Query psy3330
Match_columns 608
No_of_seqs 490 out of 4465
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 22:13:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-53 3.6E-58 487.8 36.1 522 25-598 1-686 (844)
2 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-51 1.5E-55 453.4 36.3 472 21-537 22-627 (635)
3 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-52 1.1E-56 460.1 26.3 463 25-532 6-603 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.2E-50 4.1E-55 447.5 35.7 466 20-530 2-603 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-50 1.6E-54 448.6 30.2 470 25-537 1-674 (680)
6 2id5_A Lingo-1, leucine rich r 100.0 5.7E-48 2E-52 413.3 30.6 379 20-538 1-385 (477)
7 3v47_A TOLL-like receptor 5B a 100.0 2.9E-47 9.8E-52 405.5 33.0 394 19-463 1-423 (455)
8 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-46 9.6E-51 408.2 31.7 406 20-463 22-525 (562)
9 2z63_A TOLL-like receptor 4, v 100.0 1.7E-46 5.8E-51 411.3 29.9 429 25-463 2-546 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-45 4.2E-50 402.5 28.1 422 21-463 3-525 (549)
11 2z7x_B TOLL-like receptor 1, v 100.0 8.6E-45 2.9E-49 393.0 29.4 396 32-463 2-496 (520)
12 3rgz_A Protein brassinosteroid 100.0 4E-42 1.4E-46 388.3 28.9 292 148-453 396-721 (768)
13 3rgz_A Protein brassinosteroid 100.0 2.3E-41 7.8E-46 382.1 26.2 415 33-453 272-744 (768)
14 3zyj_A Leucine-rich repeat-con 100.0 3.5E-40 1.2E-44 348.8 30.3 310 18-538 31-342 (440)
15 3zyi_A Leucine-rich repeat-con 100.0 2.7E-39 9.2E-44 343.2 30.1 309 18-538 42-353 (452)
16 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-39 2.9E-43 364.8 33.2 388 54-450 7-540 (844)
17 4eco_A Uncharacterized protein 100.0 3.7E-39 1.3E-43 355.9 29.1 357 65-450 197-601 (636)
18 3o6n_A APL1; leucine-rich repe 100.0 1.1E-38 3.6E-43 332.2 24.8 335 34-460 27-363 (390)
19 3t6q_A CD180 antigen; protein- 100.0 9.6E-38 3.3E-42 344.3 32.3 388 53-450 14-463 (606)
20 1ziw_A TOLL-like receptor 3; i 100.0 9.6E-38 3.3E-42 349.0 32.3 245 54-303 7-281 (680)
21 4ecn_A Leucine-rich repeat pro 100.0 1.8E-37 6.2E-42 348.3 32.6 359 66-450 440-841 (876)
22 3vq2_A TLR4, TOLL-like recepto 100.0 4.6E-38 1.6E-42 346.8 26.7 386 53-449 13-534 (606)
23 3oja_B Anopheles plasmodium-re 100.0 1.4E-37 4.9E-42 341.3 26.4 334 33-458 32-367 (597)
24 4eco_A Uncharacterized protein 100.0 2.4E-37 8.3E-42 341.4 26.2 383 41-454 194-631 (636)
25 4ecn_A Leucine-rich repeat pro 100.0 7.4E-37 2.5E-41 343.4 27.7 381 41-454 436-871 (876)
26 2z7x_B TOLL-like receptor 1, v 100.0 6E-37 2E-41 331.5 25.8 367 54-450 3-458 (520)
27 2z81_A CD282 antigen, TOLL-lik 100.0 7E-37 2.4E-41 333.3 26.4 369 55-450 9-487 (549)
28 2z80_A TOLL-like receptor 2, v 100.0 1.8E-37 6E-42 318.4 19.0 305 16-463 18-329 (353)
29 1o6v_A Internalin A; bacterial 100.0 4.8E-35 1.6E-39 311.8 33.3 344 51-450 46-389 (466)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-35 5.3E-40 323.3 30.2 363 53-453 33-489 (562)
31 3v47_A TOLL-like receptor 5B a 100.0 6.5E-36 2.2E-40 317.8 26.5 356 54-450 13-385 (455)
32 1xku_A Decorin; proteoglycan, 100.0 6E-35 2E-39 296.7 29.2 260 19-291 22-284 (330)
33 2z63_A TOLL-like receptor 4, v 100.0 1.5E-35 5.3E-40 324.2 25.4 386 53-451 9-509 (570)
34 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-35 2.2E-39 296.7 25.4 261 18-292 23-286 (332)
35 2z66_A Variable lymphocyte rec 100.0 5.1E-35 1.7E-39 293.9 24.1 215 22-288 1-217 (306)
36 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-34 7.6E-39 319.1 27.6 389 54-451 34-557 (635)
37 1o6v_A Internalin A; bacterial 100.0 2E-33 6.8E-38 299.3 29.8 328 71-453 43-370 (466)
38 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-33 7.2E-38 297.0 29.4 332 50-454 41-392 (457)
39 4fmz_A Internalin; leucine ric 100.0 4.4E-33 1.5E-37 285.0 30.6 303 51-449 44-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 5.5E-33 1.9E-37 284.4 28.6 289 70-454 40-329 (347)
41 2id5_A Lingo-1, leucine rich r 100.0 1.7E-33 5.7E-38 301.0 24.5 267 31-301 33-303 (477)
42 3o6n_A APL1; leucine-rich repe 100.0 7.7E-33 2.6E-37 287.9 27.1 330 31-454 46-379 (390)
43 1jl5_A Outer protein YOPM; leu 100.0 7.6E-32 2.6E-36 284.8 30.1 343 32-450 73-430 (454)
44 1ozn_A Reticulon 4 receptor; N 100.0 5.8E-33 2E-37 275.9 19.5 235 21-259 1-238 (285)
45 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-31 3.7E-36 283.8 30.2 311 68-450 36-353 (457)
46 1ozn_A Reticulon 4 receptor; N 100.0 4.5E-32 1.5E-36 269.5 22.4 268 149-535 14-284 (285)
47 2ft3_A Biglycan; proteoglycan, 100.0 1E-31 3.5E-36 273.0 24.6 310 36-424 10-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 3.8E-31 1.3E-35 268.6 27.9 296 51-424 31-330 (330)
49 3oja_B Anopheles plasmodium-re 100.0 9.8E-32 3.4E-36 294.9 22.5 290 72-450 49-338 (597)
50 1jl5_A Outer protein YOPM; leu 100.0 1.9E-30 6.4E-35 274.1 30.6 237 34-304 15-267 (454)
51 1ogq_A PGIP-2, polygalacturona 100.0 3E-30 1E-34 259.6 14.9 261 31-305 37-302 (313)
52 1p9a_G Platelet glycoprotein I 100.0 1.4E-28 4.9E-33 244.2 24.8 218 167-464 6-223 (290)
53 2xwt_C Thyrotropin receptor; s 100.0 4.2E-29 1.4E-33 241.2 18.8 224 20-280 2-236 (239)
54 2o6q_A Variable lymphocyte rec 100.0 5.1E-28 1.8E-32 238.0 26.8 216 172-464 17-234 (270)
55 2z62_A TOLL-like receptor 4, v 100.0 1.1E-28 3.6E-33 243.9 19.7 235 25-284 2-238 (276)
56 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-31 1.2E-35 281.7 -0.7 382 49-452 1-443 (461)
57 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-29 1.4E-33 251.2 14.4 254 74-453 50-308 (313)
58 2z62_A TOLL-like receptor 4, v 100.0 8.8E-28 3E-32 237.3 22.1 238 151-463 12-252 (276)
59 2o6q_A Variable lymphocyte rec 100.0 1.3E-27 4.3E-32 235.3 22.2 210 20-233 3-216 (270)
60 4ay9_X Follicle-stimulating ho 100.0 3.7E-28 1.3E-32 248.4 17.9 247 21-278 1-254 (350)
61 3g06_A SSPH2 (leucine-rich rep 100.0 4.2E-27 1.4E-31 256.0 24.3 278 21-363 30-308 (622)
62 3g06_A SSPH2 (leucine-rich rep 100.0 1.9E-26 6.5E-31 250.9 28.8 259 51-427 40-298 (622)
63 3o53_A Protein LRIM1, AGAP0063 100.0 2.1E-28 7.2E-33 246.7 11.7 72 387-460 190-261 (317)
64 2z80_A TOLL-like receptor 2, v 99.9 8.8E-28 3E-32 246.1 16.0 269 16-287 24-318 (353)
65 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-29 5.6E-34 268.9 2.2 372 34-427 7-441 (461)
66 1wwl_A Monocyte differentiatio 99.9 3.2E-28 1.1E-32 244.8 9.0 243 34-285 37-311 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.5E-32 239.7 10.1 231 53-300 12-243 (317)
68 4fcg_A Uncharacterized protein 99.9 5.7E-26 1.9E-30 229.7 20.6 228 50-285 80-316 (328)
69 2v9t_B SLIT homolog 2 protein 99.9 2E-26 7E-31 218.9 16.2 200 225-539 14-214 (220)
70 1wwl_A Monocyte differentiatio 99.9 1.6E-27 5.6E-32 239.6 4.8 238 51-301 43-303 (312)
71 3m19_A Variable lymphocyte rec 99.9 1E-24 3.6E-29 211.9 23.3 171 223-464 36-208 (251)
72 3oja_A Leucine-rich immune mol 99.9 1.3E-26 4.5E-31 247.1 10.2 149 99-285 35-184 (487)
73 3m19_A Variable lymphocyte rec 99.9 2.1E-25 7.2E-30 216.8 17.3 188 21-211 3-193 (251)
74 2z66_A Variable lymphocyte rec 99.9 5.7E-25 1.9E-29 220.6 18.2 290 78-529 11-303 (306)
75 3oja_A Leucine-rich immune mol 99.9 2.6E-25 9E-30 237.0 16.0 212 73-301 33-244 (487)
76 2v70_A SLIT-2, SLIT homolog 2 99.9 9.6E-25 3.3E-29 207.4 17.7 199 225-538 14-214 (220)
77 1p9a_G Platelet glycoprotein I 99.9 5.4E-24 1.9E-28 211.1 21.6 202 25-234 3-207 (290)
78 4fcg_A Uncharacterized protein 99.9 2.3E-24 8E-29 217.8 18.9 222 72-302 79-309 (328)
79 2xwt_C Thyrotropin receptor; s 99.9 1.8E-24 6.3E-29 208.6 17.1 209 62-304 22-236 (239)
80 3zyj_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 223.4 22.2 224 31-284 65-293 (440)
81 2o6s_A Variable lymphocyte rec 99.9 1.6E-24 5.5E-29 204.2 14.7 186 22-219 1-187 (208)
82 2v9t_B SLIT homolog 2 protein 99.9 3.3E-24 1.1E-28 203.6 16.5 164 19-185 2-166 (220)
83 3zyi_A Leucine-rich repeat-con 99.9 1E-23 3.6E-28 223.3 22.1 224 31-284 76-304 (452)
84 4ay9_X Follicle-stimulating ho 99.9 2.3E-24 7.8E-29 220.3 15.8 238 54-302 12-254 (350)
85 2xot_A Amphoterin-induced prot 99.9 1.9E-24 6.4E-29 221.8 14.4 193 15-210 5-202 (361)
86 2v70_A SLIT-2, SLIT homolog 2 99.9 1.5E-23 5E-28 199.2 17.1 164 19-185 2-167 (220)
87 3rfs_A Internalin B, repeat mo 99.9 3E-24 1E-28 211.3 12.1 180 72-283 39-218 (272)
88 2xot_A Amphoterin-induced prot 99.9 6.9E-24 2.4E-28 217.5 12.9 79 383-462 131-216 (361)
89 3rfs_A Internalin B, repeat mo 99.9 4.5E-23 1.5E-27 202.9 16.1 206 50-293 40-245 (272)
90 2wfh_A SLIT homolog 2 protein 99.9 6.8E-23 2.3E-27 190.2 14.8 174 249-538 13-187 (193)
91 3ogk_B Coronatine-insensitive 99.9 1.9E-24 6.4E-29 237.4 2.6 246 51-302 73-350 (592)
92 3ogk_B Coronatine-insensitive 99.9 2.8E-24 9.4E-29 236.1 3.7 373 51-451 112-528 (592)
93 3e6j_A Variable lymphocyte rec 99.9 5.1E-22 1.8E-26 189.8 18.3 167 223-464 20-188 (229)
94 1w8a_A SLIT protein; signaling 99.9 3.6E-22 1.2E-26 185.3 16.8 115 382-538 72-187 (192)
95 4glp_A Monocyte differentiatio 99.9 6.2E-23 2.1E-27 206.0 12.4 225 52-284 65-308 (310)
96 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 8.9E-27 201.0 16.5 196 71-286 38-233 (308)
97 1h6u_A Internalin H; cell adhe 99.9 5.7E-22 1.9E-26 198.5 18.6 195 50-263 40-234 (308)
98 3goz_A Leucine-rich repeat-con 99.9 3.1E-23 1.1E-27 212.9 7.3 180 55-236 2-210 (362)
99 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.1E-27 208.6 9.0 222 79-303 3-262 (362)
100 3sb4_A Hypothetical leucine ri 99.9 7.6E-22 2.6E-26 199.7 9.9 122 50-180 24-157 (329)
101 2wfh_A SLIT homolog 2 protein 99.9 5.5E-21 1.9E-25 177.3 14.2 140 20-161 2-141 (193)
102 4glp_A Monocyte differentiatio 99.8 4.3E-21 1.5E-25 192.5 14.2 229 147-450 65-308 (310)
103 2p1m_B Transport inhibitor res 99.8 8.9E-23 3E-27 224.1 1.1 349 72-448 103-518 (594)
104 3e6j_A Variable lymphocyte rec 99.8 1.5E-20 5.1E-25 179.6 16.4 162 20-185 11-173 (229)
105 4fdw_A Leucine rich hypothetic 99.8 1.1E-19 3.6E-24 188.0 22.5 265 96-448 111-382 (401)
106 2o6s_A Variable lymphocyte rec 99.8 1.6E-20 5.3E-25 176.8 14.8 179 54-245 10-188 (208)
107 2ast_B S-phase kinase-associat 99.8 1.7E-21 5.9E-26 197.9 7.7 223 51-280 47-282 (336)
108 4fdw_A Leucine rich hypothetic 99.8 1.5E-19 5.1E-24 186.9 22.1 269 71-427 110-384 (401)
109 1w8a_A SLIT protein; signaling 99.8 2E-20 6.9E-25 173.5 12.9 140 21-162 1-142 (192)
110 2ca6_A RAN GTPase-activating p 99.8 9.6E-22 3.3E-26 203.8 4.3 215 66-284 24-288 (386)
111 2ca6_A RAN GTPase-activating p 99.8 3.2E-21 1.1E-25 199.9 6.5 246 39-287 18-320 (386)
112 2ast_B S-phase kinase-associat 99.8 5E-21 1.7E-25 194.4 6.1 254 31-292 48-315 (336)
113 3cvr_A Invasion plasmid antige 99.8 4.4E-19 1.5E-23 190.6 19.8 188 75-294 60-254 (571)
114 3sb4_A Hypothetical leucine ri 99.8 8.4E-20 2.9E-24 184.7 13.2 240 50-301 48-328 (329)
115 2o6r_A Variable lymphocyte rec 99.8 1.8E-19 6.2E-24 164.8 14.0 139 22-162 1-140 (177)
116 2p1m_B Transport inhibitor res 99.8 1.6E-21 5.5E-26 214.1 0.0 374 54-448 46-493 (594)
117 3cvr_A Invasion plasmid antige 99.8 4.8E-19 1.6E-23 190.3 17.2 187 52-269 60-253 (571)
118 1h6t_A Internalin B; cell adhe 99.8 3.3E-19 1.1E-23 176.8 13.7 175 95-287 43-217 (291)
119 4fs7_A Uncharacterized protein 99.8 1.4E-18 4.8E-23 180.3 18.8 334 63-441 59-393 (394)
120 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.7E-23 173.1 15.0 192 53-263 26-217 (291)
121 1m9s_A Internalin B; cell inva 99.8 5.4E-19 1.8E-23 192.0 10.7 191 53-262 23-213 (605)
122 1m9s_A Internalin B; cell inva 99.8 8E-19 2.7E-23 190.7 10.7 200 73-292 20-219 (605)
123 3g39_A Variable lymphocyte rec 99.8 5.4E-18 1.8E-22 153.7 14.0 118 342-464 12-131 (170)
124 4gt6_A Cell surface protein; l 99.8 5.5E-17 1.9E-21 168.3 22.7 322 63-448 51-390 (394)
125 4fs7_A Uncharacterized protein 99.7 1.9E-17 6.5E-22 171.7 18.0 318 85-446 58-376 (394)
126 1xeu_A Internalin C; cellular 99.7 6.3E-19 2.1E-23 172.0 6.4 167 52-236 20-186 (263)
127 2o6r_A Variable lymphocyte rec 99.7 2.7E-17 9.4E-22 150.3 15.3 80 383-463 71-152 (177)
128 4ezg_A Putative uncharacterize 99.7 2.1E-17 7E-22 153.9 14.1 154 71-236 41-195 (197)
129 1xeu_A Internalin C; cellular 99.7 4.4E-18 1.5E-22 166.0 9.2 171 73-286 18-188 (263)
130 4ezg_A Putative uncharacterize 99.7 8.8E-18 3E-22 156.4 9.6 150 51-210 44-194 (197)
131 2r9u_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 147.6 12.7 117 19-137 3-120 (174)
132 2r9u_A Variable lymphocyte rec 99.7 9.5E-17 3.3E-21 145.9 14.0 118 342-464 15-134 (174)
133 2ell_A Acidic leucine-rich nuc 99.7 4.3E-17 1.5E-21 147.6 11.3 143 44-189 17-165 (168)
134 3g39_A Variable lymphocyte rec 99.7 5.4E-17 1.9E-21 147.0 11.9 114 21-136 2-116 (170)
135 4gt6_A Cell surface protein; l 99.7 7.9E-16 2.7E-20 159.5 21.3 302 85-448 50-369 (394)
136 1dce_A Protein (RAB geranylger 99.7 1.5E-19 5.1E-24 195.3 -7.3 204 71-301 346-567 (567)
137 1dce_A Protein (RAB geranylger 99.7 2.7E-19 9.3E-24 193.2 -8.4 201 51-277 349-567 (567)
138 2ifg_A High affinity nerve gro 99.6 5.8E-16 2E-20 157.7 12.8 119 342-463 11-130 (347)
139 4b8c_D Glucose-repressible alc 99.6 8E-17 2.7E-21 179.4 4.9 219 51-283 173-404 (727)
140 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2E-20 137.0 9.5 128 49-179 15-148 (149)
141 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 136.9 11.2 138 71-213 21-163 (168)
142 4h09_A Hypothetical leucine ri 99.6 8E-14 2.7E-18 143.7 22.8 297 72-433 44-352 (379)
143 4h09_A Hypothetical leucine ri 99.6 1.2E-13 4.2E-18 142.3 23.3 300 51-415 46-358 (379)
144 1a9n_A U2A', U2A'; complex (nu 99.6 2.7E-15 9.2E-20 136.8 9.3 130 51-183 19-152 (176)
145 4b8c_D Glucose-repressible alc 99.6 5.6E-16 1.9E-20 172.6 4.6 187 74-280 173-369 (727)
146 2je0_A Acidic leucine-rich nuc 99.6 5.7E-15 2E-19 130.6 8.6 129 72-205 15-148 (149)
147 1a9n_A U2A', U2A'; complex (nu 99.5 6.6E-15 2.3E-19 134.2 7.6 136 69-210 14-153 (176)
148 3rfe_A Platelet glycoprotein I 99.5 1.7E-14 5.7E-19 123.4 7.5 102 392-536 12-116 (130)
149 2ifg_A High affinity nerve gro 99.5 9.1E-14 3.1E-18 141.4 10.8 115 22-161 1-118 (347)
150 1ds9_A Outer arm dynein; leuci 99.4 7.8E-15 2.7E-19 136.5 -4.9 130 52-186 24-155 (198)
151 1ds9_A Outer arm dynein; leuci 99.3 6.8E-15 2.3E-19 136.9 -10.3 41 94-136 44-84 (198)
152 3un9_A NLR family member X1; l 99.2 9.7E-13 3.3E-17 134.4 -2.3 188 73-283 71-283 (372)
153 3un9_A NLR family member X1; l 99.2 1.8E-12 6.1E-17 132.5 -1.9 96 197-293 155-262 (372)
154 3rfe_A Platelet glycoprotein I 98.7 2E-08 6.9E-13 85.5 7.2 64 21-86 1-67 (130)
155 2ra8_A Uncharacterized protein 98.7 1.6E-08 5.5E-13 102.2 5.6 58 118-179 168-227 (362)
156 2ra8_A Uncharacterized protein 98.4 4.6E-07 1.6E-11 91.5 7.0 180 68-257 133-341 (362)
157 1io0_A Tropomodulin; LRR prote 98.3 2.2E-07 7.5E-12 84.7 2.6 116 69-184 31-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.3E-12 84.7 2.3 109 51-159 36-164 (185)
159 3rw6_A Nuclear RNA export fact 98.2 2.8E-07 9.5E-12 88.4 0.5 82 95-177 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.1 7E-07 2.4E-11 85.6 2.2 82 71-153 167-258 (267)
161 3e4g_A ATP synthase subunit S, 98.1 3.3E-06 1.1E-10 75.0 5.6 84 74-157 61-150 (176)
162 3e4g_A ATP synthase subunit S, 97.9 4.5E-06 1.6E-10 74.1 2.3 86 338-423 60-149 (176)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0011 3.8E-08 59.9 5.9 113 70-182 37-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.6 0.004 1.4E-07 56.2 6.9 40 120-159 68-111 (197)
165 2lz0_A Uncharacterized protein 93.2 0.13 4.5E-06 40.6 5.3 49 374-424 6-54 (100)
166 2lz0_A Uncharacterized protein 89.2 0.62 2.1E-05 36.7 5.4 50 348-399 5-54 (100)
167 2l2t_A Receptor tyrosine-prote 56.2 3.2 0.00011 26.7 0.6 26 542-567 12-37 (44)
168 2ks1_B Epidermal growth factor 54.4 2.2 7.4E-05 27.5 -0.4 15 553-567 24-38 (44)
169 2l9u_A Receptor tyrosine-prote 41.6 11 0.00038 22.3 1.3 16 553-568 19-34 (40)
170 2k1k_A Ephrin type-A receptor 37.1 6.6 0.00022 24.4 -0.2 10 556-565 27-36 (38)
171 1iij_A ERBB-2 receptor protein 24.1 19 0.00066 21.8 0.3 14 553-566 20-33 (35)
No 1
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=487.76 Aligned_cols=522 Identities=23% Similarity=0.293 Sum_probs=343.8
Q ss_pred CceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCC-CCcccCcccccccccccE
Q psy3330 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVN-KINVLGSHNFEYQNKLLN 102 (608)
Q Consensus 25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n-~l~~i~~~~f~~l~~L~~ 102 (608)
.|.|. ...++|++.+++.||. +|+++++|+|++|.++.++ .+|.++++|++|+|++| .+..+++.+|+++++|++
T Consensus 1 ~C~~~--~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 1 SCSFD--GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp CCBTT--TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred CceEe--ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 36664 4789999999999999 9999999999999999875 58999999999999999 566788889999999999
Q ss_pred EEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChh--hhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT--AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180 (608)
Q Consensus 103 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 180 (608)
|+|++|.++.+.+++|.++++|++|+|++|.+++..+. .|.++++|++|++++|.+.+...+..|+++++|++|++++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 99999999999889999999999999999999874333 4889999999999999998876446789999999999999
Q ss_pred CCCCCCCcccccCC------------------------------------------------------------------
Q psy3330 181 NQILDVPNNVLSNL------------------------------------------------------------------ 194 (608)
Q Consensus 181 n~l~~~~~~~~~~l------------------------------------------------------------------ 194 (608)
|.+..+.+..+..+
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 88765433222110
Q ss_pred --------------------------CCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCcc
Q psy3330 195 --------------------------PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTL 248 (608)
Q Consensus 195 --------------------------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 248 (608)
...+++.|++++|.+.+..+..|.. +++|+.|++++|.++++.+..|.++++|
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 0023555555555555555555665 7777777777777777777777777888
Q ss_pred CEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCC------------Cccccc
Q psy3330 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI------------DQPLSL 316 (608)
Q Consensus 249 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~------------~~~~~~ 316 (608)
++|++++|+++++++..|.++++|+.|++++|.++.+++.+|..+++|+.|+++++.- ..+ .+.+.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~L~~L~l~~N~l~- 394 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLV- 394 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCSSCCSCSEEEEESCCCC-
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC-CcccCCCCcchhccCCCCcc-
Confidence 8888888888777767777888888888888888777777777788888888765431 110 01100
Q ss_pred CCchhhhcc-----c---------------ccc-------------c-cccCCCCCceecEEecCCCCCCC-----cChh
Q psy3330 317 SLPPLLLSL-----S---------------IPL-------------A-FSLTPLGTLKCDRLDLSGNNFSN-----IDSV 357 (608)
Q Consensus 317 ~lp~~~~~~-----~---------------~~~-------------~-~~~~~~~~~~l~~L~ls~n~l~~-----~~~~ 357 (608)
.+|...... + ++. . .........+++.|++++|.+++ ..+.
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 111110000 0 000 0 00000111233444444444432 2223
Q ss_pred hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCC
Q psy3330 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER 437 (608)
Q Consensus 358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 437 (608)
.|.++++|+.|+++. +.++.+++..|.++++|++|+|++|+ ++.+|...|. ++|+.|+|++|+|+.+++..+ .+
T Consensus 475 ~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~ 548 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VS 548 (844)
T ss_dssp CSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SS
T ss_pred hhcCcccccEEECCC-CcccccChhHccchhhhheeECCCCC-CCccChhhhh--ccccEEECCCCcCCCCChhHh--CC
Confidence 455566666666665 55666666666666666666666665 5556655444 566666666666666555443 47
Q ss_pred CCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCC
Q psy3330 438 ISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSP 517 (608)
Q Consensus 438 L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p 517 (608)
|+.+++++|||.|+|++.||..|.+... ..+.+.+....|.+|
T Consensus 549 L~~l~l~~Np~~C~c~~~~f~~~~~~~~-------------------------------------~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 549 LSVLDITHNKFICECELSTFINWLNHTN-------------------------------------VTIAGPPADIYCVYP 591 (844)
T ss_dssp CCEEEEEEECCCCSSSCCSHHHHHHHTT-------------------------------------TTTCCCGGGCCCSSC
T ss_pred cCEEEecCCCcccccccHHHHHHHHhcC-------------------------------------cccccccccCccCCc
Confidence 8999999999999999999999987321 112234567899999
Q ss_pred CcccCCcccccCCCccccCCcch-----hHHHHHHHHHHHHHHhhee---------eEeehhHHHHhHHHhhc-Cccccc
Q psy3330 518 PDIKGLEVKAVPENSVHCESNTM-----LYVLSFMLLLLSSGVICIL---------MYFIYRKRALWKNKINR-NLKHQS 582 (608)
Q Consensus 518 ~~~~g~~~~~~~~~~~~C~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 582 (608)
+.++|.++.+++.. .|..... +.++++.++++++++++++ .+|++++.+.|...+.+ ..+.+.
T Consensus 592 ~~~~g~~l~~~~~~--~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 669 (844)
T 3j0a_A 592 DSFSGVSLFSLSTE--GCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMY 669 (844)
T ss_dssp SSSCSCCTTTCCCC--CC----------CHHHHHHHHHHHHHHHTTTSHHHHC----------------CCCGGGSSSCC
T ss_pred hhhCCCccccCccc--cCCchhhccccceehhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhccccccccccce
Confidence 99999999888765 4865321 1111111111111111111 11222223333322222 223456
Q ss_pred ccccc--cccCCCcceEE
Q psy3330 583 SYVDN--CMNSHPTPILM 598 (608)
Q Consensus 583 ~~~~~--~~~~~~~~~~~ 598 (608)
.| || ||+++|++||+
T Consensus 670 ~y-d~fisy~~~d~~~v~ 686 (844)
T 3j0a_A 670 KY-DAYLCFSSKDFTWVQ 686 (844)
T ss_dssp CC-SEEEECCSTTHHHHH
T ss_pred ec-cEEEEeeCCcHHHHH
Confidence 78 99 99999999983
No 2
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.3e-51 Score=453.44 Aligned_cols=472 Identities=22% Similarity=0.285 Sum_probs=337.6
Q ss_pred CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNK 99 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~ 99 (608)
.|+.+|.|......|+|++.++++||.++|+++++|+|++|+|+.+++ +|.++++|++|+|++|+|+.+++++|+++++
T Consensus 22 ~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~ 101 (635)
T 4g8a_A 22 ESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 101 (635)
T ss_dssp ---CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence 355678887777899999999999999999999999999999999985 7999999999999999999999999999999
Q ss_pred ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEcc
Q psy3330 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLD 179 (608)
Q Consensus 100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 179 (608)
|++|+|++|+|+.+++++|.++++|++|+|++|+++++++..|+++++|++|++++|.++.+..+..+..+++|++|+++
T Consensus 102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999887657889999999999999
Q ss_pred CCCCCCCCcccccCCCC--CCceEEEccCCCCccccCCCccc--------------------------------------
Q psy3330 180 NNQILDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPF-------------------------------------- 219 (608)
Q Consensus 180 ~n~l~~~~~~~~~~l~~--~~L~~L~L~~n~l~~~~~~~~~~-------------------------------------- 219 (608)
+|+++++++..+..+.. .....++++.|.++.+.+..+..
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 99998887665432210 11234444444443332222110
Q ss_pred ------------------------------------------cCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330 220 ------------------------------------------TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257 (608)
Q Consensus 220 ------------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 257 (608)
...+++.+.+.++.+..+. .+....+++.|++.+|.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCK 339 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCE
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhccccc
Confidence 0111222222222221111 12222344444444444
Q ss_pred CCCCChh-------------------hhhCCCCCCEEeccCCCCCcc--ChhhhCCCCCCceeeccCCCC----------
Q psy3330 258 LSAIPTK-------------------QLSKLSALVNLDLSGNNFSNI--DSVAFKSLFSLKLVKINLIPN---------- 306 (608)
Q Consensus 258 l~~l~~~-------------------~~~~l~~L~~L~Ls~N~l~~~--~~~~f~~l~~L~~L~l~~~~~---------- 306 (608)
+..++.. ....+++|+.|++++|.+... .+..+..+.+|+.+++..+..
T Consensus 340 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l 419 (635)
T 4g8a_A 340 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL 419 (635)
T ss_dssp ESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred ccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccc
Confidence 3332211 123456677777777766532 233344455555555533210
Q ss_pred --CCC---CCcccccCCchh-hh--------cc---ccccccccCCCCCceecEEecCCCCC-CCcChhhhccccccccc
Q psy3330 307 --LDS---IDQPLSLSLPPL-LL--------SL---SIPLAFSLTPLGTLKCDRLDLSGNNF-SNIDSVAFKSLFSLKLV 368 (608)
Q Consensus 307 --l~~---~~~~~~~~lp~~-~~--------~~---~~~~~~~~~~~~~~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~l 368 (608)
+.. ..+......+.. +. .. .+.............++.|++++|.+ .++.+..|..+++|+.|
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 000 000000000000 00 00 00001111112233568999999975 45778889999999999
Q ss_pred ccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CC-CCCCEEEccCC
Q psy3330 369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PL-ERISFLDLSDN 446 (608)
Q Consensus 369 ~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l-~~L~~L~L~~N 446 (608)
+++. ++++.+.+.+|.++++|++|+|++|+ +..++...|.++++|++|||++|+|+++++..+ .+ ++|+.|+|++|
T Consensus 500 ~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 500 DLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp ECTT-SCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred ECCC-CccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 9998 79999999999999999999999997 899998889999999999999999999887765 55 68999999999
Q ss_pred ccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCccc
Q psy3330 447 PLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVK 526 (608)
Q Consensus 447 ~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~ 526 (608)
||.|||++.||..|++... ....+...++|++|++++|+++.
T Consensus 578 p~~C~C~~~~~~~wl~~~~--------------------------------------~~~~~~~~~~C~~P~~~~g~~l~ 619 (635)
T 4g8a_A 578 DFACTCEHQSFLQWIKDQR--------------------------------------QLLVEVERMECATPSDKQGMPVL 619 (635)
T ss_dssp CBCCSGGGHHHHHHHHHTT--------------------------------------TTBSCGGGCBBCSSTTTTTCBGG
T ss_pred CCcccCCcHHHHHHHHhCC--------------------------------------CccCCCCCceeCCchHHCCCEee
Confidence 9999999999999998431 11223457899999999999999
Q ss_pred ccCCCccccCC
Q psy3330 527 AVPENSVHCES 537 (608)
Q Consensus 527 ~~~~~~~~C~~ 537 (608)
+++ ++|+.
T Consensus 620 ~~~---~~C~~ 627 (635)
T 4g8a_A 620 SLN---ITCQM 627 (635)
T ss_dssp GCC---CCC--
T ss_pred eec---cCCCC
Confidence 884 56865
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-52 Score=460.13 Aligned_cols=463 Identities=23% Similarity=0.266 Sum_probs=339.5
Q ss_pred CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103 (608)
Q Consensus 25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L 103 (608)
+|.|......++|++.+++.+|..+|+++++|++++|.++.+++ .|.++++|++|++++|.++.+++.+|.++++|++|
T Consensus 6 ~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 6 PCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 47776566789999999999999999999999999999999876 89999999999999999999999999999999999
Q ss_pred EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 183 (608)
+|++|.++.+++.+|.++++|++|++++|.++.+++..|+++++|++|++++|.+.+...|..|+++++|++|++++|++
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 99999999998899999999999999999999998888999999999999999998754478899999999999999998
Q ss_pred CCCCcccccCCCC-------------------------CCceEEEccCCCCc----------------------------
Q psy3330 184 LDVPNNVLSNLPH-------------------------QSLHYLYLNENLIE---------------------------- 210 (608)
Q Consensus 184 ~~~~~~~~~~l~~-------------------------~~L~~L~L~~n~l~---------------------------- 210 (608)
+++++..+..+.. .+|+.|++++|.+.
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred eecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 8776543322210 12334444443321
Q ss_pred -----------------------------------------------------cccCCCccccCCCccEEEccCCCCCcc
Q psy3330 211 -----------------------------------------------------TVLDNSFPFTLTNLHTLALSSNIISFI 237 (608)
Q Consensus 211 -----------------------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~ 237 (608)
.++ .+.. +++|+.|++++|.+..+
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~-~~~L~~L~l~~n~l~~l 322 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPK-HFKWQSLSIIRCQLKQF 322 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCT-TCCCSEEEEESCCCSSC
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccc-cccCCEEEcccccCccc
Confidence 100 1121 23444444444443322
Q ss_pred C-------------------cccccCCCccCEEeccCCcCCCCC--hhhhhCCCCCCEEeccCCCCCccChhhhCCCCCC
Q psy3330 238 N-------------------ESSFVTLRTLHSLDLSNNNLSAIP--TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSL 296 (608)
Q Consensus 238 ~-------------------~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L 296 (608)
+ +..+..+++|++|++++|++++++ +..+..+++|+.|++++|.+++++ ..|..+++|
T Consensus 323 p~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L 401 (606)
T 3vq2_A 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEEL 401 (606)
T ss_dssp CCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTC
T ss_pred ccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCC
Confidence 1 123456678888888888887763 467888888999999988888876 567888888
Q ss_pred ceeeccCCCCCCCCCcccccCCchhhhcc-----ccccccccCCCCCceecEEecCCCCCCC-cChhhhccccccccccc
Q psy3330 297 KLVKINLIPNLDSIDQPLSLSLPPLLLSL-----SIPLAFSLTPLGTLKCDRLDLSGNNFSN-IDSVAFKSLFSLKLVKI 370 (608)
Q Consensus 297 ~~L~l~~~~~l~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~~~~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~l~l 370 (608)
+.|+++++...........+.++. +..+ .+............++++|++++|++++ +.+..|..+++|+.|++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 888886543111110000011111 1000 0000000001122367999999999998 57888999999999999
Q ss_pred ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCC-CCCEEEccCCccc
Q psy3330 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLE-RISFLDLSDNPLH 449 (608)
Q Consensus 371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~-~L~~L~L~~N~~~ 449 (608)
+. +.++.+.+..|.++++|++|++++|+ +..+++..|.++++|+.|+|++|+|+.+|..+..++ +|++|++++|||.
T Consensus 481 s~-n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 481 SK-CQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TT-SCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CC-CcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 98 78999999999999999999999998 766755669999999999999999999999977776 6999999999999
Q ss_pred cccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccC
Q psy3330 450 CDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP 529 (608)
Q Consensus 450 CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~ 529 (608)
|+|++.||..|++... ....+..+..|.+|+.++|+++.+++
T Consensus 559 c~c~~~~~~~~l~~~~--------------------------------------~~~~~~~~~~C~~p~~~~~~~l~~~~ 600 (606)
T 3vq2_A 559 CICEHQKFLQWVKEQK--------------------------------------QFLVNVEQMTCATPVEMNTSLVLDFN 600 (606)
T ss_dssp CSSTTHHHHTTTTTSS--------------------------------------SSBSSGGGCCCC--------------
T ss_pred cCCccHHHHHHHHcCc--------------------------------------ccccCCccceeCCChHhCCCEeeecc
Confidence 9999999999986321 11223467899999999999999887
Q ss_pred CCc
Q psy3330 530 ENS 532 (608)
Q Consensus 530 ~~~ 532 (608)
.+.
T Consensus 601 ~~~ 603 (606)
T 3vq2_A 601 NST 603 (606)
T ss_dssp ---
T ss_pred ccc
Confidence 664
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-50 Score=447.45 Aligned_cols=466 Identities=22% Similarity=0.274 Sum_probs=311.4
Q ss_pred CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
..||..|.|......++|++.+++++|..+|+.+++|++++|.++.++ .+|.++++|++|++++|.++.+.+.+|++++
T Consensus 2 ~~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 81 (606)
T 3t6q_A 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81 (606)
T ss_dssp ----CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred ccccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcc
Confidence 468999999877789999999999999999999999999999999985 5899999999999999999999999999999
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 178 (608)
+|++|+|++|+++.+.+.+|.++++|++|++++|.++.+.+..|.++++|++|++++|.+.++. ...+..+++|++|++
T Consensus 82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK-LPKGFPTEKLKVLDF 160 (606)
T ss_dssp TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC-CCTTCCCTTCCEEEC
T ss_pred ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC-cccccCCcccCEEEc
Confidence 9999999999999998889999999999999999999988888999999999999999998875 334555888888888
Q ss_pred cCCCCCCCCcccccCCCCCCce--EEEccCCCCccccC------------------------------------------
Q psy3330 179 DNNQILDVPNNVLSNLPHQSLH--YLYLNENLIETVLD------------------------------------------ 214 (608)
Q Consensus 179 ~~n~l~~~~~~~~~~l~~~~L~--~L~L~~n~l~~~~~------------------------------------------ 214 (608)
++|.++.+++..+..+ ++++ .|++++|.++++.+
T Consensus 161 ~~n~l~~~~~~~~~~l--~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSL--QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp CSSCCCEECHHHHHTT--TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred ccCcccccChhhhhhh--cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 8888887766655555 3355 55555555555444
Q ss_pred ---------------------------------CCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCC
Q psy3330 215 ---------------------------------NSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261 (608)
Q Consensus 215 ---------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l 261 (608)
..|.. +++|+.|++++|.++.+ |..+.++++|++|++++|+++++
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENL 316 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhcc-ccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcC
Confidence 33443 45555555555555543 23345555555555555555555
Q ss_pred ChhhhhCCCCCCEEeccCCCCC-ccChhhhCCCCCCceeeccCCCCCC---------------CC---CcccccCCchhh
Q psy3330 262 PTKQLSKLSALVNLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLD---------------SI---DQPLSLSLPPLL 322 (608)
Q Consensus 262 ~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~l~~~~~l~---------------~~---~~~~~~~lp~~~ 322 (608)
++..+..+++|+.|++++|.+. .+++..|..+++|+.|+++++.... .+ .+...+..|..+
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 4445555555555555555554 2333345555555555554332100 00 011111111111
Q ss_pred hccc------cc--cccccCC---C-CCceecEEecCCCCCCCcChhhhcccccccccccccC-----------------
Q psy3330 323 LSLS------IP--LAFSLTP---L-GTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLI----------------- 373 (608)
Q Consensus 323 ~~~~------~~--~~~~~~~---~-~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~----------------- 373 (608)
..++ +. ......+ + ...++++|++++|.+++.++..+..+++|+.|+++.+
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 1000 00 0000000 0 1123455666666555555555555555555555431
Q ss_pred ---------CCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEc
Q psy3330 374 ---------PNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDL 443 (608)
Q Consensus 374 ---------~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L 443 (608)
+.++.+.+..|.++++|++|++++|+ +..++...|.++++| .|+|++|+++.+++..+ .+++|+.+++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 34455555556666666666666665 444444446666666 66666666666555443 4678999999
Q ss_pred cCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCC
Q psy3330 444 SDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGL 523 (608)
Q Consensus 444 ~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~ 523 (608)
++|||.|||+..||..|++.+.. ........+|++|+.++|+
T Consensus 555 ~~N~~~c~c~~~~~~~w~~~~~~--------------------------------------~~~~~~~~~C~~p~~~~g~ 596 (606)
T 3t6q_A 555 RQNPLDCTCSNIYFLEWYKENMQ--------------------------------------KLEDTEDTLCENPPLLRGV 596 (606)
T ss_dssp TTCCEECSGGGHHHHHHHHHCGG--------------------------------------GEECGGGCBEEESGGGTTC
T ss_pred CCCCccccCCcHHHHHHHHhCcc--------------------------------------cccCCCCCeeCCchHhCCC
Confidence 99999999999999999984311 1123457899999999999
Q ss_pred cccccCC
Q psy3330 524 EVKAVPE 530 (608)
Q Consensus 524 ~~~~~~~ 530 (608)
++.+++.
T Consensus 597 ~l~~~~~ 603 (606)
T 3t6q_A 597 RLSDVTL 603 (606)
T ss_dssp BGGGCCC
T ss_pred eeeeeec
Confidence 9998864
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-50 Score=448.59 Aligned_cols=470 Identities=27% Similarity=0.378 Sum_probs=279.1
Q ss_pred CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103 (608)
Q Consensus 25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L 103 (608)
+|.|.. ..++|++.+++++|..+|+++++|+|++|.++.+++ .+.++++|++|++++|.++.+++.+|+++++|++|
T Consensus 1 ~C~~~~--~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 1 KCTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp ---CBS--SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred CceeEC--CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 367753 579999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 183 (608)
+|++|.++.+++.+|.++++|++|++++|+++++++..|.++++|++|++++|.+.+.. +..+.++++|++|++++|.+
T Consensus 79 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcc
Confidence 99999999999888999999999999999999998888999999999999999988876 67778888888888888877
Q ss_pred CCCCcccccCCCCCCceEEEccCCCCccccCC------------------------------------------------
Q psy3330 184 LDVPNNVLSNLPHQSLHYLYLNENLIETVLDN------------------------------------------------ 215 (608)
Q Consensus 184 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~------------------------------------------------ 215 (608)
+++++..+.....++|+.|++++|.++++.+.
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 76655433211112344444444444433322
Q ss_pred ---CccccCC--CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChh--------------------------
Q psy3330 216 ---SFPFTLT--NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTK-------------------------- 264 (608)
Q Consensus 216 ---~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------------------------- 264 (608)
.|.. ++ +|+.|++++|.++++.+..|..+++|++|++++|+++++++.
T Consensus 238 ~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 238 SNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp CTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred ChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 2222 21 255555555555555555555555555555555554443322
Q ss_pred -------hhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC-----------------CCCC---CCcccc--
Q psy3330 265 -------QLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP-----------------NLDS---IDQPLS-- 315 (608)
Q Consensus 265 -------~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~-----------------~l~~---~~~~~~-- 315 (608)
.|..+++|+.|++++|.++++.+..|..+++|+.|+++++. .+.. ..+.+.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 33445555566666666666666666666666666665431 0000 001111
Q ss_pred ----------------------cCCchh-hhccc------c---------cccc-------------------ccCC---
Q psy3330 316 ----------------------LSLPPL-LLSLS------I---------PLAF-------------------SLTP--- 335 (608)
Q Consensus 316 ----------------------~~lp~~-~~~~~------~---------~~~~-------------------~~~~--- 335 (608)
+.+|.. +..+. + +..+ ...+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 111100 00000 0 0000 0000
Q ss_pred CCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCc--------------------------------CChhh
Q psy3330 336 LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS--------------------------------IDQRA 383 (608)
Q Consensus 336 ~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~--------------------------------~~~~~ 383 (608)
....++++|++++|+++++++..|.++++|+.|+++. +.++. ++...
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 0112467778888888777777777777777766665 44433 33344
Q ss_pred hcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC--CCCCCCEEEccCCccccccCC-hHHHHH
Q psy3330 384 FVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPLHCDCNL-LWLWIL 460 (608)
Q Consensus 384 f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~--~l~~L~~L~L~~N~~~CdC~~-~~~~~~ 460 (608)
|.++++|++|++++|+ ++.+|..+|.++++|+.|+|++|+|+.+++..+ .+++|+.+++++|||.|||++ .||..|
T Consensus 556 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred cccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 4444455555554444 444444444555555555555555554444333 357888999999999999996 898888
Q ss_pred HHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCC
Q psy3330 461 VQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES 537 (608)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~ 537 (608)
++... .........++|++|+.++|+++.+++.....|..
T Consensus 635 ~~~~~-------------------------------------~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~ 674 (680)
T 1ziw_A 635 INETH-------------------------------------TNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674 (680)
T ss_dssp SSCC-------------------------------------------------------------------------
T ss_pred HHhcC-------------------------------------cccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence 65210 00111124679999999999999999988865544
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-48 Score=413.28 Aligned_cols=379 Identities=28% Similarity=0.445 Sum_probs=309.2
Q ss_pred CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
..||..|.|......|+|++.+++.+|..+|++++.|+|++|+++.++ ..|.++++|++|+|++|.++.+.+..|.+++
T Consensus 1 ~~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 1 TGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp CCCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CcccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 369999999987789999999999999999999999999999999986 5899999999999999999999999999999
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 178 (608)
+|++|+|++|.++.+++..|.++++|++|+|++|++..+.+..|.++++|++|++++|.+..+. +..|.++++|++|++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTL 159 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEEC
Confidence 9999999999999999888999999999999999999999999999999999999999999887 788999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258 (608)
Q Consensus 179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 258 (608)
++|+++.+++..+..+ ++|+.|++++|.+.++.+..|.. +++|+.|++++|...+..+.......+|++|++++|++
T Consensus 160 ~~n~l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 160 EKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp ESCCCSSCCHHHHTTC--TTCCEEEEESCCCCEECTTCSCS-CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred CCCcCcccChhHhccc--CCCcEEeCCCCcCcEeChhhccc-CcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 9999999888878777 55888888888888887777776 78888888887765433333333344777777777777
Q ss_pred CCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCC
Q psy3330 259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338 (608)
Q Consensus 259 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 338 (608)
+++++..+..+++|+.|+|++|+++++.+..|..+
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------------------------------------------- 271 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--------------------------------------------- 271 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC---------------------------------------------
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhcccc---------------------------------------------
Confidence 77776667777777777777777666655444443
Q ss_pred ceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEE
Q psy3330 339 LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSV 418 (608)
Q Consensus 339 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L 418 (608)
++|++|+|++|+ +..++...|.++++|+.|
T Consensus 272 -------------------------------------------------~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 272 -------------------------------------------------LRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp -------------------------------------------------TTCCEEECCSSC-CSEECTTTBTTCTTCCEE
T ss_pred -------------------------------------------------ccCCEEECCCCc-cceECHHHhcCcccCCEE
Confidence 445555555665 666655668888899999
Q ss_pred EcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhh
Q psy3330 419 SLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDR 497 (608)
Q Consensus 419 ~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (608)
+|++|+|+.+++..+ .+++|+.|++++|||.|||++.|+..|...
