-~-l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 735 TAIEEFPSN-L-R-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIE 810 (1153)
T ss_pred Ccccccccc-c-c-ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECC
Confidence 665554322 1 1 455555555543211 11111222345666666666643 3344 356666677777776
Q ss_pred CCC-CCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChh
Q psy3330 279 GNN-FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357 (608)
Q Consensus 279 ~N~-l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~ 357 (608)
+|. ++.++.. . .+++|+.|+++++..+..+.. ...++++|++++|.++.+|.
T Consensus 811 ~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~------------------------~~~nL~~L~Ls~n~i~~iP~- 863 (1153)
T PLN03210 811 NCINLETLPTG-I-NLESLESLDLSGCSRLRTFPD------------------------ISTNISDLNLSRTGIEEVPW- 863 (1153)
T ss_pred CCCCcCeeCCC-C-CccccCEEECCCCCccccccc------------------------cccccCEeECCCCCCccChH-
Confidence 653 4444332 2 466666666665544332211 01134677777777776653
Q ss_pred hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccccc
Q psy3330 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQL 404 (608)
Q Consensus 358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~l 404 (608)
.+..+++|+.|+++.|+++..++. ....+++|+.+++++|..+..+
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCcccccc
Confidence 466667777777766666666543 3445566666666666544433
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=8.7e-20 Score=199.49 Aligned_cols=245 Identities=23% Similarity=0.336 Sum_probs=198.0
Q ss_pred CceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330 31 QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i 110 (608)
....+++.+.+++.+|..+|++++.|+|++|+++.+|..+. .+|+.|++++|+++.+|... .++|+.|+|++|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCcc
Confidence 34678888899999999999999999999999999997654 58999999999999988643 24799999999999
Q ss_pred CCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc
Q psy3330 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190 (608)
Q Consensus 111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 190 (608)
..++.. +. .+|+.|++++|+++.++. .+. ++|+.|++++|+++.++ ..+. ++|+.|++++|.++.+|...
T Consensus 254 ~~LP~~-l~--s~L~~L~Ls~N~L~~LP~-~l~--~sL~~L~Ls~N~Lt~LP--~~lp--~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 254 TELPER-LP--SALQSLDLFHNKISCLPE-NLP--EELRYLSVYDNSIRTLP--AHLP--SGITHLNVQSNSLTALPETL 323 (754)
T ss_pred CcCChh-Hh--CCCCEEECcCCccCcccc-ccC--CCCcEEECCCCccccCc--ccch--hhHHHHHhcCCccccCCccc
Confidence 998764 33 579999999999998754 332 58999999999999874 3332 47899999999999887543
Q ss_pred ccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCC
Q psy3330 191 LSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS 270 (608)
Q Consensus 191 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~ 270 (608)
+ ++|+.|++++|.+++++. .+ .++|+.|++++|.++.++. .+ .++|+.|++++|+++.+|+... .
T Consensus 324 ----~-~sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~~l~---~ 388 (754)
T PRK15370 324 ----P-PGLKTLEAGENALTSLPA-SL---PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPENLP---A 388 (754)
T ss_pred ----c-ccceeccccCCccccCCh-hh---cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCHhHH---H
Confidence 2 569999999999998654 33 3689999999999987643 33 3689999999999999987533 3
Q ss_pred CCCEEeccCCCCCccChh---hhCCCCCCceeeccCCC
Q psy3330 271 ALVNLDLSGNNFSNIDSV---AFKSLFSLKLVKINLIP 305 (608)
Q Consensus 271 ~L~~L~Ls~N~l~~~~~~---~f~~l~~L~~L~l~~~~ 305 (608)
.|+.|++++|+++.++.. .+..++++..+++.+++
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 699999999999987542 33456788889886544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.3e-19 Score=196.87 Aligned_cols=230 Identities=22% Similarity=0.268 Sum_probs=185.8
Q ss_pred ceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330 32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS 111 (608)
Q Consensus 32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~ 111 (608)
...+.+.+..++.+|. +++++++|++++|+++.+|.. .++|+.|++++|.++.++.. ..+|+.|++++|+++
T Consensus 224 L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 224 ITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGNQLT 295 (788)
T ss_pred CCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc----hhhcCEEECcCCccc
Confidence 4678888899999996 678999999999999999853 46899999999999988762 367999999999999
Q ss_pred CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330 112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191 (608)
Q Consensus 112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 191 (608)
.++. ..++|+.|++++|+++.++. . ..+|+.|++++|.++.++ . + ..+|+.|++++|+++.+|..
T Consensus 296 ~LP~----~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~~LP--~-l--p~~Lq~LdLS~N~Ls~LP~l-- 360 (788)
T PRK15387 296 SLPV----LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLTSLP--T-L--PSGLQELSVSDNQLASLPTL-- 360 (788)
T ss_pred cccc----cccccceeECCCCccccCCC-C---cccccccccccCcccccc--c-c--ccccceEecCCCccCCCCCC--
Confidence 8874 24789999999999998754 1 246889999999998874 2 1 25899999999999998752
Q ss_pred cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA 271 (608)
Q Consensus 192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~ 271 (608)
+ .+++.|++++|.++.++.. ..+|+.|++++|.++.++.. .++|+.|++++|+++++|. . ..+
T Consensus 361 ---p-~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~ 423 (788)
T PRK15387 361 ---P-SELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSG 423 (788)
T ss_pred ---C-cccceehhhccccccCccc-----ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhh
Confidence 2 5689999999999876531 45799999999999876532 3689999999999999884 2 246
Q ss_pred CCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330 272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302 (608)
Q Consensus 272 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~ 302 (608)
|+.|++++|+++.++. .+..+++|+.|+++
T Consensus 424 L~~L~Ls~NqLt~LP~-sl~~L~~L~~LdLs 453 (788)
T PRK15387 424 LLSLSVYRNQLTRLPE-SLIHLSSETTVNLE 453 (788)
T ss_pred hhhhhhccCcccccCh-HHhhccCCCeEECC
Confidence 8899999999998754 47777777666663
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.3e-19 Score=198.08 Aligned_cols=204 Identities=21% Similarity=0.359 Sum_probs=90.6
Q ss_pred cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330 52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 131 (608)
+.+.|+++++.++.+|..+. ++|+.|+|++|+++.+|...+ .+|++|++++|+++.++.. +. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChh-hh--ccccEEECcC
Confidence 34455555555555554332 345555555555555544322 2455555555555554432 21 2455555555
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
|.+..++.. +. .+|+.|++++|+++.++ ..+. .+|+.|++++|+++.+|... + .+|+.|++++|.++.
T Consensus 251 N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP--~~l~--~sL~~L~Ls~N~Lt~LP~~l----p-~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 251 NRITELPER-LP--SALQSLDLFHNKISCLP--ENLP--EELRYLSVYDNSIRTLPAHL----P-SGITHLNVQSNSLTA 318 (754)
T ss_pred CccCcCChh-Hh--CCCCEEECcCCccCccc--cccC--CCCcEEECCCCccccCcccc----h-hhHHHHHhcCCcccc
Confidence 555544322 11 24555555555555432 2121 24555555555555444321 1 234445555555444
Q ss_pred ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCcc
Q psy3330 212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285 (608)
Q Consensus 212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 285 (608)
++... .++|+.|++++|.++.++. .+ .++|+.|++++|+++.+|. .+ .++|+.|+|++|+++.+
T Consensus 319 LP~~l----~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 319 LPETL----PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNL 382 (754)
T ss_pred CCccc----cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCC
Confidence 32211 1244444455544444321 11 1344444555444444442 11 13444444444444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=1.1e-16 Score=162.62 Aligned_cols=280 Identities=24% Similarity=0.255 Sum_probs=146.5
Q ss_pred EEEeeCCCCcc-cCcccccccccccEEEccCCCCCCC----ChhhhcCCCcCcEeeccCCcCCcc------ChhhhCCCC
Q psy3330 78 SLDLSVNKINV-LGSHNFEYQNKLLNLNISYNEISAL----SKDTFKGLKELKTLDLSYNKISVI------NKTAFRDTL 146 (608)
Q Consensus 78 ~L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~ 146 (608)
.|+|..+.++. -....|..+.+|++|+++++.++.. .+..+...+++++|+++++.+... .+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35666666652 2223455566677777777776432 122344556677777776665521 123444555
Q ss_pred CCcEEEccCCCCCccCchhhhcCCCC---ccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccC-C
Q psy3330 147 HLELLILSFNNITYFEDSEIFSSLKS---LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL-T 222 (608)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l-~ 222 (608)
+|+.|++++|.+.... +..+..+.+ |++|++++|++....... ....+.. + +
T Consensus 82 ~L~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~----------------------l~~~l~~-~~~ 137 (319)
T cd00116 82 GLQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRL----------------------LAKGLKD-LPP 137 (319)
T ss_pred ceeEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHH----------------------HHHHHHh-CCC
Confidence 6666666666655332 333333333 555555555443211000 0011122 3 5
Q ss_pred CccEEEccCCCCCcc----CcccccCCCccCEEeccCCcCCCCC----hhhhhCCCCCCEEeccCCCCCccChhh----h
Q psy3330 223 NLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNNNLSAIP----TKQLSKLSALVNLDLSGNNFSNIDSVA----F 290 (608)
Q Consensus 223 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----f 290 (608)
+|+.|++++|.++.. ....+..+++|++|++++|.+++.. ...+..+++|+.|++++|.+++..... +
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 566666666665521 1223455566777777777766311 123445567777777777766443322 2
Q ss_pred CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370 (608)
Q Consensus 291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l 370 (608)
..+++| ++|++++|.+++.....+..
T Consensus 218 ~~~~~L---------------------------------------------~~L~ls~n~l~~~~~~~l~~--------- 243 (319)
T cd00116 218 ASLKSL---------------------------------------------EVLNLGDNNLTDAGAAALAS--------- 243 (319)
T ss_pred cccCCC---------------------------------------------CEEecCCCcCchHHHHHHHH---------
Confidence 233333 44555666655422221110
Q ss_pred ccCCCCCcCChhhhcCCcccceeecccCcccc-----ccCcccCCCCCCCCEEEcCCCcccccCCC-----CCCC-CCCC
Q psy3330 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLK-----QLPSKLFQGNTNLKSVSLKGNSLSHLEAS-----HFPL-ERIS 439 (608)
Q Consensus 371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~-----~lp~~~f~~l~~L~~L~L~~N~l~~l~~~-----~~~l-~~L~ 439 (608)
......+.|+.|++++|. ++ .+... +..+++|+.+++++|.++.-+.. .... +.|+
T Consensus 244 -----------~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 244 -----------ALLSPNISLLTLSLSCND-ITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred -----------HHhccCCCceEEEccCCC-CCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 001123677778888776 43 22222 44568899999999988844322 2223 6789
Q ss_pred EEEccCCcc
Q psy3330 440 FLDLSDNPL 448 (608)
Q Consensus 440 ~L~L~~N~~ 448 (608)
++++.+|||
T Consensus 311 ~~~~~~~~~ 319 (319)
T cd00116 311 SLWVKDDSF 319 (319)
T ss_pred hcccCCCCC
Confidence 999999987
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=7.5e-16 Score=156.40 Aligned_cols=249 Identities=22% Similarity=0.235 Sum_probs=172.9
Q ss_pred ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCccc------CcccccccccccEEEccCCCCCCCChhhhc
Q psy3330 51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINVL------GSHNFEYQNKLLNLNISYNEISALSKDTFK 119 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i------~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~ 119 (608)
..+++|+++++.++. ++..+...+++++|+++++.+... ....+..+++|+.|++++|.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 348899999998853 455667788899999998877631 123566788999999999988765555565
Q ss_pred CCCc---CcEeeccCCcCCcc----ChhhhCCC-CCCcEEEccCCCCCccC---chhhhcCCCCccEEEccCCCCCCCCc
Q psy3330 120 GLKE---LKTLDLSYNKISVI----NKTAFRDT-LHLELLILSFNNITYFE---DSEIFSSLKSLRILKLDNNQILDVPN 188 (608)
Q Consensus 120 ~l~~---L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~ 188 (608)
.+.+ |++|++++|.++.. ....+..+ ++|+.|++++|.++... ....+..+.+|++|++++|.+.+...
