RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3330
(608 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 52.5 bits (127), Expect = 4e-09
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+L++S N ++ + FKGL LK LDLS N ++ I+ AF L L LS NN+
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.1 bits (118), Expect = 8e-08
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
NL +L LS+N ++ I + +F L L LDLS NNL++I + S L +L +LDLSGNN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 48.3 bits (116), Expect = 1e-07
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
LK+LDLS N+++VI AF+ +L++L LS NN+T E FS L SLR L L N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNNL 60
Score = 47.9 bits (115), Expect = 2e-07
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
L+SLDLS N++ V+ F+ L L++S N ++++S + F GL L++LDLS N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 40.6 bits (96), Expect = 7e-05
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
+L L L+ N + + D +F L NL L LS N ++ I+ +F L +L SLDLS NN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAF-KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 258 L 258
L
Sbjct: 60 L 60
Score = 40.2 bits (95), Expect = 1e-04
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
L SLDLSNN L+ IP L L LDLSGNN ++I AF L SL+
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR 51
Score = 38.7 bits (91), Expect = 4e-04
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE 206
+L+ L LS N +T D F L +L++L L N + + S LP SL L L+
Sbjct: 1 NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSISPEAFSGLP--SLRSLDLSG 57
Query: 207 NLI 209
N +
Sbjct: 58 NNL 60
Score = 34.8 bits (81), Expect = 0.008
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNP 447
L+++ ++ N L +P F+G NLK + L GN+L+ + F L + LDLS N
Sbjct: 1 NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 448 L 448
L
Sbjct: 60 L 60
Score = 28.3 bits (64), Expect = 1.8
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
LDLS N + I AFK L +LK++ ++ NL SI AF L ++ ++ N
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSISPEAFSGLPSLRSLDLSGNN 59
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 53.3 bits (128), Expect = 3e-07
Identities = 121/439 (27%), Positives = 177/439 (40%), Gaps = 61/439 (13%)
Query: 51 PEVQTIILRENRIS-----NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
P +QTI L N++S ++ T S LR L+LS N N GS L L++
Sbjct: 93 PYIQTINLSNNQLSGPIPDDIFTTSS---SLRYLNLSNN--NFTGSIPRGSIPNLETLDL 147
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
S N +S + LK LDL N + + + LE L L+ N + E
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207
Query: 166 IFSSLKSLRILKLD-NNQILDVPNNV--LSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
+ +KSL+ + L NN ++P + L++L H L Y L I + L N L
Sbjct: 208 L-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGN-----LK 260
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
NL L L N +S S +L+ L SLDLS+N+LS + + +L L L L NNF
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320
Query: 283 SNIDSVAFKSLFSLK----------------LVKINLIPNLDSIDQPLSLSLPPLLL--- 323
+ VA SL L+ L K N + LD L+ +P L
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380
Query: 324 ----------SLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL---FSLKLVKI 370
SL + SL +L+ R+ L N+FS F L + L +
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLR--RVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438
Query: 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
NL ++S D L+ + + N LP G+ L+++ L N S
Sbjct: 439 NLQGRINSRKW----DMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVP 492
Query: 431 SHF-PLERISFLDLSDNPL 448
L + L LS+N L
Sbjct: 493 RKLGSLSELMQLKLSENKL 511
Score = 52.9 bits (127), Expect = 4e-07
Identities = 58/187 (31%), Positives = 76/187 (40%), Gaps = 35/187 (18%)
Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL---KSLRILKLDN 180
L LDLS N ++ + +L LIL N++ + EI SL +SLR ++L +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL----EGEIPKSLGACRSLRRVRLQD 413
Query: 181 NQI----------------LDVPNNVLS--------NLPHQSLHYLYLNENLIETVLDNS 216
N LD+ NN L ++P SL L L N L +S
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP--SLQMLSLARNKFFGGLPDS 471
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
F L L LS N S +L L L LS N LS +LS LV+LD
Sbjct: 472 F--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529
Query: 277 LSGNNFS 283
LS N S
Sbjct: 530 LSHNQLS 536