T Consensus 302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~---------------------------------- 347 (477)
T 2id5_A 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR---------------------------------- 347 (477)
T ss_dssp ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS----------------------------------
T ss_pred ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc----------------------------------
Confidence 999999998887765 588999999999999999999988655320
Q ss_pred hhhcCCcceeeccccccCCCCcccCCcccccCCC----ccccCCc
Q psy3330 498 IIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPEN----SVHCESN 538 (608)
Q Consensus 498 ~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~----~~~C~~~ 538 (608)
.........|.+|..++|+.+.+++.. .+.|..+
T Consensus 348 -------~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P 385 (477)
T 2id5_A 348 -------LNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRA 385 (477)
T ss_dssp -------SCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEE
T ss_pred -------cccCccCceeCCchHHcCCchhhCccccccceeEeccc
Confidence 112234678999999999998877643 4667543
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.9e-47 Score=405.48 Aligned_cols=394 Identities=25% Similarity=0.333 Sum_probs=333.4
Q ss_pred cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccc-ccccccCCCccEEEeeCCCCc-ccCcccccc
Q psy3330 19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELRSLDLSVNKIN-VLGSHNFEY 96 (608)
Q Consensus 19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l-~~~~~~~~~L~~L~Ls~n~l~-~i~~~~f~~ 96 (608)
+.+||..|.|.. ..|+|++.+++.+|. +|+++++|+|++|.++.+ +..+.++++|++|++++|.+. .+++..|.+
T Consensus 1 a~p~~~~c~~~~--~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 1 ADPGTSECSVIG--YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77 (455)
T ss_dssp ------CCEEET--TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred CCCccceeEEEc--cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc
Confidence 367999999964 479999999999999 999999999999999987 568999999999999999987 788889999
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChh--hhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT--AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 174 (608)
+++|++|+|++|.++.+.+..|.++++|++|++++|++++..+. .|.++++|++|++++|.+.+..+...|.++++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 99999999999999999888999999999999999999874443 4899999999999999999986234489999999
Q ss_pred EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCcc--------ccCCCccEEEccCCCCCccCcccccC--
Q psy3330 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP--------FTLTNLHTLALSSNIISFINESSFVT-- 244 (608)
Q Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~-- 244 (608)
+|++++|++.++.+..+..+....++.|++++|.+.+..+..+. . +++|+.|++++|.+.+..+..+..
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT-TCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc-cceeeeEecCCCcccccchhhhhccc
Confidence 99999999999988877766446799999999999987765432 3 578999999999998766665543
Q ss_pred -CCccCEEeccCCcCCC----------CChhhhhC--CCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCC
Q psy3330 245 -LRTLHSLDLSNNNLSA----------IPTKQLSK--LSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311 (608)
Q Consensus 245 -l~~L~~L~Ls~n~l~~----------l~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~ 311 (608)
.++|+.|++++|.+.. .....+.+ .++|+.|++++|.++++.+..|..+++|+.
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~------------- 303 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ------------- 303 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE-------------
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE-------------
Confidence 3789999999885543 22222333 358999999999999888888877777654
Q ss_pred cccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccc
Q psy3330 312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE 391 (608)
Q Consensus 312 ~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~ 391 (608)
|++++|+++++++..|.++++|+.|+++. +.++.+.+..|.++++|+
T Consensus 304 --------------------------------L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 304 --------------------------------LTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp --------------------------------EECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGTTCTTCC
T ss_pred --------------------------------EECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhcCcccCC
Confidence 55578888888888888999999999988 788888888999999999
Q ss_pred eeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL 463 (608)
Q Consensus 392 ~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~ 463 (608)
+|++++|+ ++.+++..|.++++|++|+|++|+|+.+|+..+ .+++|++|++++|||.|+|+ ..|+..|++.
T Consensus 351 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 351 VLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred EEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence 99999998 777766679999999999999999999998775 68999999999999999998 7899999874
No 8
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-46 Score=408.23 Aligned_cols=406 Identities=19% Similarity=0.219 Sum_probs=305.6
Q ss_pred CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
..|+..|.|... ..++|++.+++.+|..+++++++|++++|.++.++ .++.++++|++|++++|+++++++.+|.+++
T Consensus 22 ~~~~~~~~~~~~-~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 22 VGSMTPFSNELE-SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp -----------C-CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred hccccccccCCC-cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 445555677654 79999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc--cE
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL--RI 175 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~ 175 (608)
+|++|+|++|+++.++.. .+++|++|++++|+++.++ +..|+++++|++|++++|.+.... +..+++| ++
T Consensus 101 ~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~ 173 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSC 173 (562)
T ss_dssp TCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEE
T ss_pred CCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeE
Confidence 999999999999999865 7999999999999999876 478999999999999999998743 4455555 99
Q ss_pred EEccCCCC--CCCCcccccCCC------------------------CCCceEEEccCCCC--------------------
Q psy3330 176 LKLDNNQI--LDVPNNVLSNLP------------------------HQSLHYLYLNENLI-------------------- 209 (608)
Q Consensus 176 L~L~~n~l--~~~~~~~~~~l~------------------------~~~L~~L~L~~n~l-------------------- 209 (608)
|++++|.+ ....+..+..+. .++|+.+++++|..
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99999988 655555444432 02244444444320
Q ss_pred --------c-----cccCCCccccCCCccEEEccCCCCCccCcccc-----cCC--------------------------
Q psy3330 210 --------E-----TVLDNSFPFTLTNLHTLALSSNIISFINESSF-----VTL-------------------------- 245 (608)
Q Consensus 210 --------~-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l-------------------------- 245 (608)
. +..+ .+ . .++|++|++++|.+++..|..+ ..+
T Consensus 254 L~L~~~~l~~~~~~~~~~-~~-~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQ-FF-W-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEECHHHHHHHHH-HH-T-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred EEecCCcCcHHHHHHHHH-hh-h-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 0 0000 00 0 1256666666666553333322 222
Q ss_pred CccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcc
Q psy3330 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSL 325 (608)
Q Consensus 246 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~ 325 (608)
.+|++|++++|.+..++ ....+++|+.|++++|.+++..+..|..+++|+.|+++++. +.... .+|..+.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~~-- 400 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFF-----KVALMTK-- 400 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTT-----HHHHTTT--
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcc-----cchhhhc--
Confidence 34677777777766554 12678899999999999999888889999999999996432 11110 1111111
Q ss_pred ccccccccCCCCCceecEEecCCCCCCC-cChhhhcccccccccccccCCCCCcCChhhhcCC-cccceeecccCccccc
Q psy3330 326 SIPLAFSLTPLGTLKCDRLDLSGNNFSN-IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN-IQLETVIINENMNLKQ 403 (608)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l-~~L~~L~Ls~N~~l~~ 403 (608)
...++++|++++|++++ ++...+..+++|+.|+++. +.++... +..+ ++|++|++++|+ ++.
T Consensus 401 -----------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~~L~~L~L~~N~-l~~ 464 (562)
T 3a79_B 401 -----------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS-NMLTGSV---FRCLPPKVKVLDLHNNR-IMS 464 (562)
T ss_dssp -----------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS-SCCCGGG---GSSCCTTCSEEECCSSC-CCC
T ss_pred -----------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC-CCCCcch---hhhhcCcCCEEECCCCc-Ccc
Confidence 12256899999999999 8888899999999999998 6665433 3334 699999999997 889
Q ss_pred cCcccCCCCCCCCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCChHHHH-HHHh
Q psy3330 404 LPSKLFQGNTNLKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNLLWLWI-LVQL 463 (608)
Q Consensus 404 lp~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~~~~~~-~~~~ 463 (608)
+|..++ ++++|+.|+|++|+|+++|+. +..+++|+.|++++|||.|||++.|+.. |.+.
T Consensus 465 ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 525 (562)
T 3a79_B 465 IPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525 (562)
T ss_dssp CCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHH
T ss_pred cChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHh
Confidence 999866 899999999999999999998 5579999999999999999999999965 8763
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=411.27 Aligned_cols=429 Identities=22% Similarity=0.266 Sum_probs=335.5
Q ss_pred CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103 (608)
Q Consensus 25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L 103 (608)
.|.|......++|++.+++++|..+|+++++|++++|.++.++. +|.++++|++|++++|+++.+++.+|+++++|++|
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence 58888777899999999999999999999999999999999875 89999999999999999999999999999999999
Q ss_pred EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 183 (608)
+|++|.++.+++.+|.++++|++|++++|+++.+++..|+++++|++|++++|.+..+..|..|+++++|++|++++|++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred eCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 99999999999999999999999999999999998878999999999999999999854478899999999999999999
Q ss_pred CCCCcccccCCCCCCc----eEEEccCCCCccccCCCc------------------------------------------
Q psy3330 184 LDVPNNVLSNLPHQSL----HYLYLNENLIETVLDNSF------------------------------------------ 217 (608)
Q Consensus 184 ~~~~~~~~~~l~~~~L----~~L~L~~n~l~~~~~~~~------------------------------------------ 217 (608)
+.+++..+..+ .++ +.+++++|.++++.+..|
T Consensus 162 ~~~~~~~~~~l--~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 162 QSIYCTDLRVL--HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CEECGGGGHHH--HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ceecHHHccch--hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 98877666554 234 567777766655544333
Q ss_pred ---------------------------------------cccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330 218 ---------------------------------------PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258 (608)
Q Consensus 218 ---------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 258 (608)
.. +++|+.|++++|.+.++ +..+..+ +|++|++++|.+
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~l-~~~~~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERV-KDFSYNF-GWQHLELVNCKF 316 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEECSC-CBCCSCC-CCSEEEEESCBC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccchhh-hhhhccC-CccEEeeccCcc
Confidence 32 56677777777766654 3344444 666666666666
Q ss_pred CCCChhhh-------------------hCCCCCCEEeccCCCCCccC--hhhhCCCCCCceeeccCCCCCCCCCcccccC
Q psy3330 259 SAIPTKQL-------------------SKLSALVNLDLSGNNFSNID--SVAFKSLFSLKLVKINLIPNLDSIDQPLSLS 317 (608)
Q Consensus 259 ~~l~~~~~-------------------~~l~~L~~L~Ls~N~l~~~~--~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~ 317 (608)
+.+|...+ ..+++|+.|++++|.+++.. +..+..+++|+.|+++++.... .... .+.
T Consensus 317 ~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~ 394 (570)
T 2z63_A 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLG 394 (570)
T ss_dssp SSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EET
T ss_pred cccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc-ccc
Confidence 65553222 45677888888888887765 5567788888888886543110 0000 001
Q ss_pred Cchhhhccccc-----cccc-cCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCC-cCChhhhcCCccc
Q psy3330 318 LPPLLLSLSIP-----LAFS-LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD-SIDQRAFVDNIQL 390 (608)
Q Consensus 318 lp~~~~~~~~~-----~~~~-~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~-~~~~~~f~~l~~L 390 (608)
++. +..+.+. .... .......++++|++++|.+.+..+..|.++++|+.|+++. +.+. ...+..|.++++|
T Consensus 395 l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 395 LEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNL 472 (570)
T ss_dssp CTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTC
T ss_pred cCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC-CcCccccchhhhhcccCC
Confidence 110 0000000 0000 0011223679999999999999999999999999999998 5554 3455788999999
Q ss_pred ceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHH-HHHHh
Q psy3330 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW-ILVQL 463 (608)
Q Consensus 391 ~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~-~~~~~ 463 (608)
++|++++|+ +..+++..|..+++|+.|+|++|+++.+++..+ .+++|+.|++++|||.|+|+..|+. .|++.
T Consensus 473 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 473 TFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp CEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence 999999998 777766669999999999999999999987755 7899999999999999999998887 99884
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-45 Score=402.50 Aligned_cols=422 Identities=21% Similarity=0.261 Sum_probs=296.0
Q ss_pred CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNK 99 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~ 99 (608)
.||+.|.| +|++.+++++|..+++++++|++++|.++.++ ..+.++++|++|++++|+++.+++.+|.++++
T Consensus 3 ~C~~~~~c-------~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDASGVC-------DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECTTSEE-------ECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCceE-------ECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 58888876 67889999999999999999999999999875 58999999999999999999999999999999
Q ss_pred ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCC-CCccCchhhhcCCCCccEEE
Q psy3330 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILK 177 (608)
Q Consensus 100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~ 177 (608)
|++|++++|.++++++..|.++++|++|++++|.++.+. +..|.++++|++|++++|. +..++ +..|.++++|++|+
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELE 154 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeee
Confidence 999999999999999999999999999999999998753 4678999999999999998 55554 67899999999999
Q ss_pred ccCCCCCCCCcccccCCCC----------------------CCceEEEccCCCCcccc--CCCccccCCCccEEEccCCC
Q psy3330 178 LDNNQILDVPNNVLSNLPH----------------------QSLHYLYLNENLIETVL--DNSFPFTLTNLHTLALSSNI 233 (608)
Q Consensus 178 L~~n~l~~~~~~~~~~l~~----------------------~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~ 233 (608)
+++|++.+..+..+..++. ++|+.|++++|.+++.. +..+...+++|+.|++++|.
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 9999998766665555421 34555555555555431 00110012222222222221
Q ss_pred C----------------------------CccCc---------c--------------------------cccCCCccCE
Q psy3330 234 I----------------------------SFINE---------S--------------------------SFVTLRTLHS 250 (608)
Q Consensus 234 l----------------------------~~~~~---------~--------------------------~~~~l~~L~~ 250 (608)
+ .++.. . .+....+|+.
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence 1 11000 0 0011235667
Q ss_pred EeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh---hhhCCCCCCceeeccCCCCCCCCCc--ccccCCchh----
Q psy3330 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS---VAFKSLFSLKLVKINLIPNLDSIDQ--PLSLSLPPL---- 321 (608)
Q Consensus 251 L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~f~~l~~L~~L~l~~~~~l~~~~~--~~~~~lp~~---- 321 (608)
|++++|+++.+|...+..+++|+.|++++|++++..+ ..+..+++|+.|+++++.- ..... ...+.++..
T Consensus 315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEE
Confidence 7777777777776555677788888888887776543 2356677777777764321 11000 000001000
Q ss_pred hhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccc
Q psy3330 322 LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401 (608)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l 401 (608)
+....+..... ......++++|++++|++++++.... ++|+.|+++. ++++.+. .++++|++|++++|+ +
T Consensus 394 Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~-N~l~~~~----~~l~~L~~L~Ls~N~-l 463 (549)
T 2z81_A 394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSN-NNLDSFS----LFLPRLQELYISRNK-L 463 (549)
T ss_dssp CTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSC---TTCSEEECCS-SCCSCCC----CCCTTCCEEECCSSC-C
T ss_pred CCCCCCccCCh-hhcccccccEEECCCCCcccccchhc---CCceEEECCC-CChhhhc----ccCChhcEEECCCCc-c
Confidence 00000000000 00011245677777777766554332 4667777766 5565542 478999999999997 8
Q ss_pred cccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL 463 (608)
Q Consensus 402 ~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~ 463 (608)
+.+|.. ..+++|+.|+|++|+++.+++..+ .+++|+.|++++|||.|+|+ ..|+..|++.
T Consensus 464 ~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 464 KTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp SSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 899974 568999999999999999888754 78999999999999999998 5788889874
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-45 Score=393.05 Aligned_cols=396 Identities=19% Similarity=0.215 Sum_probs=300.9
Q ss_pred ceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330 32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110 (608)
Q Consensus 32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i 110 (608)
.+.++|++.+++.+|..+++++++|++++|.++.++ ..+.++++|++|++++|+++++++..|+++++|++|+|++|++
T Consensus 2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred cceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 367999999999999999999999999999999987 4899999999999999999999999999999999999999999
Q ss_pred CCCChhhhcCCCcCcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc--cEEEccCCCC--CC
Q psy3330 111 SALSKDTFKGLKELKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL--RILKLDNNQI--LD 185 (608)
Q Consensus 111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~ 185 (608)
+.++.. .+++|++|++++|.++++. |..|+++++|++|++++|.+... .+..+++| ++|++++|.+ ..
T Consensus 82 ~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 VKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccc
Confidence 988764 8999999999999999863 68899999999999999998763 36777777 9999999988 44
Q ss_pred CCcccccCCC------------------------CCCceEEEccCCC-------CccccCCCccc---------------
Q psy3330 186 VPNNVLSNLP------------------------HQSLHYLYLNENL-------IETVLDNSFPF--------------- 219 (608)
Q Consensus 186 ~~~~~~~~l~------------------------~~~L~~L~L~~n~-------l~~~~~~~~~~--------------- 219 (608)
..+..+..+. .++|+.+++++|. +.+..+ .+..
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 4443333321 0223333333332 110000 0000
Q ss_pred -----------cCCCccEEEccCCCCCccCcccc-----cCCCc--------------------------cCEEeccCCc
Q psy3330 220 -----------TLTNLHTLALSSNIISFINESSF-----VTLRT--------------------------LHSLDLSNNN 257 (608)
Q Consensus 220 -----------~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~--------------------------L~~L~Ls~n~ 257 (608)
..++|+.|++++|.+++..|..+ ..+++ |+.|++++|.
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 01244444444444443333333 34444 5555555555
Q ss_pred CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCccccc--CCchhhhccccccccccCC
Q psy3330 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSL--SLPPLLLSLSIPLAFSLTP 335 (608)
Q Consensus 258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~--~lp~~~~~~~~~~~~~~~~ 335 (608)
+..++ .+..+++|++|++++|++++..+..+..+++|+.|+++++. +.+ .+|..+..
T Consensus 314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--------l~~l~~~~~~~~~----------- 372 (520)
T 2z7x_B 314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ--------LKELSKIAEMTTQ----------- 372 (520)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC--------CCBHHHHHHHHTT-----------
T ss_pred ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc--------cCccccchHHHhh-----------
Confidence 54443 12678899999999999998777888899999999996432 221 22222211
Q ss_pred CCCceecEEecCCCCCCC-cChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCC
Q psy3330 336 LGTLKCDRLDLSGNNFSN-IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN 414 (608)
Q Consensus 336 ~~~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~ 414 (608)
..++++|++++|++++ ++...+..+++|+.|+++. +.++...+..+. ++|++|++++|+ ++.+|...+ .+++
T Consensus 373 --l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~-~l~~ 445 (520)
T 2z7x_B 373 --MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVV-KLEA 445 (520)
T ss_dssp --CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGG-GCTT
T ss_pred --CCCCCEEECCCCcCCcccccchhccCccCCEEECcC-CCCCcchhhhhc--ccCCEEECCCCc-ccccchhhh-cCCC
Confidence 1256899999999999 7777799999999999998 666654444443 799999999997 889999855 8999
Q ss_pred CCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCChHH-HHHHHh
Q psy3330 415 LKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNLLWL-WILVQL 463 (608)
Q Consensus 415 L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~~~~-~~~~~~ 463 (608)
|+.|+|++|+|+.+|.. +..+++|++|++++|||.|+|++.|+ ..|.+.
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHh
Confidence 99999999999999998 44789999999999999999999999 899874
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-42 Score=388.31 Aligned_cols=292 Identities=21% Similarity=0.205 Sum_probs=143.2
Q ss_pred CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL 227 (608)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 227 (608)
|++|++++|.+.+.. +..+.++++|++|++++|.+++..+..+..+ ++|+.|++++|.+++..+..+.. +++|+.|
T Consensus 396 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L 471 (768)
T 3rgz_A 396 LQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMY-VKTLETL 471 (768)
T ss_dssp CCEEECCSSEEEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGG-CTTCCEE
T ss_pred ccEEECCCCcccccc-CHHHhcCCCCCEEECcCCcccCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcC-CCCceEE
Confidence 333333333333332 3344444444444444444444433344444 23444444444444444444443 4444444
Q ss_pred EccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330 228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307 (608)
Q Consensus 228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l 307 (608)
++++|.+++..|..+.++++|++|++++|++++..|.++..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls----- 546 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN----- 546 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC-----
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC-----
Confidence 444444444444444444444445554444443333444444445555555554444444444444444444442
Q ss_pred CCCCcccccCCchhhhcccccccccc---------------------------CCC------CCceecEEecCCCCCCCc
Q psy3330 308 DSIDQPLSLSLPPLLLSLSIPLAFSL---------------------------TPL------GTLKCDRLDLSGNNFSNI 354 (608)
Q Consensus 308 ~~~~~~~~~~lp~~~~~~~~~~~~~~---------------------------~~~------~~~~l~~L~ls~n~l~~~ 354 (608)
.+.+.|.+|..+........... ... .......++++.|.++|.
T Consensus 547 ---~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 547 ---TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ---SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ---CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 33444455544332110000000 000 000112234444555555
Q ss_pred ChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCccc-ccCCCCC
Q psy3330 355 DSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS-HLEASHF 433 (608)
Q Consensus 355 ~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~-~l~~~~~ 433 (608)
.+..+..+++|+.++++. +++++..+..|+++++|+.|+|++|++.+.+|.. |+++++|+.|||++|+++ .+|..+.
T Consensus 624 ~~~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCCSCSSSBCCCEEECCS-SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred CchhhhccccccEEECcC-CcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChHHh
Confidence 555556666666666666 5666666666666666666666666644566655 666666666666666666 5555555
Q ss_pred CCCCCCEEEccCCccccccC
Q psy3330 434 PLERISFLDLSDNPLHCDCN 453 (608)
Q Consensus 434 ~l~~L~~L~L~~N~~~CdC~ 453 (608)
.+++|++|++++|++.+..|
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GCCCCSEEECCSSEEEEECC
T ss_pred CCCCCCEEECcCCcccccCC
Confidence 66666666666666666443
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-41 Score=382.13 Aligned_cols=415 Identities=22% Similarity=0.139 Sum_probs=315.6
Q ss_pred eEEEecCCCCc-cccCccC---ccccEEEeccCCCcc-cccccccCCCccEEEeeCCCCc-ccCcccccccccccEEEcc
Q psy3330 33 LEASCTDAGLE-VVPIQLN---PEVQTIILRENRISN-VHYTLSFYIELRSLDLSVNKIN-VLGSHNFEYQNKLLNLNIS 106 (608)
Q Consensus 33 ~~v~C~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~-l~~~~~~~~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls 106 (608)
..++.++..++ .+|..+. +++++|++++|.+++ +|..++++++|++|++++|.++ .++...|.++++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 34555555554 5555442 677888888887773 5567777788888888888776 5665557777777777777
Q ss_pred CCCCCCCChhhhcC---------------------------CCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCC
Q psy3330 107 YNEISALSKDTFKG---------------------------LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159 (608)
Q Consensus 107 ~n~i~~~~~~~~~~---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 159 (608)
+|.+++..+..+.+ +++|++|++++|++++..+..|.++++|++|++++|.++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 77665332233322 456777777777777677888999999999999999999
Q ss_pred ccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCc
Q psy3330 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239 (608)
Q Consensus 160 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 239 (608)
+.. |..|..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+++..+..+.. +++|+.|++++|++++..|
T Consensus 432 ~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 432 GTI-PSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCC
T ss_pred Ccc-cHHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCC
Confidence 877 7889999999999999999998777778888 66999999999999998888987 9999999999999998889
Q ss_pred ccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCc-------
Q psy3330 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ------- 312 (608)
Q Consensus 240 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~------- 312 (608)
..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.....+..+.+.....+....+
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 9999999999999999999976667899999999999999999987777776665555444322110000000
Q ss_pred -------ccccCCchhhhcccccccc-----------ccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCC
Q psy3330 313 -------PLSLSLPPLLLSLSIPLAF-----------SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374 (608)
Q Consensus 313 -------~~~~~lp~~~~~~~~~~~~-----------~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~ 374 (608)
.+.+..+..+......... ........++++||+++|+++|..|..++++++|+.|+++. |
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N 666 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-N 666 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS-S
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC-C
Confidence 0111112111111100000 00001123578999999999999999999999999999999 8
Q ss_pred CCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccC
Q psy3330 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN 453 (608)
Q Consensus 375 ~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~ 453 (608)
.+++..+..|+++++|++|+|++|++.+.+|.. |+.+++|++|||++|+++...+....+.++....+.+||.-|.-+
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 999999999999999999999999977788886 899999999999999999443344455667777889999988643
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=348.76 Aligned_cols=310 Identities=28% Similarity=0.471 Sum_probs=194.7
Q ss_pred ccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccc
Q psy3330 18 NKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEY 96 (608)
Q Consensus 18 ~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~ 96 (608)
.+..||..|.|......|+|++.+++.+|..++++++.|+|++|.++.++ ..|.++++|++|+|++|.++.+++..|.+
T Consensus 31 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp --CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred ccccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 45789999999877789999999999999998888877777777776655 35555555555555555555555555555
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 176 (608)
+++|++|+|++|+++.+++..|.+ +++|++|++++|.+..++ +..|.++++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~------------------------l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L 165 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVY------------------------LSKLKELWLRNNPIESIP-SYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCS------------------------CSSCCEEECCSCCCCEEC-TTTTTTCTTCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhc------------------------cccCceeeCCCCcccccC-HHHhhhCcccCEe
Confidence 555555555555555554444444 444445555444444443 3344444444444
Q ss_pred EccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC
Q psy3330 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN 256 (608)
Q Consensus 177 ~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 256 (608)
++++|+. +..+.+..|.++++|++|++++|
T Consensus 166 ~l~~~~~--------------------------------------------------l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 166 DLGELKR--------------------------------------------------LSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp ECCCCTT--------------------------------------------------CCEECTTTTTTCSSCCEEECTTS
T ss_pred CCCCCCC--------------------------------------------------cceeCcchhhcccccCeecCCCC
Confidence 4443210 01111122333444444555555
Q ss_pred cCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCC
Q psy3330 257 NLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPL 336 (608)
Q Consensus 257 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 336 (608)
+++.+| .+..+++|+.|+|++|+++++.+..|..+++|
T Consensus 196 ~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------- 233 (440)
T 3zyj_A 196 NLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---------------------------------------- 233 (440)
T ss_dssp CCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------
T ss_pred cCcccc--ccCCCcccCEEECCCCccCccChhhhccCccC----------------------------------------
Confidence 554444 24555666666666666666555544444333
Q ss_pred CCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCC
Q psy3330 337 GTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLK 416 (608)
Q Consensus 337 ~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~ 416 (608)
++|++++|+ +..++..+|.++++|+
T Consensus 234 ------------------------------------------------------~~L~L~~n~-l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 234 ------------------------------------------------------QKLWMIQSQ-IQVIERNAFDNLQSLV 258 (440)
T ss_dssp ------------------------------------------------------CEEECTTCC-CCEECTTSSTTCTTCC
T ss_pred ------------------------------------------------------CEEECCCCc-eeEEChhhhcCCCCCC
Confidence 334444454 5555556677788888
Q ss_pred EEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhh
Q psy3330 417 SVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRV 495 (608)
Q Consensus 417 ~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (608)
.|+|++|+|+.++...+ .+++|+.|+|++|||.|||.+.||..|++.....
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~---------------------------- 310 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPS---------------------------- 310 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCS----------------------------
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhcccc----------------------------
Confidence 88888888888887766 5889999999999999999999999999832100
Q ss_pred hhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330 496 DRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538 (608)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~ 538 (608)
.......|.+|+.++|+.+.+++...+.|..+
T Consensus 311 -----------~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P 342 (440)
T 3zyj_A 311 -----------NTACCARCNTPPNLKGRYIGELDQNYFTCYAP 342 (440)
T ss_dssp -----------SCSCCCBEEESTTTTTCBCC----CCSCCCCC
T ss_pred -----------CCccccCCCChhHhcCccHhHhhhhhccCCCC
Confidence 01135689999999999999999988899754
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=2.7e-39 Score=343.22 Aligned_cols=309 Identities=28% Similarity=0.448 Sum_probs=196.2
Q ss_pred ccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccc
Q psy3330 18 NKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEY 96 (608)
Q Consensus 18 ~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~ 96 (608)
....||..|.|......|+|++.+++.+|..+|+++++|+|++|.++.++ ..|.++++|++|+|++|.++.+++..|.+
T Consensus 42 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 42 GPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp --CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 35689999999877789999999999999999888888887777777664 35666666666666666666666556666
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 176 (608)
+++|++|+|++|+++.+++..|.++++|++|+|++|+++.+++. .|.++++|+.|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~~~l~~L~~L 176 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-------------------------AFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT-------------------------TTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh-------------------------HHhcCCcccEE
Confidence 66666666666666555555555555555555555555544444 44555555555
Q ss_pred EccCC-CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330 177 KLDNN-QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255 (608)
Q Consensus 177 ~L~~n-~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 255 (608)
++++| .+..++. ..|.++++|++|++++
T Consensus 177 ~l~~~~~l~~i~~---------------------------------------------------~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 177 DLGELKKLEYISE---------------------------------------------------GAFEGLFNLKYLNLGM 205 (452)
T ss_dssp ECCCCTTCCEECT---------------------------------------------------TTTTTCTTCCEEECTT
T ss_pred eCCCCCCccccCh---------------------------------------------------hhccCCCCCCEEECCC
Confidence 55442 1111111 1122233333333333
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCC
Q psy3330 256 NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTP 335 (608)
Q Consensus 256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 335 (608)
|+++++| .+..+++|+.|+|++|.++++.+..|..+++|+
T Consensus 206 n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-------------------------------------- 245 (452)
T 3zyi_A 206 CNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK-------------------------------------- 245 (452)
T ss_dssp SCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC--------------------------------------
T ss_pred Ccccccc--cccccccccEEECcCCcCcccCcccccCccCCC--------------------------------------
Confidence 4343333 134445555566666655555554444443333
Q ss_pred CCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCC
Q psy3330 336 LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL 415 (608)
Q Consensus 336 ~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L 415 (608)
+|++++|+ +..++...|.++++|
T Consensus 246 --------------------------------------------------------~L~L~~n~-l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 246 --------------------------------------------------------KLWVMNSQ-VSLIERNAFDGLASL 268 (452)
T ss_dssp --------------------------------------------------------EEECTTSC-CCEECTTTTTTCTTC
T ss_pred --------------------------------------------------------EEEeCCCc-CceECHHHhcCCCCC
Confidence 33333443 444444456677778
Q ss_pred CEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhh
Q psy3330 416 KSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQR 494 (608)
Q Consensus 416 ~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (608)
+.|+|++|+|+.+|+..+ .+++|+.|+|++|||.|||++.|+..|.+.....
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~--------------------------- 321 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPT--------------------------- 321 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC-----------------------------
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCcc---------------------------
Confidence 888888888887777665 5889999999999999999999999999843110
Q ss_pred hhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330 495 VDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538 (608)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~ 538 (608)
.......|.+|+.++|+.+.+++...+.|..+
T Consensus 322 ------------~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P 353 (452)
T 3zyi_A 322 ------------NSTCCGRCHAPMHMRGRYLVEVDQASFQCSAP 353 (452)
T ss_dssp -------------CCSSCBEEESTTTTTCBTTSCCGGGCCCCCC
T ss_pred ------------CCccCcEeCCchHhccchhhccchhhhcccCc
Confidence 01124679999999999998888888888654
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=364.84 Aligned_cols=388 Identities=25% Similarity=0.329 Sum_probs=253.1
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCC-CCCCCChhhhcCCCcCcEeeccCC
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
+..+.++++++.+|. ..++|++|+|++|.++.+.+..|.++++|++|+|++| .+..+++.+|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467889999999997 4689999999999999999999999999999999999 456777889999999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccC-chhhhcCCCCccEEEccCCCCCCCCc-ccccCCCCCCceEEEccCCCCc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFE-DSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
.++.+.+..|.++++|++|+|++|.+.+.. ....|.++++|++|++++|.+.++++ ..+..+ ++|++|++++|.++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCcCC
Confidence 999999999999999999999999998743 13459999999999999999998765 467888 56999999999886
Q ss_pred cccCCCccc-------------------------c---------------------------------------------
Q psy3330 211 TVLDNSFPF-------------------------T--------------------------------------------- 220 (608)
Q Consensus 211 ~~~~~~~~~-------------------------~--------------------------------------------- 220 (608)
+..+..+.. .
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 543322211 0
Q ss_pred -----------------------CCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEec
Q psy3330 221 -----------------------LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277 (608)
Q Consensus 221 -----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~L 277 (608)
.++|+.|++++|.+.++.+..|..+++|+.|+|++|+++++++..|.++++|+.|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 023445555555555555555666666777777777776666666677777777777
Q ss_pred cCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchh----hhccccccc---------------cccCCCCC
Q psy3330 278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPL----LLSLSIPLA---------------FSLTPLGT 338 (608)
Q Consensus 278 s~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~----~~~~~~~~~---------------~~~~~~~~ 338 (608)
++|.++++.+..|..+++|+.|+++++. +..........++.. +....+... ..-.+...
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~ 400 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc
Confidence 7777776666667777777777775442 111111111111110 000000000 00000111
Q ss_pred ceecEEecCCCCCCCcChh-hhcccccccccccccCCCCCcC------------------------------ChhhhcCC
Q psy3330 339 LKCDRLDLSGNNFSNIDSV-AFKSLFSLKLVKINLIPNLDSI------------------------------DQRAFVDN 387 (608)
Q Consensus 339 ~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~l~l~~~~~l~~~------------------------------~~~~f~~l 387 (608)
..++.|++++|++++++.. .+.++++|+.|+++. ++++.+ .+..|.++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCC-CcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 1234444444444443322 233455555555554 333322 22345555
Q ss_pred cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
++|++|+|++|+ ++.++...|.++++|+.|+|++|+|+.+|+..+. ++|+.|+|++|.+..
T Consensus 480 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 480 SHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccccEEECCCCc-ccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 666666666664 5555555566666666666666666666555554 556666666666654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-39 Score=355.92 Aligned_cols=357 Identities=18% Similarity=0.235 Sum_probs=249.0
Q ss_pred ccccccccCCCccEEEeeCCCCcc------------------cCccccc--ccccccEEEccCCCCCCCChhhhcCCCcC
Q psy3330 65 NVHYTLSFYIELRSLDLSVNKINV------------------LGSHNFE--YQNKLLNLNISYNEISALSKDTFKGLKEL 124 (608)
Q Consensus 65 ~l~~~~~~~~~L~~L~Ls~n~l~~------------------i~~~~f~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 124 (608)
++|..++++++|++|+|++|.+++ +|. .++ ++++|++|+|++|.+.+..|..|.++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 355666777777777777777776 443 455 67777777777777666555667777777
Q ss_pred cEeeccCCc-CCc-cChhhhCCC------CCCcEEEccCCCCCccCchh--hhcCCCCccEEEccCCCCC-CCCcccccC
Q psy3330 125 KTLDLSYNK-ISV-INKTAFRDT------LHLELLILSFNNITYFEDSE--IFSSLKSLRILKLDNNQIL-DVPNNVLSN 193 (608)
Q Consensus 125 ~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 193 (608)
++|++++|+ +++ ..|..+..+ ++|++|++++|.++.+ |. .++++++|++|++++|++. .+| .+..
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i--p~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~ 351 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF--PVETSLQKMKKLGMLECLYNQLEGKLP--AFGS 351 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC--CCHHHHTTCTTCCEEECCSCCCEEECC--CCEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc--CchhhhccCCCCCEEeCcCCcCccchh--hhCC
Confidence 777777776 665 345555444 6777777777777754 33 6777777777777777777 555 4555
Q ss_pred CCCCCceEEEccCCCCccccCCCccccCCC-ccEEEccCCCCCccCcccccCCC--ccCEEeccCCcCCCCChhhhh---
Q psy3330 194 LPHQSLHYLYLNENLIETVLDNSFPFTLTN-LHTLALSSNIISFINESSFVTLR--TLHSLDLSNNNLSAIPTKQLS--- 267 (608)
Q Consensus 194 l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~--- 267 (608)
+ ++|+.|++++|.++.++ ..+.. +++ |+.|++++|.++.+ |..+..++ +|++|++++|++++..+..+.
T Consensus 352 l--~~L~~L~L~~N~l~~lp-~~l~~-l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 352 E--IKLASLNLAYNQITEIP-ANFCG-FTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp E--EEESEEECCSSEEEECC-TTSEE-ECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred C--CCCCEEECCCCcccccc-Hhhhh-hcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 5 44777777777777443 34554 666 77777777777754 34454433 677777777777776555565
Q ss_pred ----CCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecE
Q psy3330 268 ----KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDR 343 (608)
Q Consensus 268 ----~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~ 343 (608)
.+++|+.|++++|.++.+++..|..+++|+.|+++++. +. .+|........+. .-...++++
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~--------l~-~i~~~~~~~~~~~-----~~~l~~L~~ 492 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM--------LT-EIPKNSLKDENEN-----FKNTYLLTS 492 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC--------CS-BCCSSSSEETTEE-----CTTGGGCCE
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC--------CC-CcCHHHhcccccc-----ccccCCccE
Confidence 66677777777777777776667777777777775332 22 2332221110000 000115689
Q ss_pred EecCCCCCCCcChhhh-cccccccccccccCCCCCcCChhhhcCCcccceeecc------cCccccccCcccCCCCCCCC
Q psy3330 344 LDLSGNNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIIN------ENMNLKQLPSKLFQGNTNLK 416 (608)
Q Consensus 344 L~ls~n~l~~~~~~~~-~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls------~N~~l~~lp~~~f~~l~~L~ 416 (608)
|++++|+++.++...+ ..+++|+.|+++. +.++.+ +..+..+++|++|+++ +|+..+.+|.. |..+++|+
T Consensus 493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~ 569 (636)
T 4eco_A 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLT 569 (636)
T ss_dssp EECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCC
T ss_pred EECcCCcCCccChhhhhccCCCcCEEECCC-CCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCC
Confidence 9999999998776554 5899999999998 788884 5667789999999994 56666788876 88899999
Q ss_pred EEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 417 SVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 417 ~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
.|+|++|+|+.||..+. ++|+.|++++||+.|
T Consensus 570 ~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 570 QLQIGSNDIRKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp EEECCSSCCCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred EEECCCCcCCccCHhHh--CcCCEEECcCCCCcc
Confidence 99999999999998866 799999999999998
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-38 Score=332.21 Aligned_cols=335 Identities=21% Similarity=0.271 Sum_probs=277.4
Q ss_pred EEEecCCCCccccCccC-ccccEEEeccCCCcccccc-cccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330 34 EASCTDAGLEVVPIQLN-PEVQTIILRENRISNVHYT-LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS 111 (608)
Q Consensus 34 ~v~C~~~~l~~ip~~~~-~~l~~L~L~~n~i~~l~~~-~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~ 111 (608)
.+.+........+..+. ++++.|+++++.++.+|.. +..+++|++|++++|.++.+++..|.++++|++|++++|.++
T Consensus 27 ~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 27 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106 (390)
T ss_dssp EECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC
Confidence 34444444333333332 6899999999999999874 688999999999999999999989999999999999999999
Q ss_pred CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330 112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191 (608)
Q Consensus 112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 191 (608)
.+++..|.++++|++|++++|+++.+++..|.++++|++|++++|.+..+. +..|..+++|++|++++|+++.++..
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-- 183 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVDLS-- 183 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBCCGG--
T ss_pred cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCccccc--
Confidence 999888999999999999999999998888899999999999999999887 77899999999999999999887643
Q ss_pred cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA 271 (608)
Q Consensus 192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~ 271 (608)
.+ ++++.|++++|.++++. . .++|+.|++++|.+..++.. ..++|+.|++++|++++.+ .+..+++
T Consensus 184 -~l--~~L~~L~l~~n~l~~~~-----~-~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~--~l~~l~~ 249 (390)
T 3o6n_A 184 -LI--PSLFHANVSYNLLSTLA-----I-PIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA--WLLNYPG 249 (390)
T ss_dssp -GC--TTCSEEECCSSCCSEEE-----C-CSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG--GGGGCTT
T ss_pred -cc--cccceeecccccccccC-----C-CCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH--HHcCCCC
Confidence 34 55899999999887653 2 56799999999999877432 3578999999999999874 6889999
Q ss_pred CCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCC
Q psy3330 272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF 351 (608)
Q Consensus 272 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l 351 (608)
|+.|++++|.++++.+..|..+++|+.|++ ++|++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---------------------------------------------~~n~l 284 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYI---------------------------------------------SNNRL 284 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEEC---------------------------------------------CSSCC
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEEC---------------------------------------------CCCcC
Confidence 999999999999988888888887766555 55655
Q ss_pred CCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCC
Q psy3330 352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS 431 (608)
Q Consensus 352 ~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~ 431 (608)
++++. .+..+++|++|++++|+ ++.+|.. +..+++|+.|+|++|+|+.++
T Consensus 285 ~~~~~--------------------------~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 285 VALNL--------------------------YGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp CEEEC--------------------------SSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCCCCCC--
T ss_pred cccCc--------------------------ccCCCCCCCEEECCCCc-ceecCcc-ccccCcCCEEECCCCccceeC--
Confidence 55431 12446889999999997 8889887 677899999999999999987
Q ss_pred CCCCCCCCEEEccCCccccccCChHHHHH
Q psy3330 432 HFPLERISFLDLSDNPLHCDCNLLWLWIL 460 (608)
Q Consensus 432 ~~~l~~L~~L~L~~N~~~CdC~~~~~~~~ 460 (608)
...+++|+.|++++|||.|+|...|+..|
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCNSLRALFRNV 363 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred chhhccCCEEEcCCCCccchhHHHHHHHH
Confidence 44678999999999999999876655443
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.6e-38 Score=344.28 Aligned_cols=388 Identities=21% Similarity=0.219 Sum_probs=283.8
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
-+.++.++..++.+|..+. +++++|++++|.++.+++..|.++++|++|+|++|.++.+.+.+|.++++|++|+|++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 3468889999999998765 37999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 212 (608)
+++.+.+..|.++++|++|++++|.++.+. +..|.++++|++|++++|++.+++...+..+ ++|+.|++++|.++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNNAIHYL 168 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSSCCCEE
T ss_pred cccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccCccccc
Confidence 999999999999999999999999999986 6789999999999999999999865555556 6799999999999998
Q ss_pred cCCCccccCCCcc--EEEccCCCCCccCcccccCC---------------------------------------------
Q psy3330 213 LDNSFPFTLTNLH--TLALSSNIISFINESSFVTL--------------------------------------------- 245 (608)
Q Consensus 213 ~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l--------------------------------------------- 245 (608)
.+..|.. +++|+ .|++++|.+.++.+..|...
T Consensus 169 ~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 169 SKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp CHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred Chhhhhh-hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 8777776 88888 78888888777665544321
Q ss_pred ------CccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCc
Q psy3330 246 ------RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLP 319 (608)
Q Consensus 246 ------~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp 319 (608)
.+|+.|++++|.++++++..|..+++|+.|++++|.++.+++ .+..+++|+.|+++++..-. ......+.+|
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~ 325 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN-LCQISASNFP 325 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSB-GGGGCGGGCT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCc-CchhhhhccC
Confidence 045666666666666666666667777777777776665543 35666667776665432111 0000000111
Q ss_pred hhhhcccccc-----cccc-CCCCCceecEEecCCCCCCCcC--hhhhcccccccccccccCCCCCcCChhhhcCCcccc
Q psy3330 320 PLLLSLSIPL-----AFSL-TPLGTLKCDRLDLSGNNFSNID--SVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE 391 (608)
Q Consensus 320 ~~~~~~~~~~-----~~~~-~~~~~~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~ 391 (608)
. +..+.+.. .... ......++++|++++|.++++. +..+..+++|+.|+++. +.+..+.+..|.++++|+
T Consensus 326 ~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 326 S-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp T-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS-CSCEEECTTTTTTCTTCS
T ss_pred c-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC-CcCCcCCHHHhcCCccCC
Confidence 0 00000000 0000 0011234677788888777766 66677777777777776 667777777777777788
Q ss_pred eeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCC-CCCCCCCEEEccCCcccc
Q psy3330 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASH-FPLERISFLDLSDNPLHC 450 (608)
Q Consensus 392 ~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~L~~N~~~C 450 (608)
+|++++|+..+..+...|.++++|+.|++++|.++.+++.. ..+++|++|++++|++..