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 5555 99999999988732 22345566 88999999999988422 13456777889999999998874211
Q ss_pred ----ccccCCCCCCceEEEccCCCCccccC----CCccccCCCccEEEccCCCCCccCccccc-----CCCccCEEeccC
Q psy3330 189 ----NVLSNLPHQSLHYLYLNENLIETVLD----NSFPFTLTNLHTLALSSNIISFINESSFV-----TLRTLHSLDLSN 255 (608)
Q Consensus 189 ----~~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~ 255 (608)
..+... ++|+.|++++|.+++... ..+.. +++|+.|++++|.++......+. ..+.|++|++++
T Consensus 183 ~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 183 RALAEGLKAN--CNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHhC--CCCCEEeccCCccChHHHHHHHHHhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 122233 469999999998875432 23333 67899999999988753222221 247899999999
Q ss_pred CcCCCCC----hhhhhCCCCCCEEeccCCCCCccChh----hhCCC-CCCceeecc
Q psy3330 256 NNLSAIP----TKQLSKLSALVNLDLSGNNFSNIDSV----AFKSL-FSLKLVKIN 302 (608)
Q Consensus 256 n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~~----~f~~l-~~L~~L~l~ 302 (608)
|.++... ...+..+++|+.+++++|.++..... ++... +.|+.+++.
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 9887321 13456678899999999999865433 23333 567777664
No 21
>KOG0617|consensus
Probab=99.57 E-value=3.9e-17 Score=139.44 Aligned_cols=160 Identities=26% Similarity=0.377 Sum_probs=86.0
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 151 (608)
++++++.|.||+|+++.+|+ .++.+.+|+.|++++|+|+.+|+ .+..++.|+.|++.-|++..+ |..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~l-prgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence 34444555555555555554 24455555555555555555543 345555555555555555433 4455555555555
Q ss_pred EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccC
Q psy3330 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231 (608)
Q Consensus 152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 231 (608)
||..|++.+-..|+.|..+..|+.|.+++|.+.-+|++ ++.+ ++|+.|.+..|.+-..+ ...+. +..|+.|.+++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~l--t~lqil~lrdndll~lp-keig~-lt~lrelhiqg 182 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKL--TNLQILSLRDNDLLSLP-KEIGD-LTRLRELHIQG 182 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhh--cceeEEeeccCchhhCc-HHHHH-HHHHHHHhccc
Confidence 55555555443355555555555555555555555443 3444 34555555555554443 23333 66777777777
Q ss_pred CCCCccCc
Q psy3330 232 NIISFINE 239 (608)
Q Consensus 232 n~l~~~~~ 239 (608)
|+++.++|
T Consensus 183 nrl~vlpp 190 (264)
T KOG0617|consen 183 NRLTVLPP 190 (264)
T ss_pred ceeeecCh
Confidence 77776654
No 22
>KOG0617|consensus
Probab=99.55 E-value=9.3e-17 Score=137.17 Aligned_cols=158 Identities=27% Similarity=0.428 Sum_probs=103.9
Q ss_pred ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175 (608)
Q Consensus 96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 175 (608)
++..++.|.||+|+++.++|+ +..+.+|+.|++++|+|+.+ |..++.+++|+.|+++-|++... |..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~l--prgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNIL--PRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcC--ccccCCCchhhh
Confidence 345666677777777777664 66677777777777777766 34556677777777777776665 466777777777
Q ss_pred EEccCCCCCC--CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330 176 LKLDNNQILD--VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253 (608)
Q Consensus 176 L~L~~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 253 (608)
||+.+|++.+ +|.. |..+ +.|+.|+++.|.++-+++ ..+. +++|+.|.+.+|.+-.+ |..++.++.|++|++
T Consensus 107 ldltynnl~e~~lpgn-ff~m--~tlralyl~dndfe~lp~-dvg~-lt~lqil~lrdndll~l-pkeig~lt~lrelhi 180 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGN-FFYM--TTLRALYLGDNDFEILPP-DVGK-LTNLQILSLRDNDLLSL-PKEIGDLTRLRELHI 180 (264)
T ss_pred hhccccccccccCCcc-hhHH--HHHHHHHhcCCCcccCCh-hhhh-hcceeEEeeccCchhhC-cHHHHHHHHHHHHhc
Confidence 7777776653 3332 3333 446677777777765543 3333 67777777777776655 455666777777777
Q ss_pred cCCcCCCCCh
Q psy3330 254 SNNNLSAIPT 263 (608)
Q Consensus 254 s~n~l~~l~~ 263 (608)
.+|+++.+||
T Consensus 181 qgnrl~vlpp 190 (264)
T KOG0617|consen 181 QGNRLTVLPP 190 (264)
T ss_pred ccceeeecCh
Confidence 7777777775
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=2e-12 Score=116.07 Aligned_cols=123 Identities=33% Similarity=0.378 Sum_probs=35.7
Q ss_pred cccEEEeccCCCcccccccc-cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 52 EVQTIILRENRISNVHYTLS-FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~~~~-~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
++++|+|++|.|+.+.. ++ .+.+|+.|++++|.|+.++ .+..++.|++|++++|.|+.+.......+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 45666666666665542 22 3555666666666666554 24555666666666666665543222345566666666
Q ss_pred CCcCCccCh-hhhCCCCCCcEEEccCCCCCccCc--hhhhcCCCCccEEE
Q psy3330 131 YNKISVINK-TAFRDTLHLELLILSFNNITYFED--SEIFSSLKSLRILK 177 (608)
Q Consensus 131 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~ 177 (608)
+|+|..+.. ..+..+++|+.|++.+|++..... ...+..+|+|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666554433 344455666666666665544321 12344455555554
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=4.9e-12 Score=113.51 Aligned_cols=122 Identities=35% Similarity=0.464 Sum_probs=44.4
Q ss_pred cCCCcccccccccCCCccEEEeeCCCCcccCccccc-ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC
Q psy3330 60 ENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE-YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138 (608)
Q Consensus 60 ~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 138 (608)
.+.|..++. +.+..+++.|+|++|.|+.|.. ++ .+.+|+.|+|++|.|+.+. .+..++.|+.|++++|+|+.+.
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-C
T ss_pred ccccccccc-cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccc
Confidence 334444432 3456678999999999998864 33 5788999999999999886 3788899999999999999886
Q ss_pred hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186 (608)
Q Consensus 139 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 186 (608)
+.....+++|+.|++++|+|..+..-..+..+++|++|++.+|.+...
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 543346788999999999988876556677888888888888877644
No 25
>KOG1259|consensus
Probab=99.21 E-value=1.6e-12 Score=121.19 Aligned_cols=135 Identities=30% Similarity=0.321 Sum_probs=80.7
Q ss_pred cccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330 70 LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE 149 (608)
Q Consensus 70 ~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 149 (608)
+..+..|+.+|||+|.|+.++. +..-.|+++.|++|+|.|..+.. +..+++|+.||||+|.++.+..- =..+.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-HhhhcCEe
Confidence 4445566666666666666654 34556666666666666666543 55666666666666666655321 12455666
Q ss_pred EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc-ccccCCCCCCceEEEccCCCCcccc
Q psy3330 150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIETVL 213 (608)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~~ 213 (608)
.|.|++|.+..+. .++.+.+|..||+++|++..+.. ..++.+|. |+.+.|.+|.+.+++
T Consensus 356 tL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC--LE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC--LETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhhhh---hhHhhhhheeccccccchhhHHHhcccccccH--HHHHhhcCCCccccc
Confidence 6666666666543 35566666666666666655432 23455543 666666666666554
No 26
>KOG3207|consensus
Probab=99.19 E-value=3.4e-12 Score=125.06 Aligned_cols=210 Identities=25% Similarity=0.266 Sum_probs=88.2
Q ss_pred cCCCccEEEeeCCCCcccCc-ccccccccccEEEccCCCCCCCCh--hhhcCCCcCcEeeccCCcCCccChh-hhCCCCC
Q psy3330 72 FYIELRSLDLSVNKINVLGS-HNFEYQNKLLNLNISYNEISALSK--DTFKGLKELKTLDLSYNKISVINKT-AFRDTLH 147 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~ 147 (608)
++.+|+.+.|.+..+...+. .....+++++.|||++|-+....+ .....+++|+.|+|+.|++...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555554443332 233345555555555554443211 1233455555555555554432221 1113445
Q ss_pred CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL 227 (608)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 227 (608)
|+.|.|+.|.++.-.........++|+.|++..|....+......-+ ..|+.|+|++|.+........-..++.|+.|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hHHhhccccCCcccccccccccccccchhhh
Confidence 55555555555433222333444555555555553222211111111 3355555555554443322222224445555
Q ss_pred EccCCCCCccCcccc------cCCCccCEEeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCC
Q psy3330 228 ALSSNIISFINESSF------VTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFS 283 (608)
Q Consensus 228 ~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~ 283 (608)
+++.+.+..+....- ...++|++|++..|++...+. ..+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 555555444322111 233445555555555443321 12333344444444444444
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=3.9e-11 Score=131.39 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=71.8
Q ss_pred eecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEE
Q psy3330 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419 (608)
Q Consensus 340 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~ 419 (608)
.++.|+|++|.+++..+..+..+++|+.|+++. +.+....+..+..+++|+.|+|++|++.+.+|.. ++.+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence 367889999988887777777777777777666 5565555556666666666666666644556654 56666666666
Q ss_pred cCCCccc-ccCCCCCC-CCCCCEEEccCCccccc
Q psy3330 420 LKGNSLS-HLEASHFP-LERISFLDLSDNPLHCD 451 (608)
Q Consensus 420 L~~N~l~-~l~~~~~~-l~~L~~L~L~~N~~~Cd 451 (608)
|++|+++ .+|..+.. ...+..+++++|+..|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 6666666 55554432 23445666666666664
No 28
>KOG3207|consensus
Probab=99.14 E-value=8.8e-12 Score=122.23 Aligned_cols=220 Identities=25% Similarity=0.276 Sum_probs=155.2
Q ss_pred EEeeCCCCcccCcccc----cccccccEEEccCCCCCCCCh-hhhcCCCcCcEeeccCCcCCccCh--hhhCCCCCCcEE
Q psy3330 79 LDLSVNKINVLGSHNF----EYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYNKISVINK--TAFRDTLHLELL 151 (608)
Q Consensus 79 L~Ls~n~l~~i~~~~f----~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L 151 (608)
+.+++-.++.+.-+.+ +++.+|+.+.|.+..+...+. +....+++++.||||+|-+..+.+ .....+++|+.|
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL 177 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence 3444444444433322 357899999999988876553 356789999999999999887644 345689999999
Q ss_pred EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc-ccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV-LSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230 (608)
Q Consensus 152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 230 (608)
+++.|++........-..+++|+.|.++.|+++.-.-.. .... ++++.|+|+.|....+....... ++.|+.|+|+
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f--Psl~~L~L~~N~~~~~~~~~~~i-~~~L~~LdLs 254 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF--PSLEVLYLEANEIILIKATSTKI-LQTLQELDLS 254 (505)
T ss_pred ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC--CcHHHhhhhcccccceecchhhh-hhHHhhcccc
Confidence 999999876543333446789999999999987322211 2223 67999999999644443334444 7789999999
Q ss_pred CCCCCccCc-ccccCCCccCEEeccCCcCCCCChhh------hhCCCCCCEEeccCCCCCccCh-hhhCCCCCCceeec
Q psy3330 231 SNIISFINE-SSFVTLRTLHSLDLSNNNLSAIPTKQ------LSKLSALVNLDLSGNNFSNIDS-VAFKSLFSLKLVKI 301 (608)
Q Consensus 231 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~------~~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~l 301 (608)
+|.+-..+. ...+.++.|+.|+++.+.++++.... ...+++|++|+++.|++..... ..+..+++|+.|.+
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 998876542 34567889999999999998754222 3567899999999999976543 22344555665554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.3e-10 Score=121.56 Aligned_cols=200 Identities=37% Similarity=0.483 Sum_probs=151.0
Q ss_pred EEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCC-cCcEeeccCCcCCccChhhhCCCCCCcEEEccCC
Q psy3330 78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK-ELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156 (608)
Q Consensus 78 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 156 (608)
.+++..+.+..-.. ....++.++.|++.+|.++.+++. ...+. +|+.|++++|.+..++ ..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 57777777632222 234457888999999999988753 34443 8999999999888773 45678889999999999
Q ss_pred CCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCc
Q psy3330 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236 (608)
Q Consensus 157 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 236 (608)
++..++ ...+.+++|+.|++++|++..++... ... ..++++.+++|.+...+ ..+.. +.++..+.+.+|++..
T Consensus 174 ~l~~l~--~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~--~~L~~l~~~~N~~~~~~-~~~~~-~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 174 DLSDLP--KLLSNLSNLNNLDLSGNKISDLPPEI-ELL--SALEELDLSNNSIIELL-SSLSN-LKNLSGLELSNNKLED 246 (394)
T ss_pred hhhhhh--hhhhhhhhhhheeccCCccccCchhh-hhh--hhhhhhhhcCCcceecc-hhhhh-cccccccccCCceeee
Confidence 998874 33447788999999999999888742 111 44888999998543332 23333 7778888888888876
Q ss_pred cCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290 (608)
Q Consensus 237 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f 290 (608)
. +..+..+++++.|++++|.++.++. +..+.+++.|++++|.+..+.+...