Score = 50.6 bits (121), Expect = 2e-06
Identities = 108/389 (27%), Positives = 174/389 (44%), Gaps = 55/389 (14%)
Query: 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS-VINKTAFRDTLHLELLILSFN 156
++++++++S IS L ++T++LS N++S I F + L L LS N
Sbjct: 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQIL-DVPNNVLSNLPHQSLHYLYLNENLIETVLDN 215
N F S S+ +L L L NN + ++PN++ S SL L L N VL
Sbjct: 129 N---FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS---FSSLKVLDLGGN----VLVG 178
Query: 216 SFPFTLTNLHTL---ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272
P +LTNL +L L+SN + +++L + L NNLS ++ L++L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238
Query: 273 VNLDLSGNNFS--------NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS 324
+LDL NN + N+ ++ + L+ KL + P++ S+ + +SL L LS
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLS 297
Query: 325 LSIP-LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI------NLIP--- 374
IP L L L + L L NNF+ VA SL L+++++ IP
Sbjct: 298 GEIPELVIQLQNL-----EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352
Query: 375 ----NLDSID----------QRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
NL +D + L +I+ N ++P L + L+ V L
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRL 411
Query: 421 KGNSLSHLEASHF-PLERISFLDLSDNPL 448
+ NS S S F L + FLD+S+N L
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNL 440
Score = 41.4 bits (97), Expect = 0.002
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
P +Q + L N+ L +LDLS N+ + ++L+ L +S N++
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
S D K+L +LDLS+N++S +F + L L LS N ++
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 52.3 bits (125), Expect = 4e-07
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 12/241 (4%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
L + L SLDL++N++ S E N L +L++ N I+ + LK L
Sbjct: 87 ENLLNLLPLPSLDLNLNRLRSNISELLELTN-LTSLDLDNNNITDIPPLIGLLKSNLKEL 145
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP 187
DLS NKI + + R+ +L+ L LSFN+++ S+L +L L L N+I D+P
Sbjct: 146 DLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKISDLP 202
Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRT 247
L +L L L+ N I +L + L NL L LS+N + + E S L
Sbjct: 203 P--EIELL-SALEELDLSNNSIIELLSSL--SNLKNLSGLELSNNKLEDLPE-SIGNLSN 256
Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307
L +LDLSNN +S+I + L L+ L LDLSGN+ SN + L L+L+ L+
Sbjct: 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314
Query: 308 D 308
Sbjct: 315 A 315
Score = 42.3 bits (99), Expect = 5e-04
Identities = 90/363 (24%), Positives = 145/363 (39%), Gaps = 40/363 (11%)
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
SALS +T + + T + I++ + +++ + L L+ ++ T S L
Sbjct: 10 SALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRL 69
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
SL +L LD N+L+ LP SL + NL + S LTNL +L L
Sbjct: 70 LSLDLLSPSGISSLDGSENLLNLLPLPSL-----DLNLNRLRSNISELLELTNLTSLDLD 124
Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPT----------------------KQLSK 268
+N I+ I + L LDLS+N + ++P+ K LS
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184
Query: 269 LSALVNLDLSGNNFSNIDSVAFK--SLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS 326
LS L NLDLSGN S++ +L L L ++I L S+ +LS L +
Sbjct: 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS---GLELSN 241
Query: 327 IPLAFSLTPLGTLKC-DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385
L +G L + LDLS N S+I S+ + + N + N
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP------- 294
Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSD 445
L ++ L L + + N+ L + ++ N + + LE ++ L D
Sbjct: 295 LIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLD 354
Query: 446 NPL 448
N L
Sbjct: 355 NAL 357
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 45.8 bits (109), Expect = 4e-05
Identities = 54/230 (23%), Positives = 87/230 (37%), Gaps = 43/230 (18%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L+ LDLS N + G E S L + L+ L L+ N +
Sbjct: 83 LQELDLSDNALGPDGCGVLE---------------SLLRSSS------LQELKLNNNGLG 121
Query: 136 V----INKTAFRD-TLHLELLILSFNNITY---FEDSEIFSSLKSLRILKLDNNQILDVP 187
+ +D LE L+L N + ++ + + L+ L L NN I D
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181
Query: 188 NNVLSN-LPHQS-LHYLYLNENLIETVLDNSF---PFTLTNLHTLALSSN-----IISFI 237
L+ L L L LN N + ++ +L +L L L N + +