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 88887776334445555777777888888888777655443 357777788888777754
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.6e-38 Score=348.98 Aligned_cols=245 Identities=26% Similarity=0.340 Sum_probs=199.0
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 133 (608)
+.++.++++++.+|..+. +++++|++++|+++.+++..|.++++|++|+|++|.++.+++.+|.++++|++|++++|+
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 568999999999998664 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL 213 (608)
Q Consensus 134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 213 (608)
++.+++..|.++++|++|++++|.+.+++ +..|+++++|++|++++|.+.++++..+..+ ++|++|++++|.+++..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNKIQALK 161 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSCCCCBC
T ss_pred cCccChhhhccCCCCCEEECCCCccCccC-hhHccccCCCCEEECCCCcccccCchhhccc--ccCCEEEccCCcccccC
Confidence 99998889999999999999999999987 7889999999999999999999988888888 66999999999999887
Q ss_pred CCCccc-cCCCccEEEccCCCCCccCcccccCC---------------------------CccCEEeccCCcCCCCChhh
Q psy3330 214 DNSFPF-TLTNLHTLALSSNIISFINESSFVTL---------------------------RTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 214 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l---------------------------~~L~~L~Ls~n~l~~l~~~~ 265 (608)
+..+.. .+++|+.|++++|.++++.+..|..+ ++|+.|++++|.++++++..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 665432 25788889998888887766655433 33455555555555555455
Q ss_pred hhCCCC--CCEEeccCCCCCccChhhhCCCCCCceeeccC
Q psy3330 266 LSKLSA--LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303 (608)
Q Consensus 266 ~~~l~~--L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~ 303 (608)
+.+++. |+.|++++|.++++.+..|..+++|+.|++++
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 555433 66666666666555555555555666655543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-37 Score=348.32 Aligned_cols=359 Identities=18% Similarity=0.231 Sum_probs=271.5
Q ss_pred cccccccCCCccEEEeeCCCCcc------------------cCccc-ccccccccEEEccCCCCCCCChhhhcCCCcCcE
Q psy3330 66 VHYTLSFYIELRSLDLSVNKINV------------------LGSHN-FEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126 (608)
Q Consensus 66 l~~~~~~~~~L~~L~Ls~n~l~~------------------i~~~~-f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 126 (608)
+|..++++++|++|+|++|.+++ +|+.. |.++++|++|+|++|++.+..|..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67778888888999999888888 55532 338888999999888877666678888888999
Q ss_pred eeccCCc-CCc-cChhhhC-------CCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCC
Q psy3330 127 LDLSYNK-ISV-INKTAFR-------DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197 (608)
Q Consensus 127 L~Ls~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~ 197 (608)
|+|++|+ +++ ..|..+. .+++|++|++++|.++.++....|.++++|+.|++++|++..+| .+..+ +
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L--~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN--V 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT--S
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC--C
Confidence 9998887 776 3344444 44588999999888886531127888889999999998888777 56777 5
Q ss_pred CceEEEccCCCCccccCCCccccCCC-ccEEEccCCCCCccCcccccCCC--ccCEEeccCCcCCCCChhh---hh--CC
Q psy3330 198 SLHYLYLNENLIETVLDNSFPFTLTN-LHTLALSSNIISFINESSFVTLR--TLHSLDLSNNNLSAIPTKQ---LS--KL 269 (608)
Q Consensus 198 ~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~---~~--~l 269 (608)
+|+.|++++|.++.+ +..+.. +++ |+.|++++|.++.+ |..+..++ +|+.|++++|++++.++.. +. .+
T Consensus 596 ~L~~L~Ls~N~l~~l-p~~l~~-l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEI-PEDFCA-FTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp EESEEECCSSCCSCC-CTTSCE-ECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred cceEEECcCCccccc-hHHHhh-ccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 588999999888844 445665 777 99999999988865 45665554 3889999999887754321 12 34
Q ss_pred CCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCC
Q psy3330 270 SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349 (608)
Q Consensus 270 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n 349 (608)
++|+.|++++|.++.++...+..+++|+.|+++++. +. .+|........+. .-...++++|+|++|
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~--------L~-~ip~~~~~~~~~~-----l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNL--------MT-SIPENSLKPKDGN-----YKNTYLLTTIDLRFN 738 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC--------CS-CCCTTSSSCTTSC-----CTTGGGCCEEECCSS
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc--------CC-ccChHHhcccccc-----ccccCCccEEECCCC
Confidence 588999999999998888777788899999986432 22 3333322111000 000115689999999
Q ss_pred CCCCcChhhh-cccccccccccccCCCCCcCChhhhcCCcccceeeccc------CccccccCcccCCCCCCCCEEEcCC
Q psy3330 350 NFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINE------NMNLKQLPSKLFQGNTNLKSVSLKG 422 (608)
Q Consensus 350 ~l~~~~~~~~-~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~------N~~l~~lp~~~f~~l~~L~~L~L~~ 422 (608)
+++.++...+ ..+++|+.|+++. +.++.+ +..+..+++|+.|+|++ |+..+.+|.. |.++++|+.|+|++
T Consensus 739 ~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 739 KLTSLSDDFRATTLPYLSNMDVSY-NCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGS 815 (876)
T ss_dssp CCCCCCGGGSTTTCTTCCEEECCS-SCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCS
T ss_pred CCccchHHhhhccCCCcCEEEeCC-CCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCC
Confidence 9998775544 4899999999998 788886 55677899999999977 6656777776 88999999999999
Q ss_pred CcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 423 NSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 423 N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
|+|+.||..+. ++|+.|+|++||+..
T Consensus 816 N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 816 NDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp SCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 99999999876 599999999999865
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.6e-38 Score=346.80 Aligned_cols=386 Identities=25% Similarity=0.248 Sum_probs=259.0
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
-+.++.+++.++.+|..+. +++++|++++|.++++++..|.++++|++|++++|.++.+++.+|.++++|++|+|++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3578999999999998664 88999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC-cccccCCCCCCceEEEccCCCCcc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP-NNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
.++.+.+..|+++++|++|++++|.+..++ +..|+++++|++|++++|.+.++. +..+..+ ++|++|++++|.+++
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSCCCE
T ss_pred cccccChhhcCCcccCCEEEccCCcccccc-ccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCccee
Confidence 999999999999999999999999999987 677999999999999999998754 5668888 669999999999988
Q ss_pred ccCCCccccCCCcc----EEEccCCCCCccCcc-----------------------------------------------
Q psy3330 212 VLDNSFPFTLTNLH----TLALSSNIISFINES----------------------------------------------- 240 (608)
Q Consensus 212 ~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~----------------------------------------------- 240 (608)
+.+..+.. +++|+ .|++++|.++.+.+.
T Consensus 168 ~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 168 ITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp ECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cChhhhhh-hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 77665543 32221 344444333322221
Q ss_pred -------------------------------------------------------cccCCCccCEEeccCCcCCCCCh--
Q psy3330 241 -------------------------------------------------------SFVTLRTLHSLDLSNNNLSAIPT-- 263 (608)
Q Consensus 241 -------------------------------------------------------~~~~l~~L~~L~Ls~n~l~~l~~-- 263 (608)
.+..+++|++|++++|+++.+|.
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~ 326 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCC
Confidence 23344556666666666655541
Q ss_pred -----------------hhhhCCCCCCEEeccCCCCCccC--hhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhc
Q psy3330 264 -----------------KQLSKLSALVNLDLSGNNFSNID--SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS 324 (608)
Q Consensus 264 -----------------~~~~~l~~L~~L~Ls~N~l~~~~--~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~ 324 (608)
..+..+++|+.|++++|.++++. +..+..+++|+.|+++++.. ..... ..+.++. +..
T Consensus 327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~-~~~~l~~-L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSA-NFMGLEE-LQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECC-CCTTCTT-CCE
T ss_pred CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchh-hccCCCC-CCe
Confidence 12445677888888888888774 67789999999999975431 11110 0000110 000
Q ss_pred ccc-----cccccc-CCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCc-CChhhhcCCcccceeeccc
Q psy3330 325 LSI-----PLAFSL-TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS-IDQRAFVDNIQLETVIINE 397 (608)
Q Consensus 325 ~~~-----~~~~~~-~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~-~~~~~f~~l~~L~~L~Ls~ 397 (608)
+.+ ...... ......++++|++++|.+++..+..+.++++|+.|+++. +.+.. +.+..|.++++|++|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCC
Confidence 000 000000 000112345555555555555555555555555555555 34433 3344555555566666655
Q ss_pred CccccccCcccCCCCCCCCEEEcCCCccccc-CCCCCCCCCCCEEEccCCccc
Q psy3330 398 NMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL-EASHFPLERISFLDLSDNPLH 449 (608)
Q Consensus 398 N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~L~~N~~~ 449 (608)
|+ +..+++..|.++++|+.|+|++|+++.+ |..+..+++|++|++++|++.
T Consensus 483 n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 483 CQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred Cc-CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 54 4444444455555666666666655544 333334555666666665554
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-37 Score=341.26 Aligned_cols=334 Identities=22% Similarity=0.271 Sum_probs=280.4
Q ss_pred eEEEecCCCCccccCccC-ccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330 33 LEASCTDAGLEVVPIQLN-PEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110 (608)
Q Consensus 33 ~~v~C~~~~l~~ip~~~~-~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i 110 (608)
..++|........+..+. .+++.+++++|.++.+|. .+..+++|++|+|++|.++.+++..|+.+++|++|+|++|.+
T Consensus 32 ~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 111 (597)
T 3oja_B 32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111 (597)
T ss_dssp CEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC
Confidence 345555544444444443 689999999999999987 468899999999999999999999999999999999999999
Q ss_pred CCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc
Q psy3330 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190 (608)
Q Consensus 111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 190 (608)
+.+++..|+++++|++|+|++|.++.+++..|.++++|++|++++|.+.++. +..|.++++|++|++++|.++.++..
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~- 189 (597)
T 3oja_B 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVDLS- 189 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSBCCGG-
T ss_pred CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCCcChh-
Confidence 9999999999999999999999999998888999999999999999999987 78899999999999999999988644
Q ss_pred ccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCC
Q psy3330 191 LSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS 270 (608)
Q Consensus 191 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~ 270 (608)
.+ ++|+.|++++|.++++. . ..+|+.|++++|.+..+.... .++|+.|++++|.+++. ..+..++
T Consensus 190 --~l--~~L~~L~l~~n~l~~l~-----~-~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~ 254 (597)
T 3oja_B 190 --LI--PSLFHANVSYNLLSTLA-----I-PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYP 254 (597)
T ss_dssp --GC--TTCSEEECCSSCCSEEE-----C-CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCT
T ss_pred --hh--hhhhhhhcccCcccccc-----C-CchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCC
Confidence 34 55999999999888653 2 568999999999998775433 36899999999999986 4688999
Q ss_pred CCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCC
Q psy3330 271 ALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN 350 (608)
Q Consensus 271 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~ 350 (608)
+|+.|+|++|.++++.+..|..+++|+.|++ ++|.
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L---------------------------------------------s~N~ 289 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYI---------------------------------------------SNNR 289 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEEC---------------------------------------------TTSC
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEEC---------------------------------------------CCCC
Confidence 9999999999999998888888887765555 5666
Q ss_pred CCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCC
Q psy3330 351 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430 (608)
Q Consensus 351 l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~ 430 (608)
+++++. .+..+++|+.|+|++|. +..+|.. +..+++|+.|+|++|.|+.++
T Consensus 290 l~~l~~--------------------------~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~l~~L~~L~L~~N~l~~~~- 340 (597)
T 3oja_B 290 LVALNL--------------------------YGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLK- 340 (597)
T ss_dssp CCEEEC--------------------------SSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCCCCCC-
T ss_pred CCCCCc--------------------------ccccCCCCcEEECCCCC-CCccCcc-cccCCCCCEEECCCCCCCCcC-
Confidence 665431 12346889999999997 8889887 678999999999999999887
Q ss_pred CCCCCCCCCEEEccCCccccccCChHHH
Q psy3330 431 SHFPLERISFLDLSDNPLHCDCNLLWLW 458 (608)
Q Consensus 431 ~~~~l~~L~~L~L~~N~~~CdC~~~~~~ 458 (608)
...+++|+.|++++|||.|+|...|+.
T Consensus 341 -~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred -hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 445789999999999999998665543
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-37 Score=341.41 Aligned_cols=383 Identities=19% Similarity=0.217 Sum_probs=315.2
Q ss_pred CCccccCccC--ccccEEEeccCCCcc------------------cccccc--cCCCccEEEeeCCCCcccCcccccccc
Q psy3330 41 GLEVVPIQLN--PEVQTIILRENRISN------------------VHYTLS--FYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 41 ~l~~ip~~~~--~~l~~L~L~~n~i~~------------------l~~~~~--~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
.++.+|..+. +++++|+|++|.+++ +|..++ ++++|++|++++|.+.+..+..|.+++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 4566787663 699999999999999 999988 999999999999998887778999999
Q ss_pred cccEEEccCCC-CCC-CChhhhcCC------CcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCchhhhcC
Q psy3330 99 KLLNLNISYNE-ISA-LSKDTFKGL------KELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDSEIFSS 169 (608)
Q Consensus 99 ~L~~L~Ls~n~-i~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 169 (608)
+|++|++++|+ +++ ..|..+..+ ++|++|++++|+++.++. ..|.++++|++|++++|.+.+.. | .|..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch-h-hhCC
Confidence 99999999998 886 445566665 999999999999997654 38999999999999999999544 5 7999
Q ss_pred CCCccEEEccCCCCCCCCcccccCCCCCC-ceEEEccCCCCccccCCCccc-cCCCccEEEccCCCCCccCccccc----
Q psy3330 170 LKSLRILKLDNNQILDVPNNVLSNLPHQS-LHYLYLNENLIETVLDNSFPF-TLTNLHTLALSSNIISFINESSFV---- 243 (608)
Q Consensus 170 l~~L~~L~L~~n~l~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~---- 243 (608)
+++|++|++++|+++.+|.. +..+ ++ |+.|++++|.++.++. .+.. .+++|+.|++++|.+++..|..|.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~-l~~l--~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPAN-FCGF--TEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEESEEECCSSEEEECCTT-SEEE--CTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCEEECCCCccccccHh-hhhh--cccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 99999999999999988765 5566 56 9999999999996654 4443 134899999999999998888887
Q ss_pred ---CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCC-------CCceeeccCCCCCCCCCcc
Q psy3330 244 ---TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF-------SLKLVKINLIPNLDSIDQP 313 (608)
Q Consensus 244 ---~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~-------~L~~L~l~~~~~l~~~~~~ 313 (608)
.+++|++|++++|+++++|+..+..+++|+.|++++|+++.+++..+.... +|+.|+++++ .
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--------~ 499 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN--------K 499 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS--------C
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC--------c
Confidence 788999999999999999998888999999999999999988877665543 9999999643 2
Q ss_pred cccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccccc-----CCCCCcCChhhhcCCc
Q psy3330 314 LSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINL-----IPNLDSIDQRAFVDNI 388 (608)
Q Consensus 314 ~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~-----~~~l~~~~~~~f~~l~ 388 (608)
+. .+|..+.. ....++++|++++|+++++ |..+.++++|+.|++++ .+++....+..|.+++
T Consensus 500 l~-~lp~~~~~-----------~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 500 LT-KLSDDFRA-----------TTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CC-BCCGGGST-----------TTCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CC-ccChhhhh-----------ccCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 22 34443320 0122568999999999995 56777899999999954 3567777788999999
Q ss_pred ccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-C--CCCCCEEEccCCccccccCC
Q psy3330 389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P--LERISFLDLSDNPLHCDCNL 454 (608)
Q Consensus 389 ~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~--l~~L~~L~L~~N~~~CdC~~ 454 (608)
+|++|++++|+ ++.+|...+ ++|+.|+|++|.+..++...+ + ......+....+...++|+.
T Consensus 567 ~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 567 SLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp SCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence 99999999998 799998743 899999999999998875544 1 23455666666777778864
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.4e-37 Score=343.38 Aligned_cols=381 Identities=19% Similarity=0.204 Sum_probs=308.2
Q ss_pred CCccccCccC--ccccEEEeccCCCcc------------------cccccc--cCCCccEEEeeCCCCcccCcccccccc
Q psy3330 41 GLEVVPIQLN--PEVQTIILRENRISN------------------VHYTLS--FYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 41 ~l~~ip~~~~--~~l~~L~L~~n~i~~------------------l~~~~~--~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
.++.+|..+. +++++|+|++|.+++ +|..++ ++++|++|+|++|++.+..+..|.+++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 3445776654 689999999999998 898877 999999999999998876678899999
Q ss_pred cccEEEccCCC-CCC-CChhhhcCC-------CcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCchhhhc
Q psy3330 99 KLLNLNISYNE-ISA-LSKDTFKGL-------KELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDSEIFS 168 (608)
Q Consensus 99 ~L~~L~Ls~n~-i~~-~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 168 (608)
+|++|+|++|+ +++ ..|..+..+ ++|++|+|++|+++.++. ..|.++++|+.|++++|.+..+ | .|.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--p-~~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--E-AFG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC--C-CCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc--h-hhc
Confidence 99999999998 886 334445544 599999999999997754 4899999999999999999955 4 799
Q ss_pred CCCCccEEEccCCCCCCCCcccccCCCCCC-ceEEEccCCCCccccCCCccccC--CCccEEEccCCCCCccCcccc---
Q psy3330 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQS-LHYLYLNENLIETVLDNSFPFTL--TNLHTLALSSNIISFINESSF--- 242 (608)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~--- 242 (608)
.+++|+.|++++|++..+|.. +..+ ++ |+.|++++|.++.++ ..+.. + ++|+.|++++|.+.+..+...
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~-l~~l--~~~L~~L~Ls~N~L~~lp-~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPED-FCAF--TDQVEGLGFSHNKLKYIP-NIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTT-SCEE--CTTCCEEECCSSCCCSCC-SCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CCCcceEEECcCCccccchHH-Hhhc--cccCCEEECcCCCCCcCc-hhhhc-cccCCCCEEECcCCcCCCccccchhhh
Confidence 999999999999999977765 5555 55 999999999999664 45543 4 349999999999987654322
Q ss_pred c--CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCC-------CCCceeeccCCCCCCCCCcc
Q psy3330 243 V--TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL-------FSLKLVKINLIPNLDSIDQP 313 (608)
Q Consensus 243 ~--~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l-------~~L~~L~l~~~~~l~~~~~~ 313 (608)
. .+++|+.|++++|+++.+|...+..+++|+.|+|++|+++.++...+... ++|+.|+++++.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-------- 739 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-------- 739 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC--------
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC--------
Confidence 2 34589999999999999998888899999999999999998887766544 389999997542
Q ss_pred cccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccccc-----CCCCCcCChhhhcCCc
Q psy3330 314 LSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINL-----IPNLDSIDQRAFVDNI 388 (608)
Q Consensus 314 ~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~-----~~~l~~~~~~~f~~l~ 388 (608)
+. .+|..+.. ....+++.|++++|+++++ +..+.++++|+.|+++. .+++....+..|.+++
T Consensus 740 L~-~lp~~l~~-----------~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 740 LT-SLSDDFRA-----------TTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CC-CCCGGGST-----------TTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred Cc-cchHHhhh-----------ccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 22 34443320 0122568999999999996 55677999999999975 2566777788999999
Q ss_pred ccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCcccc--ccCC
Q psy3330 389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC--DCNL 454 (608)
Q Consensus 389 ~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~C--dC~~ 454 (608)
+|++|+|++|+ ++.+|...+ ++|+.|||++|.+..++...+ +...+..+.|.+|++.+ +|+.
T Consensus 807 ~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 807 SLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp SCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 99999999998 799999843 699999999999998876555 33455667788888766 8874
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=331.50 Aligned_cols=367 Identities=20% Similarity=0.180 Sum_probs=273.1
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 133 (608)
++|++++|.++.+|..+. ++|++|++++|.++++++..|.++++|++|+|++|+++++.+.+|.++++|++|+|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 689999999999998766 899999999999999999999999999999999999999988999999999999999999
Q ss_pred CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCc--eEEEccCCCC--
Q psy3330 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL--HYLYLNENLI-- 209 (608)
Q Consensus 134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L--~~L~L~~n~l-- 209 (608)
++.++.. .+++|++|++++|.++++..|..|+++++|++|++++|.+.. ..+..+ +++ +.|++++|.+
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l--~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI--AHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG--TTSCEEEEEEEECTTTT
T ss_pred eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccc--ccceeeEEEeecccccc
Confidence 9988655 799999999999999986547889999999999999999876 345555 446 9999999998
Q ss_pred ccccCCCccc-------------------------cCCCccEEEccCCC-------CCccCcccccC-------------
Q psy3330 210 ETVLDNSFPF-------------------------TLTNLHTLALSSNI-------ISFINESSFVT------------- 244 (608)
Q Consensus 210 ~~~~~~~~~~-------------------------~l~~L~~L~L~~n~-------l~~~~~~~~~~------------- 244 (608)
.+..+..+.. .+++|+.+++++|. +.+..+ .+.+
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 5555544433 14556666666664 111111 1111
Q ss_pred --------------CCccCEEeccCCcCC-CCChhhh-----hCCCCCCEEeccCCCCCccChhhhCCC---CCCceeec
Q psy3330 245 --------------LRTLHSLDLSNNNLS-AIPTKQL-----SKLSALVNLDLSGNNFSNIDSVAFKSL---FSLKLVKI 301 (608)
Q Consensus 245 --------------l~~L~~L~Ls~n~l~-~l~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~f~~l---~~L~~L~l 301 (608)
.++|++|++++|+++ .+|. .+ ..+++|+.+++++|.+ .++...+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF-RDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC-CCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCcccc-chhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence 237888888888887 4554 44 6777777777777777 4443222222 23444444
Q ss_pred cCCCCCCC--------------CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcCh--hhhcccccc
Q psy3330 302 NLIPNLDS--------------IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS--VAFKSLFSL 365 (608)
Q Consensus 302 ~~~~~l~~--------------~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~--~~~~~l~~L 365 (608)
+++..... ..+.+.+.+|..+. ...++++|++++|++++++. ..+..+++|
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG-------------HLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-------------CCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhc-------------cCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 33221000 01222222222111 12256889999999988554 668888899
Q ss_pred cccccccCCCCCc-CChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEcc
Q psy3330 366 KLVKINLIPNLDS-IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLS 444 (608)
Q Consensus 366 ~~l~l~~~~~l~~-~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~ 444 (608)
+.|+++. +.+.. ++...|..+++|++|++++|+..+.+|.. +. ++|+.|+|++|+|+.+|..++.+++|++|+++
T Consensus 377 ~~L~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 377 QQLDISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CEEECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCcccccchhhhcCCCCCEEECC
Confidence 9999987 77776 77677888889999999998844556554 32 78999999999999999888889999999999
Q ss_pred CCcccc
Q psy3330 445 DNPLHC 450 (608)
Q Consensus 445 ~N~~~C 450 (608)
+|++..
T Consensus 453 ~N~l~~ 458 (520)
T 2z7x_B 453 SNQLKS 458 (520)
T ss_dssp SSCCCC
T ss_pred CCcCCc
Confidence 999983
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-37 Score=333.32 Aligned_cols=369 Identities=18% Similarity=0.201 Sum_probs=264.5
Q ss_pred EEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcC
Q psy3330 55 TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134 (608)
Q Consensus 55 ~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 134 (608)
..+.+++.++.+|..+. ++|++|++++|+++++++..|.++++|++|++++|+++.+++++|.++++|++|++++|++
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 36788899999998664 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330 135 SVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENLIETVL 213 (608)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 213 (608)
+++++..|+++++|++|++++|.++.+..+..|+++++|++|++++|. +..+++..+..+ ++|++|++++|.+++..
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL--TSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEEC
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc--cccCeeeccCCcccccC
Confidence 999999999999999999999999976546789999999999999998 777887788888 56999999999999988
Q ss_pred CCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC---hhhh------------------------
Q psy3330 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP---TKQL------------------------ 266 (608)
Q Consensus 214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~------------------------ 266 (608)
+..+.. +++|+.|++++|.+..+....+..+++|++|++++|++++++ ....
T Consensus 165 ~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 165 SQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp TTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred hhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 888876 777888887777776654444456677777777777776642 0001
Q ss_pred ----h-----------------------------------------------------------CCCCCCEEeccCCCCC
Q psy3330 267 ----S-----------------------------------------------------------KLSALVNLDLSGNNFS 283 (608)
Q Consensus 267 ----~-----------------------------------------------------------~l~~L~~L~Ls~N~l~ 283 (608)
. ..++|+.|++++|.++
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 1 1234445555555555
Q ss_pred ccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcCh--hhhcc
Q psy3330 284 NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS--VAFKS 361 (608)
Q Consensus 284 ~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~--~~~~~ 361 (608)
.++...+..+++|+.|+++++. +.+.+|..... .....++++|++++|+++++++ ..+..
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENL--------MVEEYLKNSAC----------KGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSC--------CCHHHHHHHTC----------TTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred cCCHHHHhcCccccEEEccCCc--------cccccccchhh----------hhccccCcEEEccCCcccccccchhhhhc
Confidence 4444444455666666664322 22211111000 0011245777777777777654 45677
Q ss_pred cccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccC-----------------CCCCCCCEEEcCCCc
Q psy3330 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF-----------------QGNTNLKSVSLKGNS 424 (608)
Q Consensus 362 l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f-----------------~~l~~L~~L~L~~N~ 424 (608)
+++|+.|+++. ++++.++ ..+..+++|++|++++|+ ++.+|...+ .++++|++|+|++|+
T Consensus 386 l~~L~~L~Ls~-N~l~~lp-~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 386 LKNLTSLDISR-NTFHPMP-DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 462 (549)
T ss_dssp CTTCCEEECTT-CCCCCCC-SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CCCccCC-hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc
Confidence 77777777776 5666543 345556667777777765 555554321 245666666666666
Q ss_pred ccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 425 LSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 425 l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
|+.||.. ..+++|++|+|++|++..
T Consensus 463 l~~ip~~-~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 463 LKTLPDA-SLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp CSSCCCG-GGCTTCCEEECCSSCCCC
T ss_pred cCcCCCc-ccCccCCEEecCCCccCC
Confidence 6666652 345666777777776664
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=318.37 Aligned_cols=305 Identities=21% Similarity=0.311 Sum_probs=191.6
Q ss_pred ccccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccc
Q psy3330 16 KLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNF 94 (608)
Q Consensus 16 ~~~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f 94 (608)
...+..|+..|.|.... .++|++.+++++|..+++++++|++++|.++.++. .+.++++|++|++++|+++++++..|
T Consensus 18 ~~~~~~~~~~~~C~~~~-~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 18 SKEESSNQASLSCDRNG-ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp ---------CCEECTTS-EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cCccCCCccCCCCCCCe-EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 34556788889997543 48999999999999888888888777777777665 56666666666666666666666566
Q ss_pred cccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330 95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174 (608)
Q Consensus 95 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 174 (608)
.++++|++|++++|.++.+++..|.++++|++|++++|+++.++. ...|..+++|+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~~~~~~l~~L~ 152 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE------------------------TSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS------------------------SCSCTTCTTCC
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc------------------------hhhhccCCCCc
Confidence 666666666666666666555555555555555555555554433 02344444444
Q ss_pred EEEccCC-CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330 175 ILKLDNN-QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253 (608)
Q Consensus 175 ~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 253 (608)
+|++++| .+..+++ ..|.. +++|+.|++++|.++++.+..+..+++|++|++
T Consensus 153 ~L~l~~n~~~~~~~~--------------------------~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 153 ILRVGNMDTFTKIQR--------------------------KDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp EEEEEESSSCCEECT--------------------------TTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EEECCCCccccccCH--------------------------HHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 4444443 1222222 22222 444555555555555555556666777777777
Q ss_pred cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC---CCCCceeeccCCCCCCCCCcccccCCchhhhccccccc
Q psy3330 254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS---LFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLA 330 (608)
Q Consensus 254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~---l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~ 330 (608)
++|+++.++...+..+++|+.|++++|.+++.....+.. ...+
T Consensus 206 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l---------------------------------- 251 (353)
T 2z80_A 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI---------------------------------- 251 (353)
T ss_dssp ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC----------------------------------
T ss_pred CCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh----------------------------------
Confidence 777777777666667788888888888777655332211 1111
Q ss_pred cccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCC
Q psy3330 331 FSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410 (608)
Q Consensus 331 ~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~ 410 (608)
+.+++++ +.++++. +..+|.. |.
T Consensus 252 -----------~~l~L~~--------------------------------------------~~l~~~~-l~~l~~~-l~ 274 (353)
T 2z80_A 252 -----------KKFTFRN--------------------------------------------VKITDES-LFQVMKL-LN 274 (353)
T ss_dssp -----------CEEEEES--------------------------------------------CBCCHHH-HHHHHHH-HH
T ss_pred -----------hcccccc--------------------------------------------ccccCcc-hhhhHHH-Hh
Confidence 1222222 2233333 4456654 77
Q ss_pred CCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330 411 GNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL 463 (608)
Q Consensus 411 ~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~ 463 (608)
.+++|+.|+|++|+++.+|..++ .+++|++|++++|||.|+|+ +.|+..|.+.
T Consensus 275 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred cccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 88999999999999999999875 78999999999999999996 8899999874
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.8e-35 Score=311.78 Aligned_cols=344 Identities=27% Similarity=0.387 Sum_probs=275.2
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
+++++|+++++.++.++. +..+++|++|++++|.++.+++ |.++++|++|++++|.++.+++ +.++++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 578888888888888764 7778888888888888888876 7888888888888888888775 8888888888888
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
+|.++.+++ +.++++|++|++++|.+..+. .+..+++|++|+++ |.+..+++ +..+ ++|+.|++++|.++
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~-~~~~~~~~--~~~l--~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFG-NQVTDLKP--LANL--TTLERLDISSNKVS 190 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEE-ESCCCCGG--GTTC--TTCCEEECCSSCCC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecC-CcccCchh--hccC--CCCCEEECcCCcCC
Confidence 888888754 788888888888888887763 37888888888886 45555443 5666 55888888888887
Q ss_pred cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290 (608)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f 290 (608)
++. .+.. +++|+.|++++|.+.++.+ +..+++|++|++++|++++++ .+..+++|+.|++++|.++++.+ +
T Consensus 191 ~~~--~l~~-l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 191 DIS--VLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCG--GGGG-CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCh--hhcc-CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchh--h
Confidence 764 3555 8888888888888887654 667888888888888888874 57888888889998888888765 7
Q ss_pred CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370 (608)
Q Consensus 291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l 370 (608)
..+++|+.|+++++. +.+ +++ +. ...++++|++++|+++++++ +..+++|+.|++
T Consensus 262 ~~l~~L~~L~l~~n~--------l~~-~~~-~~-------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 262 SGLTKLTELKLGANQ--------ISN-ISP-LA-------------GLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCTTCSEEECCSSC--------CCC-CGG-GT-------------TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred hcCCCCCEEECCCCc--------cCc-ccc-cc-------------CCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 888888888886432 111 111 10 11245889999999998876 788999999999
Q ss_pred ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
+. +.+..+.+ +..+++|++|++++|+ +..++. +..+++|+.|++++|+++.+++ +..+++|+.|++++|+|.+
T Consensus 317 ~~-n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 317 YF-NNISDISP--VSSLTKLQRLFFYNNK-VSDVSS--LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CS-SCCSCCGG--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred cC-CcCCCchh--hccCccCCEeECCCCc-cCCchh--hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 88 67777655 7789999999999997 777753 8899999999999999998876 6788999999999999987
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-35 Score=323.29 Aligned_cols=363 Identities=20% Similarity=0.216 Sum_probs=279.5
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
.+++++++|.++.+|..+. ++|++|++++|.++.+++..|.++++|++|+|++|+++.+++++|.++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3889999999999998664 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC--c
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI--E 210 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l--~ 210 (608)
+++.++.. .+++|++|++++|.+++++.+..|+++++|++|++++|++.... +..++.-.|+.|++++|.+ +
T Consensus 111 ~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccccc
Confidence 99988765 79999999999999998764688999999999999999988643 3344221249999999999 6
Q ss_pred cccCCCccc-------------------------cCCCccEEEccCCCCC------------------------------
Q psy3330 211 TVLDNSFPF-------------------------TLTNLHTLALSSNIIS------------------------------ 235 (608)
Q Consensus 211 ~~~~~~~~~-------------------------~l~~L~~L~L~~n~l~------------------------------ 235 (608)
+..+..+.. .+++|+.+++++|...
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 666665554 1335566666665310
Q ss_pred ---ccCcccccCCCccCEEeccCCcCC-CCChhhh----hCC--------------------------CCCCEEeccCCC
Q psy3330 236 ---FINESSFVTLRTLHSLDLSNNNLS-AIPTKQL----SKL--------------------------SALVNLDLSGNN 281 (608)
Q Consensus 236 ---~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~----~~l--------------------------~~L~~L~Ls~N~ 281 (608)
++.+ ....++|++|++++|.++ .+|...+ ..+ .+|+.|++++|.
T Consensus 265 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 265 CSVKLFQ--FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHH--HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHH--hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 0000 011247889999999988 4554322 233 346666666666
Q ss_pred CCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcCh--hhh
Q psy3330 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS--VAF 359 (608)
Q Consensus 282 l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~--~~~ 359 (608)
+..... ...+++|+.|+++++ .+.+..|..+. ...++++|++++|++++++. ..|
T Consensus 343 ~~~~~~--~~~l~~L~~L~l~~n--------~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 343 FIHMVC--PPSPSSFTFLNFTQN--------VFTDSVFQGCS-------------TLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp CCCCCC--CSSCCCCCEEECCSS--------CCCTTTTTTCC-------------SCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred cccccC--ccCCCCceEEECCCC--------ccccchhhhhc-------------ccCCCCEEECCCCCcCCcccchhhh
Confidence 544331 256777888887532 23332332221 12256899999999999775 568
Q ss_pred cccccccccccccCCCCCc-CChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCC
Q psy3330 360 KSLFSLKLVKINLIPNLDS-IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI 438 (608)
Q Consensus 360 ~~l~~L~~l~l~~~~~l~~-~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 438 (608)
.++++|+.|+++. +.++. ++...|.++++|++|++++|++.+.+|.. +. ++|+.|+|++|+|+.||++++.+++|
T Consensus 400 ~~l~~L~~L~l~~-N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 400 KNMSSLETLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIMSIPKDVTHLQAL 475 (562)
T ss_dssp TTCTTCCEEECTT-SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCCCCCTTTTSSCCC
T ss_pred cCCCCCCEEECCC-CcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCcccChhhcCCCCC
Confidence 8999999999998 77777 77788999999999999999844555543 22 79999999999999999999999999
Q ss_pred CEEEccCCccccccC
Q psy3330 439 SFLDLSDNPLHCDCN 453 (608)
Q Consensus 439 ~~L~L~~N~~~CdC~ 453 (608)
++|++++|.+. ..+
T Consensus 476 ~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 476 QELNVASNQLK-SVP 489 (562)
T ss_dssp SEEECCSSCCC-CCC
T ss_pred CEEECCCCCCC-CCC
Confidence 99999999998 444
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.5e-36 Score=317.84 Aligned_cols=356 Identities=23% Similarity=0.300 Sum_probs=284.8
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC-CCChhhhcCCCcCcEeeccCC
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n 132 (608)
+.++.+++.++.+|. + .++|++|+|++|.++++++..|.++++|++|++++|.+. .+++.+|.++++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 457788888999887 3 378999999999999998889999999999999999987 677788999999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccC-chhhhcCCCCccEEEccCCCCCCCCccc-ccCCCCCCceEEEccCCCCc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFE-DSEIFSSLKSLRILKLDNNQILDVPNNV-LSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~L~~n~l~ 210 (608)
+++.+.+..|.++++|++|++++|.+++.. ....|..+++|++|++++|.+.++.+.. +..+ ++|++|++++|.++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM--RRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC--TTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC--CcccEEeCCCCccc
Confidence 999998999999999999999999998743 1334889999999999999998886554 6777 55899999999888
Q ss_pred cccCCCccccC--CCccEEEccCCCCCccCcccc--------cCCCccCEEeccCCcCCCCChhhhhCC---CCCCEEec
Q psy3330 211 TVLDNSFPFTL--TNLHTLALSSNIISFINESSF--------VTLRTLHSLDLSNNNLSAIPTKQLSKL---SALVNLDL 277 (608)
Q Consensus 211 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~l~~~~~~~l---~~L~~L~L 277 (608)
+..+..+.. + .+++.|++++|.+..+.+..+ ..+++|++|++++|++++..+..+... ++|+.|++
T Consensus 168 ~~~~~~l~~-l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGG-GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccChhhhhc-cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 887777664 4 578888888888877655432 245677788888887776555554443 67777777
Q ss_pred cCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChh
Q psy3330 278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357 (608)
Q Consensus 278 s~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~ 357 (608)
++|.+.+.... ...+..+... .+......++++|++++|+++++.+.
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~--------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 247 SNSYNMGSSFG-HTNFKDPDNF--------------------------------TFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp TTCTTTSCCTT-CCSSCCCCTT--------------------------------TTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred ccccccccccc-hhhhccCccc--------------------------------ccccccccCceEEEecCccccccchh
Confidence 77765543211 1111111100 00011123568999999999999999
Q ss_pred hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCC-CCCCCC
Q psy3330 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA-SHFPLE 436 (608)
Q Consensus 358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~l~ 436 (608)
.|..+++|+.|+++. +.++.+.+..|.++++|++|++++|+ ++.++...|.++++|++|+|++|+++.+++ .+..++
T Consensus 294 ~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hcccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 999999999999998 88999999999999999999999997 888887779999999999999999998854 455799
Q ss_pred CCCEEEccCCcccc
Q psy3330 437 RISFLDLSDNPLHC 450 (608)
Q Consensus 437 ~L~~L~L~~N~~~C 450 (608)
+|++|++++|++..
T Consensus 372 ~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 372 NLKELALDTNQLKS 385 (455)
T ss_dssp TCCEEECCSSCCSC
T ss_pred cccEEECCCCcccc
Confidence 99999999999985
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6e-35 Score=296.67 Aligned_cols=260 Identities=30% Similarity=0.435 Sum_probs=223.9
Q ss_pred cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccc
Q psy3330 19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQ 97 (608)
Q Consensus 19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l 97 (608)
...||..|.|. ...++|++.+++.+|..+++++++|++++|.++.++. .+.++++|++|++++|.++.+.+..|.++
T Consensus 22 ~~~cp~~c~c~--l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 22 GPVCPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp CCCCCTTCEEE--TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred cCCCCCCCcCC--CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 46799999995 4589999999999999999999999999999999886 78999999999999999999988899999
Q ss_pred ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCc--cCchhhhcCCCCccE
Q psy3330 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY--FEDSEIFSSLKSLRI 175 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~ 175 (608)
++|++|++++|.++.++...+ ++|++|++++|.++.+++..|.++++|++|++++|.+.. .. +..|.++++|++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCE
T ss_pred CCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCE
Confidence 999999999999998886543 789999999999999999999999999999999999974 44 677899999999
Q ss_pred EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255 (608)
Q Consensus 176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 255 (608)
|++++|+++.++...+ ++|+.|++++|.++++.+..|.. +++|+.|++++|.++++.+..|..+++|++|++++
T Consensus 176 L~l~~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 176 IRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp EECCSSCCCSCCSSCC-----TTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred EECCCCccccCCcccc-----ccCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 9999999998876532 45888888888888877777776 78888888888888887777777888888888888
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330 256 NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291 (608)
Q Consensus 256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~ 291 (608)
|+++.+|. .+..+++|+.|++++|+++++++.+|.
T Consensus 250 N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 250 NKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp SCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CcCccCCh-hhccCCCcCEEECCCCcCCccChhhcC
Confidence 88887774 577778888888888888877776654
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=324.24 Aligned_cols=386 Identities=23% Similarity=0.285 Sum_probs=278.9
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
.+.++.++..++.+|..+. +++++|++++|+++.+++..|.++++|++|+|++|+++.+++++|.++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 4567888888999997653 57999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC-cccccCCCCCCceEEEccCCCCcc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP-NNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
.++.+++..|.++++|++|++++|.++.++ +..|+++++|++|++++|.+..+. +..+..+ ++|++|++++|.+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTSCCCE
T ss_pred cCCccCHhhhcCccccccccccccccccCC-CccccccccccEEecCCCccceecChhhhccc--CCCCEEeCcCCccce
Confidence 999999999999999999999999999987 556999999999999999999854 5667888 669999999999999
Q ss_pred ccCCCccccCCCc----cEEEccCCCCCccCccccc--------------------------------------------
Q psy3330 212 VLDNSFPFTLTNL----HTLALSSNIISFINESSFV-------------------------------------------- 243 (608)
Q Consensus 212 ~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~-------------------------------------------- 243 (608)
+.+..+.. +++| +.+++++|.+..+.+..|.
T Consensus 164 ~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 164 IYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp ECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred ecHHHccc-hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 88877776 7777 7888888887766554443
Q ss_pred -------------------------------------CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC
Q psy3330 244 -------------------------------------TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID 286 (608)
Q Consensus 244 -------------------------------------~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 286 (608)
.+++|++|++++|.++++|. .+..+ +|+.|++++|.++.++
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~-~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNF-GWQHLELVNCKFGQFP 320 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-CCSCC-CCSEEEEESCBCSSCC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh-hhccC-CccEEeeccCcccccC
Confidence 34555666666666665553 34444 6666666666665444
Q ss_pred hhhhCCCCCCceeeccCCCCCCCC--------------CcccccC--Cchhhhccc------ccc--cccc--CCCCCce
Q psy3330 287 SVAFKSLFSLKLVKINLIPNLDSI--------------DQPLSLS--LPPLLLSLS------IPL--AFSL--TPLGTLK 340 (608)
Q Consensus 287 ~~~f~~l~~L~~L~l~~~~~l~~~--------------~~~~~~~--lp~~~~~~~------~~~--~~~~--~~~~~~~ 340 (608)
. ..+++|+.|+++++...... .+...+. .|..+..++ +.. .... ......+
T Consensus 321 ~---~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~ 397 (570)
T 2z63_A 321 T---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397 (570)
T ss_dssp B---CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred c---ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCC
Confidence 3 23444455544332211000 0111100 011111110 000 0000 0011224
Q ss_pred ecEEecCCCCCCCcCh-hhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccc-cccCcccCCCCCCCCEE
Q psy3330 341 CDRLDLSGNNFSNIDS-VAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL-KQLPSKLFQGNTNLKSV 418 (608)
Q Consensus 341 l~~L~ls~n~l~~~~~-~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l-~~lp~~~f~~l~~L~~L 418 (608)
+++|++++|.+++.++ ..+.++++|+.|+++. +.+..+.+..|.++++|++|++++|+.. +.+|.. |..+++|+.|
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L 475 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFL 475 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTT-SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEE
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcC-CcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEE
Confidence 5777777777777655 5677788888888877 6677777777888888888888888733 356654 7888888888
Q ss_pred EcCCCcccccC-CCCCCCCCCCEEEccCCccccc
Q psy3330 419 SLKGNSLSHLE-ASHFPLERISFLDLSDNPLHCD 451 (608)
Q Consensus 419 ~L~~N~l~~l~-~~~~~l~~L~~L~L~~N~~~Cd 451 (608)
+|++|+++.++ ..+..+++|++|++++|++..-
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 88888888774 4445678888888888887653
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.4e-35 Score=296.69 Aligned_cols=261 Identities=28% Similarity=0.424 Sum_probs=216.8
Q ss_pred ccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccc
Q psy3330 18 NKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEY 96 (608)
Q Consensus 18 ~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~ 96 (608)
....||..|.|. ...++|++.+++.+|..+++++++|++++|.++.+++ .+.++++|++|++++|+++.+.+..|.+
T Consensus 23 ~~~~cp~~c~c~--l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 23 YSAMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp --CCCCSSCEEE--TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred ccCCCCCCCccc--CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence 356799999995 4689999999999999999999999999999999865 7899999999999999999998889999
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCc--cCchhhhcCCCCcc
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY--FEDSEIFSSLKSLR 174 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~ 174 (608)
+++|++|++++|.++.++...+ ++|++|++++|+++.+++..|.++++|++|++++|.++. .. +..|..+ +|+
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l-~L~ 175 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-PGAFDGL-KLN 175 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC-TTSSCSC-CCS
T ss_pred cCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC-cccccCC-ccC
Confidence 9999999999999998886544 789999999999999988889999999999999999864 44 6677777 899
Q ss_pred EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEecc
Q psy3330 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254 (608)
Q Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 254 (608)
.|++++|+++.++.... ++|+.|++++|.++++.+..+.. +++|+.|++++|.++++.+..|..+++|++|+++
T Consensus 176 ~L~l~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCBCCSSBCSSCCSSSC-----SSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred EEECcCCCCCccCcccc-----CCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 99999999888776432 45778888888888777777776 7778888888887777777777777778888888
Q ss_pred CCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC
Q psy3330 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS 292 (608)
Q Consensus 255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~ 292 (608)
+|+++.+|. .+..+++|+.|++++|+++++++..|..
T Consensus 250 ~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 250 NNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp SSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccc
Confidence 777777764 4677777777777777777776665543
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=5.1e-35 Score=293.93 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=130.3
Q ss_pred CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL 100 (608)
Q Consensus 22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L 100 (608)
||..|.|.. ..++|++.+++++|..+++++++|++++|.++.++. .+.++++|++|++++|.++.+..
T Consensus 1 CP~~C~C~~--~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--------- 69 (306)
T 2z66_A 1 CPSRCSCSG--TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC--------- 69 (306)
T ss_dssp CCTTCEEET--TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---------
T ss_pred CcCCCeeCC--CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC---------
Confidence 999999964 589999999999999888888777777777766664 34556666666666665554320
Q ss_pred cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180 (608)
Q Consensus 101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 180 (608)
.+..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+........+..+++|++|++++
T Consensus 70 -------------~~~~~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 70 -------------CSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp -------------EEHHHHSCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred -------------cccccccccccCEEECCCCccccCh-hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 0122333444444444444444332 22444445555555555444443113344444555555544
Q ss_pred CCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCc-cCcccccCCCccCEEeccCCcCC
Q psy3330 181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF-INESSFVTLRTLHSLDLSNNNLS 259 (608)
Q Consensus 181 n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~ 259 (608)
|.+..+.+ ..+.. +++|++|++++|.+.+ ..+..+..+++|++|++++|+++
T Consensus 136 n~l~~~~~--------------------------~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 136 THTRVAFN--------------------------GIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp SCCEECST--------------------------TTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CcCCccch--------------------------hhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 44433332 22332 4455555555555544 33456667778888888888888
Q ss_pred CCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330 260 AIPTKQLSKLSALVNLDLSGNNFSNIDSV 288 (608)
Q Consensus 260 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 288 (608)
++++..+..+++|+.|++++|+++++++.
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 87777788888888888888887765543
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-34 Score=319.09 Aligned_cols=389 Identities=22% Similarity=0.262 Sum_probs=286.7
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 133 (608)
++.+-++-.++.+|..+. +++++|||++|+|+.+++.+|.++++|++|+|++|+|+.+++++|.++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 345677778899997653 579999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC-cccccCCCCCCceEEEccCCCCccc
Q psy3330 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP-NNVLSNLPHQSLHYLYLNENLIETV 212 (608)
Q Consensus 134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~~ 212 (608)
++.+++..|.++++|++|++++|++++++ +..|+++++|++|++++|.+..++ +..+..+ ++|++|++++|.++++
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccc--hhhhhhcccCcccccc
Confidence 99999999999999999999999999987 778999999999999999998765 4556677 5699999999999998
Q ss_pred cCCCccccCCC----ccEEEccCCCCCccCcccccCC-------------------------------------------
Q psy3330 213 LDNSFPFTLTN----LHTLALSSNIISFINESSFVTL------------------------------------------- 245 (608)
Q Consensus 213 ~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~l------------------------------------------- 245 (608)
.+..+.. +.+ ...++++.|.+..+.+..+...
T Consensus 189 ~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccc-hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 8777654 333 3356677776655443322211
Q ss_pred --------------------------------------CccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330 246 --------------------------------------RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS 287 (608)
Q Consensus 246 --------------------------------------~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 287 (608)
.+++.+.+.++.+..+. .+.....++.|++.+|.+..+..
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc
Confidence 12222333333332222 24455677888888877665543
Q ss_pred hhh-------------------CCCCCCceeeccCCCCC---------------CCCCccc--ccCCchhhhccc-----
Q psy3330 288 VAF-------------------KSLFSLKLVKINLIPNL---------------DSIDQPL--SLSLPPLLLSLS----- 326 (608)
Q Consensus 288 ~~f-------------------~~l~~L~~L~l~~~~~l---------------~~~~~~~--~~~lp~~~~~~~----- 326 (608)
..+ ..+++|+.++++.+... ...+... ....+.......