T Consensus 247 ~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 247 L-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred c-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 4 4567788899999999999999985 8889999999999999988877544
No 30
>KOG1909|consensus
Probab=99.10 E-value=2.6e-11 Score=115.83 Aligned_cols=229 Identities=19% Similarity=0.216 Sum_probs=129.6
Q ss_pred ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCC----cccCc------ccccccccccEEEccCCCCCCCCh
Q psy3330 51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKI----NVLGS------HNFEYQNKLLNLNISYNEISALSK 115 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l----~~i~~------~~f~~l~~L~~L~Ls~n~i~~~~~ 115 (608)
..+++++|++|.+.. +.+.+...++|+..++++--. ..+++ .++..+++|++|+||+|.+..-.+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 578999999999874 445677788899988876421 12332 245567899999999998774333
Q ss_pred h----hhcCCCcCcEeeccCCcCCccChhhh-------------CCCCCCcEEEccCCCCCccCc---hhhhcCCCCccE
Q psy3330 116 D----TFKGLKELKTLDLSYNKISVINKTAF-------------RDTLHLELLILSFNNITYFED---SEIFSSLKSLRI 175 (608)
Q Consensus 116 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~ 175 (608)
. .+.++..|++|.|.+|.+.......+ +.-++|+++..++|++...+. ...|...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 2 34567889999999998875544332 234566667766666654431 234555566666
Q ss_pred EEccCCCCCCCC----cccccCCCCCCceEEEccCCCCccccC----CCccccCCCccEEEccCCCCCccCcccc-----
Q psy3330 176 LKLDNNQILDVP----NNVLSNLPHQSLHYLYLNENLIETVLD----NSFPFTLTNLHTLALSSNIISFINESSF----- 242 (608)
Q Consensus 176 L~L~~n~l~~~~----~~~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 242 (608)
+.+..|++..-. ...+..+ +.|+.|||..|.++.... ..++. +++|+.|++++|.++.-...+|
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~--~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHC--PHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred EEEecccccCchhHHHHHHHHhC--CcceeeecccchhhhHHHHHHHHHhcc-cchheeecccccccccccHHHHHHHHh
Confidence 666666554211 1123333 335666666655543221 22333 4455555555555543222111
Q ss_pred cCCCccCEEeccCCcCCC----CChhhhhCCCCCCEEeccCCCC
Q psy3330 243 VTLRTLHSLDLSNNNLSA----IPTKQLSKLSALVNLDLSGNNF 282 (608)
Q Consensus 243 ~~l~~L~~L~Ls~n~l~~----l~~~~~~~l~~L~~L~Ls~N~l 282 (608)
.+.++|++|.+.+|.++. ....+....+.|..|+|++|.+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 234455555555555543 1112233345555555555555
No 31
>KOG0532|consensus
Probab=99.09 E-value=4.6e-12 Score=127.92 Aligned_cols=175 Identities=30% Similarity=0.366 Sum_probs=86.7
Q ss_pred ccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC
Q psy3330 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155 (608)
Q Consensus 76 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 155 (608)
-...||+.|++..+|. .+..+..|+.+.|.+|.+..++. ++.++..|.+|+|+.|+++.++. .+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~-~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPD-GLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccccCch-HHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCCh-hhhcCc-ceeEEEec
Confidence 3445555555555554 23444455555555555555542 45555555555555555555433 222332 55555555
Q ss_pred CCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCC
Q psy3330 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235 (608)
Q Consensus 156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 235 (608)
|+++.++ ..++.+.+|..|+.+.|.+..+++.. ..+ .+++.|.+..|++..++++.. . + .|..|+++.|++.
T Consensus 153 Nkl~~lp--~~ig~~~tl~~ld~s~nei~slpsql-~~l--~slr~l~vrRn~l~~lp~El~-~-L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 153 NKLTSLP--EEIGLLPTLAHLDVSKNEIQSLPSQL-GYL--TSLRDLNVRRNHLEDLPEELC-S-L-PLIRLDFSCNKIS 224 (722)
T ss_pred CccccCC--cccccchhHHHhhhhhhhhhhchHHh-hhH--HHHHHHHHhhhhhhhCCHHHh-C-C-ceeeeecccCcee
Confidence 5555542 33445555555555555555555432 222 335555555555554443332 1 2 2445555555555
Q ss_pred ccCcccccCCCccCEEeccCCcCCCCCh
Q psy3330 236 FINESSFVTLRTLHSLDLSNNNLSAIPT 263 (608)
Q Consensus 236 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 263 (608)
.+ |-.|..++.|++|.|.+|.|++-|.
T Consensus 225 ~i-Pv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 225 YL-PVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ec-chhhhhhhhheeeeeccCCCCCChH
Confidence 44 3445555555555555555555443
No 32
>KOG0532|consensus
Probab=99.09 E-value=3.8e-12 Score=128.48 Aligned_cols=189 Identities=26% Similarity=0.268 Sum_probs=158.3
Q ss_pred ecCCCCccccCccC----ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCC
Q psy3330 37 CTDAGLEVVPIQLN----PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112 (608)
Q Consensus 37 C~~~~l~~ip~~~~----~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~ 112 (608)
-++..+...|..-. ......|++.|++..+|..+..+..|+.+.|..|.+..|++ .+.++..|++|+|+.|+++.
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~ 135 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSH 135 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhc
Confidence 34445555554332 35677899999999999988888899999999999999887 78899999999999999999
Q ss_pred CChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccccc
Q psy3330 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192 (608)
Q Consensus 113 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 192 (608)
++... ..| -|+.|.+++|+++.++. .++.+.+|..||.+.|.+..+ +..++++.+|+.|.+..|++..+|+...
T Consensus 136 lp~~l-C~l-pLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~sl--psql~~l~slr~l~vrRn~l~~lp~El~- 209 (722)
T KOG0532|consen 136 LPDGL-CDL-PLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSL--PSQLGYLTSLRDLNVRRNHLEDLPEELC- 209 (722)
T ss_pred CChhh-hcC-cceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhc--hHHhhhHHHHHHHHHhhhhhhhCCHHHh-
Confidence 98754 333 58999999999998854 556889999999999999998 4668899999999999999999998754
Q ss_pred CCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCcc
Q psy3330 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFI 237 (608)
Q Consensus 193 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 237 (608)
.++ |..||++.|++..++ ..|.. ++.|++|.|.+|.++.-
T Consensus 210 ~Lp---Li~lDfScNkis~iP-v~fr~-m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 210 SLP---LIRLDFSCNKISYLP-VDFRK-MRHLQVLQLENNPLQSP 249 (722)
T ss_pred CCc---eeeeecccCceeecc-hhhhh-hhhheeeeeccCCCCCC
Confidence 555 999999999999874 56776 99999999999999864
No 33
>KOG0531|consensus
Probab=99.06 E-value=2.1e-11 Score=127.67 Aligned_cols=197 Identities=35% Similarity=0.412 Sum_probs=90.3
Q ss_pred CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 152 (608)
+..++.+.+..|.+..+.. .+..+.+|+.|++.+|.|..+.. .+..+++|++|++++|.|+.+.+ +..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 3444444455555544221 23444555555555555555442 13445555555555555555422 33344455555
Q ss_pred ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232 (608)
Q Consensus 153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 232 (608)
+.+|.+..+. .+..+..|+.+++++|++..+.......+ .+++.+++.+|.+..+..... +..+..+++..|
T Consensus 147 l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~~~~~--~~l~~l~l~~n~i~~i~~~~~---~~~l~~~~l~~n 218 (414)
T KOG0531|consen 147 LSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDELSEL--ISLEELDLGGNSIREIEGLDL---LKKLVLLSLLDN 218 (414)
T ss_pred eccCcchhcc---CCccchhhhcccCCcchhhhhhhhhhhhc--cchHHHhccCCchhcccchHH---HHHHHHhhcccc
Confidence 5555555543 23445555555555555555444101122 335555555555544322111 223333345555
Q ss_pred CCCccCcccccCCCc--cCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCc
Q psy3330 233 IISFINESSFVTLRT--LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 233 ~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 284 (608)
.++.+.+ +..+.. |+.+++++|++..++ ..+..+..+..|++.+|++..
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccc
Confidence 5444322 111122 455555555555543 234444555555555555444
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.4e-10 Score=85.55 Aligned_cols=60 Identities=37% Similarity=0.571 Sum_probs=36.7
Q ss_pred CccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcC
Q psy3330 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134 (608)
Q Consensus 75 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 134 (608)
+|++|++++|+++.++++.|.++++|++|++++|.++.+++++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666666666666666666666666666666666666666666666666543
No 35
>KOG1259|consensus
Probab=99.03 E-value=4.8e-11 Score=111.45 Aligned_cols=209 Identities=25% Similarity=0.266 Sum_probs=129.4
Q ss_pred cccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc-CCccChhhhCC
Q psy3330 66 VHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK-ISVINKTAFRD 144 (608)
Q Consensus 66 l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 144 (608)
+|..+.-+.+|+.+.++.+.-..|-. .-..-|.|+++...+..++..+. +.....+....-+.-. .++.......-
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPS--LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccccccc--ccchhhhcCccCCCCCccCCceEEecch
Confidence 34455667788888888875443322 11234678888887766554431 2112222222111111 11111111222
Q ss_pred CCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCc
Q psy3330 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNL 224 (608)
Q Consensus 145 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 224 (608)
...|+++||++|.|+.+. ....-.++++.|++++|++..+.. +..+ .+|+.|||++|.++.+...-. .+.++
T Consensus 283 Wq~LtelDLS~N~I~~iD--ESvKL~Pkir~L~lS~N~i~~v~n--La~L--~~L~~LDLS~N~Ls~~~Gwh~--KLGNI 354 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID--ESVKLAPKLRRLILSQNRIRTVQN--LAEL--PQLQLLDLSGNLLAECVGWHL--KLGNI 354 (490)
T ss_pred Hhhhhhccccccchhhhh--hhhhhccceeEEeccccceeeehh--hhhc--ccceEeecccchhHhhhhhHh--hhcCE
Confidence 345778888888887774 456667788888888888877655 4455 458888888887776643222 26778
Q ss_pred cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCCccCh
Q psy3330 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDS 287 (608)
Q Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 287 (608)
++|.+++|.+..+ ..+..+-+|..||+++|++..+.. ..++++|-|+.+.|.+|++.++..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888888887654 335566678888888888876532 357778888888888888887765
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=2.3e-10 Score=119.60 Aligned_cols=200 Identities=35% Similarity=0.406 Sum_probs=153.3
Q ss_pred EEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccc-cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330 55 TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQN-KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133 (608)
Q Consensus 55 ~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 133 (608)
.+++..+.+..-...+...+.++.|++.+|.++.+++. ..... +|+.|++++|.+..++ ..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence 46666676644444455668899999999999999873 44453 8999999999999885 347889999999999999
Q ss_pred CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL 213 (608)
Q Consensus 134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 213 (608)
+..+++. ...+++|+.|++++|++..++ ........|++|.+++|.+...+.. +..+ ..+..+.+.+|++...
T Consensus 175 l~~l~~~-~~~~~~L~~L~ls~N~i~~l~--~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~--~~l~~l~l~~n~~~~~- 247 (394)
T COG4886 175 LSDLPKL-LSNLSNLNNLDLSGNKISDLP--PEIELLSALEELDLSNNSIIELLSS-LSNL--KNLSGLELSNNKLEDL- 247 (394)
T ss_pred hhhhhhh-hhhhhhhhheeccCCccccCc--hhhhhhhhhhhhhhcCCcceecchh-hhhc--ccccccccCCceeeec-
Confidence 9988553 236788999999999999985 3345566799999999964444332 3444 4577778888887764
Q ss_pred CCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhh
Q psy3330 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL 266 (608)
Q Consensus 214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 266 (608)
+..... +++++.|++++|.++.+.. +..+.+++.|++++|.+..+++...