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA----LVNLDLSGNNFS 283
+ +L +L LS N+++ K L+++ A L+ LDL GN F
Sbjct: 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
Score = 36.6 bits (85), Expect = 0.027
Identities = 36/187 (19%), Positives = 58/187 (31%), Gaps = 25/187 (13%)
Query: 11 ILALTKLNKAICPSRC-----QCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN 65
L L K + +LE + +A + + N +++ + L N I +
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR--ANRDLKELNLANNGIGD 179
Query: 66 --VHYT---LSFYIELRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEI-----S 111
+ L L LDL+ N + G + L LN+ N + +
Sbjct: 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239
Query: 112 ALSKDTFKGLKELKTLDLSYNKI----SVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
AL+ L TL LS N I + + L L L N +
Sbjct: 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299
Query: 168 SSLKSLR 174
SL
Sbjct: 300 ESLLEPG 306
Score = 31.9 bits (73), Expect = 0.85
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 37/213 (17%)
Query: 122 KELKTLDLSYNKISVINK------TAFRDTLHLELLILSFNNITYFEDSEIFSSL---KS 172
LK L LS N+ I + L+ L LS N + + + SL S
Sbjct: 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDGCGVLESLLRSSS 109
Query: 173 LRILKLDNN----QILDVPNNVLSNLPHQSLHYLYLNENLIE----TVLDNSFPFTLTNL 224
L+ LKL+NN + L + L +LP +L L L N +E L + +L
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRA-NRDL 167
Query: 225 HTLALSSNIISFINESSFVTL-------RTLHSLDLSNNNLSAIPTKQLS----KLSALV 273
L L++N I ++ L L LDL+NN L+ L+ L +L
Sbjct: 168 KELNLANN---GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224
Query: 274 NLDLSGNNFSNIDSVAFKSLF---SLKLVKINL 303
L+L NN ++ + A S ++ L+ ++L
Sbjct: 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257
Score = 28.5 bits (64), Expect = 9.5
Identities = 41/183 (22%), Positives = 57/183 (31%), Gaps = 34/183 (18%)
Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLH----LELLILSFNN---ITYFEDSEI- 166
+ L L+ L L N + A L L+ L LS N I S +
Sbjct: 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75
Query: 167 -FSSLKSLRILKLDNNQILDVPNNVLSNLPH-QSLHYLYLNENLIETVLDNSFPFTLTNL 224
+ L+ L L +N + VL +L SL L LN N + D L
Sbjct: 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG---DRGLRLLAKGL 132
Query: 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGN 280
L + L L L N L + L+K L L+L+ N
Sbjct: 133 KDLPPA-----------------LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175
Query: 281 NFS 283
Sbjct: 176 GIG 178
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 40.2 bits (95), Expect = 4e-04
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKL 408
++ ++I AF SLK I L +L SI AF + L ++ I +L +
Sbjct: 20 SSVTSIGEYAFSGCTSLK--SITLPSSLTSIGSYAFYNCSSLTSITIPS--SLTSIGEYA 75
Query: 409 FQGNTNLKSVSLKGN 423
F ++L S+++ N
Sbjct: 76 FSNCSSLTSITIPSN 90
Score = 36.0 bits (84), Expect = 0.011
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKL 408
++ ++I S AF + L I + +L SI + AF + L ++ I NL + S
Sbjct: 43 SSLTSIGSYAFYN--CSSLTSITIPSSLTSIGEYAFSNCSSLTSITIPS--NLTTIGSYA 98
Query: 409 FQGNTNLKSVSL 420
F N +LKS+++
Sbjct: 99 FS-NCSLKSITI 109
Score = 32.5 bits (75), Expect = 0.17
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG 411
++I AF + L I + ++ SI + AF L+++ + +L + S F
Sbjct: 1 TSIGDYAFYNC---SLTSITIPSSVTSIGEYAFSGCTSLKSITLPS--SLTSIGSYAFYN 55
Query: 412 NTNLKSVSL 420
++L S+++
Sbjct: 56 CSSLTSITI 64
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 38.6 bits (90), Expect = 0.010
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
L +L ++ LS N I S ++ +L LDLS N+ + + L +L++L L+L+GN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 281 NFS 283
+ S
Sbjct: 501 SLS 503
Score = 36.3 bits (84), Expect = 0.045
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
LR L S++LS N++ L +++L LDLS N+F+ + L SL+++ +N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498
Score = 30.9 bits (70), Expect = 2.0
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
L LDN + N +S L H L + L+ N I + S ++T+L L LS N +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFN 479
Query: 236 FINESSFVTLRTLHSLDLSNNNLS 259
S L +L L+L+ N+LS
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLS 503
Score = 30.2 bits (68), Expect = 4.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L+S++LS N I + L L++SYN + ++ L L+ L+L+ N +S
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Score = 30.2 bits (68), Expect = 4.1
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310