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL 425 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE
T ss_pred ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccch
Confidence 222 24556666666543210 0000000 000000000000
Q ss_pred -c--ccccc----cCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCc
Q psy3330 327 -I--PLAFS----LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399 (608)
Q Consensus 327 -~--~~~~~----~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~ 399 (608)
. ..... ........++.++++.|.+.++.+..+..+++|+.++++.+.....+.+..|..+++|++|+|++|+
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 0 00000 0111223568899999999999999999999999999988555667778889999999999999997
Q ss_pred cccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccc
Q psy3330 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCD 451 (608)
Q Consensus 400 ~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~Cd 451 (608)
+..+++..|.++++|++|+|++|+|+.+++..+ .+++|++|+|++|++..-
T Consensus 506 -L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 506 -LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred -cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 888887789999999999999999999987755 689999999999999763
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-33 Score=299.26 Aligned_cols=328 Identities=27% Similarity=0.353 Sum_probs=279.1
Q ss_pred ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL 150 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 150 (608)
..+++++.|+++++.++.++. +..+++|++|++++|.++.+++ +.++++|++|++++|.++.+++ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346789999999999998874 7889999999999999999876 9999999999999999998866 999999999
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 230 (608)
|++++|.+..++ + +..+++|++|++++|.+..++. +..+ ++|+.|+++ |.+.+..+ +.. +++|+.|+++
T Consensus 117 L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~-~~~~~~~~--~~~-l~~L~~L~l~ 185 (466)
T 1o6v_A 117 LTLFNNQITDID-P--LKNLTNLNRLELSSNTISDISA--LSGL--TSLQQLSFG-NQVTDLKP--LAN-LTTLERLDIS 185 (466)
T ss_dssp EECCSSCCCCCG-G--GTTCTTCSEEEEEEEEECCCGG--GTTC--TTCSEEEEE-ESCCCCGG--GTT-CTTCCEEECC
T ss_pred EECCCCCCCCCh-H--HcCCCCCCEEECCCCccCCChh--hccC--CcccEeecC-CcccCchh--hcc-CCCCCEEECc
Confidence 999999999875 3 8999999999999999988764 6777 569999997 55555543 665 9999999999
Q ss_pred CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCC
Q psy3330 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310 (608)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~ 310 (608)
+|.++.+. .+..+++|++|++++|+++++++ +..+++|+.|++++|.++++. .+..+++|+.|+++++.
T Consensus 186 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~----- 254 (466)
T 1o6v_A 186 SNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQ----- 254 (466)
T ss_dssp SSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSC-----
T ss_pred CCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCc-----
Confidence 99998863 48889999999999999999875 788999999999999999873 58889999999997543
Q ss_pred CcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCccc
Q psy3330 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQL 390 (608)
Q Consensus 311 ~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L 390 (608)
..+. ++ +. ...++++|++++|.++++++ +..+++|+.|+++. +.++.+.+ +..+++|
T Consensus 255 ---l~~~-~~-~~-------------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 255 ---ISNL-AP-LS-------------GLTKLTELKLGANQISNISP--LAGLTALTNLELNE-NQLEDISP--ISNLKNL 311 (466)
T ss_dssp ---CCCC-GG-GT-------------TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS-SCCSCCGG--GGGCTTC
T ss_pred ---cccc-hh-hh-------------cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC-CcccCchh--hcCCCCC
Confidence 1111 11 10 12256899999999999876 88999999999998 77877655 7889999
Q ss_pred ceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccC
Q psy3330 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN 453 (608)
Q Consensus 391 ~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~ 453 (608)
+.|++++|+ +..++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|++....+
T Consensus 312 ~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 312 TYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CEEECcCCc-CCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch
Confidence 999999998 666665 678999999999999999884 56678999999999999987544
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-33 Score=296.97 Aligned_cols=332 Identities=20% Similarity=0.187 Sum_probs=253.1
Q ss_pred CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 129 (608)
.+++++|++++|.++.+| .+..+++|++|++++|++++++ ++.+++|++|++++|.+++++ +.++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence 478999999999999986 6899999999999999999985 788999999999999999984 889999999999
Q ss_pred cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCC
Q psy3330 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENL 208 (608)
Q Consensus 130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~ 208 (608)
++|++++++ +..+++|++|++++|.+++++ ++.+++|++|++++|+ +..+ .+..+ ++|+.|++++|.
T Consensus 114 ~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~l--~~L~~L~ls~n~ 181 (457)
T 3bz5_A 114 DTNKLTKLD---VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL---DVTPQ--TQLTTLDCSFNK 181 (457)
T ss_dssp CSSCCSCCC---CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC---CCTTC--TTCCEEECCSSC
T ss_pred CCCcCCeec---CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc---ccccC--CcCCEEECCCCc
Confidence 999999873 889999999999999999873 7889999999999994 4444 25566 669999999999
Q ss_pred CccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288 (608)
Q Consensus 209 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 288 (608)
+++++ +.. +++|+.|++++|.++++ .+..+++|++|++++|+++++| +..+++|+.|++++|++++++.
T Consensus 182 l~~l~---l~~-l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~- 250 (457)
T 3bz5_A 182 ITELD---VSQ-NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV- 250 (457)
T ss_dssp CCCCC---CTT-CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCC-
T ss_pred cceec---ccc-CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCH-
Confidence 99974 555 89999999999999987 3788999999999999999987 7889999999999999999874
Q ss_pred hhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccc
Q psy3330 289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV 368 (608)
Q Consensus 289 ~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l 368 (608)
..+++|+.|+++.+. ++.|++++|.+.+..+ +..+++|+.|
T Consensus 251 --~~l~~L~~L~l~~n~-----------------------------------L~~L~l~~n~~~~~~~--~~~l~~L~~L 291 (457)
T 3bz5_A 251 --STLSKLTTLHCIQTD-----------------------------------LLEIDLTHNTQLIYFQ--AEGCRKIKEL 291 (457)
T ss_dssp --TTCTTCCEEECTTCC-----------------------------------CSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred --HHCCCCCEEeccCCC-----------------------------------CCEEECCCCccCCccc--ccccccCCEE
Confidence 456777777774321 1333444443332221 2333344444
Q ss_pred ccccCCCCCcC-------ChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC--------
Q psy3330 369 KINLIPNLDSI-------DQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-------- 433 (608)
Q Consensus 369 ~l~~~~~l~~~-------~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-------- 433 (608)
+++.+..+..+ ..-.+.++++|++|++++|+ ++.++ ++++++|+.|++++|+|+.++.-..
T Consensus 292 ~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~---l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l 367 (457)
T 3bz5_A 292 DVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNF 367 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC---CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSE
T ss_pred ECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc---cccCCcCcEEECCCCCCCCccccccccccCCcE
Confidence 44332211111 11125567899999999997 66674 7889999999999999987642100
Q ss_pred ----CCCCCCEEEccCCccccccCC
Q psy3330 434 ----PLERISFLDLSDNPLHCDCNL 454 (608)
Q Consensus 434 ----~l~~L~~L~L~~N~~~CdC~~ 454 (608)
.+..+..+++++|.+++..|.
T Consensus 368 ~g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 368 EAEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp EEEEEEEECCCBCCBTTBEEEECCT
T ss_pred EecceeeecCccccccCcEEEEcCh
Confidence 012345556666666665543
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-33 Score=285.02 Aligned_cols=303 Identities=26% Similarity=0.385 Sum_probs=190.4
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
+++++|+++++.+..++. +..+++|++|++++|.++++++ |..+++|++|++++|.++.++ +|.++++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 466777777777666653 5666777777777777766655 666677777777777766653 46667777777777
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
+|.++.+++ +..+++|++|++++|...... ..+..+++|++|++++|.+..+++ +..+ ++|+.|++++|.++
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~l--~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP--IANL--TDLYSLSLNYNQIE 190 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGC--TTCSEEECTTSCCC
T ss_pred CCcccCchh--hccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh--hccC--CCCCEEEccCCccc
Confidence 777666543 666677777777766443332 236666677777777766665554 4444 44666666666666
Q ss_pred cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290 (608)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f 290 (608)
++.+ +.. +++|+.+++++|.+..+.+ +..+++|++|++++|+++++++ +..+++|+.|++++|.++++ ..+
T Consensus 191 ~~~~--~~~-l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 191 DISP--LAS-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CCGG--GGG-CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred cccc--ccC-CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 5543 443 6666666666666665533 5566666666666666666654 56666666666666666654 234
Q ss_pred CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370 (608)
Q Consensus 291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l 370 (608)
..+++|+. |++++|++++++
T Consensus 262 ~~l~~L~~---------------------------------------------L~l~~n~l~~~~--------------- 281 (347)
T 4fmz_A 262 KDLTKLKM---------------------------------------------LNVGSNQISDIS--------------- 281 (347)
T ss_dssp TTCTTCCE---------------------------------------------EECCSSCCCCCG---------------
T ss_pred hcCCCcCE---------------------------------------------EEccCCccCCCh---------------
Confidence 44444443 444555555431
Q ss_pred ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccc
Q psy3330 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449 (608)
Q Consensus 371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~ 449 (608)
.|..+++|++|++++|+ ++.++...|.++++|+.|++++|.++.+++ +..+++|++|++++|++.
T Consensus 282 ------------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 ------------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ------------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred ------------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 24456777777777776 555555557777788888888887777766 556777888888887763
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.5e-33 Score=284.35 Aligned_cols=289 Identities=25% Similarity=0.348 Sum_probs=227.9
Q ss_pred cccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330 70 LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE 149 (608)
Q Consensus 70 ~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 149 (608)
+..+++|++|+++++.+..++. +..+++|++|++++|.++.+++ |.++++|++|++++|.++.+ ..|.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4578889999999999988763 7889999999999999998875 88999999999999998887 3588899999
Q ss_pred EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEc
Q psy3330 150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL 229 (608)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 229 (608)
+|++++|.+..+. + +..+++|++|++++|......+. +..+ ++|+.|++++|.+.+..+ +.. +++|+.|++
T Consensus 114 ~L~l~~n~i~~~~-~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l--~~L~~L~l~~~~~~~~~~--~~~-l~~L~~L~l 184 (347)
T 4fmz_A 114 ELYLNEDNISDIS-P--LANLTKMYSLNLGANHNLSDLSP-LSNM--TGLNYLTVTESKVKDVTP--IAN-LTDLYSLSL 184 (347)
T ss_dssp EEECTTSCCCCCG-G--GTTCTTCCEEECTTCTTCCCCGG-GTTC--TTCCEEECCSSCCCCCGG--GGG-CTTCSEEEC
T ss_pred EEECcCCcccCch-h--hccCCceeEEECCCCCCcccccc-hhhC--CCCcEEEecCCCcCCchh--hcc-CCCCCEEEc
Confidence 9999999998875 3 88899999999999854443332 5566 558888888888877654 554 788888888
Q ss_pred cCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCC
Q psy3330 230 SSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309 (608)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~ 309 (608)
++|.+..+.+ +..+++|+.|++++|.++++++ +..+++|+.|++++|.++++++ +..+++|+.|++
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l-------- 250 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI-------- 250 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC--------
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC--------
Confidence 8888877644 6778888888888888887764 7778888888888888877655 556666554444
Q ss_pred CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcc
Q psy3330 310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQ 389 (608)
Q Consensus 310 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~ 389 (608)
++|.++++ ..+..+++
T Consensus 251 -------------------------------------~~n~l~~~---------------------------~~~~~l~~ 266 (347)
T 4fmz_A 251 -------------------------------------GTNQISDI---------------------------NAVKDLTK 266 (347)
T ss_dssp -------------------------------------CSSCCCCC---------------------------GGGTTCTT
T ss_pred -------------------------------------CCCccCCC---------------------------hhHhcCCC
Confidence 55555443 23456789
Q ss_pred cceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCC
Q psy3330 390 LETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNL 454 (608)
Q Consensus 390 L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~ 454 (608)
|++|++++|+ ++.++. |..+++|+.|++++|+++.+++. +..+++|++|++++|++....++
T Consensus 267 L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 329 (347)
T 4fmz_A 267 LKMLNVGSNQ-ISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329 (347)
T ss_dssp CCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGG
T ss_pred cCEEEccCCc-cCCChh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccCh
Confidence 9999999997 888853 88899999999999999976654 44789999999999999886653
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=301.04 Aligned_cols=267 Identities=24% Similarity=0.314 Sum_probs=239.6
Q ss_pred CceEEEecCCCCccccCc-c--CccccEEEeccCCCccc-ccccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330 31 QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNV-HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS 106 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l-~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 106 (608)
....++.++..++.++.. + .+++++|+|++|.++.+ |..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 456788888889888643 3 36899999999999987 5689999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186 (608)
Q Consensus 107 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 186 (608)
+|.++.+.+..|.++++|++|++++|.++.+.+..|.++++|++|++++|.++.++ +..|.++++|+.|++++|.+..+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEe
Confidence 99999999899999999999999999999999999999999999999999999987 78899999999999999999999
Q ss_pred CcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhh
Q psy3330 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL 266 (608)
Q Consensus 187 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 266 (608)
++..+..+ ++|+.|++++|...+..+..... ..+|+.|++++|.++.+++..|..+++|+.|+|++|.++++++..|
T Consensus 192 ~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 192 RDYSFKRL--YRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CTTCSCSC--TTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred ChhhcccC--cccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 99888888 56999999998776655544444 5699999999999999988889999999999999999999998899
Q ss_pred hCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330 267 SKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301 (608)
Q Consensus 267 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l 301 (608)
.++++|+.|+|++|+++++.+.+|..+++|+.|++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 99999999999999999988877776666654444
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-33 Score=287.92 Aligned_cols=330 Identities=22% Similarity=0.285 Sum_probs=274.6
Q ss_pred CceEEEecCCCCccccCcc---CccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330 31 QKLEASCTDAGLEVVPIQL---NPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS 106 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~~---~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 106 (608)
..+.++.++..++.+|... .+++++|++++|.++.++. .+..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 3456778888888898764 3789999999999999875 89999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186 (608)
Q Consensus 107 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 186 (608)
+|.++.+++..|.++++|++|++++|.++.+++..|.++++|++|++++|.++... +..+++|+.|++++|.+..+
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEE
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeeccccccccc
Confidence 99999999888999999999999999999999999999999999999999999875 56779999999999998865
Q ss_pred CcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhh
Q psy3330 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL 266 (608)
Q Consensus 187 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 266 (608)
+. . .+++.|++++|.++.++... .++|+.|++++|.+++. ..+..+++|++|++++|.++++++..+
T Consensus 202 ~~-----~--~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 202 AI-----P--IAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp EC-----C--SSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred CC-----C--CcceEEECCCCeeeeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 43 2 56999999999999886543 46899999999999876 578899999999999999999988899
Q ss_pred hCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEec
Q psy3330 267 SKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346 (608)
Q Consensus 267 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~l 346 (608)
..+++|+.|++++|++++++.. +..+++|+ +|++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~---------------------------------------------~L~L 302 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLY-GQPIPTLK---------------------------------------------VLDL 302 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECS-SSCCTTCC---------------------------------------------EEEC
T ss_pred cccccCCEEECCCCcCcccCcc-cCCCCCCC---------------------------------------------EEEC
Confidence 9999999999999999987543 34455554 5566
Q ss_pred CCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCccc
Q psy3330 347 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS 426 (608)
Q Consensus 347 s~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~ 426 (608)
++|+++++++. +..+++|++|++++|+ +..++ +..+++|+.|++++|.++
T Consensus 303 ~~n~l~~~~~~--------------------------~~~l~~L~~L~L~~N~-i~~~~---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 303 SHNHLLHVERN--------------------------QPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSCCCCCGGG--------------------------HHHHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCcceecCcc--------------------------ccccCcCCEEECCCCc-cceeC---chhhccCCEEEcCCCCcc
Confidence 77777765432 2335788899999997 77776 567899999999999998
Q ss_pred ccCCCCCCCCCCCEEEccCCccccccCC
Q psy3330 427 HLEASHFPLERISFLDLSDNPLHCDCNL 454 (608)
Q Consensus 427 ~l~~~~~~l~~L~~L~L~~N~~~CdC~~ 454 (608)
.-.... -+..+....+.+++..|.++.
T Consensus 353 ~~~~~~-~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 353 CNSLRA-LFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp HHHHHH-HTTTCCTTTBCCCCSCCCTTC
T ss_pred chhHHH-HHHHHHhhcccccCceecccc
Confidence 321110 022333445678888898764
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.6e-32 Score=284.79 Aligned_cols=343 Identities=20% Similarity=0.283 Sum_probs=233.2
Q ss_pred ceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330 32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS 111 (608)
Q Consensus 32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~ 111 (608)
...+++++.+++.+|. +++++++|++++|.++++|.. .++|++|++++|++++++.. .++|++|++++|+++
T Consensus 73 l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCS
T ss_pred CCEEEecCCccccCCC-CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCC
Confidence 4689999999999987 678999999999999998864 47899999999999887652 268999999999999
Q ss_pred CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330 112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191 (608)
Q Consensus 112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 191 (608)
+++ .|.++++|++|++++|++++++.. ..+|++|++++|.+++++ .+.++++|++|++++|++++++..
T Consensus 145 ~lp--~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~~-- 213 (454)
T 1jl5_A 145 KLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPDL-- 213 (454)
T ss_dssp SCC--CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred CCc--ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCcCCCC--
Confidence 987 499999999999999999986532 358999999999999863 489999999999999999887653
Q ss_pred cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA 271 (608)
Q Consensus 192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~ 271 (608)
+ .+|+.|++++|.++.++ .+.. +++|+.|++++|++++++. .+++|++|++++|+++++|.. .++
T Consensus 214 ---~-~~L~~L~l~~n~l~~lp--~~~~-l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~ 278 (454)
T 1jl5_A 214 ---P-LSLESIVAGNNILEELP--ELQN-LPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQS 278 (454)
T ss_dssp ---C-TTCCEEECCSSCCSSCC--CCTT-CTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTT
T ss_pred ---c-CcccEEECcCCcCCccc--ccCC-CCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCc
Confidence 1 46999999999999765 3665 8999999999999988643 247899999999999998742 478
Q ss_pred CCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCC
Q psy3330 272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF 351 (608)
Q Consensus 272 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l 351 (608)
|+.|++++|++++++.. .++|+.|+++++. +.+ ++. . ..++++|++++|++
T Consensus 279 L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~--------l~~-i~~---------------~-~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSEL----PPNLYYLNASSNE--------IRS-LCD---------------L-PPSLEELNVSNNKL 329 (454)
T ss_dssp CCEEECCSSCCSEESCC----CTTCCEEECCSSC--------CSE-ECC---------------C-CTTCCEEECCSSCC
T ss_pred CCEEECcCCccCcccCc----CCcCCEEECcCCc--------CCc-ccC---------------C-cCcCCEEECCCCcc
Confidence 99999999999986531 2678888886432 111 110 0 01457888888888
Q ss_pred CCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccc--ccCcccCCCC-------------CCCC
Q psy3330 352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK--QLPSKLFQGN-------------TNLK 416 (608)
Q Consensus 352 ~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~--~lp~~~f~~l-------------~~L~ 416 (608)
++++.. +++|+.|+++. +.++.++. .+++|++|++++|+..+ .+|.. +..+ ++|+
T Consensus 330 ~~lp~~----~~~L~~L~L~~-N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 330 IELPAL----PPRLERLIASF-NHLAEVPE----LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp SCCCCC----CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------
T ss_pred cccccc----CCcCCEEECCC-Cccccccc----hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCC
Confidence 876542 45666666665 55555544 24666666666666333 34433 3333 4555
Q ss_pred EEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 417 SVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 417 ~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
.|++++|.++.+|.- -.+++.|.+++|.+.|
T Consensus 400 ~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 400 QLHVETNPLREFPDI---PESVEDLRMNSERVVD 430 (454)
T ss_dssp ----------------------------------
T ss_pred EEECCCCcCCccccc---hhhHhheeCcCcccCC
Confidence 555555555532210 0234444555555444
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=5.8e-33 Score=275.90 Aligned_cols=235 Identities=30% Similarity=0.452 Sum_probs=176.2
Q ss_pred CCCCCceecCCc-eEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330 21 ICPSRCQCFDQK-LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 21 ~Cp~~C~c~~~~-~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
+||..|.|.... ..++|++.+++.+|..+++++++|++++|.++.++. .+..+++|++|++++|.++.+.+..|.+++
T Consensus 1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 599999998644 789999999999999999999999999999998874 688899999999999999988888888889
Q ss_pred cccEEEccCCC-CCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330 99 KLLNLNISYNE-ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177 (608)
Q Consensus 99 ~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 177 (608)
+|++|++++|. ++.+++..|.++++|++|++++|.++.+.+..|.++++|++|++++|.++.+. +..|..+++|++|+
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLF 159 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEE
Confidence 99999999887 88887778888888888888888888887778888888888888888888776 56677777777777
Q ss_pred ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257 (608)
Q Consensus 178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 257 (608)
+++|+++.+++..+..+ ++|+.|++++|.+++..+..|.. +++|+.|++++|.++++.+..+..+++|+.|++++|.
T Consensus 160 l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGL--HSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccCHHHhcCc--cccCEEECCCCcccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 77777776666555554 33555555555555554444443 4455555555554444444444444444444444444
Q ss_pred CC
Q psy3330 258 LS 259 (608)
Q Consensus 258 l~ 259 (608)
+.
T Consensus 237 ~~ 238 (285)
T 1ozn_A 237 WV 238 (285)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-31 Score=283.82 Aligned_cols=311 Identities=21% Similarity=0.197 Sum_probs=249.0
Q ss_pred cccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCC
Q psy3330 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH 147 (608)
Q Consensus 68 ~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 147 (608)
.+++++++|++|++++|.+++++ .|..+++|++|++++|++++++ +..+++|++|++++|.+++++ ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCc
Confidence 46788999999999999999985 5899999999999999999985 889999999999999999873 889999
Q ss_pred CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL 227 (608)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 227 (608)
|++|++++|.+++++ ++.+++|++|++++|++++++ +..+ ++|+.|++++|...+.. .+.. +++|+.|
T Consensus 108 L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~---l~~l--~~L~~L~l~~n~~~~~~--~~~~-l~~L~~L 175 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID---VSHN--TQLTELDCHLNKKITKL--DVTP-QTQLTTL 175 (457)
T ss_dssp CCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC---CTTC--TTCCEEECTTCSCCCCC--CCTT-CTTCCEE
T ss_pred CCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec---cccC--CcCCEEECCCCCccccc--cccc-CCcCCEE
Confidence 999999999999863 889999999999999999874 5566 56999999999544333 3555 8999999
Q ss_pred EccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330 228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307 (608)
Q Consensus 228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l 307 (608)
++++|.+++++ +..+++|+.|++++|++++++ +..+++|+.|++++|++++++ +..+++|+.|+++++.
T Consensus 176 ~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~-- 244 (457)
T 3bz5_A 176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP-- 244 (457)
T ss_dssp ECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC--
T ss_pred ECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc--
Confidence 99999999874 788899999999999999984 788999999999999999975 7778888877775321
Q ss_pred CCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC
Q psy3330 308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN 387 (608)
Q Consensus 308 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l 387 (608)
+.+ +|. ....+++.|++++|++ +.++++.+..+..++ +.++
T Consensus 245 ------l~~-~~~---------------~~l~~L~~L~l~~n~L--------------~~L~l~~n~~~~~~~---~~~l 285 (457)
T 3bz5_A 245 ------LTE-LDV---------------STLSKLTTLHCIQTDL--------------LEIDLTHNTQLIYFQ---AEGC 285 (457)
T ss_dssp ------CSC-CCC---------------TTCTTCCEEECTTCCC--------------SCCCCTTCTTCCEEE---CTTC
T ss_pred ------CCC-cCH---------------HHCCCCCEEeccCCCC--------------CEEECCCCccCCccc---cccc
Confidence 111 010 0011235566655543 444555433333332 4678
Q ss_pred cccceeecccCccccccCcc-------cCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 388 IQLETVIINENMNLKQLPSK-------LFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 388 ~~L~~L~Ls~N~~l~~lp~~-------~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
++|+.|++++|..++.+|.. .++++++|+.|++++|+|+.++ +..+++|+.|++++|++..
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC
Confidence 99999999999877777642 2667899999999999999985 6678999999999999986
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=4.5e-32 Score=269.48 Aligned_cols=268 Identities=24% Similarity=0.373 Sum_probs=172.1
Q ss_pred cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEE
Q psy3330 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228 (608)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 228 (608)
+.++.+++.++.++ .. -.++|++|++++|+++.+++..+..+ ++|++|++++|.++++.+..|.. +++|++|+
T Consensus 14 ~~~~c~~~~l~~ip--~~--~~~~l~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP--VG--IPAASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTG-LALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCC--TT--CCTTCSEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTT-CTTCCEEE
T ss_pred eEEEcCcCCcccCC--cC--CCCCceEEEeeCCcCCccCHHHcccC--CCCCEEECCCCccceeCHhhcCC-ccCCCEEe
Confidence 34555555555543 11 12455555555555555554444444 33555555555555554444444 55555555
Q ss_pred ccCCC-CCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330 229 LSSNI-ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307 (608)
Q Consensus 229 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l 307 (608)
+++|. +..+.+..|.++++|++|++++|+++++++..+.++++|++|++++|+++++++..|..++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------- 153 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG------------- 153 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-------------
Confidence 55554 4444444455555555555555555555444455555555555555555544444444444
Q ss_pred CCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC
Q psy3330 308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN 387 (608)
Q Consensus 308 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l 387 (608)
+|+.|+++. +.++.++...|.++
T Consensus 154 --------------------------------------------------------~L~~L~l~~-n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 154 --------------------------------------------------------NLTHLFLHG-NRISSVPERAFRGL 176 (285)
T ss_dssp --------------------------------------------------------TCCEEECCS-SCCCEECTTTTTTC
T ss_pred --------------------------------------------------------CccEEECCC-CcccccCHHHhcCc
Confidence 444444443 44445555567778
Q ss_pred cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCChHHHHHHHhhhc
Q psy3330 388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVK 466 (608)
Q Consensus 388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~ 466 (608)
++|++|++++|+ +..++...|..+++|+.|++++|+++.+++. +..+++|+.|++++|||.|+|++.|+..|++..
T Consensus 177 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~-- 253 (285)
T 1ozn_A 177 HSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF-- 253 (285)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC--
T ss_pred cccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhc--
Confidence 999999999998 7777666699999999999999999998866 457899999999999999999999999998732
Q ss_pred cccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccc-c
Q psy3330 467 STMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVH-C 535 (608)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~-C 535 (608)
........|..|+.++|+.+.+++..++. |
T Consensus 254 ---------------------------------------~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 254 ---------------------------------------RGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp ---------------------------------------CSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ---------------------------------------ccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 12235778999999999999999887774 5
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1e-31 Score=273.05 Aligned_cols=310 Identities=21% Similarity=0.272 Sum_probs=187.8
Q ss_pred EecCCCCccccCccC--------ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccC
Q psy3330 36 SCTDAGLEVVPIQLN--------PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107 (608)
Q Consensus 36 ~C~~~~l~~ip~~~~--------~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~ 107 (608)
.+....++++|..+. .+++.++++++.++.+|..+. ++|+.|++++|.++.+++..|.++++|++|++++
T Consensus 10 ~~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 87 (332)
T 2ft3_A 10 TSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 87 (332)
T ss_dssp ---------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence 445555666665431 257778888877777776543 5777788887777777777777777788888877
Q ss_pred CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC--
Q psy3330 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD-- 185 (608)
Q Consensus 108 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-- 185 (608)
|.++.+.+.+|.++++|++|++++|.++.++...+ ++|++|++++|.+..++ +..|.++++|++|++++|.++.
T Consensus 88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 88 NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCC
Confidence 77777777777777777777777777776655433 57777777777777765 5667777777777777777753
Q ss_pred CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330 186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 265 (608)
+.+..+..+ +|+.|++++|.+++++... .++|+.|++++|.++++.+..|.++++|++|++++|+++++++..
T Consensus 164 ~~~~~~~~l---~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 164 FEPGAFDGL---KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp SCTTSSCSC---CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred CCcccccCC---ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 444444443 3666777777666654332 245666666666666666666666666666666666666666656
Q ss_pred hhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEe
Q psy3330 266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLD 345 (608)
Q Consensus 266 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ 345 (608)
+..+++|+.|++++|+++.++.. +..+++|+ +|+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~---------------------------------------------~L~ 270 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQ---------------------------------------------VVY 270 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTT-GGGCTTCC---------------------------------------------EEE
T ss_pred hhCCCCCCEEECCCCcCeecChh-hhcCccCC---------------------------------------------EEE
Confidence 66666666666666666654432 44444443 344
Q ss_pred cCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccc--ccCcccCCCCCCCCEEEcCCC
Q psy3330 346 LSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK--QLPSKLFQGNTNLKSVSLKGN 423 (608)
Q Consensus 346 ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~--~lp~~~f~~l~~L~~L~L~~N 423 (608)
+++|+++++++..|..... -.....|+.|++++|. +. .+++.+|..+++|+.|++++|
T Consensus 271 l~~N~l~~~~~~~~~~~~~-------------------~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGF-------------------GVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSC-------------------CSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCCCccChhHcccccc-------------------ccccccccceEeecCc-ccccccCcccccccchhhhhhcccc
Confidence 4566666655444332100 0012556677777776 43 455556667777777777666
Q ss_pred c
Q psy3330 424 S 424 (608)
Q Consensus 424 ~ 424 (608)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 3
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.8e-31 Score=268.58 Aligned_cols=296 Identities=23% Similarity=0.286 Sum_probs=213.2
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
.+++.++++++.++.+|..+. ++++.|++++|+++++++..|.++++|++|+|++|.++.+.+..|.++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367889999999988887553 688999999999999988889999999999999999998888889999999999999
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC--CCcccccCCCCCCceEEEccCCC
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQSLHYLYLNENL 208 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~ 208 (608)
+|.++.++...+ ++|++|++++|.+..+. +..|.++++|++|++++|.+.. +.+..+..+ ++|+.|++++|.
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~ 182 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--KKLSYIRIADTN 182 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC--TTCCEEECCSSC
T ss_pred CCcCCccChhhc---ccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCC--CCcCEEECCCCc
Confidence 999887765443 68899999999988887 7778888999999998888864 555566666 458888888887
Q ss_pred CccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288 (608)
Q Consensus 209 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 288 (608)
++.++... .++|+.|++++|.++++.+..|.++++|++|++++|+++++++..+..+++|+.|++++|+++.++.
T Consensus 183 l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~- 257 (330)
T 1xku_A 183 ITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG- 257 (330)
T ss_dssp CCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred cccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-
Confidence 77665433 2567777777777777767777777777777777777777776667777777777777777775543
Q ss_pred hhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccc
Q psy3330 289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV 368 (608)
Q Consensus 289 ~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l 368 (608)
.+..+++|+ +|++++|+++++++..|.....
T Consensus 258 ~l~~l~~L~---------------------------------------------~L~l~~N~i~~~~~~~f~~~~~---- 288 (330)
T 1xku_A 258 GLADHKYIQ---------------------------------------------VVYLHNNNISAIGSNDFCPPGY---- 288 (330)
T ss_dssp TTTTCSSCC---------------------------------------------EEECCSSCCCCCCTTSSSCSSC----
T ss_pred hhccCCCcC---------------------------------------------EEECCCCcCCccChhhcCCccc----
Confidence 244444443 4455666666666554432110
Q ss_pred ccccCCCCCcCChhhhcCCcccceeecccCcccc--ccCcccCCCCCCCCEEEcCCCc
Q psy3330 369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLK--QLPSKLFQGNTNLKSVSLKGNS 424 (608)
Q Consensus 369 ~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~--~lp~~~f~~l~~L~~L~L~~N~ 424 (608)
......++.|++++|. +. .+++..|..+.+++.++|++|+
T Consensus 289 ---------------~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 ---------------NTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---------------CTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ---------------ccccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 0113556677777776 43 3555557777777777777664
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=9.8e-32 Score=294.88 Aligned_cols=290 Identities=22% Similarity=0.286 Sum_probs=240.3
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 151 (608)
.+.+++.|++++|.++.+|+..|.++++|++|+|++|.++.+++..|.++++|++|+|++|.++++++..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36788999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccC
Q psy3330 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231 (608)
Q Consensus 152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 231 (608)
+|++|.++.++ +..|.++++|++|++++|.+..+++..+..+ ++|+.|++++|.++++. +.. +++|+.|++++
T Consensus 129 ~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~---~~~-l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVD---LSL-IPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECTTSCCSBCC---GGG-CTTCSEEECCS
T ss_pred EeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcC--CcCcEEECcCCCCCCcC---hhh-hhhhhhhhccc
Confidence 99999999887 7778999999999999999999888888887 56999999999888764 333 67788888888
Q ss_pred CCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCC
Q psy3330 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311 (608)
Q Consensus 232 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~ 311 (608)
|.++++ ...++|+.|++++|.++.++... .++|+.|++++|.+++. ..+..+++|+.
T Consensus 202 n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~------------- 258 (597)
T 3oja_B 202 NLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVE------------- 258 (597)
T ss_dssp SCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSE-------------
T ss_pred Cccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCE-------------
Confidence 887654 33567888888888887776432 25788888888888764 33555555544
Q ss_pred cccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccc
Q psy3330 312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE 391 (608)
Q Consensus 312 ~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~ 391 (608)
|++++|.+++++ +..|.++++|+
T Consensus 259 --------------------------------L~Ls~N~l~~~~-------------------------~~~~~~l~~L~ 281 (597)
T 3oja_B 259 --------------------------------VDLSYNELEKIM-------------------------YHPFVKMQRLE 281 (597)
T ss_dssp --------------------------------EECCSSCCCEEE-------------------------SGGGTTCSSCC
T ss_pred --------------------------------EECCCCccCCCC-------------------------HHHhcCccCCC
Confidence 444566665554 34556678899
Q ss_pred eeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 392 ~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
.|+|++|. +..+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++..
T Consensus 282 ~L~Ls~N~-l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 282 RLYISNNR-LVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp EEECTTSC-CCEEECS-SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred EEECCCCC-CCCCCcc-cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence 99999997 8888876 678999999999999999999888788999999999999965
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=1.9e-30 Score=274.13 Aligned_cols=237 Identities=20% Similarity=0.214 Sum_probs=169.5
Q ss_pred EEEecCCCCccccCccC--ccccEEEeccCCCc-ccccccccCCCc-------------cEEEeeCCCCcccCccccccc
Q psy3330 34 EASCTDAGLEVVPIQLN--PEVQTIILRENRIS-NVHYTLSFYIEL-------------RSLDLSVNKINVLGSHNFEYQ 97 (608)
Q Consensus 34 ~v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~l~~~~~~~~~L-------------~~L~Ls~n~l~~i~~~~f~~l 97 (608)
.++.++..+.++|..+. +++++|++++|.+. .+|.+++++.+| ++|++++|+++++|.. .
T Consensus 15 ~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~ 90 (454)
T 1jl5_A 15 EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----P 90 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----C
T ss_pred hhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----c
Confidence 45555666778887664 57888899988887 477777777765 8889998888887762 3
Q ss_pred ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 177 (608)
++|++|++++|.+++++. .+++|++|++++|++++++.. .++|++|++++|.+++++ .|+++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp---~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP---ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC---CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc---ccCCCCCCCEEE
Confidence 688889998888888763 247888888888888876431 268888888888888753 388888888888
Q ss_pred ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257 (608)
Q Consensus 178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 257 (608)
+++|+++++|... .+|++|++++|.+++++ .+.. +++|+.|++++|.+++++.. .++|++|++++|+
T Consensus 160 l~~N~l~~lp~~~------~~L~~L~L~~n~l~~l~--~~~~-l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 160 VDNNSLKKLPDLP------PSLEFIAAGNNQLEELP--ELQN-LPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNI 226 (454)
T ss_dssp CCSSCCSCCCCCC------TTCCEEECCSSCCSSCC--CCTT-CTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSC
T ss_pred CCCCcCcccCCCc------ccccEEECcCCcCCcCc--cccC-CCCCCEEECCCCcCCcCCCC----cCcccEEECcCCc
Confidence 8888888776431 45888888888888864 4665 88888888888888875431 3588888888888
Q ss_pred CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCC
Q psy3330 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304 (608)
Q Consensus 258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~ 304 (608)
++.+|. +..+++|+.|++++|++++++. ..++|+.|+++++
T Consensus 227 l~~lp~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 227 LEELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDN 267 (454)
T ss_dssp CSSCCC--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSS
T ss_pred CCcccc--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCC
Confidence 888873 7888888888888888887653 2467888888643
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3e-30 Score=259.59 Aligned_cols=261 Identities=20% Similarity=0.191 Sum_probs=230.8
Q ss_pred CceEEEecCCCCccccCccCccccEEEeccCCCcc---cccccccCCCccEEEeeC-CCCcccCcccccccccccEEEcc
Q psy3330 31 QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN---VHYTLSFYIELRSLDLSV-NKINVLGSHNFEYQNKLLNLNIS 106 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~---l~~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~~L~~L~Ls 106 (608)
.|..|.|.... ...++++|+|++|.+++ +|..+.++++|++|++++ |.+.+..+..|.++++|++|+|+
T Consensus 37 ~w~gv~C~~~~-------~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls 109 (313)
T 1ogq_A 37 TWLGVLCDTDT-------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109 (313)
T ss_dssp CSTTEEECCSS-------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE
T ss_pred CCcceEeCCCC-------CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc
Confidence 57789997543 23579999999999984 788999999999999995 99987777789999999999999
Q ss_pred CCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCC-CccEEEccCCCCCC
Q psy3330 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLK-SLRILKLDNNQILD 185 (608)
Q Consensus 107 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~ 185 (608)
+|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++.. +..+..++ +|++|++++|++.+
T Consensus 110 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEE
T ss_pred CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeeec
Confidence 99999777778999999999999999999888889999999999999999998665 77888888 99999999999997
Q ss_pred CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330 186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 265 (608)
..+..+..+ . |+.|++++|.+++..+..|.. +++|+.|++++|.+++..+. +..+++|++|++++|++++..+..
T Consensus 189 ~~~~~~~~l--~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 189 KIPPTFANL--N-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp ECCGGGGGC--C-CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred cCChHHhCC--c-ccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 777777776 3 999999999999988888887 99999999999999876554 788999999999999999655678
Q ss_pred hhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330 266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305 (608)
Q Consensus 266 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~ 305 (608)
+..+++|+.|++++|++++..|.. ..+++|+.+++++++
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 999999999999999999877764 788899999997554
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.96 E-value=1.4e-28 Score=244.19 Aligned_cols=218 Identities=27% Similarity=0.378 Sum_probs=175.5
Q ss_pred hcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCC
Q psy3330 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246 (608)
Q Consensus 167 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (608)
+.++++++++++++++++.+|.... +.++.|++++|.++++.+..|.. +++|+.|++++|.++.+.+. ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~--~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQVD--GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEEECC--SCCT
T ss_pred ccccCCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcccCC--CCCC
Confidence 5666777777777777777765432 45778888888887777777776 78888888888888776443 6778
Q ss_pred ccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccc
Q psy3330 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS 326 (608)
Q Consensus 247 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~ 326 (608)
+|++|++++|+++.+|. .+..+++|+.|++++|+++++++..|..+++|+.|++
T Consensus 78 ~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L------------------------- 131 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL------------------------- 131 (290)
T ss_dssp TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC-------------------------
T ss_pred cCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC-------------------------
Confidence 88888888888888774 6778888888888888888888777777777665444
Q ss_pred cccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCc
Q psy3330 327 IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406 (608)
Q Consensus 327 ~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~ 406 (608)
++|+++++++ ..|..+++|+.|++++|+ ++.+|.
T Consensus 132 --------------------~~N~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~-l~~l~~ 165 (290)
T 1p9a_G 132 --------------------KGNELKTLPP-------------------------GLLTPTPKLEKLSLANNN-LTELPA 165 (290)
T ss_dssp --------------------TTSCCCCCCT-------------------------TTTTTCTTCCEEECTTSC-CSCCCT
T ss_pred --------------------CCCCCCccCh-------------------------hhcccccCCCEEECCCCc-CCccCH
Confidence 5555555443 445566888899999997 889999
Q ss_pred ccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhh
Q psy3330 407 KLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQ 464 (608)
Q Consensus 407 ~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~ 464 (608)
++|.++++|+.|+|++|+|+.+|..++...+|+.++|++|||.|+|.+.|+..|++.+
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999854
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.96 E-value=4.2e-29 Score=241.21 Aligned_cols=224 Identities=23% Similarity=0.385 Sum_probs=168.3
Q ss_pred CCCCCCceecC-CceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCC-CcccCcccccc
Q psy3330 20 AICPSRCQCFD-QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNK-INVLGSHNFEY 96 (608)
Q Consensus 20 ~~Cp~~C~c~~-~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~-l~~i~~~~f~~ 96 (608)
+.||..|.|.. ....|+|.+ ++++|. +++++++|++++|+++.++. .+.++++|++|++++|. ++.+++..|.+
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~ 78 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES
T ss_pred CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC
Confidence 67999999987 778899987 899999 99999999999999998876 78889999999999996 88888888888
Q ss_pred cccccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc---EEEccCC-CCCccCchhhhcCCC
Q psy3330 97 QNKLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE---LLILSFN-NITYFEDSEIFSSLK 171 (608)
Q Consensus 97 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~l~ 171 (608)
+++|++|++++ |+++.+++.+|.++++|++|++++|++++++. |..+++|+ +|++++| .++.++ +..|.+++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~ 155 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLC 155 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTB
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcC-cccccchh
Confidence 89999999988 88888888888888888888888888888654 77777777 8888887 777776 56677777
Q ss_pred Ccc-EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCC-CCccCcccccCC-Ccc
Q psy3330 172 SLR-ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI-ISFINESSFVTL-RTL 248 (608)
Q Consensus 172 ~L~-~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L 248 (608)
+|+ +|++++|+++.++...+.. ++|+.|++++|+ ++.+++..|.++ ++|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~----------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG----------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT----------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred cceeEEEcCCCCCcccCHhhcCC----------------------------CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 777 7777777666655544332 345555555553 555555555555 666
Q ss_pred CEEeccCCcCCCCChhhhhCCCCCCEEeccCC
Q psy3330 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280 (608)
Q Consensus 249 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N 280 (608)
+.|++++|+++++|+. .+++|+.|+++++
T Consensus 208 ~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 208 SLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp SEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred cEEECCCCccccCChh---HhccCceeeccCc
Confidence 6666666666666543 4456666666554
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=5.1e-28 Score=238.03 Aligned_cols=216 Identities=25% Similarity=0.463 Sum_probs=165.0
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEE
Q psy3330 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251 (608)
Q Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 251 (608)
+.+.+++++++++.+|... + .+++.|++++|.++++++..|.. +++|++|++++|.++.+.+..|.++++|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~-~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----P-ADTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----C-TTCSEEECCSSCCSCCCTTSSSS-CTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCccCCCC----C-CCCCEEECcCCCCCeeCHHHhcC-CCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 4566777777776666432 2 44777777777777776666665 7777777777777777777677777777777
Q ss_pred eccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccccccc
Q psy3330 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAF 331 (608)
Q Consensus 252 ~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 331 (608)
++++|+++++++..|..+++|+.|++++|.++++++..|..+++|+.|++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------------------------------ 140 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL------------------------------ 140 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC------------------------------
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC------------------------------
Confidence 77777777777777777777778888777777777766666666655444
Q ss_pred ccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCC
Q psy3330 332 SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG 411 (608)
Q Consensus 332 ~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~ 411 (608)
++|.+++++ ...|..+++|++|++++|+ ++.++...|.+
T Consensus 141 ---------------s~n~l~~~~-------------------------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 179 (270)
T 2o6q_A 141 ---------------GYNELQSLP-------------------------KGVFDKLTSLKELRLYNNQ-LKRVPEGAFDK 179 (270)
T ss_dssp ---------------CSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred ---------------CCCcCCccC-------------------------HhHccCCcccceeEecCCc-CcEeChhHhcc
Confidence 445544443 3445667888999999997 88899888999
Q ss_pred CCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHhh
Q psy3330 412 NTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQLQ 464 (608)
Q Consensus 412 l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~~ 464 (608)
+++|+.|+|++|+++.+|+..+ .+++|+.|++++|||.|+|+ +.|+..|++..
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~ 234 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHH
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhh
Confidence 9999999999999999998766 68999999999999999997 78999998743
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=1.1e-28 Score=243.92 Aligned_cols=235 Identities=24% Similarity=0.345 Sum_probs=193.1
Q ss_pred CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103 (608)
Q Consensus 25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L 103 (608)
+|.|......++|.+.+++++|..+|+++++|++++|.++.++. .+.++++|++|++++|.++.+++..|.++++|++|
T Consensus 2 ~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp CSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 68887666789999999999999999999999999999999876 78899999999999999999998889999999999
Q ss_pred EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 183 (608)
++++|.++.+++..|.++++|++|++++|.+..+.+..+.++++|++|++++|.+..+..+..|..+++|++|++++|++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 99999999988888999999999999999999888777888899999999999888754367788888888888888887
Q ss_pred CCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCcc-EEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC
Q psy3330 184 LDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH-TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP 262 (608)
Q Consensus 184 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 262 (608)
+.+++..+..+. + ++.+. .|++++|.++.+.+..+... +|++|++++|++++++
T Consensus 162 ~~~~~~~~~~l~--~----------------------L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 162 QSIYCTDLRVLH--Q----------------------MPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 216 (276)
T ss_dssp CEECGGGGHHHH--T----------------------CTTCCEEEECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCC
T ss_pred CcCCHHHhhhhh--h----------------------ccccceeeecCCCcccccCccccCCC-cccEEECCCCceeecC
Confidence 776655444331 1 22222 56777777776665555443 7888888888888888
Q ss_pred hhhhhCCCCCCEEeccCCCCCc
Q psy3330 263 TKQLSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 263 ~~~~~~l~~L~~L~Ls~N~l~~ 284 (608)
+..+..+++|+.|++++|+++.