T Consensus 248 ~~~~~~-l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGN-LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhcc-ccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 234444 7889999999999998865 8889999999999999998876443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=3.5e-10 Score=83.51 Aligned_cols=61 Identities=38% Similarity=0.549 Sum_probs=48.3
Q ss_pred ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCC
Q psy3330 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 158 (608)
++|++|++++|+++.+++++|.++++|++|++++|+++.+++.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888888877788888888888888888888777888888888888877764
No 38
>KOG1909|consensus
Probab=98.93 E-value=3.7e-10 Score=108.12 Aligned_cols=233 Identities=19% Similarity=0.170 Sum_probs=169.4
Q ss_pred ccccCCCccEEEeeCCCCccc----CcccccccccccEEEccCCCCC----CCCh------hhhcCCCcCcEeeccCCcC
Q psy3330 69 TLSFYIELRSLDLSVNKINVL----GSHNFEYQNKLLNLNISYNEIS----ALSK------DTFKGLKELKTLDLSYNKI 134 (608)
Q Consensus 69 ~~~~~~~L~~L~Ls~n~l~~i----~~~~f~~l~~L~~L~Ls~n~i~----~~~~------~~~~~l~~L~~L~Ls~n~l 134 (608)
.+.....++.++|++|.+..- ....+.+.++|+..++++--.. .+++ .++.+++.|++|+||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345677899999999998742 2235667789999999864222 2221 3556778999999999998
Q ss_pred CccChh----hhCCCCCCcEEEccCCCCCccCchhh-------------hcCCCCccEEEccCCCCCCCCcc----cccC
Q psy3330 135 SVINKT----AFRDTLHLELLILSFNNITYFEDSEI-------------FSSLKSLRILKLDNNQILDVPNN----VLSN 193 (608)
Q Consensus 135 ~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 193 (608)
..-... -+..+..|++|+|.+|.+.... ... .+.-++|+++..++|++..-+.. .|..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a-g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEA-GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhH-HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 754443 3456889999999999886543 222 34567899999999999876654 3444
Q ss_pred CCCCCceEEEccCCCCcccc----CCCccccCCCccEEEccCCCCCcc----CcccccCCCccCEEeccCCcCCCCChhh
Q psy3330 194 LPHQSLHYLYLNENLIETVL----DNSFPFTLTNLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 194 l~~~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 265 (608)
. +.++.+.++.|.|..-. ...|.. +++|+.|+|.+|.++.. ...++..+++|++|++++|.++.--..+
T Consensus 184 ~--~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 184 H--PTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred c--cccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 4 56999999999886432 234565 89999999999998742 2345677889999999999998633222
Q ss_pred -----hhCCCCCCEEeccCCCCCccC----hhhhCCCCCCceeeccCCC
Q psy3330 266 -----LSKLSALVNLDLSGNNFSNID----SVAFKSLFSLKLVKINLIP 305 (608)
Q Consensus 266 -----~~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~l~~~~ 305 (608)
-...|+|+.|.+.+|.++.-. ..+....+.|+.|+++++.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 234789999999999998432 2334567899999997543
No 39
>KOG0531|consensus
Probab=98.90 E-value=2.5e-10 Score=119.64 Aligned_cols=238 Identities=32% Similarity=0.351 Sum_probs=179.9
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
..+..+.++.|.+..+...+..+.+|+.|++.+|+|..+... +..+++|++|++++|.|+.+.. +..++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhheec
Confidence 457777888999988666788899999999999999988752 6789999999999999999874 6778889999999
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCCCCccCch-hhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDS-EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI 209 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l 209 (608)
+|.|+.+. .+..++.|+.+++++|.+..+. + . ...+.+++.+.+.+|.+..+...... ..+..+++..|.+
T Consensus 149 ~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie-~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 149 GNLISDIS--GLESLKSLKLLDLSYNRIVDIE-NDE-LSELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDNKI 220 (414)
T ss_pred cCcchhcc--CCccchhhhcccCCcchhhhhh-hhh-hhhccchHHHhccCCchhcccchHHH----HHHHHhhcccccc
Confidence 99999874 4556899999999999999886 3 2 57788999999999998877653322 3355668888888
Q ss_pred ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh--
Q psy3330 210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS-- 287 (608)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 287 (608)
+.+.+..... ..+|+.+++++|.+.... ..+..+..+..|++.+|++..+. .+...+.+..+....|++.....
T Consensus 221 ~~~~~l~~~~-~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 221 SKLEGLNELV-MLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred eeccCcccch-hHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhh
Confidence 8765433211 113899999999988653 45667788999999999988875 35666777888888887663321
Q ss_pred -hh-hCCCCCCceeeccC
Q psy3330 288 -VA-FKSLFSLKLVKINL 303 (608)
Q Consensus 288 -~~-f~~l~~L~~L~l~~ 303 (608)
.. -...+.++...+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~ 314 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLEL 314 (414)
T ss_pred cccccccccccccccccc
Confidence 11 23445555555543
No 40
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.77 E-value=4.2e-09 Score=125.06 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=69.5
Q ss_pred EcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhh
Q psy3330 419 SLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDR 497 (608)
Q Consensus 419 ~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (608)
||++|+|+.||++.| .+++|+.|+|++|||.|||.+.||..|++.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v------------------------------- 49 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGV------------------------------- 49 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCc-------------------------------
Confidence 689999999999888 588999999999999999999999999984310
Q ss_pred hhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCcc
Q psy3330 498 IIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNT 539 (608)
Q Consensus 498 ~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~~ 539 (608)
.........|.+|+.++|+++.+++..++.|....
T Consensus 50 -------~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C~~~y 84 (2740)
T TIGR00864 50 -------KVRQPEAALCAGPGALAGQPLLGIPLLDSGCDEEY 84 (2740)
T ss_pred -------cccCCcccCCCCChHHCCCCcccCCcccCCCCCcc
Confidence 01122467899999999999999999888897654
No 41
>KOG4658|consensus
Probab=98.76 E-value=9.4e-09 Score=115.23 Aligned_cols=139 Identities=27% Similarity=0.280 Sum_probs=106.1
Q ss_pred CCCccccCcc-CccccEEEeccCCCcccccccccCCCccEEEeeCCC--CcccCcccccccccccEEEccCCC-CCCCCh
Q psy3330 40 AGLEVVPIQL-NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNK--INVLGSHNFEYQNKLLNLNISYNE-ISALSK 115 (608)
Q Consensus 40 ~~l~~ip~~~-~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~--l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~ 115 (608)
.++..+|... +..++.+.+.+|.+..++.+. .+++|++|-+..|. +..++...|..++.|++|||++|. +..+|
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP- 588 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP- 588 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-
Confidence 4555566443 357888999988888776543 34478888888886 788888888899999999999775 44554
Q ss_pred hhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCC
Q psy3330 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182 (608)
Q Consensus 116 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 182 (608)
..++++-+||+|++++..++.+ |..++++..|.+|++..+...... ++....+.+||+|.+....
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHhhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 5788899999999999988877 567788888999999887655554 6677778888888886544
No 42
>KOG4658|consensus
Probab=98.74 E-value=1.3e-08 Score=114.24 Aligned_cols=130 Identities=28% Similarity=0.318 Sum_probs=98.8
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCCC--CCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE--ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE 149 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 149 (608)
+....+...+-+|.+..++.. ...++|++|-+..|. +..++.+.|..++.|+.|||++|.=-+-.|..++.+.+|+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 346678888888888776653 234579899998886 7778877788899999999998754444477888899999
Q ss_pred EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCC
Q psy3330 150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207 (608)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n 207 (608)
+|+++++.+..+ |..++++.+|.+|++..+.-...++.....+ .+|++|.+...
T Consensus 599 yL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s 652 (889)
T KOG4658|consen 599 YLDLSDTGISHL--PSGLGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRS 652 (889)
T ss_pred cccccCCCcccc--chHHHHHHhhheeccccccccccccchhhhc--ccccEEEeecc
Confidence 999999998877 5778899999999998876555555555555 55777777654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=4.7e-08 Score=107.33 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=80.9
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 178 (608)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++.. |..++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence 3677888888887766677888888888888888888777777888888888888888888766 677888888888888
Q ss_pred cCCCCCCCCcccccCCCCCCceEEEccCCC
Q psy3330 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENL 208 (608)
Q Consensus 179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~ 208 (608)
++|++.+..+..+.... ..+..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~-~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRL-LHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhcc-ccCceEEecCCc
Confidence 88888755554444332 335677777764
No 44
>KOG1859|consensus
Probab=98.44 E-value=3.4e-09 Score=110.30 Aligned_cols=129 Identities=29% Similarity=0.352 Sum_probs=90.2
Q ss_pred cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330 52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 131 (608)
.+...+++.|.+..+..++.-++.|+.|+|++|+++... .+..+++|++|||++|.+..++.-...++. |+.|.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 456667777777777777777777888888888777765 567777888888888877777654444444 77788888
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD 185 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 185 (608)
|.++.+ ..+.++.+|+.||++.|-+.+...-..+..+..|+.|.|.+|.+..
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 777765 4456777777788887776665433345556677777777776643
No 45
>KOG1644|consensus
Probab=98.43 E-value=3.1e-07 Score=81.70 Aligned_cols=106 Identities=25% Similarity=0.249 Sum_probs=48.1
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
=+.++|++.++..+..--.-..+...+||++|.+..++ .|..++.|.+|.|.+|+|+.|.+..-.-+++|+.|.|.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 34455555554443321111223344555555554433 2444555555555555555555443333444555555555
Q ss_pred cCCccCh-hhhCCCCCCcEEEccCCCCCc
Q psy3330 133 KISVINK-TAFRDTLHLELLILSFNNITY 160 (608)
Q Consensus 133 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 160 (608)
.|..+.. ..+..+++|++|.+-+|..+.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhc
Confidence 5444322 233344455555555544443
No 46
>KOG1859|consensus
Probab=98.40 E-value=2.8e-09 Score=110.94 Aligned_cols=102 Identities=29% Similarity=0.393 Sum_probs=51.0
Q ss_pred ccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC
Q psy3330 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155 (608)
Q Consensus 76 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 155 (608)
|...+.++|.+..++. ++.-++.|+.|+|++|+++... .+..++.|++|||++|.+..++.....++. |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3444444444444333 3444555555555555555443 355555555555555555555433333332 55555555
Q ss_pred CCCCccCchhhhcCCCCccEEEccCCCCC
Q psy3330 156 NNITYFEDSEIFSSLKSLRILKLDNNQIL 184 (608)
Q Consensus 156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 184 (608)
|.++.+. .+.++.+|+.||+++|-+.