L L N L +SKL L +++LSGN+ + S+ SL+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469
Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS 352
L L + SIP SL L +L+ L+L+GN+ S
Sbjct: 470 ----VLDLSYNSFNGSIPE--SLGQLTSLR--ILNLNGNSLS 503
Score = 29.0 bits (65), Expect = 8.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L ++N+S N I + + L+ LDLSYN +
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 33.6 bits (78), Expect = 0.012
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA 289
L +LDLSNN ++ +P LS L L LDLSGN +++ ++
Sbjct: 3 LETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSPLS 42
Score = 29.8 bits (68), Expect = 0.28
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L L++S N+I+ L L L+TLDLS NKI+
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKIT 36
Score = 29.0 bits (66), Expect = 0.55
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
+LE L LS N IT S+L +L L L N+I D+
Sbjct: 2 NLETLDLSNNQITDLPP---LSNLPNLETLDLSGNKITDLSP 40
Score = 28.6 bits (65), Expect = 0.71
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP 262
TNL TL LS+N I+ + L L +LDLS N ++ +
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 27.8 bits (63), Expect = 1.7
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
+L L L NNQI D+P LSNLP +L L L+ N I +
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLP--NLETLDLSGNKITDL 38
Score = 26.7 bits (60), Expect = 4.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L+TLDLS N+I+ + + +LE L LS N IT
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLS 39
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 37.4 bits (86), Expect = 0.027
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTN-LHTLALSSNII 234
L LDNN++ +P N+ ++ LY N N + S P TL + + + LS N I
Sbjct: 204 LILDNNELKSLPENL-----QGNIKTLYANSNQL-----TSIPATLPDTIQEMELSINRI 253
Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI-----DSVA 289
+ + E L SLDL +N +S +P +L L + N+ + +
Sbjct: 254 TELPER---LPSALQSLDLFHNKISCLPENLPEELRY---LSVYDNSIRTLPAHLPSGIT 307
Query: 290 FKSLF--SLKLVKINLIPNLDSID------QPLSLSLPPLLLSLSI 327
++ SL + L P L +++ L SLPP L L +
Sbjct: 308 HLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDV 353
Score = 33.9 bits (77), Expect = 0.28
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 23/114 (20%)
Query: 45 VPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLN 104
+P +L +Q++ L N+IS + L ELR L + N I L +H + + +LN
Sbjct: 256 LPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH---LPSGITHLN 310
Query: 105 ISYNEISALSKDTFKGLK------------------ELKTLDLSYNKISVINKT 140
+ N ++AL + GLK EL+ LD+S N+I+V+ +T
Sbjct: 311 VQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPET 364
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 31.6 bits (72), Expect = 0.087
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 446 NPLHCDCNLLWL 457
NP CDC L WL
Sbjct: 1 NPFICDCELRWL 12
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 35.1 bits (81), Expect = 0.11
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 34/186 (18%)
Query: 166 IFSSLKSLRILK-----LDNNQILDVPNNVLSNLPH----QSLHYLYLNENLIETVLDNS 216
+ S K +IL L + Q L + ++ NL ++ Y + + T +
Sbjct: 576 MLSHPKGKKILPRIFRHLSDEQRLTILTMIVVNLDQLDVVKNGSYKTNEDLPLLTKRE-- 633
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ--LSKLSALV- 273
+L + L ++SF++ES F + L L ++ NN+S + T + LS L+ L+
Sbjct: 634 ----DIDLFSQTLLPILVSFVSESPFNEIIGLLGLLITRNNVSFVATTKIGLSLLTTLIS 689
Query: 274 ------------NLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPL 321
+L ++ I +V F SL KL I P SI +
Sbjct: 690 RAELIKQDGPVSAEELE--TWNEIYNVLFTSLEESKLAAI--FPPDASIGSGDDAYVWQF 745
Query: 322 LLSLSI 327
L SL++
Sbjct: 746 LASLAL 751
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 34.7 bits (79), Expect = 0.19
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 420 LKGNSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWL 457
+ N +S +E L +S +DLS NP CDC L L
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARL 40
Score = 32.0 bits (72), Expect = 1.1
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSI 310
D+SNN +S I + L L +DLSGN F +A K VK+ P
Sbjct: 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKV-RQPEAALC 59
Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
P +L+ PL L IPL S + C + + SG + + V F +
Sbjct: 60 AGPGALAGQPL---LGIPLLDSGCDEEYVACLKDNSSGGGAARSELVIFSA 107
>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain.