T Consensus 217 ~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTTTTCCSCCEEECCSSCBCC
T ss_pred HhHhcccccccEEEccCCcccc
Confidence 7778888888888888888875
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.6e-31 Score=281.71 Aligned_cols=382 Identities=17% Similarity=0.142 Sum_probs=258.9
Q ss_pred cCccccEEEeccCCCccccc--ccccCCCccEEEeeCCCCcccC----cccccccccccEEEccCCCCCCCChhh-hcCC
Q psy3330 49 LNPEVQTIILRENRISNVHY--TLSFYIELRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEISALSKDT-FKGL 121 (608)
Q Consensus 49 ~~~~l~~L~L~~n~i~~l~~--~~~~~~~L~~L~Ls~n~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~~~-~~~l 121 (608)
+|+++++|++++|.++..+. .+..+++|++|++++|+++... +..+..+++|++|+|++|.++...... +..+
T Consensus 1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 36789999999999987553 4788999999999999988542 345777899999999999987654433 3445
Q ss_pred C----cCcEeeccCCcCCcc----ChhhhCCCCCCcEEEccCCCCCccCchhh-----hcCCCCccEEEccCCCCCCCC-
Q psy3330 122 K----ELKTLDLSYNKISVI----NKTAFRDTLHLELLILSFNNITYFEDSEI-----FSSLKSLRILKLDNNQILDVP- 187 (608)
Q Consensus 122 ~----~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~- 187 (608)
+ +|++|++++|+++.. .+..+..+++|++|++++|.+.... +.. +...++|++|++++|+++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH-HHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 5 699999999998853 3678889999999999999987643 222 233568999999999888644
Q ss_pred ---cccccCCCCCCceEEEccCCCCccccCCCccc----cCCCccEEEccCCCCCcc----CcccccCCCccCEEeccCC
Q psy3330 188 ---NNVLSNLPHQSLHYLYLNENLIETVLDNSFPF----TLTNLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNN 256 (608)
Q Consensus 188 ---~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n 256 (608)
+..+..+ ++|++|++++|.++......+.. ..++|+.|++++|.++.. .+..+..+++|++|++++|
T Consensus 160 ~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAK--PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHC--TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhC--CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 2334445 56999999999987654333321 256899999999988864 2456677899999999999
Q ss_pred cCCCCC-----hhhhhCCCCCCEEeccCCCCCccC----hhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccc
Q psy3330 257 NLSAIP-----TKQLSKLSALVNLDLSGNNFSNID----SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSI 327 (608)
Q Consensus 257 ~l~~l~-----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~ 327 (608)
+++... +..+..+++|+.|++++|.++... +..+..+++|+.|+++++. +....+..+...
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--------i~~~~~~~l~~~-- 307 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--------LGDEGARLLCET-- 307 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC--------CHHHHHHHHHHH--
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC--------CchHHHHHHHHH--
Confidence 887632 333446889999999999988742 4456678899999886432 111111111000
Q ss_pred ccccccCCCCCceecEEecCCCCCCCcC----hhhhcccccccccccccCCCCCcCChhhhcC-----CcccceeecccC
Q psy3330 328 PLAFSLTPLGTLKCDRLDLSGNNFSNID----SVAFKSLFSLKLVKINLIPNLDSIDQRAFVD-----NIQLETVIINEN 398 (608)
Q Consensus 328 ~~~~~~~~~~~~~l~~L~ls~n~l~~~~----~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~-----l~~L~~L~Ls~N 398 (608)
......++++|++++|.+++.. +..+..+++|+.|+++. +.+...+...+.. .++|++|++++|
T Consensus 308 ------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 308 ------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp ------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 0001124588899999888764 33455567777777776 4555544433332 557777777777
Q ss_pred cccc-----ccCcccCCCCCCCCEEEcCCCcccccCC-----CCC-CCCCCCEEEccCCcccccc
Q psy3330 399 MNLK-----QLPSKLFQGNTNLKSVSLKGNSLSHLEA-----SHF-PLERISFLDLSDNPLHCDC 452 (608)
Q Consensus 399 ~~l~-----~lp~~~f~~l~~L~~L~L~~N~l~~l~~-----~~~-~l~~L~~L~L~~N~~~CdC 452 (608)
+ ++ .+|.. +..+++|++|+|++|+++.... .+. ...+|+.|++.++.+.+.+
T Consensus 381 ~-i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 381 D-VSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp C-CCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred C-CChhhHHHHHHH-HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 6 44 45544 5556777777777777663211 111 1345677777777766543
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.2e-29 Score=251.17 Aligned_cols=254 Identities=19% Similarity=0.165 Sum_probs=142.2
Q ss_pred CCccEEEeeCCCCcc--cCcccccccccccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330 74 IELRSLDLSVNKINV--LGSHNFEYQNKLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL 150 (608)
Q Consensus 74 ~~L~~L~Ls~n~l~~--i~~~~f~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 150 (608)
.+++.|++++|++++ ..+..|.++++|++|++++ |.+.+..+..|.++++|++|++++|.+++..+..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666664 3334566666666666663 5555444455666666666666666665555555555555555
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCC-CccEEEc
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT-NLHTLAL 229 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L 229 (608)
|++++|.+.+.. +..|..+++|++|++++|++++ ..+..+.. ++ +|+.|++
T Consensus 130 L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~--------------------------~~p~~l~~-l~~~L~~L~L 181 (313)
T 1ogq_A 130 LDFSYNALSGTL-PPSISSLPNLVGITFDGNRISG--------------------------AIPDSYGS-FSKLFTSMTI 181 (313)
T ss_dssp EECCSSEEESCC-CGGGGGCTTCCEEECCSSCCEE--------------------------ECCGGGGC-CCTTCCEEEC
T ss_pred EeCCCCccCCcC-ChHHhcCCCCCeEECcCCcccC--------------------------cCCHHHhh-hhhcCcEEEC
Confidence 555555555433 4445555555555554444432 22222222 22 3444444
Q ss_pred cCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCC
Q psy3330 230 SSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309 (608)
Q Consensus 230 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~ 309 (608)
++|.+++..+..+..++ |++|++++|++++.++..+..+++|+.|++++|.+++..+.
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------- 239 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--------------------- 239 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---------------------
Confidence 44444433333343333 44444444444444444444444444444444444322211
Q ss_pred CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcc
Q psy3330 310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQ 389 (608)
Q Consensus 310 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~ 389 (608)
+..+++
T Consensus 240 --------------------------------------------------------------------------~~~l~~ 245 (313)
T 1ogq_A 240 --------------------------------------------------------------------------VGLSKN 245 (313)
T ss_dssp --------------------------------------------------------------------------CCCCTT
T ss_pred --------------------------------------------------------------------------ccccCC
Confidence 122466
Q ss_pred cceeecccCccccccCcccCCCCCCCCEEEcCCCccc-ccCCCCCCCCCCCEEEccCCccccccC
Q psy3330 390 LETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS-HLEASHFPLERISFLDLSDNPLHCDCN 453 (608)
Q Consensus 390 L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~ 453 (608)
|++|++++|++.+.+|.. |..+++|+.|+|++|+++ .+|.. ..+++|+.+++++||+.|+-+
T Consensus 246 L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 677777777644466655 778888999999999888 55554 678889999999999888754
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=8.8e-28 Score=237.28 Aligned_cols=238 Identities=23% Similarity=0.325 Sum_probs=156.1
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 230 (608)
++..+..+..++ ..+. ++|++|++++|+++.+++..+..+ ++|++|++++|.++++.+..|.. +++|++|+++
T Consensus 12 ~~c~~~~l~~ip--~~l~--~~l~~L~ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~ 84 (276)
T 2z62_A 12 YQCMELNFYKIP--DNLP--FSTKNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILT 84 (276)
T ss_dssp EECTTSCCSSCC--SSSC--TTCCEEECTTCCCCEECTTTTTTC--TTCSEEECTTCCCCEECTTTTTT-CTTCCEEECT
T ss_pred EEecCCCccccC--CCCC--CCccEEECCCCcccccCHhHhccc--cCCcEEECCCCcCCccCHHHccC-CcCCCEEECC
Confidence 444444454443 2221 356666666666666665555555 34666666666666665555554 6666666666
Q ss_pred CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC-hhhhCCCCCCceeeccCCCCCCC
Q psy3330 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID-SVAFKSLFSLKLVKINLIPNLDS 309 (608)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~l~~~~~l~~ 309 (608)
+|.++++.+..|.++++|++|++++|+++++++..+..+++|+.|++++|.++++. +..|..+++|+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~------------ 152 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE------------ 152 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC------------
Confidence 66666665555666666666666666666655545666666666666666665543 44444444443
Q ss_pred CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcc
Q psy3330 310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQ 389 (608)
Q Consensus 310 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~ 389 (608)
+|++++|+++++++..|..+.+|+.+.+
T Consensus 153 ---------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~l~l------------------- 180 (276)
T 2z62_A 153 ---------------------------------HLDLSSNKIQSIYCTDLRVLHQMPLLNL------------------- 180 (276)
T ss_dssp ---------------------------------EEECCSSCCCEECGGGGHHHHTCTTCCE-------------------
T ss_pred ---------------------------------EEECCCCCCCcCCHHHhhhhhhccccce-------------------
Confidence 4555667776666655554433322111
Q ss_pred cceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330 390 LETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL 463 (608)
Q Consensus 390 L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~ 463 (608)
.|++++|+ ++.++...|.. .+|+.|+|++|+++.+|+..+ .+++|+.|++++|||.|+|+ +.|+..|.+.
T Consensus 181 --~L~ls~n~-l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 181 --SLDLSLNP-MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp --EEECCSSC-CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred --eeecCCCc-ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHh
Confidence 78999997 88898886764 489999999999999998875 68999999999999999996 7899999874
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.3e-27 Score=235.27 Aligned_cols=210 Identities=28% Similarity=0.457 Sum_probs=162.4
Q ss_pred CCCCC---CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccc
Q psy3330 20 AICPS---RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFE 95 (608)
Q Consensus 20 ~~Cp~---~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~ 95 (608)
+.|++ .|.|......++|++.+++.+|..+|+++++|++++|.++.++. .+.++++|++|++++|.++.+++..|.
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 55665 49998777899999999999999999999999999999998875 788889999999999999888888888
Q ss_pred ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175 (608)
Q Consensus 96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 175 (608)
++++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|++|++++|.++.++ +..|..+++|++
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 161 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKE 161 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccce
Confidence 8889999999988888888888888888888888888888888777888888888888888888776 566777777777
Q ss_pred EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCC
Q psy3330 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233 (608)
Q Consensus 176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 233 (608)
|++++|+++.+++..+..+ ++|+.|++++|.++++++..|.. +++|+.|++++|.
T Consensus 162 L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKL--TELKTLKLDNNQLKRVPEGAFDS-LEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTC--TTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSC
T ss_pred eEecCCcCcEeChhHhccC--CCcCEEECCCCcCCcCCHHHhcc-ccCCCEEEecCCC
Confidence 7777777777666555544 33555555555555444444433 4444444444443
No 60
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.95 E-value=3.7e-28 Score=248.41 Aligned_cols=247 Identities=23% Similarity=0.326 Sum_probs=166.7
Q ss_pred CCCCC-ceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCC-cccCccccccc
Q psy3330 21 ICPSR-CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKI-NVLGSHNFEYQ 97 (608)
Q Consensus 21 ~Cp~~-C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l-~~i~~~~f~~l 97 (608)
.||+. |+|.. ..|+|++.++++||.++|+++++|+|++|+|+.+|+ +|.++++|++|+|++|++ +.+++++|.++
T Consensus 1 gCp~~~C~C~~--~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 1 GCHHRICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp -CCCSSSEEET--TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CCCCCccEeeC--CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 49986 99964 579999999999999999999999999999999886 688899999999999987 45777888888
Q ss_pred ccccE-EEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC-CCCCccCchhhhcCCC-Ccc
Q psy3330 98 NKLLN-LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF-NNITYFEDSEIFSSLK-SLR 174 (608)
Q Consensus 98 ~~L~~-L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~-~L~ 174 (608)
+++++ +.++.|+++.+++++|.++++|++|++++|+++.+++..+....++..|++.+ +.+..++ +..|..+. .++
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~f~~~~~~l~ 157 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESV 157 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc-ccchhhcchhhh
Confidence 88765 55667888888888888888888888888888888777776677777777755 4566665 45555543 456
Q ss_pred EEEccCCCCCCCCcccccCCCCCCceEEEccC-CCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE-NLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253 (608)
Q Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 253 (608)
.|++++|+++.++..++.. .+++.+++.+ |.++.+++..|.. +++|+.|++++|+++.+++..|.+++.|+.++
T Consensus 158 ~L~L~~N~i~~i~~~~f~~---~~L~~l~l~~~n~l~~i~~~~f~~-l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~- 232 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNG---TQLDELNLSDNNNLEELPNDVFHG-ASGPVILDISRTRIHSLPSYGLENLKKLRARS- 232 (350)
T ss_dssp EEECCSSCCCEECTTSSTT---EEEEEEECTTCTTCCCCCTTTTTT-EECCSEEECTTSCCCCCCSSSCTTCCEEECTT-
T ss_pred hhccccccccCCChhhccc---cchhHHhhccCCcccCCCHHHhcc-CcccchhhcCCCCcCccChhhhccchHhhhcc-
Confidence 6666666666666554432 2355555542 4455554444444 55555555555555555443333333222221
Q ss_pred cCCcCCCCChhhhhCCCCCCEEecc
Q psy3330 254 SNNNLSAIPTKQLSKLSALVNLDLS 278 (608)
Q Consensus 254 s~n~l~~l~~~~~~~l~~L~~L~Ls 278 (608)
.+.++.+|+ +..+++|+.++++
T Consensus 233 -~~~l~~lP~--l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 233 -TYNLKKLPT--LEKLVALMEASLT 254 (350)
T ss_dssp -CTTCCCCCC--TTTCCSCCEEECS
T ss_pred -CCCcCcCCC--chhCcChhhCcCC
Confidence 123444442 4444555555544
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.2e-27 Score=256.00 Aligned_cols=278 Identities=23% Similarity=0.263 Sum_probs=221.2
Q ss_pred CCCCCceecC-CceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330 21 ICPSRCQCFD-QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNK 99 (608)
Q Consensus 21 ~Cp~~C~c~~-~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~ 99 (608)
.||..|.|.. ....++|++.+++.+|..+++++++|++++|.++.+|. .+++|++|+|++|+++.++. .+++
T Consensus 30 ~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~ 102 (622)
T 3g06_A 30 VVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPG 102 (622)
T ss_dssp HHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTT
T ss_pred cCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCC
Confidence 4677788863 36789999999999999999999999999999999987 57899999999999999887 6789
Q ss_pred ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEcc
Q psy3330 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLD 179 (608)
Q Consensus 100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 179 (608)
|++|++++|.++.++. .+++|+.|++++|+++.++. .+++|++|++++|.+++++ . .+.+|+.|+++
T Consensus 103 L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~--~---~~~~L~~L~L~ 169 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP--A---LPSELCKLWAY 169 (622)
T ss_dssp CCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC--C---CCTTCCEEECC
T ss_pred CCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC--C---ccCCCCEEECC
Confidence 9999999999999875 57899999999999998865 2589999999999999874 2 35789999999
Q ss_pred CCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCC
Q psy3330 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259 (608)
Q Consensus 180 ~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 259 (608)
+|.++.++. .+ ++|+.|++++|.+++++. .+++|+.|++++|.++.++. .+++|+.|++++|+++
T Consensus 170 ~N~l~~l~~----~~--~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 170 NNQLTSLPM----LP--SGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234 (622)
T ss_dssp SSCCSCCCC----CC--TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS
T ss_pred CCCCCCCcc----cC--CCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccC
Confidence 999999882 23 669999999999988653 15789999999999987753 3578999999999999
Q ss_pred CCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCc
Q psy3330 260 AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339 (608)
Q Consensus 260 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~ 339 (608)
++| ..+++|+.|++++|.++.++. .+++|+.|+++++ .+. .+|..+..++
T Consensus 235 ~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N--------~L~-~lp~~l~~l~------------- 284 (622)
T 3g06_A 235 SLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN--------QLT-RLPESLIHLS------------- 284 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS--------CCC-SCCGGGGGSC-------------
T ss_pred cCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC--------CCC-cCCHHHhhcc-------------
Confidence 987 456899999999999998775 4567777777532 111 2333222211
Q ss_pred eecEEecCCCCCCCcChhhhcccc
Q psy3330 340 KCDRLDLSGNNFSNIDSVAFKSLF 363 (608)
Q Consensus 340 ~l~~L~ls~n~l~~~~~~~~~~l~ 363 (608)
+++.|++++|.+++..+..+..++
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHhcc
Confidence 345666666666666655555443
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.9e-26 Score=250.88 Aligned_cols=259 Identities=22% Similarity=0.254 Sum_probs=184.8
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
.+++.|++++|.++.+|..+. ++|++|++++|+|+.++. .+++|++|+|++|+++.++. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 357889999999998887665 788999999999888876 46788899999988888775 67888888888
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
+|+++.++. .+++|+.|++++|+++.++ . .+++|++|++++|.+++++.. . .+|+.|++++|.++
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~----~l~~L~~L~Ls~N~l~~l~~~----~--~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V----LPPGLQELSVSDNQLASLPAL----P--SELCKLWAYNNQLT 174 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCCC----C--TTCCEEECCSSCCS
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCcCC-C----CCCCCCEEECcCCcCCCcCCc----c--CCCCEEECCCCCCC
Confidence 888888755 4677888888888888764 2 247888888888888776642 2 45777888887777
Q ss_pred cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290 (608)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f 290 (608)
+++ .. +++|+.|++++|.+++++. .+++|+.|++++|.++.++. .+++|+.|++++|.+++++
T Consensus 175 ~l~----~~-~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 175 SLP----ML-PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp CCC----CC-CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred CCc----cc-CCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----
Confidence 754 22 5677777777777776543 24677777777777777663 2366777777777776654
Q ss_pred CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370 (608)
Q Consensus 291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l 370 (608)
..+++| +.|++++|+|++++.
T Consensus 238 ~~l~~L---------------------------------------------~~L~Ls~N~L~~lp~-------------- 258 (622)
T 3g06_A 238 VLPSEL---------------------------------------------KELMVSGNRLTSLPM-------------- 258 (622)
T ss_dssp CCCTTC---------------------------------------------CEEECCSSCCSCCCC--------------
T ss_pred CCCCcC---------------------------------------------cEEECCCCCCCcCCc--------------
Confidence 222333 344555666655442
Q ss_pred ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccc
Q psy3330 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427 (608)
Q Consensus 371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~ 427 (608)
.+++|+.|+|++|+ +..+|.. |.++++|+.|+|++|.++.
T Consensus 259 ---------------~~~~L~~L~Ls~N~-L~~lp~~-l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 ---------------LPSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp ---------------CCTTCCEEECCSSC-CCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred ---------------ccccCcEEeCCCCC-CCcCCHH-HhhccccCEEEecCCCCCC
Confidence 13567777777776 6677765 6777777888888777774
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-28 Score=246.71 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=61.4
Q ss_pred CcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHH
Q psy3330 387 NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWIL 460 (608)
Q Consensus 387 l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~ 460 (608)
+++|++|++++|+ ++.+|.. |..+++|+.|+|++|+|+.+|..+..+++|+.|++++|+|.|+|...|+..+
T Consensus 190 l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 190 FAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp CTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred cccCCEEECCCCc-CCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 3667778888886 7778777 7889999999999999999999888899999999999999999876666544
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.8e-28 Score=246.13 Aligned_cols=269 Identities=19% Similarity=0.236 Sum_probs=223.0
Q ss_pred ccccCCCCCCceecC--------------CceEEEecCCCCccccCc-c--CccccEEEeccCCCccccc-ccccCCCcc
Q psy3330 16 KLNKAICPSRCQCFD--------------QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNVHY-TLSFYIELR 77 (608)
Q Consensus 16 ~~~~~~Cp~~C~c~~--------------~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l~~-~~~~~~~L~ 77 (608)
..+...||+.|.|.. ....++.++..++.+|.. + .+++++|++++|.++.+++ .+.++++|+
T Consensus 24 ~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 24 NQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp ---CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 344567999887752 346788888899988863 3 3689999999999999864 799999999
Q ss_pred EEEeeCCCCcccCcccccccccccEEEccCCCCCCCCh-hhhcCCCcCcEeeccCC-cCCccChhhhCCCCCCcEEEccC
Q psy3330 78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYN-KISVINKTAFRDTLHLELLILSF 155 (608)
Q Consensus 78 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 155 (608)
+|++++|+++.+++..|.++++|++|++++|+++.++. ..|.++++|++|++++| .++.+++..|.++++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999999999889999999999999999999987 67999999999999999 58888889999999999999999
Q ss_pred CCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccc--cCCCccEEEccCCC
Q psy3330 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF--TLTNLHTLALSSNI 233 (608)
Q Consensus 156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~ 233 (608)
|.+.+.. +..|..+++|++|++++|.+..++...+..+ ++|+.|++++|.+++.....+.. ....++.++++++.
T Consensus 184 n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 184 SDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVT--SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp TTCCEEC-TTTTTTCSEEEEEEEECSCSTTHHHHHHHHT--TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCcCccC-HHHHhccccCCeecCCCCccccchhhhhhhc--ccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 9999987 7889999999999999999988877666556 56999999999998876554331 25567888888887
Q ss_pred CCcc----CcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330 234 ISFI----NESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS 287 (608)
Q Consensus 234 l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 287 (608)
+.+. .+..+..+++|++|++++|+++.+|...|..+++|+.|++++|++.+..+
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7652 24556778888888888888888887777888888888888888776443
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.6e-29 Score=268.93 Aligned_cols=372 Identities=17% Similarity=0.143 Sum_probs=268.7
Q ss_pred EEEecCCCCccccCc----cCccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCcccCcccc-cccc----c
Q psy3330 34 EASCTDAGLEVVPIQ----LNPEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINVLGSHNF-EYQN----K 99 (608)
Q Consensus 34 ~v~C~~~~l~~ip~~----~~~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f-~~l~----~ 99 (608)
.++.++..++..+.. ..+++++|++++|.++. ++..+..+++|++|++++|.+++.....+ ..++ +
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 86 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence 455555555554421 23689999999999984 45678889999999999999987544333 3344 7
Q ss_pred ccEEEccCCCCCCC----ChhhhcCCCcCcEeeccCCcCCccChhh-----hCCCCCCcEEEccCCCCCccCc---hhhh
Q psy3330 100 LLNLNISYNEISAL----SKDTFKGLKELKTLDLSYNKISVINKTA-----FRDTLHLELLILSFNNITYFED---SEIF 167 (608)
Q Consensus 100 L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~---~~~~ 167 (608)
|++|+|++|.++.. .+..+..+++|++|++++|.++...... +...++|++|++++|.++.... +..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999853 3677899999999999999987654433 2346789999999999987431 4456
Q ss_pred cCCCCccEEEccCCCCCCCCccccc-----CCCCCCceEEEccCCCCcccc----CCCccccCCCccEEEccCCCCCccC
Q psy3330 168 SSLKSLRILKLDNNQILDVPNNVLS-----NLPHQSLHYLYLNENLIETVL----DNSFPFTLTNLHTLALSSNIISFIN 238 (608)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~ 238 (608)
..+++|++|++++|.+.......+. .. ++|+.|++++|.++... +..+.. +++|+.|++++|.++...
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSP--CQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC--CCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCC--CCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHH
Confidence 7789999999999998754333332 12 46999999999998742 344555 899999999999987542
Q ss_pred -----cccccCCCccCEEeccCCcCCCCC----hhhhhCCCCCCEEeccCCCCCccChhhhC-----CCCCCceeeccCC
Q psy3330 239 -----ESSFVTLRTLHSLDLSNNNLSAIP----TKQLSKLSALVNLDLSGNNFSNIDSVAFK-----SLFSLKLVKINLI 304 (608)
Q Consensus 239 -----~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~-----~l~~L~~L~l~~~ 304 (608)
+..+..+++|++|++++|+++... +..+..+++|+.|++++|.++......+. ..++|+.|+++++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 333446889999999999998731 34677899999999999999865544442 3469999999754
Q ss_pred CCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcc-----cccccccccccCCCCCc-
Q psy3330 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS-----LFSLKLVKINLIPNLDS- 378 (608)
Q Consensus 305 ~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~-----l~~L~~l~l~~~~~l~~- 378 (608)
.- . ......++..+... .++++|++++|.+++.....+.. .++|+.|+++. +.++.
T Consensus 324 ~l-~---~~~~~~l~~~l~~~-------------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~i~~~ 385 (461)
T 1z7x_W 324 SF-T---AACCSHFSSVLAQN-------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD-CDVSDS 385 (461)
T ss_dssp CC-B---GGGHHHHHHHHHHC-------------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCCHH
T ss_pred CC-c---hHHHHHHHHHHhhC-------------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC-CCCChh
Confidence 31 1 00000122222211 15689999999998876665543 67999999998 66764
Q ss_pred ---CChhhhcCCcccceeecccCccccccCcccC-----CCCCCCCEEEcCCCcccc
Q psy3330 379 ---IDQRAFVDNIQLETVIINENMNLKQLPSKLF-----QGNTNLKSVSLKGNSLSH 427 (608)
Q Consensus 379 ---~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f-----~~l~~L~~L~L~~N~l~~ 427 (608)
..+..+..+++|++|++++|+ ++......+ ....+|+.|++.++.+..
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred hHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 335567788999999999997 554321111 234578899988887763
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.2e-28 Score=244.79 Aligned_cols=243 Identities=20% Similarity=0.153 Sum_probs=160.1
Q ss_pred EEEecCCCCccc---------cCccCccccEEEeccCCCcc--cccccc-------cCCCccEEEeeCCCCcccCcccc-
Q psy3330 34 EASCTDAGLEVV---------PIQLNPEVQTIILRENRISN--VHYTLS-------FYIELRSLDLSVNKINVLGSHNF- 94 (608)
Q Consensus 34 ~v~C~~~~l~~i---------p~~~~~~l~~L~L~~n~i~~--l~~~~~-------~~~~L~~L~Ls~n~l~~i~~~~f- 94 (608)
.+.|...+++.+ |..++..+++|+|++|.++. ++..+. ++++|++|++++|++++..+..+
T Consensus 37 ~~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred EEEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 455655555555 66666667777777777754 333333 57777788888777775333333
Q ss_pred -cccccccEEEccCCCCCCCChhhhcCC-----CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC-chhh-
Q psy3330 95 -EYQNKLLNLNISYNEISALSKDTFKGL-----KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE-DSEI- 166 (608)
Q Consensus 95 -~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~- 166 (608)
..+++|++|+|++|+++++ +..+.++ ++|++|++++|+++++++..|.++++|++|++++|++.+.. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6777788888887777777 3556655 77777888777777777777777777788888777765421 0122
Q ss_pred -hcCCCCccEEEccCCCCCCCC---cccccCCCCCCceEEEccCCCCccccC-CCccccCCCccEEEccCCCCCccCccc
Q psy3330 167 -FSSLKSLRILKLDNNQILDVP---NNVLSNLPHQSLHYLYLNENLIETVLD-NSFPFTLTNLHTLALSSNIISFINESS 241 (608)
Q Consensus 167 -~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 241 (608)
+..+++|++|++++|+++.++ ...+..+ ++|+.|++++|.+++..+ ..+.. +++|+.|++++|.++.++. .
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~~ip~-~ 271 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAAR--VQLQGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQVPK-G 271 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT--CCCSEEECTTSCCCSSCCCSCCCC-CTTCCEEECTTSCCSSCCS-S
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcC--CCCCEEECCCCcCCcccchhhhhh-cCCCCEEECCCCccChhhh-h
Confidence 267777777777777776432 2333444 447777777777777553 33333 6777777777777775543 3
Q ss_pred ccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCcc
Q psy3330 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285 (608)
Q Consensus 242 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 285 (608)
+. ++|++|++++|+++++|. +..+++|+.|++++|++++.
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred cc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 32 677777777777777753 67777777777777777653
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=239.71 Aligned_cols=231 Identities=23% Similarity=0.232 Sum_probs=161.1
Q ss_pred ccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330 53 VQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 131 (608)
++..+++.+.+...+. .+..+++|++|++++|+++.+++..|..+++|++|+|++|.++++++ |..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444455555554433 34456678888888888887777777778888888888887776654 77778888888888
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
|.++++++ .++|++|++++|.+.++. +. .+++|++|++++|+++.+++..+..+ ++|+.|++++|.+++
T Consensus 90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~-~~---~~~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 90 NYVQELLV-----GPSIETLHAANNNISRVS-CS---RGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDT 158 (317)
T ss_dssp SEEEEEEE-----CTTCCEEECCSSCCSEEE-EC---CCSSCEEEECCSSCCCSGGGBCTGGG--SSEEEEECTTSCCCE
T ss_pred CccccccC-----CCCcCEEECCCCccCCcC-cc---ccCCCCEEECCCCCCCCccchhhhcc--CCCCEEECCCCCCCc
Confidence 87776642 367888888888877765 22 35677888888888877777666666 458888888888877
Q ss_pred ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330 212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291 (608)
Q Consensus 212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~ 291 (608)
..+..+...+++|++|++++|.++.+.. ...+++|++|++++|+++++++. +..+++|+.|++++|+++.++. .+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-Hhh
Confidence 7666654337778888888888777633 23477888888888888877754 7777888888888888877644 355
Q ss_pred CCCCCceee
Q psy3330 292 SLFSLKLVK 300 (608)
Q Consensus 292 ~l~~L~~L~ 300 (608)
.+++|+.|+
T Consensus 235 ~l~~L~~L~ 243 (317)
T 3o53_A 235 FSQNLEHFD 243 (317)
T ss_dssp CCTTCCEEE
T ss_pred cCCCCCEEE
Confidence 555554433
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.7e-26 Score=229.72 Aligned_cols=228 Identities=16% Similarity=0.144 Sum_probs=178.5
Q ss_pred CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 129 (608)
.++++.|+|++|.++.+|..+..+++|++|+|++|.++.+|. .|.++++|++|+|++|.++.++ ..|.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEEC
Confidence 468999999999999999999999999999999999997764 7899999999999999999876 46899999999999
Q ss_pred cCCcCCccChhhhC---------CCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCce
Q psy3330 130 SYNKISVINKTAFR---------DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200 (608)
Q Consensus 130 s~n~l~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 200 (608)
++|++.+..+..+. ++++|++|++++|.++.+ |..+.++++|++|++++|++.++++. +..+ ++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l--~~L~ 232 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSALGPA-IHHL--PKLE 232 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCCCCGG-GGGC--TTCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCcCchh-hccC--CCCC
Confidence 99877665555443 478888888888888865 45688888888888888888877664 5566 4577
Q ss_pred EEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCC
Q psy3330 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280 (608)
Q Consensus 201 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N 280 (608)
.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.+++..+
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 7777777777777777765 777777777777776666666777777777777776665544456777777777777766
Q ss_pred CCCcc
Q psy3330 281 NFSNI 285 (608)
Q Consensus 281 ~l~~~ 285 (608)
.+..+
T Consensus 312 ~~~~l 316 (328)
T 4fcg_A 312 LQAQL 316 (328)
T ss_dssp GSCC-
T ss_pred HHHHH
Confidence 55443
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.94 E-value=2e-26 Score=218.94 Aligned_cols=200 Identities=26% Similarity=0.462 Sum_probs=156.7
Q ss_pred cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCC
Q psy3330 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304 (608)
Q Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~ 304 (608)
+.++++++.++.++.. + .++++.|++++|+++++++..|..+++|+.|+|++|+++++.+.+|..+++|+.|++
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L--- 87 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL--- 87 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC---
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC---
Confidence 5677777777776442 2 257788888888888877777777888888888888888777777777766655444
Q ss_pred CCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhh
Q psy3330 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAF 384 (608)
Q Consensus 305 ~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f 384 (608)
++|+|+.++ ...|
T Consensus 88 ------------------------------------------s~N~l~~l~-------------------------~~~f 100 (220)
T 2v9t_B 88 ------------------------------------------YGNKITELP-------------------------KSLF 100 (220)
T ss_dssp ------------------------------------------CSSCCCCCC-------------------------TTTT
T ss_pred ------------------------------------------CCCcCCccC-------------------------HhHc
Confidence 455555444 4556
Q ss_pred cCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHh
Q psy3330 385 VDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQL 463 (608)
Q Consensus 385 ~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~ 463 (608)
.++++|++|+|++|+ ++.++...|.++++|+.|+|++|+|+.+++..+ .+++|+.|++++|||.|||++.|+..|++.
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence 677899999999997 888888889999999999999999999998765 689999999999999999999999999873
Q ss_pred hhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCcc
Q psy3330 464 QVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNT 539 (608)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~~ 539 (608)
.. .......|++|..++|+.+.+++.+++.|..+.
T Consensus 180 ~~-----------------------------------------~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~~ 214 (220)
T 2v9t_B 180 NP-----------------------------------------IETSGARCTSPRRLANKRIGQIKSKKFRCSAAA 214 (220)
T ss_dssp CC-----------------------------------------CBCSCCBEEESGGGTTCBGGGSCGGGCCC----
T ss_pred CC-----------------------------------------CCccCCCcCCchHHcCCchhhCCHHHCcCcccc
Confidence 20 112357899999999999999999999997643
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.6e-27 Score=239.58 Aligned_cols=238 Identities=19% Similarity=0.142 Sum_probs=173.5
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcc-ccc-------ccccccEEEccCCCCCCCChhhh--cC
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSH-NFE-------YQNKLLNLNISYNEISALSKDTF--KG 120 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~-~f~-------~l~~L~~L~Ls~n~i~~~~~~~~--~~ 120 (608)
+++++|++++|.+ .+|..+... |+.|++++|.++.+... .+. ++++|++|+|++|.+++..+..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4678888888888 777655544 88888888888653221 222 57889999999998886544444 78
Q ss_pred CCcCcEeeccCCcCCccChhhhCCC-----CCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC---Ccc-cc
Q psy3330 121 LKELKTLDLSYNKISVINKTAFRDT-----LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV---PNN-VL 191 (608)
Q Consensus 121 l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~ 191 (608)
+++|++|++++|+++++ +..+..+ ++|++|++++|++.++. +..|+++++|++|++++|++.+. +.. .+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 88899999999988887 5666655 88899999999888886 67888888999999998886542 111 22
Q ss_pred cCCCCCCceEEEccCCCCcccc---CCCccccCCCccEEEccCCCCCccCc-ccccCCCccCEEeccCCcCCCCChhhhh
Q psy3330 192 SNLPHQSLHYLYLNENLIETVL---DNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSAIPTKQLS 267 (608)
Q Consensus 192 ~~l~~~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 267 (608)
..+ ++|++|++++|.++++. ...+.. +++|+.|++++|.+++..+ ..+..+++|++|++++|+++.+|...+
T Consensus 198 ~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 198 LKF--PTLQVLALRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp TSC--TTCCEEECTTSCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred ccC--CCCCEEECCCCcCcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 555 56888888888887432 223333 7888888888888887653 456667888888888888888875333
Q ss_pred CCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301 (608)
Q Consensus 268 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l 301 (608)
++|+.|++++|++++++. +..+++|+.|++
T Consensus 274 --~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L 303 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPS--PDELPQVGNLSL 303 (312)
T ss_dssp --SEEEEEECCSSCCCSCCC--TTTSCEEEEEEC
T ss_pred --CCceEEECCCCCCCCChh--HhhCCCCCEEec
Confidence 788888888888888733 666665554444
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1e-24 Score=211.92 Aligned_cols=171 Identities=25% Similarity=0.434 Sum_probs=119.0
Q ss_pred CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302 (608)
Q Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~ 302 (608)
+++.|++++|.++++.+..|.++++|++|+|++|+++++++..|..+++|+.|++++|+++++++..|..+++|+.|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L- 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL- 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC-
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc-
Confidence 4555555555555555555555556666666666665555555555666666666666666555555555554443333
Q ss_pred CCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChh
Q psy3330 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR 382 (608)
Q Consensus 303 ~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~ 382 (608)
++|++++++ +.
T Consensus 115 --------------------------------------------~~N~l~~~~-------------------------~~ 125 (251)
T 3m19_A 115 --------------------------------------------GGNQLKSLP-------------------------SG 125 (251)
T ss_dssp --------------------------------------------CSSCCCCCC-------------------------TT
T ss_pred --------------------------------------------CCCcCCCcC-------------------------hh
Confidence 344444333 23
Q ss_pred hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccc-cCChHHHHH
Q psy3330 383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCD-CNLLWLWIL 460 (608)
Q Consensus 383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~Cd-C~~~~~~~~ 460 (608)
.|.++++|++|+|++|+ ++.+|...|.++++|+.|+|++|+|+.+++..+ .+++|+.|++++|+|.|+ |.+.|+..|
T Consensus 126 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred HhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 34556777888888887 888888889999999999999999999988655 689999999999999999 999999999
Q ss_pred HHhh
Q psy3330 461 VQLQ 464 (608)
Q Consensus 461 ~~~~ 464 (608)
++..
T Consensus 205 ~~~~ 208 (251)
T 3m19_A 205 IREN 208 (251)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 9854
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=247.11 Aligned_cols=149 Identities=21% Similarity=0.202 Sum_probs=86.3
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 178 (608)
+|++|+|++|.++.+++..|.++++|++|+|++|.+++..+ |..+++|++|++++|.+++++ + .++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~-----~~~------ 100 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-V-----GPS------ 100 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-E-----CTT------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-C-----CCC------
Confidence 45555555555555554455555555555555555544332 444445555555554444332 1 133
Q ss_pred cCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258 (608)
Q Consensus 179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 258 (608)
|+.|++++|.++++++.. +++|+.|++++|.++++.+..|..+++|+.|+|++|.+
T Consensus 101 --------------------L~~L~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 101 --------------------IETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp --------------------CCEEECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred --------------------cCEEECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 444455555444443322 34566777777777766666677777777777777777
Q ss_pred CCCChhhhh-CCCCCCEEeccCCCCCcc
Q psy3330 259 SAIPTKQLS-KLSALVNLDLSGNNFSNI 285 (608)
Q Consensus 259 ~~l~~~~~~-~l~~L~~L~Ls~N~l~~~ 285 (608)
+++++..+. .+++|+.|+|++|.++++
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcChHHHhhhCCcccEEecCCCccccc
Confidence 776555554 677888888888887766
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=2.1e-25 Score=216.84 Aligned_cols=188 Identities=24% Similarity=0.408 Sum_probs=157.7
Q ss_pred CCCCC--ceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccc
Q psy3330 21 ICPSR--CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQ 97 (608)
Q Consensus 21 ~Cp~~--C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l 97 (608)
.||.. |.|......++|++.+++.+|..++++++.|+|++|.++.++. .+.++++|++|+|++|.++.+++..|.++
T Consensus 3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp -CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 58877 9997777899999999999999999999999999999998765 68888999999999999998888888888
Q ss_pred ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 177 (608)
++|++|+|++|+++.+++..|.++++|++|+|++|+++.+++..|.++++|++|++++|.++.++ +..|..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEE
Confidence 99999999999998888888888888888888888888888878888888888888888888876 66788888888888
Q ss_pred ccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
+++|+++.+++..+..+ ++|+.|++++|.+..
T Consensus 162 L~~N~l~~~~~~~~~~l--~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRL--GKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSCCCTTTTTTC--TTCCEEECCSCCBCT
T ss_pred CCCCcCCccCHHHHhCC--CCCCEEEeeCCceeC
Confidence 88888887777666666 446666666666654
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.7e-25 Score=220.56 Aligned_cols=290 Identities=22% Similarity=0.304 Sum_probs=208.5
Q ss_pred EEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC--hhhhCCCCCCcEEEccC
Q psy3330 78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN--KTAFRDTLHLELLILSF 155 (608)
Q Consensus 78 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~ 155 (608)
.++.++++++.+|.... ++|++|++++|+++.+++..|.++++|++|++++|.++.+. +..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 45556666666655322 46777777777777777666777777777777777776543 34555677777777777
Q ss_pred CCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCC
Q psy3330 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235 (608)
Q Consensus 156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 235 (608)
|.+..+ +..+..+++|++|++++|++..++. ...+.. +++|+.|++++|.+.
T Consensus 88 n~i~~l--~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~-l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 88 NGVITM--SSNFLGLEQLEHLDFQHSNLKQMSE-------------------------FSVFLS-LRNLIYLDISHTHTR 139 (306)
T ss_dssp CSEEEE--EEEEETCTTCCEEECTTSEEESSTT-------------------------TTTTTT-CTTCCEEECTTSCCE
T ss_pred CccccC--hhhcCCCCCCCEEECCCCccccccc-------------------------chhhhh-ccCCCEEECCCCcCC
Confidence 777665 3346666666666666655544332 034444 788999999999998
Q ss_pred ccCcccccCCCccCEEeccCCcCCC-CChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCccc
Q psy3330 236 FINESSFVTLRTLHSLDLSNNNLSA-IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314 (608)
Q Consensus 236 ~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~ 314 (608)
...+..|.++++|++|++++|.+++ ..+..+..+++|+.|++++|.++++.+..|..+++|+.|+++++..
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-------- 211 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-------- 211 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc--------
Confidence 8888889999999999999999987 4446899999999999999999999999999999999999975431
Q ss_pred ccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceee
Q psy3330 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVI 394 (608)
Q Consensus 315 ~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~ 394 (608)
.+..+..+. ...++++|++++|++++..+..+..
T Consensus 212 ~~~~~~~~~-------------~l~~L~~L~L~~N~l~~~~~~~~~~--------------------------------- 245 (306)
T 2z66_A 212 FSLDTFPYK-------------CLNSLQVLDYSLNHIMTSKKQELQH--------------------------------- 245 (306)
T ss_dssp SBCCSGGGT-------------TCTTCCEEECTTSCCCBCSSSSCCC---------------------------------
T ss_pred CccChhhcc-------------CcccCCEeECCCCCCcccCHHHHHh---------------------------------
Confidence 111111110 1225689999999998876533210
Q ss_pred cccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccc
Q psy3330 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTV 474 (608)
Q Consensus 395 Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~ 474 (608)
. | ++|++|++++|+|.|+|++.||..|++...
T Consensus 246 ------~---~------------------------------~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~--------- 277 (306)
T 2z66_A 246 ------F---P------------------------------SSLAFLNLTQNDFACTCEHQSFLQWIKDQR--------- 277 (306)
T ss_dssp ------C---C------------------------------TTCCEEECTTCCEECSGGGHHHHHHHHHTG---------
T ss_pred ------h---h------------------------------ccCCEEEccCCCeecccChHHHHHHHHhhh---------
Confidence 0 0 256778999999999999999999998431
Q ss_pred eeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccC
Q psy3330 475 AYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP 529 (608)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~ 529 (608)
......+...|..|++++|.++.++.
T Consensus 278 -----------------------------~~~~~~~~~~C~~p~~~~g~~~~~~~ 303 (306)
T 2z66_A 278 -----------------------------QLLVEVERMECATPSDKQGMPVLSLN 303 (306)
T ss_dssp -----------------------------GGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred -----------------------------hhhccccccccCCchhhCCceeeeec
Confidence 12233467899999999999998774
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-25 Score=237.03 Aligned_cols=212 Identities=24% Similarity=0.264 Sum_probs=178.5
Q ss_pred CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 152 (608)
+++|++|+|++|.++.+++..|..+++|++|+|++|.++++++ |..+++|++|+|++|.++++++ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3489999999999999988899999999999999999987765 8899999999999999887754 37899999
Q ss_pred ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232 (608)
Q Consensus 153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 232 (608)
+++|.+.++. +. .+++|+.|++++|.++++++..+..+ ++|+.|++++|.+++..+..+...+++|+.|++++|
T Consensus 106 L~~N~l~~~~-~~---~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 106 AANNNISRVS-CS---RGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCSSCCCCEE-EC---CCSSCEEEECCSSCCCSGGGBCGGGG--SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CcCCcCCCCC-cc---ccCCCCEEECCCCCCCCCCchhhcCC--CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999998876 33 45789999999999999888778777 569999999999999887777644899999999999
Q ss_pred CCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330 233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301 (608)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l 301 (608)
.++++++ +..+++|+.|+|++|.++++|+. +..+++|+.|++++|.++++++. +..+++|+.|++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l 244 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL 244 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEEC
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEc
Confidence 9998743 34589999999999999999875 88899999999999999987654 666666654444
No 76
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.92 E-value=9.6e-25 Score=207.39 Aligned_cols=199 Identities=24% Similarity=0.428 Sum_probs=141.2
Q ss_pred cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccC
Q psy3330 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303 (608)
Q Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~ 303 (608)
+.+++++|.++.++. .+ ...+++|++++|++++++ ...|..+++|+.|++++|.++++++.+|..+++|+.|++
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L-- 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL-- 88 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC--
Confidence 355556665555433 22 234456666666666653 244666666666677666666666666666655544333
Q ss_pred CCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhh
Q psy3330 304 IPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRA 383 (608)
Q Consensus 304 ~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~ 383 (608)
++|++++++ +..
T Consensus 89 -------------------------------------------s~N~l~~~~-------------------------~~~ 100 (220)
T 2v70_A 89 -------------------------------------------TSNRLENVQ-------------------------HKM 100 (220)
T ss_dssp -------------------------------------------CSSCCCCCC-------------------------GGG
T ss_pred -------------------------------------------CCCccCccC-------------------------HhH
Confidence 444444444 344
Q ss_pred hcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCC-CCCCCCCEEEccCCccccccCChHHHHHHH
Q psy3330 384 FVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASH-FPLERISFLDLSDNPLHCDCNLLWLWILVQ 462 (608)
Q Consensus 384 f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~ 462 (608)
|.++++|++|+|++|+ +..+++..|.++++|+.|+|++|+|+.+++.. ..+++|+.|++++|||.|+|++.|+..|++
T Consensus 101 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred hcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 5556778888888887 77787777999999999999999999986554 479999999999999999999999999987
Q ss_pred hhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330 463 LQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538 (608)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~ 538 (608)
... .......|..|..++|.++.+++.+++.|...