T Consensus 242 N~l~tL~---gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 242 NALTTLR---GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cHHHhhh---hHHhhhhhhccchhHhhhh
Confidence 5555442 2445555555555555443
No 47
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.33 E-value=1.3e-06 Score=75.48 Aligned_cols=118 Identities=21% Similarity=0.382 Sum_probs=55.0
Q ss_pred ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCC
Q psy3330 69 TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL 148 (608)
Q Consensus 69 ~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 148 (608)
.|.++.+|+.+.+.. .++.|+..+|.++++|+.+++.++ +..+...+|.++++|+.+.+.+ .+..+....|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455566666666653 566666666666666666666553 6666666666666666666654 5555555666666666
Q ss_pred cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccC
Q psy3330 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSN 193 (608)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 193 (608)
+.+++..+ +..+. ...|.+. +|+.+.+.. .+..++..+|.+
T Consensus 84 ~~i~~~~~-~~~i~-~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~ 124 (129)
T PF13306_consen 84 KNIDIPSN-ITEIG-SSSFSNC-NLKEINIPS-NITKIEENAFKN 124 (129)
T ss_dssp CEEEETTT--BEEH-TTTTTT--T--EEE-TT-B-SS----GGG-
T ss_pred cccccCcc-ccEEc-hhhhcCC-CceEEEECC-CccEECCccccc
Confidence 66666554 44444 4555555 666665554 344444444443
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.29 E-value=1.6e-06 Score=74.94 Aligned_cols=101 Identities=21% Similarity=0.406 Sum_probs=54.5
Q ss_pred ccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhh
Q psy3330 88 VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167 (608)
Q Consensus 88 ~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 167 (608)
.|+..+|.++.+|+.+.+.. .+..+...+|.++.+|+.+.+..+ +..+...+|.++++|+.+.+.. .+..+. ...|
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~-~~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG-DNAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc-cccc
Confidence 45666777777777777764 566777777777777777777664 6777667777776777777754 444444 4556
Q ss_pred cCCCCccEEEccCCCCCCCCcccccC
Q psy3330 168 SSLKSLRILKLDNNQILDVPNNVLSN 193 (608)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~~~~~~~ 193 (608)
..+++|+.+.+..+ +..++...|.+
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT
T ss_pred cccccccccccCcc-ccEEchhhhcC
Confidence 66666666666543 44444444433
No 49
>KOG1644|consensus
Probab=98.24 E-value=1.9e-06 Score=76.85 Aligned_cols=108 Identities=27% Similarity=0.271 Sum_probs=85.2
Q ss_pred ccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC
Q psy3330 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155 (608)
Q Consensus 76 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 155 (608)
=+.++|.+.++..+..- =.-..+...+||++|.+..+. .|..++.|..|.|++|+|+.+.+.--.-+++|+.|.|.+
T Consensus 21 e~e~~LR~lkip~ienl-g~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENL-GATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhc-cccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 46778888777666541 112456788999999988775 488899999999999999999887666778899999999
Q ss_pred CCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDV 186 (608)
Q Consensus 156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 186 (608)
|.+..+.+-..+..+++|++|.+-+|.++.-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcc
Confidence 9998876556677888889888888876644
No 50
>KOG4579|consensus
Probab=98.22 E-value=1.5e-07 Score=78.29 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=81.2
Q ss_pred cccEEEeccCCCccccc---ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEee
Q psy3330 52 EVQTIILRENRISNVHY---TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~---~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 128 (608)
.+..++|+.+.+-.++. .+....+|+..+|++|.+...|+..-...+.++.|+|++|.|+.+|.. +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence 45567777777776664 345566777788888888888876666677888888888888888765 88888888888
Q ss_pred ccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162 (608)
Q Consensus 129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 162 (608)
++.|.+... +..+..+.++-.|+..+|.+..++
T Consensus 107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence 888887765 344445777888888888777765
No 51
>KOG2982|consensus
Probab=98.21 E-value=9.9e-07 Score=83.05 Aligned_cols=204 Identities=20% Similarity=0.252 Sum_probs=105.3
Q ss_pred cccccEEEccCCCCCCCC--hhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330 97 QNKLLNLNISYNEISALS--KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 174 (608)
.+.++.|||..|.|+.-. ...+.+++.|+.|+|+.|.+...+...-..+.+|+.|-|.+..+...........++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 445666666666655321 123455666666666666655432211124456666666666554433234455666666
Q ss_pred EEEccCCCCCCCC--cccccCCCCCCceEEEccCCCCccccC-CCccccCCCccEEEccCCCCCcc-CcccccCCCccCE
Q psy3330 175 ILKLDNNQILDVP--NNVLSNLPHQSLHYLYLNENLIETVLD-NSFPFTLTNLHTLALSSNIISFI-NESSFVTLRTLHS 250 (608)
Q Consensus 175 ~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 250 (608)
+|.++.|.+..+- ........ +.+.++....|....-.. .....-++++..+-+..|.+... ....+..++.+..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWS-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccccc-hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666666443221 11111111 234444444432211000 00011145677777777766543 2344556667777
Q ss_pred EeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCCccCh----h--hhCCCCCCceeec
Q psy3330 251 LDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDS----V--AFKSLFSLKLVKI 301 (608)
Q Consensus 251 L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~----~--~f~~l~~L~~L~l 301 (608)
|+|+.|++.+... +.+.+++.|..|.+++|++..--. . -++.+++++.|+=
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 8888888876321 457778888888888887653221 1 1355666666544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1.7e-06 Score=80.41 Aligned_cols=220 Identities=19% Similarity=0.178 Sum_probs=111.8
Q ss_pred ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCcc----cC------cccccccccccEEEccCCCCCCCCh
Q psy3330 51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINV----LG------SHNFEYQNKLLNLNISYNEISALSK 115 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~----i~------~~~f~~l~~L~~L~Ls~n~i~~~~~ 115 (608)
..++.++||+|.|.+ +...+.+-.+|+..++++-.... ++ ..++.++|.|+..+||+|.+..-.+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567888888888874 33456666777777776542221 11 1245567777778887777663322
Q ss_pred ----hhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330 116 ----DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191 (608)
Q Consensus 116 ----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 191 (608)
+.+..-..|.+|.+++|.+..+....++. .|.. |..| .-..+-+.|+++....|++...+....
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n--------KKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN--------KKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH--------hhhccCCCceEEEeccchhccCcHHHH
Confidence 23445566777777777766554433321 0000 0000 011223455555555555544332211
Q ss_pred cCC--CCCCceEEEccCCCCcccc-----CCCccccCCCccEEEccCCCCCccCc----ccccCCCccCEEeccCCcCCC
Q psy3330 192 SNL--PHQSLHYLYLNENLIETVL-----DNSFPFTLTNLHTLALSSNIISFINE----SSFVTLRTLHSLDLSNNNLSA 260 (608)
Q Consensus 192 ~~l--~~~~L~~L~L~~n~l~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~ 260 (608)
... .+..++.+.+..|.|.... ...... +.+|+.|++++|.++.... .++...+.|+.|.+.+|.++.
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 100 0023555555555543210 011122 5677777777777653222 233444556777777776654
Q ss_pred CChhh-h-----hCCCCCCEEeccCCCCC
Q psy3330 261 IPTKQ-L-----SKLSALVNLDLSGNNFS 283 (608)
Q Consensus 261 l~~~~-~-----~~l~~L~~L~Ls~N~l~ 283 (608)
--..+ + ...|+|..|...+|.+.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 22211 1 12456677777776654
No 53
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=98.10 E-value=1.2e-06 Score=61.81 Aligned_cols=51 Identities=27% Similarity=0.599 Sum_probs=38.8
Q ss_pred CccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcc
Q psy3330 446 NPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEV 525 (608)
Q Consensus 446 N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~ 525 (608)
|||.|||.+.||..|++.+ ........+.|.+|++++ .++
T Consensus 1 NP~~CdC~l~~~~~w~~~~---------------------------------------~~~~~~~~~~C~~P~~~~-~~l 40 (51)
T smart00082 1 NPFICDCELRWLLRWLQAN---------------------------------------EHLQDPVSLRCASPSSLR-GPL 40 (51)
T ss_pred CCccCcCCchHHHHHHHhC---------------------------------------CccCCCCCCEeCCcHHHH-hHH
Confidence 8999999999999999731 001122478999999998 568
Q ss_pred cccCCCccccC
Q psy3330 526 KAVPENSVHCE 536 (608)
Q Consensus 526 ~~~~~~~~~C~ 536 (608)
.++..+++.|.
T Consensus 41 ~~~~~~~~~C~ 51 (51)
T smart00082 41 LELLHSEFKCP 51 (51)
T ss_pred HcCCHhhCCCc
Confidence 88887777774
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=2.9e-06 Score=57.26 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=29.3
Q ss_pred cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCC
Q psy3330 388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430 (608)
Q Consensus 388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~ 430 (608)
++|++|++++|+ ++++|+. ++++++|+.|++++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCC-CcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 357778888886 7778775 6778888888888888776653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.8e-06 Score=55.76 Aligned_cols=38 Identities=39% Similarity=0.466 Sum_probs=18.0
Q ss_pred CccEEEeeCCCCcccCcccccccccccEEEccCCCCCCC
Q psy3330 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113 (608)
Q Consensus 75 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~ 113 (608)
+|++|++++|+|+++++ .++++++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555443 344555555555555555443
No 56
>KOG2120|consensus
Probab=97.98 E-value=2.6e-07 Score=86.86 Aligned_cols=175 Identities=22% Similarity=0.105 Sum_probs=87.2
Q ss_pred CcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCC-CCCCCCcc-cccCCCCCCce
Q psy3330 124 LKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN-QILDVPNN-VLSNLPHQSLH 200 (608)
Q Consensus 124 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~~~L~ 200 (608)
|++||||+..|+.-. ...+..+.+|+.|.+.++++..-. ...+++-.+|+.|+++.+ ++++.... .+..+ +.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc--s~L~ 263 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC--SRLD 263 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccccceeeccccccccchhHHHHHHHhh--hhHh
Confidence 555555555444211 123344555555555555554433 334444455555555543 22221111 12223 3455
Q ss_pred EEEccCCCCccccCC-CccccCCCccEEEccCCCC--Cc-cCcccccCCCccCEEeccCC-cCCCCChhhhhCCCCCCEE
Q psy3330 201 YLYLNENLIETVLDN-SFPFTLTNLHTLALSSNII--SF-INESSFVTLRTLHSLDLSNN-NLSAIPTKQLSKLSALVNL 275 (608)
Q Consensus 201 ~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l--~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~l~~L~~L 275 (608)
.|+++.+.+....-. ....--.+|+.|++++..- .. -...--..+++|..|||++| .++.-....|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 555555544321111 1111123455666665431 10 00111245778888888876 3444334567778888888
Q ss_pred eccCCCCCccChhh---hCCCCCCceeeccC
Q psy3330 276 DLSGNNFSNIDSVA---FKSLFSLKLVKINL 303 (608)
Q Consensus 276 ~Ls~N~l~~~~~~~---f~~l~~L~~L~l~~ 303 (608)
.++.+. +++|.. +...++|.+|+..+
T Consensus 344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 344 SLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 887765 455544 46677888888754
No 57
>KOG2982|consensus
Probab=97.97 E-value=8e-06 Score=77.08 Aligned_cols=210 Identities=21% Similarity=0.195 Sum_probs=135.2
Q ss_pred ccccEEEccCCCCCCCChh-hhc-CCCcCcEeeccCCcCCccCh--hhhCCCCCCcEEEccCCCCCccCchhhh-cCCCC
Q psy3330 98 NKLLNLNISYNEISALSKD-TFK-GLKELKTLDLSYNKISVINK--TAFRDTLHLELLILSFNNITYFEDSEIF-SSLKS 172 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~-~~~-~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~ 172 (608)
..++.|-+.++.|...... .|+ ..+.++.+||.+|.|+.... ..+.++|.|++|+++.|.+.... +.. ..+.+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~n 122 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKN 122 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccc
Confidence 3555666666666654432 233 35779999999999987543 45678999999999999987754 223 46789
Q ss_pred ccEEEccCCCCCCCCc-ccccCCCCCCceEEEccCCCCccc--cCCCccccCCCccEEEccCCCCCccCc--ccccCCCc
Q psy3330 173 LRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIETV--LDNSFPFTLTNLHTLALSSNIISFINE--SSFVTLRT 247 (608)
Q Consensus 173 L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~ 247 (608)
|++|-|.+..+.--.. ..+..+ +.++.|.++.|.+..+ ........-+.++++.+-.|....... .--.-.++
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~l--P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDL--PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcc--hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 9999998887652221 223345 4478888888854322 122222212355566655554321000 00012467
Q ss_pred cCEEeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCCccCh-hhhCCCCCCceeeccCCCCCCCCC
Q psy3330 248 LHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDS-VAFKSLFSLKLVKINLIPNLDSID 311 (608)
Q Consensus 248 L~~L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~l~~~~~l~~~~ 311 (608)
+..+-+..|.+++... ..+..+|.+..|+|+.|+|..... +++.++++|..|.+..+|-++...
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 7888888888876432 356677888899999999887544 457888999999998777665543
No 58
>KOG4579|consensus
Probab=97.97 E-value=8.5e-07 Score=73.93 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=87.0
Q ss_pred eecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEE
Q psy3330 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419 (608)
Q Consensus 340 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~ 419 (608)
.+...++++|.+...++..-...+.++++++.. +.+..++.. |..++.|+.|+++.|. +...|.- +..+.++.+||
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~-l~~~p~v-i~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNP-LNAEPRV-IAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCc-cccchHH-HHHHHhHHHhc
Confidence 456789999999999887766777888888877 778777766 8888889999998887 6666665 44488888888
Q ss_pred cCCCcccccCCCCCCCCCCCEEEccCCccccccCCh
Q psy3330 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLL 455 (608)
Q Consensus 420 L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~ 455 (608)
..+|.+..||..++--+..-..+++++||...|+.+
T Consensus 130 s~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 130 SPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred CCCCccccCcHHHhccccHHHHHhcCCcccccCccc
Confidence 888888888887664334445667889999888753
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00027 Score=71.73 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=17.4
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccC
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~ 107 (608)
.+.+++.|++++|.++.+|. -..+|++|.+++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsn 81 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV----LPNELTEITIEN 81 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccC
Confidence 35556666666666655541 123466666654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00027 Score=71.80 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=78.1
Q ss_pred ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC-cCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCc
Q psy3330 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSL 173 (608)
Q Consensus 96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L 173 (608)
.+.+++.|++++|.++.+| .+ ..+|++|.++++ .++.+ +..+ ..+|++|++++| .+..++ .+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~sLP--------~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISGLP--------ESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCcccccccc--------ccc
Confidence 4577778888887777775 12 235888888763 34443 2333 246788888777 444432 346
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc-cc-cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEE
Q psy3330 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE-TV-LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251 (608)
Q Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 251 (608)
+.|++..+....+ ..+| .+|+.|.+.++... .. .+..+ .++|+.|.+++|..... |..+ ..+|+.|
T Consensus 115 e~L~L~~n~~~~L-----~~LP-ssLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i~L-P~~L--P~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSI-----KNVP-NGLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNIIL-PEKL--PESLQSI 182 (426)
T ss_pred ceEEeCCCCCccc-----ccCc-chHhheecccccccccccccccc---CCcccEEEecCCCcccC-cccc--cccCcEE
Confidence 6677766554332 2344 56777777543211 11 01112 25788888887775533 2223 3578888
Q ss_pred eccCCcCC
Q psy3330 252 DLSNNNLS 259 (608)
Q Consensus 252 ~Ls~n~l~ 259 (608)
+++.+...
T Consensus 183 ~ls~n~~~ 190 (426)
T PRK15386 183 TLHIEQKT 190 (426)
T ss_pred Eecccccc
Confidence 88776433
No 61
>KOG2120|consensus
Probab=97.66 E-value=1.4e-06 Score=81.99 Aligned_cols=86 Identities=21% Similarity=0.115 Sum_probs=43.1
Q ss_pred CceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC-cCCCCC-hhhhhCCCCCCEE
Q psy3330 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN-NLSAIP-TKQLSKLSALVNL 275 (608)
Q Consensus 198 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~~l~~L~~L 275 (608)
.+++|||++..|+.-.-..+-..+++|+.|.+.++++..-....++.-.+|+.|+|+.+ .+++-. .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35666666555543211111112556666666666665544445555556666666653 233211 1134556666666
Q ss_pred eccCCCCC
Q psy3330 276 DLSGNNFS 283 (608)
Q Consensus 276 ~Ls~N~l~ 283 (608)
+|+++.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66665544
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.54 E-value=7.8e-05 Score=69.66 Aligned_cols=200 Identities=22% Similarity=0.169 Sum_probs=97.9
Q ss_pred cccCCCccEEEeeCCCCcccCcc----cccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCC
Q psy3330 70 LSFYIELRSLDLSVNKINVLGSH----NFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT 145 (608)
Q Consensus 70 ~~~~~~L~~L~Ls~n~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 145 (608)
+..+..++.++||+|.|.+-... .+++-.+|+..++++--....-..... +|+ ....++-++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~---~L~-----------~Ll~aLlkc 91 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYS---NLV-----------MLLKALLKC 91 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHH---HHH-----------HHHHHHhcC
Confidence 34466777888888877653322 334455666666664322111100000 000 001233445
Q ss_pred CCCcEEEccCCCCCccCc---hhhhcCCCCccEEEccCCCCCCCCccccc-------------CCCCCCceEEEccCCCC
Q psy3330 146 LHLELLILSFNNITYFED---SEIFSSLKSLRILKLDNNQILDVPNNVLS-------------NLPHQSLHYLYLNENLI 209 (608)
Q Consensus 146 ~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------~l~~~~L~~L~L~~n~l 209 (608)
++|+..+|+.|.+..-.+ .+.+++-..|.+|.+++|++..+...-++ .- +.|+......|++
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k--p~Le~vicgrNRl 169 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK--PKLEVVICGRNRL 169 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC--CCceEEEeccchh
Confidence 555555555555433220 12344455566666666655443322111 11 4477777777777
Q ss_pred ccccCC----CccccCCCccEEEccCCCCCcc--Ccc---cccCCCccCEEeccCCcCCCCC----hhhhhCCCCCCEEe
Q psy3330 210 ETVLDN----SFPFTLTNLHTLALSSNIISFI--NES---SFVTLRTLHSLDLSNNNLSAIP----TKQLSKLSALVNLD 276 (608)
Q Consensus 210 ~~~~~~----~~~~~l~~L~~L~L~~n~l~~~--~~~---~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~ 276 (608)
..-... .+.. -..|+.+.+..|.|..- ..- .+..+.+|+.|||.+|-++..- ..++..-+.|+.|.
T Consensus 170 engs~~~~a~~l~s-h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 ENGSKELSAALLES-HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ccCcHHHHHHHHHh-hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 543321 1222 23577777777766521 111 1123456777777777665422 12334445566777
Q ss_pred ccCCCCCccC
Q psy3330 277 LSGNNFSNID 286 (608)
Q Consensus 277 Ls~N~l~~~~ 286 (608)
+.+|-++.-.
T Consensus 249 lnDClls~~G 258 (388)
T COG5238 249 LNDCLLSNEG 258 (388)
T ss_pred ccchhhcccc
Confidence 7766665443
No 63
>KOG3665|consensus
Probab=97.39 E-value=0.00012 Score=80.59 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=57.5
Q ss_pred CCccEEEeeCCCCc-c-cCcccccccccccEEEccCCCCCCCC-hhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330 74 IELRSLDLSVNKIN-V-LGSHNFEYQNKLLNLNISYNEISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL 150 (608)
Q Consensus 74 ~~L~~L~Ls~n~l~-~-i~~~~f~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 150 (608)
.+|++||+++...- . -+...-.-+|.|++|.+++-.+..-. ...+.++++|..||+|+.+++.+ ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664321 1 11112233666666666654433211 12345566666777776666655 44566666666
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 183 (608)
|.+.+=.+....+-..+.+|++|++||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 666665555432233455666666666665543
No 64
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=97.38 E-value=0.00019 Score=44.93 Aligned_cols=32 Identities=34% Similarity=0.904 Sum_probs=28.1
Q ss_pred CCCCCceecCCceEEEecCCCCccccCccCcccc
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQ 54 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~ 54 (608)
.||..|.|. ...|+|++.+++++|.++|.+.+
T Consensus 1 ~CP~~C~C~--~~~V~C~~~~L~~vP~~iP~~t~ 32 (33)
T smart00013 1 ACPAPCNCS--GTAVDCSGRGLTEVPLDLPPDTT 32 (33)
T ss_pred CcCCCCEEC--CCEeEeCCCCcCccCCCCCcccc
Confidence 499999997 46899999999999999987654
No 65
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=97.30 E-value=0.00016 Score=43.15 Aligned_cols=28 Identities=39% Similarity=0.917 Sum_probs=22.3
Q ss_pred CCCCCceecCCceEEEecCCCCccccCccC
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLN 50 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~ 50 (608)
.||..|.|. ...|+|++.+++++|.++|
T Consensus 1 ~CP~~C~C~--~~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCS--GLTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEE--TTEEEETTSS-SSS-STS-
T ss_pred CcCCCCEec--CCEeECCCCCCCccCCCCc
Confidence 599999998 4689999999999998775
No 66
>KOG3665|consensus
Probab=97.29 E-value=0.00023 Score=78.34 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=93.7
Q ss_pred ccccEEEeccCCCc--cccccc-ccCCCccEEEeeCCCCcccC-cccccccccccEEEccCCCCCCCChhhhcCCCcCcE
Q psy3330 51 PEVQTIILRENRIS--NVHYTL-SFYIELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126 (608)
Q Consensus 51 ~~l~~L~L~~n~i~--~l~~~~-~~~~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 126 (608)
.+++.|++++...- .-+..+ ..+|.|++|.+++-.+..-. .....++++|..||+|+.+++.+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57889999886543 233333 46899999999987664322 23456899999999999999988 45889999999
Q ss_pred eeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCc-----hhhhcCCCCccEEEccCCCCC
Q psy3330 127 LDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFED-----SEIFSSLKSLRILKLDNNQIL 184 (608)
Q Consensus 127 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~ 184 (608)
|.+.+=.+..-. -..+-+|++|+.||+|......... -+.-..+++||.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998886666422 2456689999999999876544320 011234778888888876554
No 67
>KOG2739|consensus
Probab=97.19 E-value=0.00015 Score=67.81 Aligned_cols=107 Identities=29% Similarity=0.326 Sum_probs=62.9
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCC--CCC-CCChhhhcCCCcCcEeeccCCcCCccCh-hhhCCCCC
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN--EIS-ALSKDTFKGLKELKTLDLSYNKISVINK-TAFRDTLH 147 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 147 (608)
.+..|+.|++.+..++++. .|-.+++|+.|.++.| ++. +++. ....+++|++|++++|+|..+.. .....+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecc--cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3445566666666665543 3556778888888887 443 2222 23345778888888887764322 33455666
Q ss_pred CcEEEccCCCCCccCc--hhhhcCCCCccEEEccCC
Q psy3330 148 LELLILSFNNITYFED--SEIFSSLKSLRILKLDNN 181 (608)
Q Consensus 148 L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n 181 (608)
|..|++.+|....... ...|.-+++|++|+-...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 7777777776555432 234556666666654443
No 68
>KOG2123|consensus
Probab=97.19 E-value=3e-05 Score=72.64 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=73.6
Q ss_pred CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccCh-hhhCCCCCCcEE
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK-TAFRDTLHLELL 151 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 151 (608)
+.+.+.|+.-++.+.+|.. ...++.|++|.||-|.|+.+.+ |..+++|++|+|..|.|..+.. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 5566778888888887753 4577888888888888888864 7788888888888888887755 456788888888
Q ss_pred EccCCCCCccCch----hhhcCCCCccEEE
Q psy3330 152 ILSFNNITYFEDS----EIFSSLKSLRILK 177 (608)
Q Consensus 152 ~L~~n~l~~~~~~----~~~~~l~~L~~L~ 177 (608)
-|..|.-.+-..+ ..+.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888876554311 2345566776664
No 69
>KOG2123|consensus
Probab=96.68 E-value=9.9e-05 Score=69.25 Aligned_cols=84 Identities=30% Similarity=0.325 Sum_probs=70.8
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 176 (608)
+.+.+.|+..++.+..|. ....++.|+.|.||-|+|+.+. .|..+++|++|+|..|.|..+..-..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 557788999999999885 4678999999999999999884 477899999999999999988655667889999999
Q ss_pred EccCCCCC
Q psy3330 177 KLDNNQIL 184 (608)
Q Consensus 177 ~L~~n~l~ 184 (608)
-|..|.-.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 98887644
No 70
>KOG4341|consensus
Probab=96.58 E-value=7.9e-05 Score=73.84 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=28.1
Q ss_pred CCCccCEEeccCCc-CCCCChhhh-hCCCCCCEEeccCCCCCccCh--hhhCCCCCCceeeccC
Q psy3330 244 TLRTLHSLDLSNNN-LSAIPTKQL-SKLSALVNLDLSGNNFSNIDS--VAFKSLFSLKLVKINL 303 (608)
Q Consensus 244 ~l~~L~~L~Ls~n~-l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~--~~f~~l~~L~~L~l~~ 303 (608)
+..+|+.|-++.++ ++..-...+ .+++.|+.+++.+........ ..-.+++.|+.+.+++
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence 44566666666554 232221112 345566666666654332110 1113456666666643
No 71
>KOG4341|consensus
Probab=96.13 E-value=0.00029 Score=69.95 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=34.1
Q ss_pred cCCCccCEEeccCCc-CCCCChh-hhhCCCCCCEEeccCCC-CCccChhhh-CCCCCCceeec
Q psy3330 243 VTLRTLHSLDLSNNN-LSAIPTK-QLSKLSALVNLDLSGNN-FSNIDSVAF-KSLFSLKLVKI 301 (608)
Q Consensus 243 ~~l~~L~~L~Ls~n~-l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~f-~~l~~L~~L~l 301 (608)
.++..|+.|+.+++. ++..+-. .-.++++|+.|.++.++ ++......+ .+++.|+.+++
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 356778888887753 3332222 23457889999998876 333322222 34556666555
No 72
>KOG2739|consensus
Probab=96.02 E-value=0.0041 Score=58.43 Aligned_cols=86 Identities=27% Similarity=0.247 Sum_probs=48.3
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc--CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK--ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 174 (608)
+..|+.|.+.+..++.+. .|..+++|+.|.++.|. +..--.-....+++|+++++++|++..+..-.....+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445566666666655553 36667777777777773 32111112233477777777777766543223345555666
Q ss_pred EEEccCCCCC
Q psy3330 175 ILKLDNNQIL 184 (608)
Q Consensus 175 ~L~L~~n~l~ 184 (608)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666665443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.007 Score=33.83 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=11.2
Q ss_pred CCCEEEcCCCcccccCCC
Q psy3330 414 NLKSVSLKGNSLSHLEAS 431 (608)
Q Consensus 414 ~L~~L~L~~N~l~~l~~~ 431 (608)
+|++|||++|+|+.||++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 356666666666666655
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.40 E-value=0.009 Score=30.97 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=8.6
Q ss_pred CCCCEEEcCCCcccccC
Q psy3330 413 TNLKSVSLKGNSLSHLE 429 (608)
Q Consensus 413 ~~L~~L~L~~N~l~~l~ 429 (608)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35677777777766654
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0078 Score=33.65 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=7.7
Q ss_pred ccEEEeeCCCCcccCc
Q psy3330 76 LRSLDLSVNKINVLGS 91 (608)
Q Consensus 76 L~~L~Ls~n~l~~i~~ 91 (608)
|++|||++|+++.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4445555554444444
No 76
>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.