T Consensus 180 ~~~-----------------------------------------~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~~ 214 (220)
T 2v70_A 180 KKR-----------------------------------------IVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDA 214 (220)
T ss_dssp HSC-----------------------------------------CBCCCCEEEESGGGTTEEGGGSCGGGCCCCC-
T ss_pred hcC-----------------------------------------ccccCCccCCChHHCCCChhhCCHHHcccccc
Confidence 321 01235689999999999999999998888654
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.4e-24 Score=211.14 Aligned_cols=202 Identities=26% Similarity=0.344 Sum_probs=163.4
Q ss_pred Cceec--CCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccccccc
Q psy3330 25 RCQCF--DQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLL 101 (608)
Q Consensus 25 ~C~c~--~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~ 101 (608)
.|.|. .....++|++.+++.+|..++++++.|+|++|.++.++ ..+..+++|++|++++|.++.++.. ..+++|+
T Consensus 3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34443 45678999999999999999999999999999999876 4788999999999999999988764 7889999
Q ss_pred EEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCC
Q psy3330 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181 (608)
Q Consensus 102 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 181 (608)
+|++++|+++.++. .+.++++|++|++++|+++.+++..|.++++|++|++++|+++.++ +..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCC
Confidence 99999999998874 6788889999999999999888888888889999999999888887 777888888888888888
Q ss_pred CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCC
Q psy3330 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234 (608)
Q Consensus 182 ~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 234 (608)
+++.+++..+..+ ++|+.|++++|.++.++...+. ..+|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l--~~L~~L~L~~N~l~~ip~~~~~--~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGL--ENLDTLLLQENSLYTIPKGFFG--SHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTC--TTCCEEECCSSCCCCCCTTTTT--TCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCc--CCCCEEECCCCcCCccChhhcc--cccCCeEEeCCCCc
Confidence 8888877766666 4477777777777665544433 44566666665554
No 78
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.3e-24 Score=217.84 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=195.8
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 151 (608)
..++++.|+|++|+++.+++. +..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+ +..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRAL-PASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEE
Confidence 457899999999999999874 667999999999999999776 5789999999999999999976 5678999999999
Q ss_pred EccCCCCCccCchhhh---------cCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCC
Q psy3330 152 ILSFNNITYFEDSEIF---------SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222 (608)
Q Consensus 152 ~L~~n~l~~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 222 (608)
++++|++.+.. |..+ .++++|++|++++|+++.+|.. +..+ ++|++|++++|.++++++ .+.. ++
T Consensus 156 ~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l--~~L~~L~L~~N~l~~l~~-~l~~-l~ 229 (328)
T 4fcg_A 156 SIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANL--QNLKSLKIRNSPLSALGP-AIHH-LP 229 (328)
T ss_dssp EEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGC--TTCCEEEEESSCCCCCCG-GGGG-CT
T ss_pred ECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCC--CCCCEEEccCCCCCcCch-hhcc-CC
Confidence 99998766554 4444 4599999999999999988764 7777 569999999999998765 5766 99
Q ss_pred CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302 (608)
Q Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~ 302 (608)
+|+.|++++|.+.+..+..|.++++|++|++++|++.+..+..+..+++|+.|+|++|++.+..|..+..+++|+.+.+.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99999999999998889999999999999999998877666789999999999999999999889999999999999884
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.8e-24 Score=208.56 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=161.3
Q ss_pred CCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCC-CCCCChhhhcCCCcCcEeeccC-CcCCccCh
Q psy3330 62 RISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-ISALSKDTFKGLKELKTLDLSY-NKISVINK 139 (608)
Q Consensus 62 ~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~ 139 (608)
.++.+|. + .++|++|++++|+++.+++..|.++++|++|++++|+ ++.+++.+|.++++|++|++++ |+++.+++
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3667776 3 3378888888888888888788888888888888886 8888777788888888888887 77877777
Q ss_pred hhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCC-CCccccCCCcc
Q psy3330 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN-LIETVLDNSFP 218 (608)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~ 218 (608)
..|.++++|++|++++|.+++++ . |..+++|+ .++.|++++| .++++++..|.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp--~-~~~l~~L~-----------------------~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFP--D-LTKVYSTD-----------------------IFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCC--C-CTTCCBCC-----------------------SEEEEEEESCTTCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcccc--c-cccccccc-----------------------cccEEECCCCcchhhcCccccc
Confidence 77777777777777777777653 2 44444443 1335666666 66666666666
Q ss_pred ccCCCcc-EEEccCCCCCccCcccccCCCccCEEeccCCc-CCCCChhhhhCC-CCCCEEeccCCCCCccChhhhCCCCC
Q psy3330 219 FTLTNLH-TLALSSNIISFINESSFVTLRTLHSLDLSNNN-LSAIPTKQLSKL-SALVNLDLSGNNFSNIDSVAFKSLFS 295 (608)
Q Consensus 219 ~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~f~~l~~ 295 (608)
. +++|+ .|++++|.++.+++..|.. ++|++|++++|+ ++.+++..|.++ ++|+.|++++|+++++++. .+++
T Consensus 153 ~-l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~ 227 (239)
T 2xwt_C 153 G-LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEH 227 (239)
T ss_dssp T-TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTT
T ss_pred c-hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhcc
Confidence 5 78888 8999999888887777777 899999999995 999998999999 9999999999999998876 4667
Q ss_pred CceeeccCC
Q psy3330 296 LKLVKINLI 304 (608)
Q Consensus 296 L~~L~l~~~ 304 (608)
|+.|+++.+
T Consensus 228 L~~L~l~~~ 236 (239)
T 2xwt_C 228 LKELIARNT 236 (239)
T ss_dssp CSEEECTTC
T ss_pred CceeeccCc
Confidence 888888643
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=7.9e-24 Score=223.41 Aligned_cols=224 Identities=23% Similarity=0.360 Sum_probs=180.8
Q ss_pred CceEEEecCCCCccccCc-c--CccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330 31 QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS 106 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 106 (608)
....++.++..++.++.. + .+++++|+|++|.++.++ ..|.++++|++|+|++|+++.+++..|..+++|++|+|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 346788888888888743 2 368999999999999987 478999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcCCCcCcEeeccC-CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC
Q psy3330 107 YNEISALSKDTFKGLKELKTLDLSY-NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD 185 (608)
Q Consensus 107 ~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 185 (608)
+|.++.+++..|.++++|++|++++ +.+..+++..|.++++|++|++++|.++.++ .+..+++
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~------------- 208 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---NLTPLIK------------- 208 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC---CCTTCSS-------------
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc---ccCCCcc-------------
Confidence 9999999988899999999999988 5566676667777777777777777776653 2444444
Q ss_pred CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330 186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 265 (608)
|+.|++++|.++++.+..|.. +++|+.|++++|.++.+.+..|.++++|+.|+|++|+++.+++..
T Consensus 209 -------------L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 209 -------------LDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp -------------CCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred -------------cCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 555555555555555555655 777888888888888887788888888888888888888888888
Q ss_pred hhCCCCCCEEeccCCCCCc
Q psy3330 266 LSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 266 ~~~l~~L~~L~Ls~N~l~~ 284 (608)
|..+++|+.|+|++|++..
T Consensus 275 ~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSSCTTCCEEECCSSCEEC
T ss_pred hccccCCCEEEcCCCCccC
Confidence 8888889999999888764
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=204.25 Aligned_cols=186 Identities=26% Similarity=0.360 Sum_probs=155.9
Q ss_pred CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL 100 (608)
Q Consensus 22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L 100 (608)
||..|.|. +..++|++.+++++|..+++++++|++++|.++.++. .+..+++|++|++++|+++.+++..|..+++|
T Consensus 1 Cp~~C~C~--~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 1 CPSRCSCS--GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp CCTTCEEE--TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEEC--CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence 99999995 5689999999999999999999999999999998876 56889999999999999999888888889999
Q ss_pred cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180 (608)
Q Consensus 101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 180 (608)
++|++++|+++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|.+++++ +..|..+++|++|++++
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecC
Confidence 99999999999888888888999999999999998888888888888999999888888876 66688888888888888
Q ss_pred CCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccc
Q psy3330 181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219 (608)
Q Consensus 181 n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 219 (608)
|.+.. .+ +.++.|++..|.+++..+..+..
T Consensus 158 N~~~~-------~~--~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 158 NPWDC-------TC--PGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCBCC-------CT--TTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCeec-------CC--CCHHHHHHHHHhCCceeeccCcc
Confidence 86542 12 34667777777777666655543
No 82
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.91 E-value=3.3e-24 Score=203.64 Aligned_cols=164 Identities=32% Similarity=0.490 Sum_probs=148.2
Q ss_pred cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccc
Q psy3330 19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQ 97 (608)
Q Consensus 19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l 97 (608)
+..||..|.|.. ..++|++.+++++|..+++++++|++++|.|+.++. .|..+++|++|+|++|+++.+.+..|.++
T Consensus 2 ~~~CP~~C~C~~--~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 2 SLHCPAACTCSN--NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp CCCSCTTSEEET--TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCCCCEECC--CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence 468999999964 589999999999999999999999999999999876 78899999999999999999988899999
Q ss_pred ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 177 (608)
++|++|+|++|.|+.+++..|.++++|++|+|++|+++.+++..|.++++|++|+|++|.++.+. +..|..+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEE
Confidence 99999999999999999888899999999999999999998888999999999999999999887 67788888888888
Q ss_pred ccCCCCCC
Q psy3330 178 LDNNQILD 185 (608)
Q Consensus 178 L~~n~l~~ 185 (608)
+++|.+..
T Consensus 159 L~~N~~~c 166 (220)
T 2v9t_B 159 LAQNPFIC 166 (220)
T ss_dssp CCSSCEEC
T ss_pred eCCCCcCC
Confidence 88887653
No 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1e-23 Score=223.26 Aligned_cols=224 Identities=26% Similarity=0.379 Sum_probs=179.4
Q ss_pred CceEEEecCCCCccccCc-c--CccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330 31 QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS 106 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls 106 (608)
....++.++..++.++.. + .+++++|+|++|.++.++ ..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 456788888888888543 3 368999999999999987 588999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcCCCcCcEeeccC-CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC
Q psy3330 107 YNEISALSKDTFKGLKELKTLDLSY-NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD 185 (608)
Q Consensus 107 ~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 185 (608)
+|.++.+++..|.++++|++|++++ |.+..+++..|.++++|++|++++|.++.++ .+..+++|++|++++|.+.+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcc
Confidence 9999999999999999999999998 5677777777888888888888888877653 24555555555555555544
Q ss_pred CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330 186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ 265 (608)
Q Consensus 186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 265 (608)
+.+..|.. +++|+.|++++|.++.+.+..|.++++|+.|+|++|+++++++..
T Consensus 233 --------------------------~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 233 --------------------------IRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp --------------------------ECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred --------------------------cCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 44444554 666777777777777777777777788888888888888888777
Q ss_pred hhCCCCCCEEeccCCCCCc
Q psy3330 266 LSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 266 ~~~l~~L~~L~Ls~N~l~~ 284 (608)
|..+++|+.|+|++|++..
T Consensus 286 ~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp STTCTTCCEEECCSSCEEC
T ss_pred hccccCCCEEEccCCCcCC
Confidence 7888888888888887764
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=2.3e-24 Score=220.26 Aligned_cols=238 Identities=21% Similarity=0.292 Sum_probs=202.8
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC-CCChhhhcCCCcCcE-eeccC
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKT-LDLSY 131 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~-L~Ls~ 131 (608)
++++.++++++.+|..+ .+++++|+|++|+|+.|++++|+++++|++|+|++|++. .+++++|.+++++++ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45788999999999876 468999999999999999999999999999999999985 577788999999776 66778
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC-CCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN-NQILDVPNNVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
|+++.+++..|.++++|++|++++|++..++ +..+....++..+++.+ +++..++...|..+. ..++.|++++|.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-SSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccccccccchhhcc-hhhhhhcccccccc
Confidence 9999999999999999999999999999987 66677778888999865 688888888887765 56899999999999
Q ss_pred cccCCCccccCCCccEEEcc-CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccC-CCCCccChh
Q psy3330 211 TVLDNSFPFTLTNLHTLALS-SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG-NNFSNIDSV 288 (608)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~ 288 (608)
.+++..|. ..+++.+++. +|.++.+++..|.++++|++|++++|+++.+|+..+. +|+.|.+.+ +.++.+++
T Consensus 168 ~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 168 EIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp EECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-
T ss_pred CCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-
Confidence 99888886 4689999997 4789999888999999999999999999999976655 555555544 44666653
Q ss_pred hhCCCCCCceeecc
Q psy3330 289 AFKSLFSLKLVKIN 302 (608)
Q Consensus 289 ~f~~l~~L~~L~l~ 302 (608)
+..+++|+.+++.
T Consensus 242 -l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 -LEKLVALMEASLT 254 (350)
T ss_dssp -TTTCCSCCEEECS
T ss_pred -chhCcChhhCcCC
Confidence 7788999998884
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.91 E-value=1.9e-24 Score=221.78 Aligned_cols=193 Identities=31% Similarity=0.433 Sum_probs=164.1
Q ss_pred cccccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccc-cCCCccEEEeeCCCCcccCcc
Q psy3330 15 TKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLS-FYIELRSLDLSVNKINVLGSH 92 (608)
Q Consensus 15 ~~~~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~-~~~~L~~L~Ls~n~l~~i~~~ 92 (608)
+......||..|.|.. ..++|++.+++.+|..+++.++.|+|++|.|+.++. .+. ++++|++|+|++|+|+.+++.
T Consensus 5 ~~~~~~~Cp~~C~C~~--~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 82 (361)
T 2xot_A 5 SGRSVVSCPANCLCAS--NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82 (361)
T ss_dssp --CCCTTCCTTCEEET--TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT
T ss_pred cCCcCCCCCCCCEECC--CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh
Confidence 3445678999999974 589999999999999999999999999999999876 455 899999999999999999999
Q ss_pred cccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhh---cC
Q psy3330 93 NFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF---SS 169 (608)
Q Consensus 93 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~ 169 (608)
.|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+.+..|.++++|+.|+|++|.++.++ +..| ..
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~ 161 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNK 161 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCccc
Confidence 9999999999999999999999888999999999999999999998899999999999999999999987 6666 56
Q ss_pred CCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330 170 LKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 170 l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~ 210 (608)
+++|+.|+|++|+++.++...+..++...++.|++.+|.+.
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88899999999988888876666653211356677776654
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=199.17 Aligned_cols=164 Identities=26% Similarity=0.416 Sum_probs=149.1
Q ss_pred cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc--ccccCCCccEEEeeCCCCcccCcccccc
Q psy3330 19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY--TLSFYIELRSLDLSVNKINVLGSHNFEY 96 (608)
Q Consensus 19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~--~~~~~~~L~~L~Ls~n~l~~i~~~~f~~ 96 (608)
...||..|.|.. ..++|++..++.+|..+++.+++|+|++|.++.+++ .+..+++|++|+|++|.|+.+++..|.+
T Consensus 2 ~~~CP~~C~C~~--~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 2 SLACPEKCRCEG--TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79 (220)
T ss_dssp --CCCTTCEEET--TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCCCCCEECC--CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence 467999999964 489999999999999999999999999999999853 5889999999999999999999999999
Q ss_pred cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176 (608)
Q Consensus 97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 176 (608)
+++|++|+|++|.++.+++..|.++++|++|+|++|+++++.+..|.++++|++|+|++|.++++. +..|..+++|+.|
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEE
Confidence 999999999999999999989999999999999999999998899999999999999999999987 7889999999999
Q ss_pred EccCCCCCC
Q psy3330 177 KLDNNQILD 185 (608)
Q Consensus 177 ~L~~n~l~~ 185 (608)
++++|.+..
T Consensus 159 ~L~~N~l~c 167 (220)
T 2v70_A 159 NLLANPFNC 167 (220)
T ss_dssp ECCSCCEEC
T ss_pred EecCcCCcC
Confidence 999988764
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3e-24 Score=211.28 Aligned_cols=180 Identities=25% Similarity=0.367 Sum_probs=93.9
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 151 (608)
.+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++++++..|.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3444555555555544433 2444455555555555544432 34444555555555555544444444444445555
Q ss_pred EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccC
Q psy3330 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231 (608)
Q Consensus 152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 231 (608)
++++|.++++. +..|..+++ |++|++++|.++++++..|.. +++|+.|++++
T Consensus 115 ~L~~n~l~~~~-~~~~~~l~~--------------------------L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~ 166 (272)
T 3rfs_A 115 VLVENQLQSLP-DGVFDKLTN--------------------------LTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSY 166 (272)
T ss_dssp ECTTSCCCCCC-TTTTTTCTT--------------------------CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCS
T ss_pred ECCCCcCCccC-HHHhccCCC--------------------------CCEEECCCCccCccCHHHhcc-CccCCEEECCC
Confidence 55544444443 333444444 455555555554444444444 55566666666
Q ss_pred CCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCC
Q psy3330 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFS 283 (608)
Q Consensus 232 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 283 (608)
|.++++.+..|.++++|++|++++|+++++++..+..+++|+.|++++|++.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 6655555555555666666666666666666555566666666666666554
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.90 E-value=6.9e-24 Score=217.54 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=58.5
Q ss_pred hhcCCcccceeecccCccccccCcccC---CCCCCCCEEEcCCCcccccCCCCC-CCCC--CCEEEccCCccccccCChH
Q psy3330 383 AFVDNIQLETVIINENMNLKQLPSKLF---QGNTNLKSVSLKGNSLSHLEASHF-PLER--ISFLDLSDNPLHCDCNLLW 456 (608)
Q Consensus 383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f---~~l~~L~~L~L~~N~l~~l~~~~~-~l~~--L~~L~L~~N~~~CdC~~~~ 456 (608)
.|.++++|++|+|++|+ +..+|..+| ..+++|+.|+|++|+|+.+|...+ .++. ++.|+|++|||.|||++.|
T Consensus 131 ~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred HhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 34445666666777776 777777766 568889999999999998886543 3554 4789999999999999988
Q ss_pred H-HHHHH
Q psy3330 457 L-WILVQ 462 (608)
Q Consensus 457 ~-~~~~~ 462 (608)
+ ..|..
T Consensus 210 ~~~~~~~ 216 (361)
T 2xot_A 210 LFSHWQY 216 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6 56765
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.5e-23 Score=202.88 Aligned_cols=206 Identities=24% Similarity=0.336 Sum_probs=159.9
Q ss_pred CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 129 (608)
.++++.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++..|.++++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 368999999999998876 4788999999999999999874 6889999999999999999999988999999999999
Q ss_pred cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI 209 (608)
Q Consensus 130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l 209 (608)
++|+++++++..|.++++|++|++++|.+++++ +..|..+++|++|++++|+++.+++..+..+ ++|+.|++++|.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l 193 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPEGVFDKL--TQLKDLRLYQNQL 193 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCHHHhcCC--ccCCEEECCCCcC
Confidence 999999999989999999999999999999887 7778888999999998888887776655554 3355555555555
Q ss_pred ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhh
Q psy3330 210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA 289 (608)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 289 (608)
+++++ ..|..+++|+.|++++|.+.. .+++|+.|+++.|.+++..|..
T Consensus 194 ~~~~~-------------------------~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 194 KSVPD-------------------------GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCCCT-------------------------TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred CccCH-------------------------HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 54444 444445555555555554432 2345556666666666655554
Q ss_pred hCCC
Q psy3330 290 FKSL 293 (608)
Q Consensus 290 f~~l 293 (608)
++.+
T Consensus 242 ~~~~ 245 (272)
T 3rfs_A 242 AGSV 245 (272)
T ss_dssp TSCB
T ss_pred cccc
Confidence 4443
No 90
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=190.18 Aligned_cols=174 Identities=29% Similarity=0.515 Sum_probs=137.7
Q ss_pred CEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccc
Q psy3330 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIP 328 (608)
Q Consensus 249 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~ 328 (608)
+.+++++|+++.+|... .++|+.|++++|.++.++ ..|..+++|+.|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L----------------------------- 59 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLI----------------------------- 59 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEE-----------------------------
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEE-----------------------------
Confidence 56788888888887532 257888888888887665 456666666544
Q ss_pred cccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCccc
Q psy3330 329 LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKL 408 (608)
Q Consensus 329 ~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~ 408 (608)
++++|+|++++ +.+|.++++|++|+|++|+ ++.++..+
T Consensus 60 ----------------~Ls~N~i~~i~-------------------------~~~f~~l~~L~~L~Ls~N~-l~~i~~~~ 97 (193)
T 2wfh_A 60 ----------------DLSNNRISTLS-------------------------NQSFSNMTQLLTLILSYNR-LRCIPPRT 97 (193)
T ss_dssp ----------------ECCSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSC-CCBCCTTT
T ss_pred ----------------ECCCCcCCEeC-------------------------HhHccCCCCCCEEECCCCc-cCEeCHHH
Confidence 44555555544 4556777899999999997 88999888
Q ss_pred CCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCC
Q psy3330 409 FQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPG 487 (608)
Q Consensus 409 f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (608)
|.++++|+.|+|++|+|+.+|+..+ .+++|+.|++++|||.|||++.||..|++...
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~---------------------- 155 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEY---------------------- 155 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSS----------------------
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhcc----------------------
Confidence 9999999999999999999999866 68999999999999999999999999987421
Q ss_pred CccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330 488 TTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538 (608)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~ 538 (608)
.......|++|+.++|+.+.+++.+.+.|...
T Consensus 156 -------------------~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~~ 187 (193)
T 2wfh_A 156 -------------------KEPGIARCAGPGEMADKLLLTTPSKKFTCAAA 187 (193)
T ss_dssp -------------------CCCSCCBEEESGGGTTCBTTTSCGGGCCC---
T ss_pred -------------------CCCCCcCcCCchHHCCCCcccCChHHeeehhh
Confidence 11235689999999999999999988877653
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.9e-24 Score=237.37 Aligned_cols=246 Identities=16% Similarity=0.123 Sum_probs=145.4
Q ss_pred ccccEEEeccCCC----ccccc------------ccccCCCccEEEeeCCCCcccCcccccc-cc-cccEEEccCCC-CC
Q psy3330 51 PEVQTIILRENRI----SNVHY------------TLSFYIELRSLDLSVNKINVLGSHNFEY-QN-KLLNLNISYNE-IS 111 (608)
Q Consensus 51 ~~l~~L~L~~n~i----~~l~~------------~~~~~~~L~~L~Ls~n~l~~i~~~~f~~-l~-~L~~L~Ls~n~-i~ 111 (608)
+++++|+++++.. ..+|. ....+++|++|+|++|.++......+.. ++ +|++|+|++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 5588888876432 11221 1236888888888888777655445544 33 48888888776 21
Q ss_pred CC-ChhhhcCCCcCcEeeccCCcCCccC----hhhhCCCCCCcEEEccCCCCCccC---chhhhcCCCCccEEEccCCCC
Q psy3330 112 AL-SKDTFKGLKELKTLDLSYNKISVIN----KTAFRDTLHLELLILSFNNITYFE---DSEIFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 112 ~~-~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l 183 (608)
.. .+....++++|++|+|++|.+++.. +..+..+++|+.|++++|.+..+. .+..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 10 0112346788888888888776542 224456788888888888876332 134456778888888888877
Q ss_pred CCCCcccccCCCCCCceEEEccCCCCc---cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCC
Q psy3330 184 LDVPNNVLSNLPHQSLHYLYLNENLIE---TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260 (608)
Q Consensus 184 ~~~~~~~~~~l~~~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 260 (608)
.+++ ..+..+ ++|+.|+++..... ......+.. +++|+.+.++++....+ +..+..+++|++|++++|.++.
T Consensus 233 ~~l~-~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 233 LELV-GFFKAA--ANLEEFCGGSLNEDIGMPEKYMNLVF-PRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp GGGH-HHHHHC--TTCCEEEECBCCCCTTCTTSSSCCCC-CTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCH
T ss_pred HHHH-HHHhhh--hHHHhhcccccccccchHHHHHHhhc-cccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCH
Confidence 7655 345555 45777777653221 111223333 56677777766543333 3455566677777777776543
Q ss_pred CCh-hhhhCCCCCCEEeccCCCCCccC-hhhhCCCCCCceeecc
Q psy3330 261 IPT-KQLSKLSALVNLDLSGNNFSNID-SVAFKSLFSLKLVKIN 302 (608)
Q Consensus 261 l~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~l~ 302 (608)
... ..+..+++|+.|+++ +.+.... +..+..+++|+.|+++
T Consensus 308 ~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 221 235666777777776 3333221 2223456667777665
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.8e-24 Score=236.05 Aligned_cols=373 Identities=13% Similarity=0.076 Sum_probs=250.6
Q ss_pred ccccEEEeccCCCcccc-ccccc-CC-CccEEEeeCCC-CcccC-cccccccccccEEEccCCCCCCCCh----hhhcCC
Q psy3330 51 PEVQTIILRENRISNVH-YTLSF-YI-ELRSLDLSVNK-INVLG-SHNFEYQNKLLNLNISYNEISALSK----DTFKGL 121 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~-~~~~~-~~-~L~~L~Ls~n~-l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l 121 (608)
+++++|+|++|.++... ..+.. ++ +|++|++++|. ++... .....++++|++|+|++|.++.... ..+.++
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 68999999999887532 33443 34 49999999886 22211 1123478999999999998765532 345678
Q ss_pred CcCcEeeccCCcCCccCh----hhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC---CCcccccCC
Q psy3330 122 KELKTLDLSYNKISVINK----TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD---VPNNVLSNL 194 (608)
Q Consensus 122 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l 194 (608)
++|++|++++|.++++.. ..+.++++|+.|++++|.+.++ +..+..+++|++|+++...... .....+..+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG--HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH--HHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 999999999999875443 3456789999999999988876 5778899999999998533221 111223444
Q ss_pred CCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCc-ccccCCCccCEEeccCCcCCC-CChhhhhCCCCC
Q psy3330 195 PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSA-IPTKQLSKLSAL 272 (608)
Q Consensus 195 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~l~~L 272 (608)
++|+.|+++++....+ +..+.. +++|++|++++|.++.... ..+..+++|++|+++ +.+.. ..+..+..+++|
T Consensus 270 --~~L~~L~l~~~~~~~l-~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 270 --RKLCRLGLSYMGPNEM-PILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp --TTCCEEEETTCCTTTG-GGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred --ccccccCccccchhHH-HHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 5689999987644333 334444 7899999999998765332 335788999999998 44432 223445778999
Q ss_pred CEEecc-----------CCCCCccChhh-hCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCce
Q psy3330 273 VNLDLS-----------GNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLK 340 (608)
Q Consensus 273 ~~L~Ls-----------~N~l~~~~~~~-f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 340 (608)
+.|+++ .|.++...... +..+++|+.|++.. . .+.+..+..+.. ...+
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~-------~l~~~~~~~l~~------------~~~~ 404 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-S-------DITNESLESIGT------------YLKN 404 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-S-------CCCHHHHHHHHH------------HCCS
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-C-------CccHHHHHHHHh------------hCCC
Confidence 999999 35666443332 45688999998831 1 111111111111 0114
Q ss_pred ecEEecC----CCCCCCcCh-----hhhcccccccccccccCCC-CCcCChhhh-cCCcccceeecccCccccc-cCccc
Q psy3330 341 CDRLDLS----GNNFSNIDS-----VAFKSLFSLKLVKINLIPN-LDSIDQRAF-VDNIQLETVIINENMNLKQ-LPSKL 408 (608)
Q Consensus 341 l~~L~ls----~n~l~~~~~-----~~~~~l~~L~~l~l~~~~~-l~~~~~~~f-~~l~~L~~L~Ls~N~~l~~-lp~~~ 408 (608)
++.|+++ .|.+++.+. ..+.++++|+.|+++++.+ ++......+ ..+++|++|++++|+ ++. -....
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~ 483 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF 483 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHH
Confidence 5788885 778887643 3367789999999976432 443333333 347889999999997 543 22223
Q ss_pred CCCCCCCCEEEcCCCcccc--cCCCCCCCCCCCEEEccCCccccc
Q psy3330 409 FQGNTNLKSVSLKGNSLSH--LEASHFPLERISFLDLSDNPLHCD 451 (608)
Q Consensus 409 f~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~L~~N~~~Cd 451 (608)
+.++++|+.|+|++|.++. ++.....+++|++|++++|+++..
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 5778999999999999872 443334578999999999997654
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=5.1e-22 Score=189.83 Aligned_cols=167 Identities=21% Similarity=0.329 Sum_probs=131.2
Q ss_pred CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302 (608)
Q Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~ 302 (608)
..+.++.+++.+..++... .++|++|+|++|+++++++..|.++++|+.|+|++|+++.+++..|..+++|+.|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L- 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL- 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC-
Confidence 3556777777777765422 367788888888888877777777888888888888887777776776666654444
Q ss_pred CCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChh
Q psy3330 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR 382 (608)
Q Consensus 303 ~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~ 382 (608)
++|++++++ +.
T Consensus 96 --------------------------------------------s~N~l~~l~-------------------------~~ 106 (229)
T 3e6j_A 96 --------------------------------------------GTNQLTVLP-------------------------SA 106 (229)
T ss_dssp --------------------------------------------CSSCCCCCC-------------------------TT
T ss_pred --------------------------------------------CCCcCCccC-------------------------hh
Confidence 555555544 44
Q ss_pred hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHH
Q psy3330 383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWIL 460 (608)
Q Consensus 383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~ 460 (608)
.|..+++|++|+|++|+ ++.+|.. +..+++|+.|+|++|+|+.+++..+ .+++|+.|++++|||.|+|+ +.|+..|
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~ 184 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred HhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence 56667889999999997 8899987 7889999999999999999998755 68999999999999999996 8999999
Q ss_pred HHhh
Q psy3330 461 VQLQ 464 (608)
Q Consensus 461 ~~~~ 464 (608)
+..+
T Consensus 185 ~~~~ 188 (229)
T 3e6j_A 185 VADH 188 (229)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8854
No 94
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.88 E-value=3.6e-22 Score=185.33 Aligned_cols=115 Identities=24% Similarity=0.574 Sum_probs=96.0
Q ss_pred hhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCC-CCCCCCCEEEccCCccccccCChHHHHH
Q psy3330 382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASH-FPLERISFLDLSDNPLHCDCNLLWLWIL 460 (608)
Q Consensus 382 ~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~L~~N~~~CdC~~~~~~~~ 460 (608)
..|.++++|++|+|++|+ ++.++...|.++++|+.|+|++|+|+.+++.. ..+++|++|++++|+|.|+|++.|+..|
T Consensus 72 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~ 150 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW 150 (192)
T ss_dssp TTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred hHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHH
Confidence 344556777888888887 78888888999999999999999999875554 4789999999999999999999999999
Q ss_pred HHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330 461 VQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN 538 (608)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~ 538 (608)
++... ...+...|..|+.++|+.+.+++.+++.|...
T Consensus 151 l~~~~-----------------------------------------~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 151 LRKKS-----------------------------------------LNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp HHHHC-----------------------------------------CSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred HHHcC-----------------------------------------CCCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence 87421 11235689999999999999999999999864
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.2e-23 Score=205.99 Aligned_cols=225 Identities=20% Similarity=0.140 Sum_probs=148.7
Q ss_pred cccEEEeccCCCcc--ccc--ccccCCCccEEEeeCCCCcccCcccc--cccccccEEEccCCCCCCCCh----hhhcCC
Q psy3330 52 EVQTIILRENRISN--VHY--TLSFYIELRSLDLSVNKINVLGSHNF--EYQNKLLNLNISYNEISALSK----DTFKGL 121 (608)
Q Consensus 52 ~l~~L~L~~n~i~~--l~~--~~~~~~~L~~L~Ls~n~l~~i~~~~f--~~l~~L~~L~Ls~n~i~~~~~----~~~~~l 121 (608)
.++.+.+.++.++. +.. .+..+++|++|++++|.+++..+..+ ..+++|++|+|++|.++...+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46777777776653 111 22334568888888888877666666 777888888888888775322 344567
Q ss_pred CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCc---cCchhhhcCCCCccEEEccCCCCCCCCcc---cccCCC
Q psy3330 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSEIFSSLKSLRILKLDNNQILDVPNN---VLSNLP 195 (608)
Q Consensus 122 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~ 195 (608)
++|++|++++|++..+++..|.++++|++|++++|++.+ +..+..+..+++|++|++++|+++.++.. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l- 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG- 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT-
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC-
Confidence 788888888888877777777788888888888887654 22122346677788888888877655432 23344
Q ss_pred CCCceEEEccCCCCccccCCCccccC---CCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCC
Q psy3330 196 HQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272 (608)
Q Consensus 196 ~~~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L 272 (608)
++|++|++++|.+++..+..+.. + ++|++|++++|+++.++. .+ .++|++|++++|+++++|. +..+++|
T Consensus 224 -~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~~lp~-~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L 296 (310)
T 4glp_A 224 -VQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLEQVPK-GL--PAKLRVLDLSSNRLNRAPQ--PDELPEV 296 (310)
T ss_dssp -CCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCCSCCS-CC--CSCCSCEECCSCCCCSCCC--TTSCCCC
T ss_pred -CCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCCchhh-hh--cCCCCEEECCCCcCCCCch--hhhCCCc
Confidence 44777777777777765444443 3 577777777777775533 23 2577777777777777653 5666777
Q ss_pred CEEeccCCCCCc
Q psy3330 273 VNLDLSGNNFSN 284 (608)
Q Consensus 273 ~~L~Ls~N~l~~ 284 (608)
+.|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 777777777654
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.6e-22 Score=201.00 Aligned_cols=196 Identities=26% Similarity=0.378 Sum_probs=133.4
Q ss_pred ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL 150 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 150 (608)
..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++ +.++++|++|++++|+++.++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence 45666777777777777664 36667777777777777776664 677777777777777776652 4667777777
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 230 (608)
|++++|.++.++ .+..+++|++|++++|.++.+++ +..+ ++|+.|++++|.++++.+ +.. +++|+.|+++
T Consensus 112 L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~ 181 (308)
T 1h6u_A 112 LDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGL--TNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKAD 181 (308)
T ss_dssp EECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCCGG--GTT-CTTCCEEECC
T ss_pred EECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc--ccCC--CCccEEEccCCcCCCChh--hcC-CCCCCEEECC
Confidence 777777776653 26677777777777777766654 4455 447777777776666544 444 6777777777
Q ss_pred CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC
Q psy3330 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID 286 (608)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 286 (608)
+|.++++.+ +..+++|++|++++|+++++++ +..+++|+.|++++|++++.+
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 777766543 6667777777777777777663 677777777777777776644
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=5.7e-22 Score=198.55 Aligned_cols=195 Identities=26% Similarity=0.397 Sum_probs=177.0
Q ss_pred CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 129 (608)
.+++++|+++++.++.++ .+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEEC
Confidence 468999999999999987 68899999999999999999887 899999999999999999875 5999999999999
Q ss_pred cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI 209 (608)
Q Consensus 130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l 209 (608)
++|+++.+++ +..+++|++|++++|.++.+. + +..+++|+.|++++|+++.+++ +..+ ++|+.|++++|.+
T Consensus 115 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~l~~n~l 185 (308)
T 1h6u_A 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNIS-P--LAGLTNLQYLSIGNAQVSDLTP--LANL--SKLTTLKADDNKI 185 (308)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G--GGGCTTCCEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCC
T ss_pred CCCCCCCchh--hcCCCCCCEEECCCCccCcCc-c--ccCCCCccEEEccCCcCCCChh--hcCC--CCCCEEECCCCcc
Confidence 9999998854 899999999999999999875 3 8899999999999999998876 6777 5699999999999
Q ss_pred ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCCh
Q psy3330 210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT 263 (608)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 263 (608)
+++.+ +.. +++|+.|++++|.++++. .+..+++|+.|++++|.++..|.
T Consensus 186 ~~~~~--l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 186 SDISP--LAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCGG--GGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CcChh--hcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 98865 665 999999999999999876 38899999999999999988774
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.1e-23 Score=212.94 Aligned_cols=180 Identities=22% Similarity=0.274 Sum_probs=106.4
Q ss_pred EEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCc----ccccccc-cccEEEccCCCCCCCChhhhcCC-----Cc
Q psy3330 55 TIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGS----HNFEYQN-KLLNLNISYNEISALSKDTFKGL-----KE 123 (608)
Q Consensus 55 ~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~ 123 (608)
.++++.|.+++..+ .+...++|++|+|++|.++.++. ..|..++ +|++|+|++|.++...+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777776443 34445558888888888877776 6667777 78888888887777766666554 77
Q ss_pred CcEeeccCCcCCccChhhh----CCC-CCCcEEEccCCCCCccCchhhh----cC-CCCccEEEccCCCCCCCCcccc--
Q psy3330 124 LKTLDLSYNKISVINKTAF----RDT-LHLELLILSFNNITYFEDSEIF----SS-LKSLRILKLDNNQILDVPNNVL-- 191 (608)
Q Consensus 124 L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~~~~~-- 191 (608)
|++|+|++|.++...+..+ ..+ ++|++|++++|.++... +..+ .. .++|++|++++|++.......+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 7777777777776655533 333 67777777777776655 3332 23 2467777777776654332221
Q ss_pred --cCCCCCCceEEEccCCCCccccCCCccc---cC-CCccEEEccCCCCCc
Q psy3330 192 --SNLPHQSLHYLYLNENLIETVLDNSFPF---TL-TNLHTLALSSNIISF 236 (608)
Q Consensus 192 --~~l~~~~L~~L~L~~n~l~~~~~~~~~~---~l-~~L~~L~L~~n~l~~ 236 (608)
...+ .+|++|++++|.+++..+..+.. .. ++|+.|++++|.++.
T Consensus 161 ~l~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 161 ILAAIP-ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHhcCC-ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 2221 24555555555555443322211 02 345555555554443
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-22 Score=208.56 Aligned_cols=222 Identities=22% Similarity=0.254 Sum_probs=137.4
Q ss_pred EEeeCCCCcccCcccccccccccEEEccCCCCCCCCh----hhhcCCC-cCcEeeccCCcCCccChhhhCCC-----CCC
Q psy3330 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK----DTFKGLK-ELKTLDLSYNKISVINKTAFRDT-----LHL 148 (608)
Q Consensus 79 L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L 148 (608)
+++++|++++..+..+...++|++|+|++|.++..++ .+|.+++ +|++|+|++|.++...+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5667777776655555555557777777777777766 5666676 67777777777776666555553 677
Q ss_pred cEEEccCCCCCccCchhh----hcCC-CCccEEEccCCCCCCCCccccc----CCCCCCceEEEccCCCCccccCCCc--
Q psy3330 149 ELLILSFNNITYFEDSEI----FSSL-KSLRILKLDNNQILDVPNNVLS----NLPHQSLHYLYLNENLIETVLDNSF-- 217 (608)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~----~l~~~~L~~L~L~~n~l~~~~~~~~-- 217 (608)
++|++++|.++... +.. +..+ ++|++|++++|+++..+...+. .++ ++|++|++++|.++......+
T Consensus 83 ~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 83 TSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC-TTCCEEECTTSCGGGSCHHHHHH
T ss_pred cEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC-CceeEEEccCCcCCHHHHHHHHH
Confidence 77777777776654 332 3333 6777777777777666654332 212 457777777777764332222
Q ss_pred --cccC-CCccEEEccCCCCCccCcccc----cCC-CccCEEeccCCcCCCCCh----hhhhC-CCCCCEEeccCCCCCc
Q psy3330 218 --PFTL-TNLHTLALSSNIISFINESSF----VTL-RTLHSLDLSNNNLSAIPT----KQLSK-LSALVNLDLSGNNFSN 284 (608)
Q Consensus 218 --~~~l-~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~l~~----~~~~~-l~~L~~L~Ls~N~l~~ 284 (608)
.. . ++|++|++++|.++...+..+ ... ++|++|+|++|+++.... ..+.. .++|+.|+|++|.+++
T Consensus 161 ~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 161 ILAA-IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHhc-CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 22 3 367777777777766554333 233 477777777777766221 23333 3477777777777776
Q ss_pred cChh----hhCCCCCCceeeccC
Q psy3330 285 IDSV----AFKSLFSLKLVKINL 303 (608)
Q Consensus 285 ~~~~----~f~~l~~L~~L~l~~ 303 (608)
.... .+..+++|+.|++++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHHHHHHhcCCCccEEEecc
Confidence 6552 235566777777753
No 100
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=7.6e-22 Score=199.74 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=83.0
Q ss_pred CccccEEEeccCCCcccc-ccccc-CCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCCCCCChhhhcC-----
Q psy3330 50 NPEVQTIILRENRISNVH-YTLSF-YIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEISALSKDTFKG----- 120 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~-~~~~~-~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~----- 120 (608)
..++++|.++++ +.... ..+.. +++|+.|||++|++. ......+. .++.+.+..| .++..+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhccccccc
Confidence 357888888764 22111 12333 778888888888887 44443333 2455555555 566677877
Q ss_pred ---CCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330 121 ---LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180 (608)
Q Consensus 121 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 180 (608)
+++|+.|+|++ .++.++..+|.++++|+.++++.|.+..+. +.+|.++.++..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcc
Confidence 88888888888 788888888888888888888888887776 67777777666665544
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=177.29 Aligned_cols=140 Identities=35% Similarity=0.583 Sum_probs=128.1
Q ss_pred CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNK 99 (608)
Q Consensus 20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~ 99 (608)
..||..|.|.. ..++|++.+++++|..+++++++|++++|.++.+|..+.++++|++|+|++|.|+.+++.+|.++++
T Consensus 2 ~~CP~~C~C~~--~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 2 SRCPTECTCLD--TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp --CCTTCEEET--TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCCEeCC--CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 57999999964 5899999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCcc
Q psy3330 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161 (608)
Q Consensus 100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (608)
|++|+|++|+|+.+++.+|.++++|++|+|++|.++.+++..|..+++|+.|++++|.+...
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999999999999988999999999999999999999888899999999999999987643
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=192.51 Aligned_cols=229 Identities=19% Similarity=0.136 Sum_probs=132.0
Q ss_pred CCcEEEccCCCCCccCch--hhhcCCCCccEEEccCCCCCCCCcccc--cCCCCCCceEEEccCCCCccccC----CCcc
Q psy3330 147 HLELLILSFNNITYFEDS--EIFSSLKSLRILKLDNNQILDVPNNVL--SNLPHQSLHYLYLNENLIETVLD----NSFP 218 (608)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~~~L~~L~L~~n~l~~~~~----~~~~ 218 (608)
.++.+.+.++.+...... ..+..+++|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--LALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--CCCCEEEeecccccchhhhhHHHHhh
Confidence 345555555544322101 112234567778887777776655544 444 446666666666664322 1122
Q ss_pred ccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCC---CCh-hhhhCCCCCCEEeccCCCCCccChh---hhC
Q psy3330 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA---IPT-KQLSKLSALVNLDLSGNNFSNIDSV---AFK 291 (608)
Q Consensus 219 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~f~ 291 (608)
. +++|++|++++|.+..+.+..|.++++|++|++++|++.+ ++. ..+..+++|++|++++|+++.++.. .+.
T Consensus 143 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 L-KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp B-CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred h-ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 2 4555555555555555555555555555555555555433 111 1124455555555555555433321 122
Q ss_pred CCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccc
Q psy3330 292 SLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN 371 (608)
Q Consensus 292 ~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~ 371 (608)
.+++| ++|++++|++++..|..+.
T Consensus 222 ~l~~L---------------------------------------------~~L~Ls~N~l~~~~p~~~~----------- 245 (310)
T 4glp_A 222 AGVQP---------------------------------------------HSLDLSHNSLRATVNPSAP----------- 245 (310)
T ss_dssp HTCCC---------------------------------------------SSEECTTSCCCCCCCSCCS-----------
T ss_pred cCCCC---------------------------------------------CEEECCCCCCCccchhhHH-----------
Confidence 23333 3344455555554322221
Q ss_pred cCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330 372 LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450 (608)
Q Consensus 372 ~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C 450 (608)
.+..+++|++|++++|+ ++.+|...+ ++|+.|+|++|+|+.+|. ...+++|+.|++++|+|..
T Consensus 246 -----------~~~~~~~L~~L~Ls~N~-l~~lp~~~~---~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 246 -----------RCMWSSALNSLNLSFAG-LEQVPKGLP---AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -----------SCCCCTTCCCEECCSSC-CCSCCSCCC---SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred -----------hccCcCcCCEEECCCCC-CCchhhhhc---CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 11223799999999998 889998743 799999999999999865 5578999999999999863
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=8.9e-23 Score=224.12 Aligned_cols=349 Identities=13% Similarity=0.063 Sum_probs=191.8
Q ss_pred cCCCccEEEeeCCCCcccCccccc-ccccccEEEccCC-CCCCC-ChhhhcCCCcCcEeeccCCcCCccChhhhC----C
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFE-YQNKLLNLNISYN-EISAL-SKDTFKGLKELKTLDLSYNKISVINKTAFR----D 144 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~ 144 (608)
.+++|++|+|++|.++......+. .+++|++|+|++| .++.. .+..+.++++|++|++++|.++...+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666655544333333 4556666666655 33321 112233556666666666655543332222 4
Q ss_pred CCCCcEEEccCCC--CCccCchhhhcCCCCccEEEccCC-CCCCCCcccccCCCCCCceEEEccCC--------------
Q psy3330 145 TLHLELLILSFNN--ITYFEDSEIFSSLKSLRILKLDNN-QILDVPNNVLSNLPHQSLHYLYLNEN-------------- 207 (608)
Q Consensus 145 l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~L~~n-------------- 207 (608)
+++|+.|++++|. +........+..+++|++|++++| .+..+ +..+..+ ++|+.|++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRA--PQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHC--TTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcC--CcceEcccccccCccchhhHHHHHH
Confidence 4566666666554 111110112233466666666655 22221 1112222 22444443322
Q ss_pred ------------CCcccc----CCCccccCCCccEEEccCCCCCccCc-ccccCCCccCEEeccCCcCCCC-ChhhhhCC
Q psy3330 208 ------------LIETVL----DNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSAI-PTKQLSKL 269 (608)
Q Consensus 208 ------------~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~~l 269 (608)
.+.... +..+.. +++|+.|++++|.++.... ..+..+++|++|++++| ++.. .......+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSV-CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHH-HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHh-hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 111111 112223 6889999999998664322 22457889999999988 4321 11233468
Q ss_pred CCCCEEeccC---------CCCCccChhhh-CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCc
Q psy3330 270 SALVNLDLSG---------NNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339 (608)
Q Consensus 270 ~~L~~L~Ls~---------N~l~~~~~~~f-~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~ 339 (608)
++|+.|++++ +.++......+ ..+++|+.|.+.. .. +....+..+.. ...
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~-------l~~~~~~~l~~------------~~~ 397 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQ-------MTNAALITIAR------------NRP 397 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SC-------CCHHHHHHHHH------------HCT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CC-------cCHHHHHHHHh------------hCC
Confidence 8999998843 45554333333 3478888886632 11 11111111100 011
Q ss_pred eecEEecC--C----CCCCCcChh-----hhcccccccccccccCCCCCcCChhhhcC-CcccceeecccCcccccc-Cc
Q psy3330 340 KCDRLDLS--G----NNFSNIDSV-----AFKSLFSLKLVKINLIPNLDSIDQRAFVD-NIQLETVIINENMNLKQL-PS 406 (608)
Q Consensus 340 ~l~~L~ls--~----n~l~~~~~~-----~~~~l~~L~~l~l~~~~~l~~~~~~~f~~-l~~L~~L~Ls~N~~l~~l-p~ 406 (608)
+++.|+++ + +.+++.+.. .+.++++|+.|+++. .++......+.. +++|+.|++++|. ++.. ..
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~ 474 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH 474 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH
Confidence 45788888 4 667654432 266788999999964 555544444544 7899999999997 5432 22
Q ss_pred ccCCCCCCCCEEEcCCCccccc--CCCCCCCCCCCEEEccCCcc
Q psy3330 407 KLFQGNTNLKSVSLKGNSLSHL--EASHFPLERISFLDLSDNPL 448 (608)
Q Consensus 407 ~~f~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~L~~N~~ 448 (608)
....++++|+.|+|++|.++.. ......+++|++|++++|++
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2225689999999999998732 22333578999999999998
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=1.5e-20 Score=179.61 Aligned_cols=162 Identities=26% Similarity=0.390 Sum_probs=137.8
Q ss_pred CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
......|.|. +..|+|++.+++.+|..+++++++|+|++|.++.++ ..+..+++|++|+|++|+++.+++..|.+++
T Consensus 11 ~~~~~~~~Cs--~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 11 AACPSQCSCS--GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp CCCCTTCEEE--TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCCCEEe--CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 3455678885 457999999999999999999999999999999874 5788899999999999999988888888899
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 178 (608)
+|++|+|++|+|+.+++..|..+++|++|+|++|+++.+ +..+..+++|++|++++|.++.++ +..|..+++|+.|++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEe
Confidence 999999999999988888888888999999999988876 455677888888888888888876 677888888888888
Q ss_pred cCCCCCC
Q psy3330 179 DNNQILD 185 (608)
Q Consensus 179 ~~n~l~~ 185 (608)
++|.+..
T Consensus 167 ~~N~~~c 173 (229)
T 3e6j_A 167 FGNPWDC 173 (229)
T ss_dssp TTSCBCT
T ss_pred eCCCccC
Confidence 8887764
No 105
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.84 E-value=1.1e-19 Score=187.96 Aligned_cols=265 Identities=15% Similarity=0.306 Sum_probs=167.9
Q ss_pred ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175 (608)
Q Consensus 96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 175 (608)
.+..++.+.+. +.++.|...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+. ..+|.++.+|+.
T Consensus 111 ~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~-~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLK-EDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEEC-SSTTTTCTTCCE
T ss_pred ecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEeh-HHHhhCcccCCe
Confidence 34556666664 34666666666664 5667766654 666666666663 566666664 555555 566666666776
Q ss_pred EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255 (608)
Q Consensus 176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 255 (608)
+++..|+++.++..+|.. .+|+.+.+.. .++.+...+|.+ +++|+.+.+..+ ++.+...+|.+ .+|+.+.+ .
T Consensus 185 l~l~~n~l~~I~~~aF~~---~~L~~l~lp~-~l~~I~~~aF~~-~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p 256 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVY---AGIEEVLLPV-TLKEIGSQAFLK-TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-P 256 (401)
T ss_dssp EECTTSCCSEECTTTTTT---CCCSEEECCT-TCCEECTTTTTT-CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-E
T ss_pred eecCCCcceEechhhEee---cccCEEEeCC-chheehhhHhhC-CCCCCEEecCCC-ccCcccccccc-CCccEEEe-C
Confidence 666666666666665552 3466666653 255555555554 555666665543 44555555555 45555555 2
Q ss_pred CcCCCCChhhhhCCCCCCEEeccCCCCC-----ccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccc
Q psy3330 256 NNLSAIPTKQLSKLSALVNLDLSGNNFS-----NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLA 330 (608)
Q Consensus 256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~ 330 (608)
+.++.++..+|.+|++|+.+++.+|.+. .+...+|.+|++|+.+.+
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l----------------------------- 307 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI----------------------------- 307 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC-----------------------------
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe-----------------------------
Confidence 3455555555555555555555554443 344455555555544444
Q ss_pred cccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCC
Q psy3330 331 FSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410 (608)
Q Consensus 331 ~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~ 410 (608)
. +.++.|+..+|.++.+|+.+.|..| +..|+..+|.
T Consensus 308 ----------------------------------------~--~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~ 343 (401)
T 4fdw_A 308 ----------------------------------------P--ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN 343 (401)
T ss_dssp ----------------------------------------C--TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS
T ss_pred ----------------------------------------C--CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC
Confidence 3 4566777788888888999998665 8888888899
Q ss_pred CCCCCCEEEcCCCcccccCCCCC-CC-CCCCEEEccCCcc
Q psy3330 411 GNTNLKSVSLKGNSLSHLEASHF-PL-ERISFLDLSDNPL 448 (608)
Q Consensus 411 ~l~~L~~L~L~~N~l~~l~~~~~-~l-~~L~~L~L~~N~~ 448 (608)
++ +|+.+++++|.+..++...+ .+ ..+..|++-.|..
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 98 99999999998888887776 35 4677888876653
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.6e-20 Score=176.84 Aligned_cols=179 Identities=25% Similarity=0.337 Sum_probs=133.8
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 133 (608)
+.++.+++.++.+|..+ .++|++|++++|+++.+++..|.++++|++|++++|+++.+++..|.++++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46777888888887654 4578888888888888888788888888888888888888887778888888888888888
Q ss_pred CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL 213 (608)
Q Consensus 134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 213 (608)
++.+++..|.++++|++|++++|.++.+. +..|..+++|++|++++|+++++++..+..+ ++|+.|++++|.+.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l~~N~~~~~- 163 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWLHDNPWDCT- 163 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSCCBCCC-
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHhccC--CCccEEEecCCCeecC-
Confidence 88887777888888888888888888776 6667778888888888888877777666666 4477777776654421
Q ss_pred CCCccccCCCccEEEccCCCCCccCcccccCC
Q psy3330 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTL 245 (608)
Q Consensus 214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 245 (608)
+++|+.|++..|.+++..|..++.+
T Consensus 164 -------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 164 -------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -------CCCHHHHHHHHHhCCceeeccCccc
Confidence 4556666666666665555544433
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.7e-21 Score=197.88 Aligned_cols=223 Identities=17% Similarity=0.131 Sum_probs=140.1
Q ss_pred ccccEEEeccCCCcccccccccC--CCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCC-ChhhhcCCCcCcEe
Q psy3330 51 PEVQTIILRENRISNVHYTLSFY--IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL-SKDTFKGLKELKTL 127 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~--~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 127 (608)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++.. .+..+..+++|++|
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 34677888877766 3444555 7788888888887776664 44678888888888877653 44567778888888
Q ss_pred eccCCcCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCccEEEccCC-CCCCC-CcccccCCCCCCceEEEc
Q psy3330 128 DLSYNKISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSLRILKLDNN-QILDV-PNNVLSNLPHQSLHYLYL 204 (608)
Q Consensus 128 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~~~L~~L~L 204 (608)
++++|.++...+..+..+++|++|++++| .++....+..+.++++|++|++++| .++.. .+..+..++ .+|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-ETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC-TTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc-cCCCEEEe
Confidence 88888877666677777888888888888 5664322555777788888888877 66542 122233442 14666666
Q ss_pred cCC--CCc-cccCCCccccCCCccEEEccCCC-CCccCcccccCCCccCEEeccCCcCCCCChh---hhhCCCCCCEEec
Q psy3330 205 NEN--LIE-TVLDNSFPFTLTNLHTLALSSNI-ISFINESSFVTLRTLHSLDLSNNNLSAIPTK---QLSKLSALVNLDL 277 (608)
Q Consensus 205 ~~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~l~~L~~L~L 277 (608)
++| .++ +..+..+.. +++|+.|++++|. ++...+..+..+++|++|++++|. .+.+. .+..+++|+.|++
T Consensus 203 ~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp CSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEec
Confidence 666 333 111223333 5666666666665 444444455556666666666664 22222 3555666666666
Q ss_pred cCC
Q psy3330 278 SGN 280 (608)
Q Consensus 278 s~N 280 (608)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 655
No 108
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.84 E-value=1.5e-19 Score=186.88 Aligned_cols=269 Identities=13% Similarity=0.215 Sum_probs=232.6
Q ss_pred ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL 150 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 150 (608)
..+..++.+.+. ++++.|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 446788888886 46889999999986 7999999866 899999999985 799999996 788999999999999999
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 230 (608)
+++..|.++.++ ...|. ..+|+.+.+.. .+..++..+|..+ .+|+.+++..+ ++.+...+|.+ .+|+.+.+
T Consensus 185 l~l~~n~l~~I~-~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~--~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l- 255 (401)
T 4fdw_A 185 ADLSKTKITKLP-ASTFV-YAGIEEVLLPV-TLKEIGSQAFLKT--SQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL- 255 (401)
T ss_dssp EECTTSCCSEEC-TTTTT-TCCCSEEECCT-TCCEECTTTTTTC--TTCCCEECCTT-CCEECTTTTTT--CCCSEEEE-
T ss_pred eecCCCcceEec-hhhEe-ecccCEEEeCC-chheehhhHhhCC--CCCCEEecCCC-ccCcccccccc--CCccEEEe-
Confidence 999999999997 77787 58999999984 4889999999988 56999999875 78888888886 78999999
Q ss_pred CCCCCccCcccccCCCccCEEeccCCcCC-----CCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330 231 SNIISFINESSFVTLRTLHSLDLSNNNLS-----AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305 (608)
Q Consensus 231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~ 305 (608)
.+.++.+...+|.++++|+.+++.+|.+. .++..+|.+|++|+.+++. +.++.+...+|.+|++|+.+.+.
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp--- 331 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP--- 331 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC---
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC---
Confidence 46688899999999999999999998776 6888999999999999999 56999999999999999988772
Q ss_pred CCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhc
Q psy3330 306 NLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385 (608)
Q Consensus 306 ~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~ 385 (608)
++++.|+..+|.
T Consensus 332 --------------------------------------------------------------------~~l~~I~~~aF~ 343 (401)
T 4fdw_A 332 --------------------------------------------------------------------ANVTQINFSAFN 343 (401)
T ss_dssp --------------------------------------------------------------------TTCCEECTTSSS
T ss_pred --------------------------------------------------------------------ccccEEcHHhCC
Confidence 345566778889
Q ss_pred CCcccceeecccCccccccCcccCCCCC-CCCEEEcCCCcccc
Q psy3330 386 DNIQLETVIINENMNLKQLPSKLFQGNT-NLKSVSLKGNSLSH 427 (608)
Q Consensus 386 ~l~~L~~L~Ls~N~~l~~lp~~~f~~l~-~L~~L~L~~N~l~~ 427 (608)
++ +|+.+++++|. ...++..+|.+++ +++.|++..+.+..
T Consensus 344 ~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 344 NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred CC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHHHHH
Confidence 98 99999999997 8888888899885 78899998887663
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.83 E-value=2e-20 Score=173.51 Aligned_cols=140 Identities=26% Similarity=0.443 Sum_probs=123.6
Q ss_pred CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccccc--cccCCCccEEEeeCCCCcccCcccccccc
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT--LSFYIELRSLDLSVNKINVLGSHNFEYQN 98 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~--~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~ 98 (608)
+||..|.|.. ..++|++.+++++|..++.++++|++++|.++.++.. +..+++|++|+|++|+|+.+.+..|.+++
T Consensus 1 ~CP~~C~C~~--~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 1 DCPAMCHCEG--TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp CCCTTSEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CcCCCCEECC--CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence 5999999964 6899999999999999999999999999999988763 78899999999999999998888888999
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 162 (608)
+|++|+|++|+|+.+++..|.++++|++|+|++|+++++.+..|..+++|++|++++|.+....
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9999999999999888888888889999999999888888888888888888888888887543
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=9.6e-22 Score=203.76 Aligned_cols=215 Identities=20% Similarity=0.170 Sum_probs=119.7
Q ss_pred cccccccCCCccEEEeeCCCCcccCcc----cccccccccEEEccCCCCCCCC---hhh-------hcCCCcCcEeeccC
Q psy3330 66 VHYTLSFYIELRSLDLSVNKINVLGSH----NFEYQNKLLNLNISYNEISALS---KDT-------FKGLKELKTLDLSY 131 (608)
Q Consensus 66 l~~~~~~~~~L~~L~Ls~n~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~~---~~~-------~~~l~~L~~L~Ls~ 131 (608)
+...+..+++|++|+|++|.++...+. .|..+++|++|+|++|.+..+. +.. +..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444555666666667766666654332 2456666667766665444321 212 35666677777777
Q ss_pred CcCCc----cChhhhCCCCCCcEEEccCCCCCccCchhh----hcCC---------CCccEEEccCCCCCC--CCc--cc
Q psy3330 132 NKISV----INKTAFRDTLHLELLILSFNNITYFEDSEI----FSSL---------KSLRILKLDNNQILD--VPN--NV 190 (608)
Q Consensus 132 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~l---------~~L~~L~L~~n~l~~--~~~--~~ 190 (608)
|.++. ..+..+..+++|++|+|++|.+.... +.. +..+ ++|++|++++|+++. ++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA-GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH-HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH-HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 66665 22345566666777777766665332 222 2222 666666666666642 111 12
Q ss_pred ccCCCCCCceEEEccCCCCcc-----ccCCCccccCCCccEEEccCCCCC----ccCcccccCCCccCEEeccCCcCCCC
Q psy3330 191 LSNLPHQSLHYLYLNENLIET-----VLDNSFPFTLTNLHTLALSSNIIS----FINESSFVTLRTLHSLDLSNNNLSAI 261 (608)
Q Consensus 191 ~~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~l 261 (608)
+..+ ++|+.|++++|.++. +.+..+.. +++|+.|++++|.++ ...+..+..+++|++|+|++|.++..
T Consensus 183 l~~~--~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 183 FQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHC--TTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHhC--CCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 3333 346666666666652 22234444 666777777777664 22344556666777777777776653
Q ss_pred ----ChhhhhC--CCCCCEEeccCCCCCc
Q psy3330 262 ----PTKQLSK--LSALVNLDLSGNNFSN 284 (608)
Q Consensus 262 ----~~~~~~~--l~~L~~L~Ls~N~l~~ 284 (608)
.+..+.. +++|+.|+|++|.++.
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 1233422 6677777777777666
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=3.2e-21 Score=199.87 Aligned_cols=246 Identities=22% Similarity=0.203 Sum_probs=189.9
Q ss_pred CCCCccccCcc--CccccEEEeccCCCccc-----ccccccCCCccEEEeeCCCCcccC---ccc-------cccccccc
Q psy3330 39 DAGLEVVPIQL--NPEVQTIILRENRISNV-----HYTLSFYIELRSLDLSVNKINVLG---SHN-------FEYQNKLL 101 (608)
Q Consensus 39 ~~~l~~ip~~~--~~~l~~L~L~~n~i~~l-----~~~~~~~~~L~~L~Ls~n~l~~i~---~~~-------f~~l~~L~ 101 (608)
..++..++..+ .+++++|+|++|.++.. ...+..+++|++|+|++|.+..+. +.. |..+++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 33444444433 36899999999999863 345778999999999998655332 222 46889999
Q ss_pred EEEccCCCCCCC----ChhhhcCCCcCcEeeccCCcCCccChhhhCC----C---------CCCcEEEccCCCCCccCch
Q psy3330 102 NLNISYNEISAL----SKDTFKGLKELKTLDLSYNKISVINKTAFRD----T---------LHLELLILSFNNITYFEDS 164 (608)
Q Consensus 102 ~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----l---------~~L~~L~L~~n~l~~~~~~ 164 (608)
+|+|++|.++.. .+..+..+++|++|+|++|.++...+..+.. + ++|++|++++|.+.....+
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 999999999973 3457888999999999999997654444433 3 8999999999999844324
Q ss_pred ---hhhcCCCCccEEEccCCCCCC-----CCcccccCCCCCCceEEEccCCCCc----cccCCCccccCCCccEEEccCC
Q psy3330 165 ---EIFSSLKSLRILKLDNNQILD-----VPNNVLSNLPHQSLHYLYLNENLIE----TVLDNSFPFTLTNLHTLALSSN 232 (608)
Q Consensus 165 ---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n 232 (608)
..+..+++|++|++++|++.. +.+..+..+ ++|+.|++++|.++ ...+..+.. +++|+.|++++|
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~--~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n 254 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC--TTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTC
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC--CCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCC
Confidence 467789999999999999872 222245566 56999999999996 334456665 899999999999
Q ss_pred CCCcc----Ccccc--cCCCccCEEeccCCcCCC-----CChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330 233 IISFI----NESSF--VTLRTLHSLDLSNNNLSA-----IPTKQLSKLSALVNLDLSGNNFSNIDS 287 (608)
Q Consensus 233 ~l~~~----~~~~~--~~l~~L~~L~Ls~n~l~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 287 (608)
.++.. .+..+ ..+++|++|+|++|.++. ++...+.++++|+.|++++|++++..+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99865 23444 338999999999999998 665444779999999999999998774
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=5e-21 Score=194.43 Aligned_cols=254 Identities=19% Similarity=0.139 Sum_probs=196.2
Q ss_pred CceEEEecCCCCcccc--CccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCccc-CcccccccccccEEEccC
Q psy3330 31 QKLEASCTDAGLEVVP--IQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISY 107 (608)
Q Consensus 31 ~~~~v~C~~~~l~~ip--~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i-~~~~f~~l~~L~~L~Ls~ 107 (608)
.+..++.++..+..-. .-..+.++.|++++|.++..+..+..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 3567777766554211 1123789999999999998877778899999999999998764 445788999999999999
Q ss_pred CCCCCCChhhhcCCCcCcEeeccCC-cCCcc-ChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCC-CccEEEccCCC-
Q psy3330 108 NEISALSKDTFKGLKELKTLDLSYN-KISVI-NKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLK-SLRILKLDNNQ- 182 (608)
Q Consensus 108 n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L~~n~- 182 (608)
|.++...+..+..+++|++|++++| .++.. .+..+.++++|++|++++| .++....+..+..++ +|++|++++|.
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 9998777778999999999999999 67753 3456788999999999999 888643366788999 99999999994
Q ss_pred -CC--CCCcccccCCCCCCceEEEccCCC-CccccCCCccccCCCccEEEccCCC-CCccCcccccCCCccCEEeccCCc
Q psy3330 183 -IL--DVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSFPFTLTNLHTLALSSNI-ISFINESSFVTLRTLHSLDLSNNN 257 (608)
Q Consensus 183 -l~--~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 257 (608)
++ .++ ..+..+ ++|+.|++++|. +++.....+.. +++|+.|++++|. +.......+..+++|++|++++|
T Consensus 208 ~~~~~~l~-~~~~~~--~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 208 NLQKSDLS-TLVRRC--PNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp GSCHHHHH-HHHHHC--TTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred cCCHHHHH-HHHhhC--CCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 43 222 234556 569999999999 77666667776 8999999999995 33222236788999999999999
Q ss_pred CCCCChhhhhCC-CCCCEEeccCCCCCccChhhhCC
Q psy3330 258 LSAIPTKQLSKL-SALVNLDLSGNNFSNIDSVAFKS 292 (608)
Q Consensus 258 l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~f~~ 292 (608)
++ ...+..+ ..+..|++++|++++..+..+..
T Consensus 283 i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 43 3334333 23666778999999988876653
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=4.4e-19 Score=190.60 Aligned_cols=188 Identities=20% Similarity=0.258 Sum_probs=129.3
Q ss_pred CccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEcc
Q psy3330 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILS 154 (608)
Q Consensus 75 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 154 (608)
+|+.|++++|+++++|...+ ++|++|+|++|.|+.++ ..+++|++|++++|+|++++. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 66677777777766665432 56777777777777665 235677777777777776544 443 67777777
Q ss_pred CCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCC
Q psy3330 155 FNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234 (608)
Q Consensus 155 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 234 (608)
+|.+++++ . .+++|+.|++++|.++.+|. .+ ++|+.|++++|.+++++. |. ++|+.|++++|.+
T Consensus 129 ~N~l~~lp-~----~l~~L~~L~Ls~N~l~~lp~----~l--~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTMLP-E----LPALLEYINADNNQLTMLPE----LP--TSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSCCC-C----CCTTCCEEECCSSCCSCCCC----CC--TTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCC
T ss_pred CCcCCCCC-C----cCccccEEeCCCCccCcCCC----cC--CCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCC
Confidence 77777754 2 46777777777777777665 22 457777777777777544 32 6777788888877
Q ss_pred CccCcccccCCCcc-------CEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCC
Q psy3330 235 SFINESSFVTLRTL-------HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF 294 (608)
Q Consensus 235 ~~~~~~~~~~l~~L-------~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~ 294 (608)
+.++. |.. +| +.|+|++|+++.+|.. +..+++|+.|+|++|++++..+..+..+.
T Consensus 193 ~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 193 ESLPA--VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCC--CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred Cchhh--HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 76644 433 66 9999999999998864 55599999999999999988777765543
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=8.4e-20 Score=184.69 Aligned_cols=240 Identities=16% Similarity=0.203 Sum_probs=186.8
Q ss_pred CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccc--------cccccEEEccCCCCCCCChhhhcCC
Q psy3330 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEY--------QNKLLNLNISYNEISALSKDTFKGL 121 (608)
Q Consensus 50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~--------l~~L~~L~Ls~n~i~~~~~~~~~~l 121 (608)
.++++.|+|++|++......-+.++.++.+.+..| .|+..+|.+ +++|+.|+|.+ .++.+++.+|.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 46799999999999832221122333455555555 677788888 99999999988 8888988899999
Q ss_pred CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCC----CCCccCchhhhcCCCCcc-EEEccCCCCCCCCcc-------
Q psy3330 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFN----NITYFEDSEIFSSLKSLR-ILKLDNNQILDVPNN------- 189 (608)
Q Consensus 122 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~------- 189 (608)
++|+.+++++|.+..+.+.+|.++.++..+.+..+ ....+. ...|.++..|+ .+.+.... .++..
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~-~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~ 200 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE-HFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQ 200 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT-TSCEEESCCCEEEEEECTTC--CHHHHHHHTTCC
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc-ccccccccccceeEEecCCC--cHHHHHhhcccC
Confidence 99999999999988888889988887777776652 222333 44566666665 34433211 01100
Q ss_pred -------------------cc-cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccC
Q psy3330 190 -------------------VL-SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLH 249 (608)
Q Consensus 190 -------------------~~-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 249 (608)
.+ ..+ ++|+.+++++|.++.+++..|.+ +++|+.+++.+| ++.+.+.+|.++++|+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~--~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYM--PNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHC--TTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccccceEEEeeeecHHHHHHHHHhc--CCCeEEECCCCCcceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 00 013 56999999999999999999998 999999999998 8899999999999999
Q ss_pred -EEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330 250 -SLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301 (608)
Q Consensus 250 -~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l 301 (608)
.+++.+ .++.+++.+|.+|++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999998 899999999999999999999999999999999999999998864
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-19 Score=164.84 Aligned_cols=139 Identities=27% Similarity=0.433 Sum_probs=123.0
Q ss_pred CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL 100 (608)
Q Consensus 22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L 100 (608)
||..|.|. +..++|++.+++.+|..+++++++|++++|.++.++. .+..+++|++|++++|+++.+++..|..+++|
T Consensus 1 Cp~~C~C~--~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 1 CPSRCSCS--GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78 (177)
T ss_dssp CCTTCEEE--TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEeC--CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc
Confidence 99999995 5689999999999999999999999999999998876 56888999999999999999888888889999
Q ss_pred cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162 (608)
Q Consensus 101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 162 (608)
++|++++|.++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|.+....
T Consensus 79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999999999888888888899999999999998888877888888999999888887653
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1.6e-21 Score=214.10 Aligned_cols=374 Identities=13% Similarity=0.072 Sum_probs=239.6
Q ss_pred cEEEeccCCCcccccccccCCCccEEEeeCCC-CcccC--------------cccccccccccEEEccCCCCCCCChhhh
Q psy3330 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNK-INVLG--------------SHNFEYQNKLLNLNISYNEISALSKDTF 118 (608)
Q Consensus 54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~-l~~i~--------------~~~f~~l~~L~~L~Ls~n~i~~~~~~~~ 118 (608)
+.++++..........+..+++|+.|+++++. +..+. ...+..+++|++|+|++|.++......+
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 34555444333333456778888899988874 22221 1123467899999999999886655556
Q ss_pred c-CCCcCcEeeccCC-cCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhh----cCCCCccEEEccCCCCCCCCcccc
Q psy3330 119 K-GLKELKTLDLSYN-KISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIF----SSLKSLRILKLDNNQILDVPNNVL 191 (608)
Q Consensus 119 ~-~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~ 191 (608)
. .+++|++|++++| .++... +..+.++++|++|++++|.+++.. +..+ ..+++|++|++++|. ..+....+
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 4 6899999999999 555422 234457899999999999977654 3333 367799999999987 33433322
Q ss_pred ----cCCCCCCceEEEccCC-CCccccCCCccccCCCccEEEccCCC--------------------------CCccCc-
Q psy3330 192 ----SNLPHQSLHYLYLNEN-LIETVLDNSFPFTLTNLHTLALSSNI--------------------------ISFINE- 239 (608)
Q Consensus 192 ----~~l~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~--------------------------l~~~~~- 239 (608)
..+ ++|+.|++++| .+.+ .+..+.. +++|+.|++..+. +.....
T Consensus 204 ~~l~~~~--~~L~~L~L~~~~~~~~-l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 204 ERLVTRC--PNLKSLKLNRAVPLEK-LATLLQR-APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHHHC--TTCCEEECCTTSCHHH-HHHHHHH-CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHHHhC--CCCcEEecCCCCcHHH-HHHHHhc-CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 234 56999999998 3333 3333444 7778888765442 111111
Q ss_pred ---ccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCCCCCccChhh-hCCCCCCceeeccCCCCCC-CCCcc
Q psy3330 240 ---SSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLD-SIDQP 313 (608)
Q Consensus 240 ---~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~l~~~~~l~-~~~~~ 313 (608)
..+..+++|++|++++|.++... ...+..+++|+.|++++| +....... ...+++|+.|++..+.... ...+.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 22235789999999999976422 234668999999999988 44222222 2458899999984321000 00000
Q ss_pred cccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhc-ccccccccccc-----cCCCCCcCCh-----h
Q psy3330 314 LSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFK-SLFSLKLVKIN-----LIPNLDSIDQ-----R 382 (608)
Q Consensus 314 ~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~l~l~-----~~~~l~~~~~-----~ 382 (608)
........+.. +..+++.|+++.|++++.....+. .+++|+.|++. .++.++..+. .
T Consensus 359 l~~~~l~~l~~------------~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 359 LTEQGLVSVSM------------GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CCHHHHHHHHH------------HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred CCHHHHHHHHH------------hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 10000000000 012458889999999886666665 58899999998 4566664432 2
Q ss_pred hhcCCcccceeecccCccccccCcccCC-CCCCCCEEEcCCCcccccC-CCC-CCCCCCCEEEccCCcc
Q psy3330 383 AFVDNIQLETVIINENMNLKQLPSKLFQ-GNTNLKSVSLKGNSLSHLE-ASH-FPLERISFLDLSDNPL 448 (608)
Q Consensus 383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~-~l~~L~~L~L~~N~l~~l~-~~~-~~l~~L~~L~L~~N~~ 448 (608)
.+.++++|+.|+++++ ++......+. .+++|+.|+|++|.++... ..+ ..+++|++|+|++|++
T Consensus 427 l~~~~~~L~~L~L~~~--l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHCTTCCEEECCSS--CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHhhCCCccEEeecCc--ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 2667899999999873 4332222233 3789999999999987322 112 2478999999999998
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.8e-19 Score=190.30 Aligned_cols=187 Identities=25% Similarity=0.331 Sum_probs=124.6
Q ss_pred cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330 52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 131 (608)
+++.|++++|.++.+|..+ .++|++|+|++|+|+.+| ..+++|++|+|++|.|+.++. |.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 5667777777777666644 256777777777777666 235677777777777777654 443 677777777
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
|++++++. .+++|+.|++++|.+++++ . .+++|++|++++|.++.+|. +. ++|+.|++++|.++.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~----~l~~L~~L~Ls~N~L~~lp~--l~----~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLP-E----LPTSLEVLSVRNNQLTFLPE--LP----ESLEALDVSTNLLES 194 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCC--CC----TTCCEEECCSSCCSS
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCC-C----cCCCcCEEECCCCCCCCcch--hh----CCCCEEECcCCCCCc
Confidence 77776544 4567777777777777654 2 45677777777777777665 32 447777777777776
Q ss_pred ccCCCccccCCCc-------cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCC
Q psy3330 212 VLDNSFPFTLTNL-------HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL 269 (608)
Q Consensus 212 ~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l 269 (608)
++. +.. +| +.|++++|.++.++. .+..+++|+.|+|++|.+++..+..+..+
T Consensus 195 lp~--~~~---~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA--VPV---RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC--CC-----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh--HHH---hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 554 332 45 888888888887644 44458888888888888887666666554
No 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3.3e-19 Score=176.82 Aligned_cols=175 Identities=29% Similarity=0.351 Sum_probs=110.5
Q ss_pred cccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330 95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174 (608)
Q Consensus 95 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 174 (608)
..+++|++|++++|.+..++ .+..+++|++|++++|+++++++ +.++++|++|++++|.++.++ .+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS---SLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG---GGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh---hhccCCCCC
Confidence 34555555555555555553 25555556666666665555543 555566666666666555542 255566666
Q ss_pred EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEecc
Q psy3330 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254 (608)
Q Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 254 (608)
+|++++|++..++ .+..+ ++|+.|++++|.++++ ..+.. +++|+.|++++|.++++.+ +..+++|+.|+++
T Consensus 116 ~L~L~~n~i~~~~--~l~~l--~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 116 SLSLEHNGISDIN--GLVHL--PQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp EEECTTSCCCCCG--GGGGC--TTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred EEECCCCcCCCCh--hhcCC--CCCCEEEccCCcCCcc--hhhcc-CCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 6666666665542 24444 3466666666666655 34444 7778888888887777654 7778888888888
Q ss_pred CCcCCCCChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS 287 (608)
Q Consensus 255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 287 (608)
+|++++++ .+..+++|+.|++++|+++..+.
T Consensus 187 ~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 187 KNHISDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 88888875 37788888888888888776543
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.79 E-value=1.4e-18 Score=180.28 Aligned_cols=334 Identities=19% Similarity=0.286 Sum_probs=238.3
Q ss_pred Cccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhh
Q psy3330 63 ISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141 (608)
Q Consensus 63 i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 141 (608)
++.|.. +|.++.+|+.+.+. +.++.|+..+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 556664 78999999999997 4599999999999999999999754 88899999999999999888764 77777888
Q ss_pred hCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccC
Q psy3330 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221 (608)
Q Consensus 142 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l 221 (608)
|.++..++..... ....+. ..+|.++.+|+.+.+..+ +..++..+|..+ .+|+.+.+..+ ++.+....|.+ +
T Consensus 136 F~~~~~~~~~~~~--~~~~i~-~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c--~~L~~i~l~~~-~~~I~~~~F~~-~ 207 (394)
T 4fs7_A 136 FKGCDFKEITIPE--GVTVIG-DEAFATCESLEYVSLPDS-METLHNGLFSGC--GKLKSIKLPRN-LKIIRDYCFAE-C 207 (394)
T ss_dssp TTTCCCSEEECCT--TCCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTC--TTCCBCCCCTT-CCEECTTTTTT-C
T ss_pred eecccccccccCc--cccccc-hhhhcccCCCcEEecCCc-cceeccccccCC--CCceEEEcCCC-ceEeCchhhcc-c
Confidence 8887654443332 233444 678999999999999754 566888888887 56998888766 77777888887 8
Q ss_pred CCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301 (608)
Q Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l 301 (608)
..|+.+.+..+... +... +....+|+.+.+.. .++.+...+|.++..++.+.+..+ ...+...+|..+..++.+..
T Consensus 208 ~~L~~i~~~~~~~~-i~~~-~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYY-LGDF-ALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCE-ECTT-TTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceE-eehh-hcccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceecc
Confidence 88888887765432 3233 33456888888864 466777778899999999999865 55677788888888887766
Q ss_pred cCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCCh
Q psy3330 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ 381 (608)
Q Consensus 302 ~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~ 381 (608)
.... ++.. ......+++.+.+.+ .++.+...+|.++++|+.+++. +.++.|+.
T Consensus 284 ~~~~------------i~~~------------~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~ 336 (394)
T 4fs7_A 284 GSVI------------VPEK------------TFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLP--YLVEEIGK 336 (394)
T ss_dssp CSSE------------ECTT------------TTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCC--TTCCEECT
T ss_pred Ccee------------eccc------------ccccccccccccccc-ccceechhhhcCCCCCCEEEeC--CcccEEhH
Confidence 3110 0000 001111335555544 3666777777777777777775 45677777
Q ss_pred hhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEE
Q psy3330 382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFL 441 (608)
Q Consensus 382 ~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L 441 (608)
.+|.++.+|+.+.+..+ +..|+..+|.++++|+.+++..+ ++.+...+..+.+|+.+
T Consensus 337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 77777777777777655 67777777777777777777543 44454444455555543
No 120
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.1e-18 Score=173.05 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=156.1
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
+..+.+..+.++.+. .+..+++|+.|++++|.++.++ .+..+++|++|++++|+++.+++ +.++++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 333445555555432 2356788899999999988885 37888999999999999988875 888999999999999
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 212 (608)
.++.++ .+..+++|++|++++|.+..+. .+..+++|+.|++++|+++.+ ..+..+ ++|+.|++++|.++++
T Consensus 101 ~l~~~~--~l~~l~~L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l--~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 101 KVKDLS--SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI--TVLSRL--TKLDTLSLEDNQISDI 171 (291)
T ss_dssp CCCCGG--GGTTCTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGGGC--TTCSEEECCSSCCCCC
T ss_pred cCCCCh--hhccCCCCCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcc--hhhccC--CCCCEEEccCCccccc
Confidence 988864 4888899999999999988863 478889999999999999887 346677 5699999999999888
Q ss_pred cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCCh
Q psy3330 213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT 263 (608)
Q Consensus 213 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 263 (608)
.+ +.. +++|+.|++++|.++.+. .+..+++|+.|++++|+++..+.
T Consensus 172 ~~--l~~-l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 172 VP--LAG-LTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GG--GTT-CTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred hh--hcC-CCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 66 665 899999999999998873 48889999999999999988764
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=5.4e-19 Score=192.03 Aligned_cols=191 Identities=26% Similarity=0.327 Sum_probs=112.1
Q ss_pred ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132 (608)
Q Consensus 53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 132 (608)
+..+.+..+.+..+.. +..+++|+.|++++|.+..++ .|..+++|+.|+|++|.++.+++ +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 4444455555544332 345666667777777766664 36666777777777777766654 666677777777777
Q ss_pred cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212 (608)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 212 (608)
.++.++ .+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.+..+ ..+..+ ++|+.|+|++|.++++
T Consensus 98 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l--~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 98 KIKDLS--SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI--TVLSRL--TKLDTLSLEDNQISDI 168 (605)
T ss_dssp CCCCCT--TSTTCTTCCEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCC--GGGGSC--TTCSEEECCSSCCCCC
T ss_pred CCCCCh--hhccCCCCCEEEecCCCCCCCc---cccCCCccCEEECCCCccCCc--hhhccc--CCCCEEECcCCcCCCc
Confidence 666653 4666666777777777666542 366666666666666666655 234444 3355555555555554
Q ss_pred cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC
Q psy3330 213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP 262 (608)
Q Consensus 213 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 262 (608)
.+ +.. +++|+.|+|++|.++.+ ..+..+++|+.|+|++|++...|
T Consensus 169 ~~--l~~-l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP--LAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG--GTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred hh--hcc-CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 44 333 55555555555555554 23455555555555555555444
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=8e-19 Score=190.71 Aligned_cols=200 Identities=27% Similarity=0.310 Sum_probs=169.2
Q ss_pred CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 152 (608)
+..+..+.+..+.+..+.+ +..+++|+.|++++|.+..++ .|..+++|+.|+|++|.++++++ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3345556677777776643 567899999999999999886 48899999999999999999866 88999999999
Q ss_pred ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232 (608)
Q Consensus 153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 232 (608)
|++|.+..++ .+..+++|+.|+|++|++..++. +..+ ++|+.|+|++|.++++ ..+.. +++|+.|+|++|
T Consensus 94 Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~~--l~~l--~~L~~L~Ls~N~l~~l--~~l~~-l~~L~~L~Ls~N 163 (605)
T 1m9s_A 94 LDENKIKDLS---SLKDLKKLKSLSLEHNGISDING--LVHL--PQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDN 163 (605)
T ss_dssp CCSSCCCCCT---TSTTCTTCCEEECTTSCCCCCGG--GGGC--TTCSEEECCSSCCCCC--GGGGS-CTTCSEEECCSS
T ss_pred CcCCCCCCCh---hhccCCCCCEEEecCCCCCCCcc--ccCC--CccCEEECCCCccCCc--hhhcc-cCCCCEEECcCC
Confidence 9999998863 58899999999999999998753 6677 5699999999999987 45665 899999999999
Q ss_pred CCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC
Q psy3330 233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS 292 (608)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~ 292 (608)
.++++.+ +..+++|+.|+|++|++++++ .+..+++|+.|+|++|++...+...+..
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccccccc
Confidence 9998866 889999999999999999985 5899999999999999988766443333
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.76 E-value=5.4e-18 Score=153.67 Aligned_cols=118 Identities=22% Similarity=0.404 Sum_probs=108.1
Q ss_pred cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421 (608)
Q Consensus 342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~ 421 (608)
+.+++++|+++.++.... ++|+.|+++. +.++.+.+..|.++++|++|+|++|+ +..+|..+|.++++|+.|+|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~---~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP---TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC---CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 789999999999886543 7788999998 89999999999999999999999997 899999999999999999999
Q ss_pred CCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHhh
Q psy3330 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQLQ 464 (608)
Q Consensus 422 ~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~~ 464 (608)
+|+|+.+++..+ .+++|+.|+|++|||.|+|+ +.|+..|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~ 131 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQH 131 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhC
Confidence 999999998755 79999999999999999995 99999999843
No 124
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.76 E-value=5.5e-17 Score=168.27 Aligned_cols=322 Identities=18% Similarity=0.286 Sum_probs=227.6
Q ss_pred Cccccc-ccccCC-CccEEEeeCCCCcccCcccccccccccEEEccCCC---CCCCChhhhcCCCcCcEeeccCCcCCcc
Q psy3330 63 ISNVHY-TLSFYI-ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE---ISALSKDTFKGLKELKTLDLSYNKISVI 137 (608)
Q Consensus 63 i~~l~~-~~~~~~-~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 137 (608)
++.|.. +|.++. .|+.+.+.. .++.|...+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 445554 677774 599999975 5899999999999999999998764 77888899999999999988764 7788
Q ss_pred ChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCc
Q psy3330 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217 (608)
Q Consensus 138 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 217 (608)
...+|.++.+|+.+.+..+ +..+. ...|..+.+|+.+.+..+ +..+...+|.. ..|+.+.+..+ ++.+....|
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~-~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~-~~~i~~~af 201 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVA-DGMFSYCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAK-VTRIGTNAF 201 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTT-CCEECTTTT
T ss_pred hhhhhhhhcccccccccce-eeeec-ccceecccccccccccce-eeEeccccccc---cceeEEEECCc-ccccccchh
Confidence 8889999999999999754 55555 678999999999998764 67777777765 45888888754 445556677
Q ss_pred cccCCCccEEEccCCCCCccCccccc-------------CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCc
Q psy3330 218 PFTLTNLHTLALSSNIISFINESSFV-------------TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284 (608)
Q Consensus 218 ~~~l~~L~~L~L~~n~l~~~~~~~~~-------------~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 284 (608)
.. +..++......+....+....+. ....+..+.+. +.++.+...+|.++..|+.+.+.++ +..
T Consensus 202 ~~-c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~ 278 (394)
T 4gt6_A 202 SE-CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVS 278 (394)
T ss_dssp TT-CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCE
T ss_pred hh-ccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccc-cce
Confidence 76 77788777666554433222111 12233333332 2344455566777777777777543 445
Q ss_pred cChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccc
Q psy3330 285 IDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364 (608)
Q Consensus 285 ~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~ 364 (608)
+...+|.++.+|+.+.+ .+.++.++..+|.++.+
T Consensus 279 I~~~aF~~c~~L~~i~l----------------------------------------------~~~i~~I~~~aF~~c~~ 312 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEF----------------------------------------------SSRITELPESVFAGCIS 312 (394)
T ss_dssp ECTTTTTTCTTCCEEEC----------------------------------------------CTTCCEECTTTTTTCTT
T ss_pred ecCcccccccccccccC----------------------------------------------CCcccccCceeecCCCC
Confidence 66677777777766555 14456677788888888
Q ss_pred ccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEcc
Q psy3330 365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLS 444 (608)
Q Consensus 365 L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~ 444 (608)
|+.+.+. +.++.|+..+|.+|.+|+.+.+..+ +..|+..+|.++++|+.+++.++.... ..++....|+.+.+.
T Consensus 313 L~~i~lp--~~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 313 LKSIDIP--EGITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVA 386 (394)
T ss_dssp CCEEECC--TTCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC------
T ss_pred cCEEEeC--CcccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeC
Confidence 8888886 4688888899999999999999755 888999899999999999998875442 234456778877776
Q ss_pred CCcc
Q psy3330 445 DNPL 448 (608)
Q Consensus 445 ~N~~ 448 (608)
.|..
T Consensus 387 ~~~~ 390 (394)
T 4gt6_A 387 PGSI 390 (394)
T ss_dssp ----
T ss_pred CCCE
Confidence 6543
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.75 E-value=1.9e-17 Score=171.72 Aligned_cols=318 Identities=16% Similarity=0.261 Sum_probs=246.2
Q ss_pred CCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCch
Q psy3330 85 KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDS 164 (608)
Q Consensus 85 ~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (608)
.++.|...+|.++.+|+.+.|.. .++.|...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +..+. .
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~-~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG-V 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC-T
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec-c
Confidence 57889999999999999999974 589999999999999999999865 88888999999999999888754 55665 6
Q ss_pred hhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccC
Q psy3330 165 EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244 (608)
Q Consensus 165 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 244 (608)
.+|.++..++.... .....+...+|..+ .+|+.+.+.++ +..+....|.+ +.+|+.+.+..+ ++.+...+|.+
T Consensus 134 ~aF~~~~~~~~~~~--~~~~~i~~~aF~~c--~~L~~i~l~~~-~~~I~~~~F~~-c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 134 EAFKGCDFKEITIP--EGVTVIGDEAFATC--ESLEYVSLPDS-METLHNGLFSG-CGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp TTTTTCCCSEEECC--TTCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTT-CTTCCBCCCCTT-CCEECTTTTTT
T ss_pred eeeecccccccccC--ccccccchhhhccc--CCCcEEecCCc-cceeccccccC-CCCceEEEcCCC-ceEeCchhhcc
Confidence 77888765544433 33455667788888 66999999765 56677888887 999999999876 77788889999
Q ss_pred CCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhc
Q psy3330 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS 324 (608)
Q Consensus 245 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~ 324 (608)
+..|+.+.+..+. ..+.. .+....+|+.+.+.. .++.+...+|..+..|+.+.+... ...+....
T Consensus 207 ~~~L~~i~~~~~~-~~i~~-~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~---------- 271 (394)
T 4fs7_A 207 CILLENMEFPNSL-YYLGD-FALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGGSL---------- 271 (394)
T ss_dssp CTTCCBCCCCTTC-CEECT-TTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECSCT----------
T ss_pred ccccceeecCCCc-eEeeh-hhcccCCCceEEECC-CceecccccccccccceeEEcCCC--cceeeccc----------
Confidence 9999999887653 33332 344557899999864 567888889999999999888421 11110000
Q ss_pred cccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccccc
Q psy3330 325 LSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQL 404 (608)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~l 404 (608)
| .....++.+....+ .++...|..+.+|+.+.+. +.++.|+..+|.++.+|+.++|.++ ++.|
T Consensus 272 ------F----~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I 334 (394)
T 4fs7_A 272 ------F----YNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLL--DSVKFIGEEAFESCTSLVSIDLPYL--VEEI 334 (394)
T ss_dssp ------T----TTCTTCCEEEECSS---EECTTTTTTCTTCCEEEEC--TTCCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred ------c----ccccccceeccCce---eeccccccccccccccccc--cccceechhhhcCCCCCCEEEeCCc--ccEE
Confidence 0 00112234444433 2566788899999988886 5688999999999999999999765 8999
Q ss_pred CcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCC
Q psy3330 405 PSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDN 446 (608)
Q Consensus 405 p~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N 446 (608)
+..+|.++.+|+.+++..| ++.|+...| .+.+|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 9999999999999999877 999998888 5899999998654
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=6.3e-19 Score=172.00 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=93.5
Q ss_pred cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330 52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131 (608)
Q Consensus 52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 131 (608)
+++.++++.+.++.++ .+..+++|++|++++|+++.++ .+..+++|++|++++|+++.+++ +.++++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 4555566666666655 4556666666666666666655 45566666666666666666654 66666666666666
Q ss_pred CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET 211 (608)
Q Consensus 132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 211 (608)
|+++.+++. .. ++|++|++++|.+++++ .+..+++|+.|++++|++++++ .+..+ ++|+.|++++|.+++
T Consensus 95 N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~--~l~~l--~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 95 NRLKNLNGI--PS-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV--MLGFL--SKLEVLDLHGNEITN 164 (263)
T ss_dssp SCCSCCTTC--CC-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG--GGGGC--TTCCEEECTTSCCCB
T ss_pred CccCCcCcc--cc-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh--HHccC--CCCCEEECCCCcCcc
Confidence 666655432 22 56666666666666542 2555666666666666655553 23334 335555555555544
Q ss_pred ccCCCccccCCCccEEEccCCCCCc
Q psy3330 212 VLDNSFPFTLTNLHTLALSSNIISF 236 (608)
Q Consensus 212 ~~~~~~~~~l~~L~~L~L~~n~l~~ 236 (608)
. ..+.. +++|+.|++++|.+..
T Consensus 165 ~--~~l~~-l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTR-LKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTT-CCCCCEEEEEEEEEEC
T ss_pred h--HHhcc-CCCCCEEeCCCCcccC
Confidence 4 23333 4444444444444433
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.7e-17 Score=150.26 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=69.8
Q ss_pred hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHH
Q psy3330 383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWIL 460 (608)
Q Consensus 383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~ 460 (608)
.|.++++|++|++++|+ ++.+|...|..+++|+.|+|++|+++.+|...+ .+++|++|++++|+|.|+|+ +.|+..|
T Consensus 71 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 149 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149 (177)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred HccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence 34556778888888887 888888888999999999999999999998875 58999999999999999997 7899999
Q ss_pred HHh
Q psy3330 461 VQL 463 (608)
Q Consensus 461 ~~~ 463 (608)
.+.