Probab=94.97 E-value=0.0072 Score=35.00 Aligned_cols=24 Identities=29% Similarity=0.942 Sum_probs=18.2
Q ss_pred cccCCCCcccCCcccccCCCccccC
Q psy3330 512 LKCSSPPDIKGLEVKAVPENSVHCE 536 (608)
Q Consensus 512 ~~C~~p~~~~g~~~~~~~~~~~~C~ 536 (608)
.+|++|+.++| ++.++..+++.|.
T Consensus 2 ~~Ca~P~~lrg-~l~~~~~~~f~C~ 25 (25)
T PF01463_consen 2 ARCASPPELRG-PLLDLPPSDFKCS 25 (25)
T ss_dssp -BEEESGGGTT-BGGGSSGGG----
T ss_pred CccCCChHHcC-cHhhCCcccCcCC
Confidence 47999999999 9999999888884
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.86 E-value=0.018 Score=33.73 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=16.7
Q ss_pred CCCCCEEEcCCCcccccCCCCCC
Q psy3330 412 NTNLKSVSLKGNSLSHLEASHFP 434 (608)
Q Consensus 412 l~~L~~L~L~~N~l~~l~~~~~~ 434 (608)
+++|+.|+|++|+|+.||++.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677888888888888776653
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.86 E-value=0.018 Score=33.73 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=16.7
Q ss_pred CCCCCEEEcCCCcccccCCCCCC
Q psy3330 412 NTNLKSVSLKGNSLSHLEASHFP 434 (608)
Q Consensus 412 l~~L~~L~L~~N~l~~l~~~~~~ 434 (608)
+++|+.|+|++|+|+.||++.|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677888888888888776653
No 79
>KOG1947|consensus
Probab=94.34 E-value=0.012 Score=63.29 Aligned_cols=112 Identities=27% Similarity=0.096 Sum_probs=60.6
Q ss_pred cCCCccEEEeeCC-CCcccC-cccccccccccEEEccCC--CCCCCC---hhhhcCCCcCcEeeccCCc-CCccChhhhC
Q psy3330 72 FYIELRSLDLSVN-KINVLG-SHNFEYQNKLLNLNISYN--EISALS---KDTFKGLKELKTLDLSYNK-ISVINKTAFR 143 (608)
Q Consensus 72 ~~~~L~~L~Ls~n-~l~~i~-~~~f~~l~~L~~L~Ls~n--~i~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 143 (608)
.++.|+.|.+..+ .+.... ......+++|+.|+++++ .+...+ ......+++|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3567777777665 343311 123445677777777752 111111 1123445677777777766 4444333333
Q ss_pred -CCCCCcEEEccCCC-CCccCchhhhcCCCCccEEEccCCCC
Q psy3330 144 -DTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 144 -~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 183 (608)
.+++|+.|.+.++. ++..........++.|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766665 44433234445566777777776543
No 80
>KOG1947|consensus
Probab=93.85 E-value=0.019 Score=61.65 Aligned_cols=233 Identities=21% Similarity=0.111 Sum_probs=125.5
Q ss_pred ccccEEEeccC-CCcc--cccccccCCCccEEEeeCC--CCcccC---cccccccccccEEEccCCC-CCCCChhhhcC-
Q psy3330 51 PEVQTIILREN-RISN--VHYTLSFYIELRSLDLSVN--KINVLG---SHNFEYQNKLLNLNISYNE-ISALSKDTFKG- 120 (608)
Q Consensus 51 ~~l~~L~L~~n-~i~~--l~~~~~~~~~L~~L~Ls~n--~l~~i~---~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~- 120 (608)
+.++.|.+... .+.. +......+++|+.|+++++ .+...+ ......+++|+.|+++.+. ++...-.++..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 56777777765 3443 4455678999999999873 222111 1244567899999999887 66655444443
Q ss_pred CCcCcEeeccCCc-CCccCh-hhhCCCCCCcEEEccCCCCCcc-CchhhhcCCCCccEEEccCCCCCCCCcccccCCCCC
Q psy3330 121 LKELKTLDLSYNK-ISVINK-TAFRDTLHLELLILSFNNITYF-EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197 (608)
Q Consensus 121 l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~ 197 (608)
+++|++|.+.++. ++...- .....+++|+.|+++++..... .......++++|+.|.+....- . .
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c--~ 335 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C--P 335 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C--c
Confidence 7899999988776 554322 2335678899999998765321 1123345577777655433221 1 1
Q ss_pred CceEEEccCCCCc---cccCCCccccCCCccEEEccCCCCCccC-cccccCCCccCEEeccCCcCCCCChhhhhCCCCCC
Q psy3330 198 SLHYLYLNENLIE---TVLDNSFPFTLTNLHTLALSSNIISFIN-ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALV 273 (608)
Q Consensus 198 ~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~ 273 (608)
.++.+.+.+.... ......... +++++.+.+..+...... ...+.+++.|. ..+.. .......++
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~ 404 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRS-CPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLR 404 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhc-CCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccc
Confidence 2333333321110 111122222 677777777776643332 23344555442 11111 111122267
Q ss_pred EEeccCCCCCccChh-hhCC-CCCCceeeccCCCC
Q psy3330 274 NLDLSGNNFSNIDSV-AFKS-LFSLKLVKINLIPN 306 (608)
Q Consensus 274 ~L~Ls~N~l~~~~~~-~f~~-l~~L~~L~l~~~~~ 306 (608)
.|+++.......... .... +..++.+.+.+++.
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 777777664433221 1111 45566666654443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.82 E-value=0.056 Score=31.55 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=11.0
Q ss_pred ccccEEEccCCCCCCCChhhh
Q psy3330 98 NKLLNLNISYNEISALSKDTF 118 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~ 118 (608)
++|++|+|++|+|+.+++++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.82 E-value=0.056 Score=31.55 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=11.0
Q ss_pred ccccEEEccCCCCCCCChhhh
Q psy3330 98 NKLLNLNISYNEISALSKDTF 118 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~ 118 (608)
++|++|+|++|+|+.+++++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.04 E-value=0.064 Score=27.77 Aligned_cols=12 Identities=58% Similarity=0.908 Sum_probs=3.6
Q ss_pred ccEEEeeCCCCc
Q psy3330 76 LRSLDLSVNKIN 87 (608)
Q Consensus 76 L~~L~Ls~n~l~ 87 (608)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 334444444333
No 84
>KOG3864|consensus
Probab=92.50 E-value=0.023 Score=51.38 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.4
Q ss_pred CceecEEecCCCCCCCcChhhhcccccccccccccCCCC
Q psy3330 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 376 (608)
Q Consensus 338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l 376 (608)
...++.+|-++..|..+.-+-+.++++++.+.+..|..+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 345688888888888777777777777777766655443
No 85
>KOG0473|consensus
Probab=92.42 E-value=0.0042 Score=57.09 Aligned_cols=82 Identities=26% Similarity=0.267 Sum_probs=34.8
Q ss_pred CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 152 (608)
..+.+.||++.|++..+.. .|+.+..|..|+++.|.|..++. .++.+..++.+++..|..+.. |.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhC-CccccccCCcchhh
Confidence 3334444444444433332 23334444444444444444432 234444444444444444433 23444444444444
Q ss_pred ccCCC
Q psy3330 153 LSFNN 157 (608)
Q Consensus 153 L~~n~ 157 (608)
+-+|.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 44443
No 86
>KOG0473|consensus
Probab=90.91 E-value=0.005 Score=56.58 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=59.1
Q ss_pred CcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchh
Q psy3330 86 INVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165 (608)
Q Consensus 86 l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 165 (608)
++.||...+......+.||++.|++..+.. -|.-++.|..|+++.|.+..+ |..++....+..+++..|..+.. |.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~--p~ 105 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQ--PK 105 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhC--Cc
Confidence 445555555666677777777777666553 356666777777777776655 34555556666666666666655 45
Q ss_pred hhcCCCCccEEEccCCC
Q psy3330 166 IFSSLKSLRILKLDNNQ 182 (608)
Q Consensus 166 ~~~~l~~L~~L~L~~n~ 182 (608)
.++..+.++.+++..|.
T Consensus 106 s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTE 122 (326)
T ss_pred cccccCCcchhhhccCc
Confidence 66666666666665554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.13 E-value=0.31 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.0
Q ss_pred CCCCEEEcCCCcccccCC
Q psy3330 413 TNLKSVSLKGNSLSHLEA 430 (608)
Q Consensus 413 ~~L~~L~L~~N~l~~l~~ 430 (608)
++|+.|++++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468888999999988886
No 88
>KOG4308|consensus
Probab=87.03 E-value=0.012 Score=62.33 Aligned_cols=39 Identities=33% Similarity=0.439 Sum_probs=20.4
Q ss_pred CccCEEeccCCcCCCCC----hhhhhCCCCCCEEeccCCCCCc
Q psy3330 246 RTLHSLDLSNNNLSAIP----TKQLSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 246 ~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~ 284 (608)
..+++++++.|.++.-- ...+..++.++.+.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44556666666655421 1234445566666666665543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.22 E-value=0.72 Score=26.88 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=13.6
Q ss_pred CCCCCEEEcCCCcccccC
Q psy3330 412 NTNLKSVSLKGNSLSHLE 429 (608)
Q Consensus 412 l~~L~~L~L~~N~l~~l~ 429 (608)
+.+|+.|+|++|+|+.|.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 357888888888887664
No 90
>KOG3864|consensus
Probab=82.47 E-value=0.27 Score=44.70 Aligned_cols=81 Identities=25% Similarity=0.143 Sum_probs=39.5
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCC-ccChhhhC-CCCCCcEEEccCC-CCCccCchhhhcCCCCccE
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS-VINKTAFR-DTLHLELLILSFN-NITYFEDSEIFSSLKSLRI 175 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~ 175 (608)
.++.+|-++..|....-.-+.+++.++.|.+.+++-- ...-.-++ -.++|+.|++++| +|++.. -..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHH
Confidence 3455555555555444444555555555555554311 00001111 2356777777765 344443 445556666666
Q ss_pred EEccC
Q psy3330 176 LKLDN 180 (608)
Q Consensus 176 L~L~~ 180 (608)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65543
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.10 E-value=1.5 Score=24.84 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=5.8
Q ss_pred CCCCEEEcCCCccc
Q psy3330 413 TNLKSVSLKGNSLS 426 (608)
Q Consensus 413 ~~L~~L~L~~N~l~ 426 (608)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555555444
No 92
>KOG4308|consensus
Probab=66.06 E-value=0.23 Score=52.69 Aligned_cols=160 Identities=23% Similarity=0.261 Sum_probs=107.4
Q ss_pred ccccEEEeccCCCccc-----ccccccC-CCccEEEeeCCCCcccCc----ccccccccccEEEccCCCCCCC----Chh
Q psy3330 51 PEVQTIILRENRISNV-----HYTLSFY-IELRSLDLSVNKINVLGS----HNFEYQNKLLNLNISYNEISAL----SKD 116 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l-----~~~~~~~-~~L~~L~Ls~n~l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~----~~~ 116 (608)
+++..|++++|.+... -..+... ..+++|++..|.++.... ..+.....++.++++.|.+... .+.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 5788899999999831 1233333 567888888888875432 2344478899999999987421 122
Q ss_pred hhc----CCCcCcEeeccCCcCCccCh----hhhCCCCC-CcEEEccCCCCCccCc---hhhhcCC-CCccEEEccCCCC
Q psy3330 117 TFK----GLKELKTLDLSYNKISVINK----TAFRDTLH-LELLILSFNNITYFED---SEIFSSL-KSLRILKLDNNQI 183 (608)
Q Consensus 117 ~~~----~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~-L~~L~L~~n~l~~~~~---~~~~~~l-~~L~~L~L~~n~l 183 (608)
++. ...++++|.+++|.++.... ..+...+. +..|++..|.+.+... ...+..+ ..+++++++.|.+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 333 46789999999998874322 34455555 7779999999875421 2234455 6789999999998
Q ss_pred CCCCccc----ccCCCCCCceEEEccCCCCccc
Q psy3330 184 LDVPNNV----LSNLPHQSLHYLYLNENLIETV 212 (608)
Q Consensus 184 ~~~~~~~----~~~l~~~~L~~L~L~~n~l~~~ 212 (608)
+.-.... +... ..++.+.++.|.+...
T Consensus 275 ~~~~~~~L~~~l~~~--~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSC--RQLEELSLSNNPLTDY 305 (478)
T ss_pred cccchHHHHHHHhhh--HHHHHhhcccCccccH
Confidence 7644332 2233 4588999999988653
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.52 E-value=5.3 Score=23.65 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=6.0
Q ss_pred CCCEEEccCCcc
Q psy3330 437 RISFLDLSDNPL 448 (608)
Q Consensus 437 ~L~~L~L~~N~~ 448 (608)
+|++|+|++|++
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344555555555
No 94
>KOG3763|consensus
Probab=62.91 E-value=3.2 Score=43.69 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=42.5
Q ss_pred cccceeecccCccccccCcc--cCCCCCCCCEEEcCCC--cccccCCCC-CCCCCCCEEEccCCcccc
Q psy3330 388 IQLETVIINENMNLKQLPSK--LFQGNTNLKSVSLKGN--SLSHLEASH-FPLERISFLDLSDNPLHC 450 (608)
Q Consensus 388 ~~L~~L~Ls~N~~l~~lp~~--~f~~l~~L~~L~L~~N--~l~~l~~~~-~~l~~L~~L~L~~N~~~C 450 (608)
+.+..+.|++|+ +..+..- .-..-|+|+.|+|++| .+..-++-- .....|++|.+.|||+.=
T Consensus 218 p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 677888899997 6666531 1123589999999999 444333221 234678999999999843
No 95
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=58.37 E-value=7.8 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=13.0
Q ss_pred HHhheeeEee-hhHHHHhHHHhhcCccccccc
Q psy3330 554 GVICILMYFI-YRKRALWKNKINRNLKHQSSY 584 (608)
Q Consensus 554 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 584 (608)
+++++++||+ .|+++.-.--......+...|
T Consensus 43 iiiivli~lcssRKkKaaAAi~eediQfinpy 74 (189)
T PF05568_consen 43 IIIIVLIYLCSSRKKKAAAAIEEEDIQFINPY 74 (189)
T ss_pred HHHHHHHHHHhhhhHHHHhhhhhhcccccCcc
Confidence 3333444444 344443322233344455666
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.65 E-value=5.1 Score=33.56 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=7.7
Q ss_pred HHHhheeeEeehhHHHH
Q psy3330 553 SGVICILMYFIYRKRAL 569 (608)
Q Consensus 553 ~~~~~~~~~~~~~~~~~ 569 (608)
+++++.+.|+.+|++++
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33444555555555554
No 97
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=52.58 E-value=10 Score=32.49 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=6.0
Q ss_pred HHHHhheeeEeehh
Q psy3330 552 SSGVICILMYFIYR 565 (608)
Q Consensus 552 ~~~~~~~~~~~~~~ 565 (608)
++++.++.+.|+|+
T Consensus 21 lLl~cgiGcvwhwk 34 (158)
T PF11770_consen 21 LLLLCGIGCVWHWK 34 (158)
T ss_pred HHHHHhcceEEEee
Confidence 34444444444443
No 98
>KOG3763|consensus
Probab=52.52 E-value=7.3 Score=41.17 Aligned_cols=65 Identities=29% Similarity=0.283 Sum_probs=40.8
Q ss_pred cccCCCccEEEeeCCCCcccCcc--cccccccccEEEccCC--CCCCCChhhhcCC--CcCcEeeccCCcCCc
Q psy3330 70 LSFYIELRSLDLSVNKINVLGSH--NFEYQNKLLNLNISYN--EISALSKDTFKGL--KELKTLDLSYNKISV 136 (608)
Q Consensus 70 ~~~~~~L~~L~Ls~n~l~~i~~~--~f~~l~~L~~L~Ls~n--~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~ 136 (608)
-.+.+.+..++|++|++..+..- .-...|+|+.|+|++| .+... ..+.++ ..|++|-+.+|.+..
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 35677788888888877655321 1234578888888888 33322 123222 357888888887753
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.69 E-value=17 Score=46.31 Aligned_cols=32 Identities=38% Similarity=0.456 Sum_probs=21.9
Q ss_pred EccCCCCCccCcccccCCCccCEEeccCCcCC
Q psy3330 228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259 (608)
Q Consensus 228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 259 (608)
+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35667777777777777777777777777554
No 100
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=43.42 E-value=14 Score=36.43 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=8.5
Q ss_pred HHHHHhheeeEeehhHHH
Q psy3330 551 LSSGVICILMYFIYRKRA 568 (608)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~ 568 (608)
++++++++++|+.+|+||
T Consensus 266 liIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555554444
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.02 E-value=15 Score=21.14 Aligned_cols=12 Identities=8% Similarity=0.028 Sum_probs=6.4
Q ss_pred cccceeecccCc
Q psy3330 388 IQLETVIINENM 399 (608)
Q Consensus 388 ~~L~~L~Ls~N~ 399 (608)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555554
No 102
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=42.63 E-value=24 Score=29.39 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=15.4
Q ss_pred eccccccCCCCcccCCcccccC
Q psy3330 508 VLNNLKCSSPPDIKGLEVKAVP 529 (608)
Q Consensus 508 ~~~~~~C~~p~~~~g~~~~~~~ 529 (608)
+.+...|.-+....|.+-+.+.
T Consensus 63 dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 63 DIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred cCCCceeECCCCccccccccee
Confidence 4456778888888887766555
No 103
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=41.63 E-value=15 Score=36.68 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=7.3
Q ss_pred HHHhheeeEeehhHHH
Q psy3330 553 SGVICILMYFIYRKRA 568 (608)
Q Consensus 553 ~~~~~~~~~~~~~~~~ 568 (608)
++++++++|+..|||.
T Consensus 284 lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 284 LVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHhheeEeccc
Confidence 3333444555554443
No 104
>PTZ00370 STEVOR; Provisional
Probab=41.25 E-value=11 Score=36.31 Aligned_cols=16 Identities=19% Similarity=0.677 Sum_probs=10.3
Q ss_pred eeEeehhHHHHhHHHh
Q psy3330 559 LMYFIYRKRALWKNKI 574 (608)
Q Consensus 559 ~~~~~~~~~~~~~~~~ 574 (608)
-+|+++||+..|+...
T Consensus 275 YiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 275 YIWLYRRRKNSWKHEC 290 (296)
T ss_pred HHHHHHhhcchhHHHH
Confidence 3555667777887643
No 105
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.31 E-value=11 Score=36.16 Aligned_cols=14 Identities=21% Similarity=0.769 Sum_probs=8.5
Q ss_pred eeEeehhHHHHhHH
Q psy3330 559 LMYFIYRKRALWKN 572 (608)
Q Consensus 559 ~~~~~~~~~~~~~~ 572 (608)
-+|+++||+..|+.
T Consensus 279 YiWlyrrRK~swkh 292 (295)
T TIGR01478 279 YIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHhhcccccc
Confidence 34555666777864
No 106
>KOG4242|consensus
Probab=30.84 E-value=1.6e+02 Score=30.95 Aligned_cols=239 Identities=21% Similarity=0.079 Sum_probs=108.7
Q ss_pred CCccccCccCccccEEEeccCCCcc--ccc--ccccCCCccEEEeeCCCCcccCccccc---ccccccEEEccCCCCC--
Q psy3330 41 GLEVVPIQLNPEVQTIILRENRISN--VHY--TLSFYIELRSLDLSVNKINVLGSHNFE---YQNKLLNLNISYNEIS-- 111 (608)
Q Consensus 41 ~l~~ip~~~~~~l~~L~L~~n~i~~--l~~--~~~~~~~L~~L~Ls~n~l~~i~~~~f~---~l~~L~~L~Ls~n~i~-- 111 (608)
...++|+.++...--+.++.+..+. +.. .=..-..+.+++|+.|...+-.+.... .-.-++.++.+...+.
T Consensus 177 i~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD 256 (553)
T KOG4242|consen 177 IGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLD 256 (553)
T ss_pred ccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchh
Confidence 3456666666555556677666552 221 111233577888888876543332221 2234667777665544
Q ss_pred -CCChhhhcCCCcCcEeeccCCcCCc-----c---ChhhhCCCCCCcEEEccCCCCCccCchhhhcCC-CC----ccEEE
Q psy3330 112 -ALSKDTFKGLKELKTLDLSYNKISV-----I---NKTAFRDTLHLELLILSFNNITYFEDSEIFSSL-KS----LRILK 177 (608)
Q Consensus 112 -~~~~~~~~~l~~L~~L~Ls~n~l~~-----~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~----L~~L~ 177 (608)
...+..++..+.+.+.+++.|..+. . ....|..-+++ +|++.......-..+..+-.+ .+ =-.++
T Consensus 257 ~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rld 335 (553)
T KOG4242|consen 257 LLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLD 335 (553)
T ss_pred hcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCC
Confidence 1233344555678888888776442 1 11234444555 555555443221101111100 00 01233
Q ss_pred ccCCCCCCCC--cccccCCCCCCceEEEccCCCCccccCCCc--cccCCCccEEEccCCCCCcc-Ccccc--------cC
Q psy3330 178 LDNNQILDVP--NNVLSNLPHQSLHYLYLNENLIETVLDNSF--PFTLTNLHTLALSSNIISFI-NESSF--------VT 244 (608)
Q Consensus 178 L~~n~l~~~~--~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~-~~~~~--------~~ 244 (608)
+..|....-. ...... ..+++|....|.+.+-..... .. -+..+.+++..-.-..+ .+... ..
T Consensus 336 l~~cp~~~a~vleaci~g---~R~q~l~~rdnnldgeg~~vgk~~~-s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~ 411 (553)
T KOG4242|consen 336 LRRCPLERAEVLEACIFG---QRVQVLLQRDNNLDGEGGAVGKRKQ-SKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRT 411 (553)
T ss_pred hhhccccccchhhccccc---eeeeEeeccccccccccccccceee-ccccccccccccCCceeccccccchhhhhhhcc
Confidence 3333222111 001111 347777777776655432221 11 23444444433221000 00000 01
Q ss_pred CCccCEEeccCCcCCCCChh---hhhCCCCCCEEeccCCCCCc
Q psy3330 245 LRTLHSLDLSNNNLSAIPTK---QLSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 245 l~~L~~L~Ls~n~l~~l~~~---~~~~l~~L~~L~Ls~N~l~~ 284 (608)
..-+..+.++.+.+..-+.. ....-+.+..|++++|....
T Consensus 412 ~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 412 HGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred cccccCcccCCCcccccHHHHHHhhccCcccccccccCCCccc
Confidence 12355666777766543221 23444567788888887654
No 107
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.13 E-value=19 Score=23.40 Aligned_cols=7 Identities=43% Similarity=1.345 Sum_probs=2.6
Q ss_pred eEeehhH
Q psy3330 560 MYFIYRK 566 (608)
Q Consensus 560 ~~~~~~~ 566 (608)
.|++|||
T Consensus 32 l~~~~rR 38 (40)
T PF08693_consen 32 LFFWYRR 38 (40)
T ss_pred hheEEec
Confidence 3333333
No 108
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=28.31 E-value=37 Score=25.75 Aligned_cols=8 Identities=25% Similarity=0.301 Sum_probs=0.0
Q ss_pred CcceEEEE
Q psy3330 593 PTPILMLY 600 (608)
Q Consensus 593 ~~~~~~~~ 600 (608)
.-+++..|
T Consensus 46 ~~~~~ktY 53 (75)
T PF14575_consen 46 KFPGVKTY 53 (75)
T ss_dssp --------
T ss_pred cCCCceee
Confidence 44455544
No 109
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=22.27 E-value=68 Score=25.98 Aligned_cols=26 Identities=12% Similarity=0.406 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHhheeeEeehhH
Q psy3330 541 LYVLSFMLLLLSSGVICILMYFIYRK 566 (608)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (608)
.+++++++++.+++++.++.|+...|
T Consensus 63 iili~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 63 IILISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred chHHHHHHHHHHHHHHhhheEEEEEe
Confidence 34444444444444555555555433
No 110
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=22.18 E-value=26 Score=25.46 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=0.0
Q ss_pred eEeehhH
Q psy3330 560 MYFIYRK 566 (608)
Q Consensus 560 ~~~~~~~ 566 (608)
.++.+|.
T Consensus 30 lf~iyR~ 36 (64)
T PF01034_consen 30 LFLIYRM 36 (64)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3344443
No 111
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.51 E-value=30 Score=22.41 Aligned_cols=13 Identities=15% Similarity=0.662 Sum_probs=5.3
Q ss_pred HHHHhheeeEeeh
Q psy3330 552 SSGVICILMYFIY 564 (608)
Q Consensus 552 ~~~~~~~~~~~~~ 564 (608)
.+.+++..+|..|
T Consensus 21 ~i~iva~~iYRKw 33 (43)
T PF08114_consen 21 GIGIVALFIYRKW 33 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
Done!