T Consensus 150 ~~~ 152 (177)
T 2o6r_A 150 LNK 152 (177)
T ss_dssp HHH
T ss_pred Hhh
Confidence 873
No 128
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.1e-17 Score=153.93 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=96.7
Q ss_pred ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL 150 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 150 (608)
..+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++...+..|..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566666677666666655 3666666777777766655543 4666667777777777666655556666677777
Q ss_pred EEccCCCCCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEc
Q psy3330 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL 229 (608)
Q Consensus 151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 229 (608)
|++++|.++... +..+..+++|++|++++|. +..++ .+..+ ++|+.|++++|.++++. .+.. +++|+.|++
T Consensus 117 L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l--~~L~~L~l~~n~i~~~~--~l~~-l~~L~~L~l 188 (197)
T 4ezg_A 117 LDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM--PLKTL--PELKSLNIQFDGVHDYR--GIED-FPKLNQLYA 188 (197)
T ss_dssp EECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG--GGGGC--SSCCEEECTTBCCCCCT--TGGG-CSSCCEEEE
T ss_pred EEecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH--hhcCC--CCCCEEECCCCCCcChH--Hhcc-CCCCCEEEe
Confidence 777777666644 5566666777777777776 65554 34555 44777777777766653 4444 677777777
Q ss_pred cCCCCCc
Q psy3330 230 SSNIISF 236 (608)
Q Consensus 230 ~~n~l~~ 236 (608)
++|++.+
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 7776643
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.4e-18 Score=165.95 Aligned_cols=171 Identities=25% Similarity=0.313 Sum_probs=99.6
Q ss_pred CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 152 (608)
+.++..++++++.+++++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++++++ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555556666665554 3555666666666666666554 35555666666666666555543 55555555555
Q ss_pred ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232 (608)
Q Consensus 153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 232 (608)
+++|+++.++ + +.. ++|+ .|++++|.++++. .+.. +++|+.|++++|
T Consensus 92 L~~N~l~~l~-~--~~~-~~L~--------------------------~L~L~~N~l~~~~--~l~~-l~~L~~L~Ls~N 138 (263)
T 1xeu_A 92 VNRNRLKNLN-G--IPS-ACLS--------------------------RLFLDNNELRDTD--SLIH-LKNLEILSIRNN 138 (263)
T ss_dssp CCSSCCSCCT-T--CCC-SSCC--------------------------EEECCSSCCSBSG--GGTT-CTTCCEEECTTS
T ss_pred CCCCccCCcC-c--ccc-Cccc--------------------------EEEccCCccCCCh--hhcC-cccccEEECCCC
Confidence 5555555543 1 111 4444 4555555444432 2333 666666666666
Q ss_pred CCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC
Q psy3330 233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID 286 (608)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 286 (608)
+++++. .+..+++|+.|++++|+++++ ..+..+++|+.|++++|+++..+
T Consensus 139 ~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 139 KLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 666652 466677777777777777766 35667777777777777776654
No 130
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=8.8e-18 Score=156.44 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=75.9
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
+++++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++...+..|.++++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 34555555555555554 4555555555555555444432 34455555555555555554333345555555555555
Q ss_pred CCcCCccChhhhCCCCCCcEEEccCCC-CCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330 131 YNKISVINKTAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI 209 (608)
Q Consensus 131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l 209 (608)
+|+++...+..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.++ .+..+ ++|+.|++++|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~--~l~~l--~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--GIEDF--PKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT--TGGGC--SSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH--HhccC--CCCCEEEeeCccc
Confidence 555555444555555555555555554 44432 3455555555555555555544 23344 3355555555554
Q ss_pred c
Q psy3330 210 E 210 (608)
Q Consensus 210 ~ 210 (608)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.71 E-value=5.3e-17 Score=147.61 Aligned_cols=117 Identities=24% Similarity=0.456 Sum_probs=86.6
Q ss_pred cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccc
Q psy3330 19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQ 97 (608)
Q Consensus 19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l 97 (608)
+.+||..|.|.. ..++|++..++++|..+++++++|+|++|.++.++ ..|.++++|++|+|++|+|+.+++..|.++
T Consensus 3 ~~~CP~~C~C~~--~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 3 SAGCPSQCSCDQ--TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp CCSSCTTSEECS--SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCCEECC--cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 568999999954 58999999999999888888888888888777764 356677777777777777777766666666
Q ss_pred ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCcc
Q psy3330 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137 (608)
Q Consensus 98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 137 (608)
++|++|+|++|+|+.+++..|.++++|++|+|++|.+...
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7777777777777666665666666666666666665543
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.71 E-value=9.5e-17 Score=145.91 Aligned_cols=118 Identities=19% Similarity=0.373 Sum_probs=107.5
Q ss_pred cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421 (608)
Q Consensus 342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~ 421 (608)
+.+++++|+++.++.... ++|+.|+++. +.++.+.+..|.++++|++|+|++|+ ++.+|...|.++++|+.|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 689999999999887543 7889999998 88999999999999999999999997 999999989999999999999
Q ss_pred CCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHhh
Q psy3330 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQLQ 464 (608)
Q Consensus 422 ~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~~ 464 (608)
+|+|+.+|+..+ .+++|+.|+|++|+|.|+|. +.|+..|+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~ 134 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH 134 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence 999999998855 69999999999999999996 89999998753
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=4.3e-17 Score=147.61 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=120.0
Q ss_pred cccCccCccccEEEeccCCCc--ccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCC
Q psy3330 44 VVPIQLNPEVQTIILRENRIS--NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGL 121 (608)
Q Consensus 44 ~ip~~~~~~l~~L~L~~n~i~--~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l 121 (608)
.++...++++++|++++|.++ .+|..+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++...+..+..+
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 345556788999999999998 7888888899999999999999888 578889999999999999988666677778
Q ss_pred CcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCch---hhhcCCCCccEEEccCCCCCCCCcc
Q psy3330 122 KELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDS---EIFSSLKSLRILKLDNNQILDVPNN 189 (608)
Q Consensus 122 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~ 189 (608)
++|++|++++|.++.++. ..+..+++|++|++++|.++..+ + ..+..+++|++|++++|.+.+++..
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999999988754 67888899999999999988875 4 4788889999999988888777653
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=5.4e-17 Score=147.03 Aligned_cols=114 Identities=26% Similarity=0.492 Sum_probs=83.2
Q ss_pred CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNK 99 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~ 99 (608)
+||..|.|.. ..++|++..++++|..+++++++|+|++|.|+.++ ..|.++++|++|+|++|+|+.+++..|.++++
T Consensus 2 ~CP~~C~C~~--~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 2 ACPSQCSCSG--TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp CCC-CCEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCcCCcCC--CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 6999999964 57999999999999888888888887777777764 35666777777777777777776666666667
Q ss_pred ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCc
Q psy3330 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136 (608)
Q Consensus 100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 136 (608)
|++|+|++|+|+.++++.|.++++|++|+|++|.+..
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7777777777666666666666666666666666553
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.70 E-value=7.9e-16 Score=159.50 Aligned_cols=302 Identities=19% Similarity=0.304 Sum_probs=234.3
Q ss_pred CCcccCcccccccc-cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc---CCccChhhhCCCCCCcEEEccCCCCCc
Q psy3330 85 KINVLGSHNFEYQN-KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK---ISVINKTAFRDTLHLELLILSFNNITY 160 (608)
Q Consensus 85 ~l~~i~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (608)
.++.|...+|.++. .|+.+.+.. .++.|...+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ +..
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 46788999999885 699999975 5899999999999999999998764 88888899999999999888754 666
Q ss_pred cCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcc
Q psy3330 161 FEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240 (608)
Q Consensus 161 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 240 (608)
+. ..+|..+.+|+.+.+.. .+..+...+|... ..|+.+.+..+ ++.+...+|.. ..|+.+.+..+ +..+...
T Consensus 128 I~-~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c--~~L~~i~~~~~-~~~I~~~aF~~--~~l~~i~ip~~-~~~i~~~ 199 (394)
T 4gt6_A 128 ID-SEAFHHCEELDTVTIPE-GVTSVADGMFSYC--YSLHTVTLPDS-VTAIEERAFTG--TALTQIHIPAK-VTRIGTN 199 (394)
T ss_dssp EC-TTTTTTCTTCCEEECCT-TCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTT--CCCSEEEECTT-CCEECTT
T ss_pred eh-hhhhhhhcccccccccc-eeeeecccceecc--cccccccccce-eeEeccccccc--cceeEEEECCc-ccccccc
Confidence 66 77899999999999964 4667777778777 55888888754 66677777763 67888888754 4456667
Q ss_pred cccCCCccCEEeccCCcCCCCChhhhh-------------CCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330 241 SFVTLRTLHSLDLSNNNLSAIPTKQLS-------------KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307 (608)
Q Consensus 241 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~-------------~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l 307 (608)
+|.++.+++......+....+....+. ....+..+.+. +.++.+...+|.++.+|+.+.+.
T Consensus 200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp----- 273 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMP----- 273 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECC-----
T ss_pred hhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecc-----
Confidence 788888888887766655443321111 12234444443 34556666777777777766662
Q ss_pred CCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC
Q psy3330 308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN 387 (608)
Q Consensus 308 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l 387 (608)
+.+..+...+|.++.+|+.+.+. +.++.|+..+|.++
T Consensus 274 -----------------------------------------~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c 310 (394)
T 4gt6_A 274 -----------------------------------------DSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGC 310 (394)
T ss_dssp -----------------------------------------TTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTC
T ss_pred -----------------------------------------cccceecCcccccccccccccCC--CcccccCceeecCC
Confidence 23345667788899999988886 67889999999999
Q ss_pred cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCcc
Q psy3330 388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448 (608)
Q Consensus 388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~ 448 (608)
.+|+.+.|.++ ++.|+..+|.++.+|+.+.|..+ ++.|+...| .+.+|+.+++.+|..
T Consensus 311 ~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 311 ISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 99999999875 89999999999999999999654 899998887 689999999998864
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.5e-19 Score=195.27 Aligned_cols=204 Identities=24% Similarity=0.264 Sum_probs=127.9
Q ss_pred ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCC-------------CCCCChhhhcCCCcCcEee-ccCCcCCc
Q psy3330 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-------------ISALSKDTFKGLKELKTLD-LSYNKISV 136 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~n~l~~ 136 (608)
..+++|+.|+|++|+++.+|. .++++++|+.|++++|. +.+..+..++++++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 567788888888888887765 67788888888886653 4455556677777777777 56554432
Q ss_pred cChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCC
Q psy3330 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216 (608)
Q Consensus 137 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 216 (608)
+ +.+.+++|.+..++ + ..|+.|++++|+++++|. +..+ ++|+.|++++|.++.+ |..
T Consensus 425 L-----------~~l~l~~n~i~~l~-~------~~L~~L~Ls~n~l~~lp~--~~~l--~~L~~L~Ls~N~l~~l-p~~ 481 (567)
T 1dce_A 425 L-----------RSKFLLENSVLKME-Y------ADVRVLHLAHKDLTVLCH--LEQL--LLVTHLDLSHNRLRAL-PPA 481 (567)
T ss_dssp H-----------HHHHHHHHHHHHHH-H------TTCSEEECTTSCCSSCCC--GGGG--TTCCEEECCSSCCCCC-CGG
T ss_pred h-----------hhhhhhcccccccC-c------cCceEEEecCCCCCCCcC--cccc--ccCcEeecCccccccc-chh
Confidence 2 22233333333322 1 135555555555555543 4444 3366666666666543 234
Q ss_pred ccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCCCCCccChh---hhCC
Q psy3330 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSV---AFKS 292 (608)
Q Consensus 217 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~f~~ 292 (608)
+.. +++|+.|++++|.++++ | .+.++++|+.|+|++|++++++ |..+..+++|+.|+|++|+++++++. .+..
T Consensus 482 ~~~-l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 482 LAA-LRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558 (567)
T ss_dssp GGG-CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred hhc-CCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence 554 67777777777777765 3 5677777777777777777774 56677777777777777777776553 2344
Q ss_pred CCCCceeec
Q psy3330 293 LFSLKLVKI 301 (608)
Q Consensus 293 l~~L~~L~l 301 (608)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 667776653
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.7e-19 Score=193.23 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=126.6
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCC-------------CcccCcccccccccccEEE-ccCCCCCCCChh
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNK-------------INVLGSHNFEYQNKLLNLN-ISYNEISALSKD 116 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~-------------l~~i~~~~f~~l~~L~~L~-Ls~n~i~~~~~~ 116 (608)
++++.|+|++|.++.+|..++++++|+.|++++|. +....+..++.+++|+.|+ ++.|.+
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------ 422 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------ 422 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------
Confidence 45666777777777777777777777777765543 3344445566666666666 444422
Q ss_pred hhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCC
Q psy3330 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH 196 (608)
Q Consensus 117 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 196 (608)
.+|+.+.+++|.++.+++. .|+.|++++|.+++++ . |+.+++|+.|++++|.++.+|. .+..+
T Consensus 423 -----~~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~lp--~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l-- 485 (567)
T 1dce_A 423 -----DDLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVLC--H-LEQLLLVTHLDLSHNRLRALPP-ALAAL-- 485 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSCC--C-GGGGTTCCEEECCSSCCCCCCG-GGGGC--
T ss_pred -----chhhhhhhhcccccccCcc------CceEEEecCCCCCCCc--C-ccccccCcEeecCcccccccch-hhhcC--
Confidence 2455555666666555331 3667777777777653 3 6667777777777777776654 45556
Q ss_pred CCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccC-cccccCCCccCEEeccCCcCCCCChh---hhhCCCCC
Q psy3330 197 QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN-ESSFVTLRTLHSLDLSNNNLSAIPTK---QLSKLSAL 272 (608)
Q Consensus 197 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~l~~L 272 (608)
++|+.|++++|.+++++ .+.. +++|+.|++++|.++++. |..+.++++|+.|+|++|.++++|+. .+..+++|
T Consensus 486 ~~L~~L~Ls~N~l~~lp--~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 486 RCLEVLQASDNALENVD--GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp TTCCEEECCSSCCCCCG--GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCEEECCCCCCCCCc--ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 44777777777777653 4554 677777777777777665 66677777777777777777666542 23446677
Q ss_pred CEEec
Q psy3330 273 VNLDL 277 (608)
Q Consensus 273 ~~L~L 277 (608)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 76653
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.65 E-value=5.8e-16 Score=157.74 Aligned_cols=119 Identities=22% Similarity=0.291 Sum_probs=109.7
Q ss_pred cEEecCCC-CCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEc
Q psy3330 342 DRLDLSGN-NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420 (608)
Q Consensus 342 ~~L~ls~n-~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L 420 (608)
..++++++ +++++|. +..+++|+.|+++..|.++.+.+..|.++++|+.|+|++|+ +..+++.+|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence 45788998 9999887 99999999999986689999999999999999999999997 88898888999999999999
Q ss_pred CCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHh
Q psy3330 421 KGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQL 463 (608)
Q Consensus 421 ~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~ 463 (608)
++|+|+.+|+..+....|+.|+|++|+|.|||++.||..|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~ 130 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHT
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHh
Confidence 9999999999988655599999999999999999999999874
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=8e-17 Score=179.40 Aligned_cols=219 Identities=18% Similarity=0.159 Sum_probs=107.0
Q ss_pred ccccEEEeccCCCcccccccccCCCccEE-----EeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSL-----DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELK 125 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L-----~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 125 (608)
+.++.|+|.+|.+..++..+.....|+.+ +++.|.+. +++..|..++.|+.|+|++|.+..++...+ ++++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCC
Confidence 45788888888888766544333333322 23333333 456678888889999999998888876544 788899
Q ss_pred EeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEcc
Q psy3330 126 TLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLN 205 (608)
Q Consensus 126 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~ 205 (608)
+|+|++|.|+.+ |..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. |..+ ++|+.|+|+
T Consensus 251 ~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l--~~L~~L~L~ 324 (727)
T 4b8c_D 251 RLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFFDNMVTTLPWE-FGNL--CNLQFLGVE 324 (727)
T ss_dssp CCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC--CSSGGGGTTCSEEECCSSCCCCCCSS-TTSC--TTCCCEECT
T ss_pred EEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc--ChhhcCCCCCCEEECCCCCCCccChh-hhcC--CCccEEeCC
Confidence 999999988866 46678888899999999988866 56688888899999998888888765 7777 558888888
Q ss_pred CCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC--------cCCCCChhhhhCCCCCCEEec
Q psy3330 206 ENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN--------NLSAIPTKQLSKLSALVNLDL 277 (608)
Q Consensus 206 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~l~~~~~~~l~~L~~L~L 277 (608)
+|.+++..+..+.........+++++|.+++..|. .|+.|+++.| .+....+..+..+..+....+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 398 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL 398 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------------------------------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence 88888776666543111122356777777665443 4455566655 233333333444444555555
Q ss_pred cCCCCC
Q psy3330 278 SGNNFS 283 (608)
Q Consensus 278 s~N~l~ 283 (608)
++|-+.
T Consensus 399 s~Nil~ 404 (727)
T 4b8c_D 399 SYNTLC 404 (727)
T ss_dssp ---CCC
T ss_pred eccccc
Confidence 555543
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6e-16 Score=136.97 Aligned_cols=128 Identities=23% Similarity=0.217 Sum_probs=102.3
Q ss_pred cCccccEEEeccCCCc--ccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcE
Q psy3330 49 LNPEVQTIILRENRIS--NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126 (608)
Q Consensus 49 ~~~~l~~L~L~~n~i~--~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 126 (608)
.++++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..|..+++|++|++++|.++...+..+.++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4577888888888888 6777778888888888888888877 56788888888888888888866667777888888
Q ss_pred eeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCch---hhhcCCCCccEEEcc
Q psy3330 127 LDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDS---EIFSSLKSLRILKLD 179 (608)
Q Consensus 127 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~ 179 (608)
|++++|.+++++ +..+..+++|++|++++|.+++.+ + ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCC
Confidence 888888888764 367788888888888888887775 3 467788888888765
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.7e-15 Score=136.94 Aligned_cols=138 Identities=22% Similarity=0.149 Sum_probs=111.5
Q ss_pred ccCCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCC
Q psy3330 71 SFYIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL 148 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 148 (608)
...++|+.|++++|.++ .++. .+..+++|++|++++|.++.+ ..|..+++|++|++++|+++...+..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34578999999999998 6654 578899999999999999888 568889999999999999988667777778999
Q ss_pred cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc---ccccCCCCCCceEEEccCCCCcccc
Q psy3330 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NVLSNLPHQSLHYLYLNENLIETVL 213 (608)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~~~L~~L~L~~n~l~~~~ 213 (608)
++|++++|.++.++....+..+++|++|++++|.++.+++ ..+..+ ++|+.|++++|.+..++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL--PQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC--SSCCEETTEETTSCBCC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC--ccCcEecCCCCChhhcc
Confidence 9999999999887534678888889999998888888776 456666 44777777777666554
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.60 E-value=8e-14 Score=143.68 Aligned_cols=297 Identities=14% Similarity=0.262 Sum_probs=149.2
Q ss_pred cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 151 (608)
...+|+.+.+. ..++.|+..+|.++.+|+.++|.. .++.|...+|.++ +|+.+.+.. +++.+...+|.+. +|+.+
T Consensus 44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEE
T ss_pred cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Ccccc
Confidence 34455555553 245555555555555566555543 3555555555554 455555443 2445555555443 45555
Q ss_pred EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc------------CCCccc
Q psy3330 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL------------DNSFPF 219 (608)
Q Consensus 152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~------------~~~~~~ 219 (608)
.+..+ +..+. ...|.+. +|+.+.+.. .++.+...++... ..++.+.+..+...... ...+..
T Consensus 119 ~lp~~-~~~i~-~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 119 EFPGA-TTEIG-NYIFYNS-SVKRIVIPK-SVTTIKDGIGYKA--ENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp ECCTT-CCEEC-TTTTTTC-CCCEEEECT-TCCEECSCTTTTC--TTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred cCCCc-ccccc-ccccccc-eeeeeeccc-eeeccccchhccc--ccccccccccccceeecccceecccccceeccccc
Confidence 55443 22332 3334433 333333322 2333334444333 22444443332211111 011222
Q ss_pred cCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCcee
Q psy3330 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299 (608)
Q Consensus 220 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L 299 (608)
...+..+.+... ...+....+....+|+.+.+..+ ++.+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 193 -~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 -AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp -TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred -cccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 334444444332 22334455566666666666543 55566666667777777777654 666666667666666665
Q ss_pred eccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcC
Q psy3330 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 379 (608)
Q Consensus 300 ~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~ 379 (608)
.+. +.+..++..+|.++++|+.+.+.. +.++.|
T Consensus 269 ~l~----------------------------------------------~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I 301 (379)
T 4h09_A 269 NFY----------------------------------------------AKVKTVPYLLCSGCSNLTKVVMDN-SAIETL 301 (379)
T ss_dssp EEC----------------------------------------------CCCSEECTTTTTTCTTCCEEEECC-TTCCEE
T ss_pred ccc----------------------------------------------ccceeccccccccccccccccccc-ccccee
Confidence 551 123334444555555555555543 345555
Q ss_pred ChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC
Q psy3330 380 DQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF 433 (608)
Q Consensus 380 ~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~ 433 (608)
+..+|.++.+|+.+.|..+ ++.|+..+|.++.+|+.+.+..+ ++.|....|
T Consensus 302 ~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred hhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 6666666666666666543 56666666666666666666443 555555554
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.59 E-value=1.2e-13 Score=142.30 Aligned_cols=300 Identities=15% Similarity=0.270 Sum_probs=225.5
Q ss_pred ccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330 51 PEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 129 (608)
.+++.+.+.. .++.|+. +|.++.+|+.++|.. .++.|+..+|.++ +|+.+.+.. .++.+...+|.+. +|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-CcccccC
Confidence 4688888763 4777765 899999999999974 5999999999998 688888864 5888888899875 8999999
Q ss_pred cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcc------------cccCCCCC
Q psy3330 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNN------------VLSNLPHQ 197 (608)
Q Consensus 130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~~ 197 (608)
..+ +..+...+|.+. +|+.+.+..+ ++.+. ...|..+.+++.+.+..+........ .+... .
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 194 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA--K 194 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT--C
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccc-cchhcccccccccccccccceeecccceecccccceecccccc--c
Confidence 875 666777788775 6777777654 55555 67788899999888776543221111 11111 2
Q ss_pred CceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEec
Q psy3330 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277 (608)
Q Consensus 198 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~L 277 (608)
.+..+.+.. ....+....+.. ..+++.+.+..+ +..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+
T Consensus 195 ~~~~~~~~~-~~~~i~~~~f~~-~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 195 TGTEFTIPS-TVKTVTAYGFSY-GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCSEEECCT-TCCEECTTTTTT-CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccc-ceeEEeeccccc-ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 344444433 233344455655 778888888654 56677788889999999998765 88888888999999999998
Q ss_pred cCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChh
Q psy3330 278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357 (608)
Q Consensus 278 s~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~ 357 (608)
.. .++.+...+|.++.+|+.+.+ .++.++.+...
T Consensus 271 ~~-~i~~i~~~aF~~c~~L~~i~l---------------------------------------------~~~~i~~I~~~ 304 (379)
T 4h09_A 271 YA-KVKTVPYLLCSGCSNLTKVVM---------------------------------------------DNSAIETLEPR 304 (379)
T ss_dssp CC-CCSEECTTTTTTCTTCCEEEE---------------------------------------------CCTTCCEECTT
T ss_pred cc-cceeccccccccccccccccc---------------------------------------------cccccceehhh
Confidence 65 588888888998888876655 45667778888
Q ss_pred hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCC
Q psy3330 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL 415 (608)
Q Consensus 358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L 415 (608)
+|.++.+|+.+.+. +.++.|+..+|.+|.+|+.+.+..+ +..|...+|.++..+
T Consensus 305 aF~~c~~L~~i~lp--~~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 305 VFMDCVKLSSVTLP--TALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSSCC
T ss_pred hhcCCCCCCEEEcC--ccccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCCCC
Confidence 88889999888886 4688899999999999999999765 888999999877543
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.7e-15 Score=136.80 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=72.1
Q ss_pred ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130 (608)
Q Consensus 51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 130 (608)
.++++|++++|.++.++......++|++|++++|.++++ ..|..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 456666666666665543222233666666666666655 345556666666666666666555555556666666666
Q ss_pred CCcCCccCh-hhhCCCCCCcEEEccCCCCCccCchh---hhcCCCCccEEEccCCCC
Q psy3330 131 YNKISVINK-TAFRDTLHLELLILSFNNITYFEDSE---IFSSLKSLRILKLDNNQI 183 (608)
Q Consensus 131 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l 183 (608)
+|.++.++. ..+..+++|+.|++++|.+...+ .. .+..+++|+.|+++.|..
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEECCH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCcCCH
Confidence 666655543 34555566666666666555442 11 355555555555555543
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=5.6e-16 Score=172.57 Aligned_cols=187 Identities=22% Similarity=0.221 Sum_probs=110.2
Q ss_pred CCccEEEeeCCCCcccCcccccccccccEEEccCCCCCC---------CChhhhcCCCcCcEeeccCCcCCccChhhhCC
Q psy3330 74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA---------LSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144 (608)
Q Consensus 74 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 144 (608)
++++.|+|.+|.+..++... |+.++|+.|.|.. ++++.|..++.|+.|+|++|.+..+++..+ .
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-K 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-G
T ss_pred CccceEEeeCCCCCcchhhH------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-C
Confidence 56788999999888765532 3334444443332 446778899999999999999998866555 7
Q ss_pred CCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCc
Q psy3330 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNL 224 (608)
Q Consensus 145 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 224 (608)
+++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. +..+ .+|++|+|++|.++.++. .|.. +++|
T Consensus 246 l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l--~~L~~L~L~~N~l~~lp~-~~~~-l~~L 318 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTEL--PAEIKNLSNLRVLDLSHNRLTSLPAE-LGSC--FQLKYFYFFDNMVTTLPW-EFGN-LCNL 318 (727)
T ss_dssp CCSCSCCBCTTSCCSCC--CGGGGGGTTCCEEECTTSCCSSCCSS-GGGG--TTCSEEECCSSCCCCCCS-STTS-CTTC
T ss_pred CCCCCEEEeeCCcCccc--ChhhhCCCCCCEEeCcCCcCCccChh-hcCC--CCCCEEECCCCCCCccCh-hhhc-CCCc
Confidence 89999999999999966 56789999999999999999988654 6677 569999999999987654 4776 8999
Q ss_pred cEEEccCCCCCccCcccccCCC-ccCEEeccCCcCCCCChhhhhCCCCCCEEeccCC
Q psy3330 225 HTLALSSNIISFINESSFVTLR-TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280 (608)
Q Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N 280 (608)
+.|+|++|.+++..+..+..+. .+..++|++|.+++..+ ..|+.|+++.|
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 9999999999887777665432 22347788888877554 35667777776
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=5.7e-15 Score=130.60 Aligned_cols=129 Identities=25% Similarity=0.230 Sum_probs=99.1
Q ss_pred cCCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330 72 FYIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE 149 (608)
Q Consensus 72 ~~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 149 (608)
..++|+.|++++|.++ .++. .+..+++|++|++++|.++.+ ..|..+++|++|++++|.+++..+..+.++++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3467888899988888 5554 678888888888888888887 5688888888888888888886677777788888
Q ss_pred EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc---ccccCCCCCCceEEEcc
Q psy3330 150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NVLSNLPHQSLHYLYLN 205 (608)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~~~L~~L~L~ 205 (608)
+|++++|.+++++.+..+..+++|++|++++|.++.+++ ..+..+ ++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence 888888888876434678888888888888888877766 455555 346666654
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=6.6e-15 Score=134.17 Aligned_cols=136 Identities=27% Similarity=0.313 Sum_probs=97.5
Q ss_pred ccccCCCccEEEeeCCCCcccCccccccc-ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCC
Q psy3330 69 TLSFYIELRSLDLSVNKINVLGSHNFEYQ-NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH 147 (608)
Q Consensus 69 ~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 147 (608)
.+.++.+|+.|++++|+++.++. +..+ ++|++|++++|.++.+ ..|.++++|++|++++|.++.+++..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45677888888888888887742 4444 4888888888888877 35788888888888888888887666777888
Q ss_pred CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcc---cccCCCCCCceEEEccCCCCc
Q psy3330 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNN---VLSNLPHQSLHYLYLNENLIE 210 (608)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~~~L~~L~L~~n~l~ 210 (608)
|++|++++|.+..++....+..+++|+.|++++|.+..++.. .+..+ ++|+.|++++|.+.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l--~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV--PQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC--TTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC--CccceeCCCcCCHH
Confidence 888888888887764223677778888888888877766553 34444 33555555555443
No 148
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.51 E-value=1.7e-14 Score=123.41 Aligned_cols=102 Identities=25% Similarity=0.459 Sum_probs=84.9
Q ss_pred eeecccCcccc--ccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccc
Q psy3330 392 TVIINENMNLK--QLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKST 468 (608)
Q Consensus 392 ~L~Ls~N~~l~--~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~ 468 (608)
.++.+++. ++ .+|.+ + .++|+.|+|++|+|+.||.+.+ .+++|+.|+|++|||.|||.+.||..|++....
T Consensus 12 ~v~Cs~~~-L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~-- 85 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPE-- 85 (130)
T ss_dssp EEECCSSC-CCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSC--
T ss_pred EEEeCCCC-CccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcc--
Confidence 67777876 77 89976 2 3579999999999999999987 589999999999999999999999999983210
Q ss_pred cccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccC
Q psy3330 469 METTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCE 536 (608)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~ 536 (608)
......++|++|+.++|+.+.++..+++.|.
T Consensus 86 -------------------------------------~~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~ 116 (130)
T 3rfe_A 86 -------------------------------------RAPYRDLRCVAPPALRGRLLPYLAEDELRAA 116 (130)
T ss_dssp -------------------------------------SGGGTTCBCCBSTTTTTCBGGGCCHHHHHHT
T ss_pred -------------------------------------cccccCcEeCcChHHcCCCcccCCHHHhhCc
Confidence 0113478999999999999999998888753
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=9.1e-14 Score=141.43 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCCc-eecCCceEEEecCC-CCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeC-CCCcccCcccccccc
Q psy3330 22 CPSRC-QCFDQKLEASCTDA-GLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSV-NKINVLGSHNFEYQN 98 (608)
Q Consensus 22 Cp~~C-~c~~~~~~v~C~~~-~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~ 98 (608)
||..| .|.. ..|+|++. +++.+|. ++ .+++|+.|+|++ |.|+.+++..|.+++
T Consensus 1 cp~~c~~C~~--~~v~~~~~n~l~~ip~-l~---------------------~~~~L~~L~l~~~n~l~~~~~~~~~~l~ 56 (347)
T 2ifg_A 1 CPDACCPHGS--SGLRCTRDGALDSLHH-LP---------------------GAENLTELYIENQQHLQHLELRDLRGLG 56 (347)
T ss_dssp CCSSSCCSSS--SCEECCSSCCCTTTTT-SC---------------------SCSCCSEEECCSCSSCCEECGGGSCSCC
T ss_pred CCCcCccccC--CEEEcCCCCCCCccCC-CC---------------------CCCCeeEEEccCCCCCCCcChhHhcccc
Confidence 99999 9954 46899888 7877776 44 344555556654 556666655566666
Q ss_pred cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCcc
Q psy3330 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161 (608)
Q Consensus 99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (608)
+|++|+|++|+|+++++.+|.++++|++|+|++|+|+.+++..|..+. |+.|+|.+|.+...
T Consensus 57 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 666666666666666665666666666666666666666555555544 66666666666543
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=7.8e-15 Score=136.48 Aligned_cols=130 Identities=25% Similarity=0.313 Sum_probs=91.8
Q ss_pred cccEEEeccC--CCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330 52 EVQTIILREN--RISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129 (608)
Q Consensus 52 ~l~~L~L~~n--~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 129 (608)
.++...+.+. .++.+|..+..+++|++|++++|.++.++ .+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEEC
Confidence 3444445443 45555567778888888888888887766 67778888888888888877653 5566677888888
Q ss_pred cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186 (608)
Q Consensus 130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 186 (608)
++|++++++ .+..+++|++|++++|.++.++....+..+++|++|++++|.+...
T Consensus 101 ~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 101 SYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 888887763 4667777888888888877764224577777777777777766543
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=6.8e-15 Score=136.89 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=17.3
Q ss_pred ccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCc
Q psy3330 94 FEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136 (608)
Q Consensus 94 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 136 (608)
|..+++|++|++++|.++.++ .+.++++|++|++++|.++.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc
Confidence 344444444444444444433 33344444444444444443
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=9.7e-13 Score=134.42 Aligned_cols=188 Identities=19% Similarity=0.126 Sum_probs=90.6
Q ss_pred CCCccEEEeeCCCCcccCccccccc-----ccccEEEccCCCCCCCChhhh-cCCCcCcEeeccCCcCCccChhhh----
Q psy3330 73 YIELRSLDLSVNKINVLGSHNFEYQ-----NKLLNLNISYNEISALSKDTF-KGLKELKTLDLSYNKISVINKTAF---- 142 (608)
Q Consensus 73 ~~~L~~L~Ls~n~l~~i~~~~f~~l-----~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~---- 142 (608)
.++|+.|+|++|.++......+... ++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456666666666665443333322 466666666666653322222 234456666666666654433333
Q ss_pred -CCCCCCcEEEccCCCCCccCc---hhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCcc
Q psy3330 143 -RDTLHLELLILSFNNITYFED---SEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218 (608)
Q Consensus 143 -~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 218 (608)
...++|++|+|++|.++.... ...+...++|++|+|++|.+.......+ ...+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L----------------------~~~L~ 208 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL----------------------AAQLD 208 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH----------------------HHHGG
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH----------------------HHHHh
Confidence 234556666666666544220 1223445555555555555443211100 11222
Q ss_pred ccCCCccEEEccCCCCCccCc----ccccCCCccCEEeccCCcCCCCChhhhhCCCC-----CCEEe--ccCCCCC
Q psy3330 219 FTLTNLHTLALSSNIISFINE----SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA-----LVNLD--LSGNNFS 283 (608)
Q Consensus 219 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~-----L~~L~--Ls~N~l~ 283 (608)
. .++|+.|++++|.++.... ..+...++|++|+|++|.++......+..+.. |+.+. +..+.+.
T Consensus 209 ~-~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 209 R-NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp G-CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred c-CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 2 4456666666666654221 22334567777777777776544444443321 45555 4444443
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.8e-12 Score=132.46 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=65.2
Q ss_pred CCceEEEccCCCCccccCC----CccccCCCccEEEccCCCCCccC----cccccCCCccCEEeccCCcCCCCCh----h
Q psy3330 197 QSLHYLYLNENLIETVLDN----SFPFTLTNLHTLALSSNIISFIN----ESSFVTLRTLHSLDLSNNNLSAIPT----K 264 (608)
Q Consensus 197 ~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~----~ 264 (608)
++|+.|++++|.++..... .+.. .++|++|+|++|.++... ...+...++|++|+|++|.++.... .
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3355666666655432211 2233 667888888888876532 3456677899999999999986432 3
Q ss_pred hhhCCCCCCEEeccCCCCCccChhhhCCC
Q psy3330 265 QLSKLSALVNLDLSGNNFSNIDSVAFKSL 293 (608)
Q Consensus 265 ~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l 293 (608)
.+...++|++|+|++|.++......+..+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 45667999999999999987666555443
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.72 E-value=2e-08 Score=85.46 Aligned_cols=64 Identities=23% Similarity=0.480 Sum_probs=50.9
Q ss_pred CCCCCceecCCceEEEecCCCCc--cccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCC
Q psy3330 21 ICPSRCQCFDQKLEASCTDAGLE--VVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKI 86 (608)
Q Consensus 21 ~Cp~~C~c~~~~~~v~C~~~~l~--~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l 86 (608)
+||..|.|.. ..|+|++.+++ .+|..+|+++++|+|++|+|+.++. .|..+++|+.|+|++|.+
T Consensus 1 ~CP~~C~C~~--~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 1 PCPAPCSCAG--TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCCTTCEEET--TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCCEEcC--CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5999999974 48999999999 9999999988888888888877765 455666666666666644
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.6e-08 Score=102.25 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=26.7
Q ss_pred hcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhc--CCCCccEEEcc
Q psy3330 118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS--SLKSLRILKLD 179 (608)
Q Consensus 118 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~ 179 (608)
+..+++|+.|+|++|.-..+++ +. +++|+.|++..+.+.... ...+. .+++|+.|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEe
Confidence 3445555555555542111211 22 455666666655544322 12222 45666666654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=4.6e-07 Score=91.55 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=96.9
Q ss_pred cccccCCCccEEEeeCCCCc-----cc----CcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC
Q psy3330 68 YTLSFYIELRSLDLSVNKIN-----VL----GSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138 (608)
Q Consensus 68 ~~~~~~~~L~~L~Ls~n~l~-----~i----~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 138 (608)
.+...+++|+.|.+...... .+ ....+..+|+|+.|.|++|.-..+++ +. +++|++|+|..+.+..-.
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHH
Confidence 34455666666666544221 11 11233456677777776663122322 32 667777777776665332
Q ss_pred hhhhC--CCCCCcEEEccC--CC------CCccCchhhh--cCCCCccEEEccCCCCCCCCccccc---CCCCCCceEEE
Q psy3330 139 KTAFR--DTLHLELLILSF--NN------ITYFEDSEIF--SSLKSLRILKLDNNQILDVPNNVLS---NLPHQSLHYLY 203 (608)
Q Consensus 139 ~~~~~--~l~~L~~L~L~~--n~------l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~~~L~~L~ 203 (608)
...+. .+++|+.|+|+. |. +..+. ..+ ..+++|++|++.+|.+.......+. .+ ++|+.|+
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~--~~L~~Ld 285 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL--PQLETMD 285 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG--GGCSEEE
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHH--HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC--CCCCEEE
Confidence 23332 567777777642 11 11111 112 2467788888877776531111111 23 4588888
Q ss_pred ccCCCCccccC----CCccccCCCccEEEccCCCCCccCcccccC-CCccCEEeccCCc
Q psy3330 204 LNENLIETVLD----NSFPFTLTNLHTLALSSNIISFINESSFVT-LRTLHSLDLSNNN 257 (608)
Q Consensus 204 L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 257 (608)
|+.|.++.... ..+.. +++|+.|+++.|.++......+.. + ...++++.++
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 88888776422 22233 788999999998876533333322 1 2456776665
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.2e-07 Score=84.67 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=71.4
Q ss_pred ccccCCCccEEEeeCC-CCcccC----cccccccccccEEEccCCCCCCCC----hhhhcCCCcCcEeeccCCcCCccC-
Q psy3330 69 TLSFYIELRSLDLSVN-KINVLG----SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLDLSYNKISVIN- 138 (608)
Q Consensus 69 ~~~~~~~L~~L~Ls~n-~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~- 138 (608)
.+...+.|++|+|++| .+.... ...+...++|++|+|++|.|..-. ...+...++|++|+|++|.|+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4556677777777777 665422 123445567777777777766422 223444567777777777776532
Q ss_pred ---hhhhCCCCCCcEEEc--cCCCCCccC---chhhhcCCCCccEEEccCCCCC
Q psy3330 139 ---KTAFRDTLHLELLIL--SFNNITYFE---DSEIFSSLKSLRILKLDNNQIL 184 (608)
Q Consensus 139 ---~~~~~~l~~L~~L~L--~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~ 184 (608)
...+...++|++|+| ++|.+.... ....+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 234555667888888 677776532 0234455577888888877654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2.1e-07 Score=84.74 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=56.1
Q ss_pred ccccEEEeccC-CCcc-----cccccccCCCccEEEeeCCCCcccCc----ccccccccccEEEccCCCCCCCC----hh
Q psy3330 51 PEVQTIILREN-RISN-----VHYTLSFYIELRSLDLSVNKINVLGS----HNFEYQNKLLNLNISYNEISALS----KD 116 (608)
Q Consensus 51 ~~l~~L~L~~n-~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~~----~~ 116 (608)
+.+++|+|++| .+.. +...+...++|++|+|++|.|..... ..+...+.|++|+|++|.|+... ..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45666666666 5542 22344555666666666666554221 12333455666666666655421 22
Q ss_pred hhcCCCcCcEeec--cCCcCCccCh----hhhCCCCCCcEEEccCCCCC
Q psy3330 117 TFKGLKELKTLDL--SYNKISVINK----TAFRDTLHLELLILSFNNIT 159 (608)
Q Consensus 117 ~~~~l~~L~~L~L--s~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 159 (608)
++...++|++|+| ++|.|+.... ..+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444555666666 5566554221 23334455666666666543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=2.8e-07 Score=88.37 Aligned_cols=82 Identities=28% Similarity=0.269 Sum_probs=46.9
Q ss_pred cccccccEEEccCCCCCCCCh--hhhcCCCcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCc------hh
Q psy3330 95 EYQNKLLNLNISYNEISALSK--DTFKGLKELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFED------SE 165 (608)
Q Consensus 95 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~ 165 (608)
.++++|++|+|++|+|+++.. ..+..+++|+.|+|++|+|+++.. ..+..+ +|++|+|++|.+.+... ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 345667777777777666542 344566677777777777666521 233333 66777777776654210 12
Q ss_pred hhcCCCCccEEE
Q psy3330 166 IFSSLKSLRILK 177 (608)
Q Consensus 166 ~~~~l~~L~~L~ 177 (608)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355566666654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=7e-07 Score=85.59 Aligned_cols=82 Identities=29% Similarity=0.199 Sum_probs=65.4
Q ss_pred ccCCCccEEEeeCCCCcccCc--ccccccccccEEEccCCCCCCCC-hhhhcCCCcCcEeeccCCcCCccCh-------h
Q psy3330 71 SFYIELRSLDLSVNKINVLGS--HNFEYQNKLLNLNISYNEISALS-KDTFKGLKELKTLDLSYNKISVINK-------T 140 (608)
Q Consensus 71 ~~~~~L~~L~Ls~n~l~~i~~--~~f~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-------~ 140 (608)
.++++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|+++. -+.+.++ +|++|+|++|.+.+-.+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 568999999999999998764 56778999999999999999873 1233444 99999999999975222 3
Q ss_pred hhCCCCCCcEEEc
Q psy3330 141 AFRDTLHLELLIL 153 (608)
Q Consensus 141 ~~~~l~~L~~L~L 153 (608)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4678899998874
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=3.3e-06 Score=74.97 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCccEEEeeCCCCcccCcccccccccccEEEccCCC-CCCCChhhhcCC----CcCcEeeccCCc-CCccChhhhCCCCC
Q psy3330 74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-ISALSKDTFKGL----KELKTLDLSYNK-ISVINKTAFRDTLH 147 (608)
Q Consensus 74 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 147 (608)
.+|+.||++++.|+...-..+.++++|++|+|++|. |+.-.-..+..+ ++|++|+|++|. |+...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665555555666667777776663 543332334443 356666666653 55433344555666
Q ss_pred CcEEEccCCC
Q psy3330 148 LELLILSFNN 157 (608)
Q Consensus 148 L~~L~L~~n~ 157 (608)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=4.5e-06 Score=74.10 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=52.7
Q ss_pred CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC----cccceeecccCccccccCcccCCCCC
Q psy3330 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN----IQLETVIINENMNLKQLPSKLFQGNT 413 (608)
Q Consensus 338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l----~~L~~L~Ls~N~~l~~lp~~~f~~l~ 413 (608)
...++.||++++.++...-..+.++++|+.|+++.|..++......+..+ ++|++|+|++|..+++-.-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34678999999988776655666666777777766666655555555543 35666666666544443322344455
Q ss_pred CCCEEEcCCC
Q psy3330 414 NLKSVSLKGN 423 (608)
Q Consensus 414 ~L~~L~L~~N 423 (608)
+|+.|+|+++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555555
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.0011 Score=59.85 Aligned_cols=113 Identities=8% Similarity=-0.023 Sum_probs=66.7
Q ss_pred cccCCCccEEEeeCC-CCcccC----cccccccccccEEEccCCCCCCCCh----hhhcCCCcCcEeeccCCcCCccCh-
Q psy3330 70 LSFYIELRSLDLSVN-KINVLG----SHNFEYQNKLLNLNISYNEISALSK----DTFKGLKELKTLDLSYNKISVINK- 139 (608)
Q Consensus 70 ~~~~~~L~~L~Ls~n-~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~- 139 (608)
+.+-+.|+.|+|++| +|..-. ..++..-..|+.|+|++|.|..... .++..-+.|++|+|++|.|+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345566777777764 665321 2234455677777777777764322 233445678888888887764322
Q ss_pred ---hhhCCCCCCcEEEccCCCC---CccC---chhhhcCCCCccEEEccCCC
Q psy3330 140 ---TAFRDTLHLELLILSFNNI---TYFE---DSEIFSSLKSLRILKLDNNQ 182 (608)
Q Consensus 140 ---~~~~~l~~L~~L~L~~n~l---~~~~---~~~~~~~l~~L~~L~L~~n~ 182 (608)
.++..-+.|++|+|++|.. .... ....+..-+.|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445556688888875532 2211 02344555778888887664
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.58 E-value=0.004 Score=56.22 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=17.1
Q ss_pred CCCcCcEeeccCCcCCccCh----hhhCCCCCCcEEEccCCCCC
Q psy3330 120 GLKELKTLDLSYNKISVINK----TAFRDTLHLELLILSFNNIT 159 (608)
Q Consensus 120 ~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 159 (608)
.-..|+.|+|++|.|..... .++..-+.|+.|+|++|.|.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33445555555554443211 12223344555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.17 E-value=0.13 Score=40.62 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=41.2
Q ss_pred CCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCc
Q psy3330 374 PNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424 (608)
Q Consensus 374 ~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~ 424 (608)
..++.|+..+|.+|.+|+.+.|-.+ ++.|...+|.++.+|+.+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 4567788888999999999999876 889999999999999999887754
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.16 E-value=0.62 Score=36.67 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=44.2
Q ss_pred CCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCc
Q psy3330 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399 (608)
Q Consensus 348 ~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~ 399 (608)
+..++.|...+|.++++|+.+.|- ..++.|+..+|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP--~~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQ--PNIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEEC--TTSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcC--CchheEcHHHHhccCCccEEEEcCCC
Confidence 457788999999999999999987 57899999999999999999997653
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.22 E-value=3.2 Score=26.70 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhheeeEeehhHH
Q psy3330 542 YVLSFMLLLLSSGVICILMYFIYRKR 567 (608)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (608)
++..+.++++++++++.+.|+++|++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 44444443444444444444444443
No 168
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=54.42 E-value=2.2 Score=27.55 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=5.9
Q ss_pred HHHhheeeEeehhHH
Q psy3330 553 SGVICILMYFIYRKR 567 (608)
Q Consensus 553 ~~~~~~~~~~~~~~~ 567 (608)
+++++.+.++++|++
T Consensus 24 ~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 24 LLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhh
Confidence 333334444444433
No 169
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=41.58 E-value=11 Score=22.33 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=8.3
Q ss_pred HHHhheeeEeehhHHH
Q psy3330 553 SGVICILMYFIYRKRA 568 (608)
Q Consensus 553 ~~~~~~~~~~~~~~~~ 568 (608)
+.++....|.+||.|+
T Consensus 19 if~~lg~tflywrgrr 34 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEcccc
Confidence 3333444556666655
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=37.06 E-value=6.6 Score=24.41 Aligned_cols=10 Identities=20% Similarity=0.291 Sum_probs=4.1
Q ss_pred hheeeEeehh
Q psy3330 556 ICILMYFIYR 565 (608)
Q Consensus 556 ~~~~~~~~~~ 565 (608)
++.+.|++||
T Consensus 27 i~~l~~~~~r 36 (38)
T 2k1k_A 27 LLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHee
Confidence 3334444443
No 171
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.14 E-value=19 Score=21.77 Aligned_cols=14 Identities=0% Similarity=0.233 Sum_probs=5.2
Q ss_pred HHHhheeeEeehhH
Q psy3330 553 SGVICILMYFIYRK 566 (608)
Q Consensus 553 ~~~~~~~~~~~~~~ 566 (608)
+++++.++.+++||
T Consensus 20 ~vii~l~~~~~iRR 33 (35)
T 1iij_A 20 FLILVVVVGILIKR 33 (35)
T ss_dssp HHHHTTTTTHHHHH
T ss_pred HHHHHHHhheEEee
Confidence 33333333333333
Done!