Length = 33
Score = 28.4 bits (64), Expect = 0.81
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQ 54
CP+ C C + C+ GL VP+ L P+
Sbjct: 1 ACPAPCNCSGTAV--DCSGRGLTEVPLDLPPDTT 32
>gnl|CDD|191115 pfam04862, DUF642, Protein of unknown function, DUF642. This
family represents a conserved region found in a number
of uncharacterized plant proteins.
Length = 323
Score = 31.5 bits (72), Expect = 1.1
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 285 IDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLS-------LPPLLLSLSIPL-AFSLTPL 336
ID+VA K+L+ + K NL+ N + P LPP + PL + + L
Sbjct: 135 IDAVAIKTLYPPRKTKGNLLKNGGFEEGPYVFPNSTWGVLLPPKIEDDHSPLPGWMVESL 194
Query: 337 GTLKC 341
+K
Sbjct: 195 KAVKY 199
Score = 30.0 bits (68), Expect = 3.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 354 IDSVAFKSLFSLKLVKINLIPN 375
ID+VA K+L+ + K NL+ N
Sbjct: 135 IDAVAIKTLYPPRKTKGNLLKN 156
>gnl|CDD|215569 PLN03089, PLN03089, hypothetical protein; Provisional.
Length = 373
Score = 30.3 bits (69), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 285 IDSVAFKSLFSLKLVKINLIPN 306
ID+VA K+LF + K NL+ N
Sbjct: 178 IDAVAIKTLFPPRPTKDNLLKN 199
Score = 30.3 bits (69), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 354 IDSVAFKSLFSLKLVKINLIPN 375
ID+VA K+LF + K NL+ N
Sbjct: 178 IDAVAIKTLFPPRPTKDNLLKN 199
>gnl|CDD|213947 TIGR04334, rSAM_Clo7bot, radical SAM/SPASM domain Clo7bot peptide
maturase. In multiple strains of Clostridium botulinum,
this single radical SAM domain protein occurs next to a
tandem array of seven homologous Cys-rich small peptides
(see TIGR04333). Because this radical SAM enzyme
contains the SPASM domain, associated with peptide
modification, it is proposed to modify all seven C.
botulinum targets, hence the name Clo7bot for this
system. Suggested gene symbol is ctpM (Clostridial
Tandem Peptide Maturase) [Protein fate, Protein
modification and repair].
Length = 440
Score = 30.2 bits (68), Expect = 3.9
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 370 INLIPNLDSID-------QRAFVDNIQLETVIINENMN-LKQLPSKLFQGNTNLKSVSL 420
IN+I N++ I+ ++ VDN+ I++++ + LK L + F G N S+ L
Sbjct: 34 INIIENINHINYEELDDKEKTLVDNMLEGNYIVHDDFDELKLLKYEHFSGKFNNNSLGL 92
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 26.2 bits (59), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 121 LKELKTLDLSYNKISVINKTAFRD 144
L L+ LDLS N++S + AF+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 26.2 bits (59), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 121 LKELKTLDLSYNKISVINKTAFRD 144
L L+ LDLS N++S + AF+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|215863 pfam00332, Glyco_hydro_17, Glycosyl hydrolases family 17.
Length = 310
Score = 29.6 bits (67), Expect = 5.3
Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 33/214 (15%)
Query: 155 FNNIT----YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP-HQSLHYLYLNENLI 209
NNI Y D++ +L+ I N IL VPN+ L+ L QS N
Sbjct: 24 SNNIRRMRIYDPDTKALKALRGSGI-----NVILGVPNDDLAELAGSQS--------NAA 70
Query: 210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL 269
V DN P+ N +S SF+ + ++ N L+A K+
Sbjct: 71 SWVQDNVRPYAPKVKIRYIAVGNEVSPGTTQSFL----VPAMRNIRNALTAAGLGNKIKV 126
Query: 270 SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPL 329
S V D+ GN+F ++ +D I L+ + PLL ++
Sbjct: 127 STSVRFDILGNSFPPSYGS----------FRVETRSFMDPIIVFLAGTNAPLLANVYPYF 176
Query: 330 AFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLF 363
A+S P + + + +++LF
Sbjct: 177 AYSNNP-RDISLNYALFQPGTTVVDGGLGYQNLF 209
>gnl|CDD|225467 COG2915, COG2915, Uncharacterized protein involved in purine
metabolism [General function prediction only].
Length = 207
Score = 28.5 bits (64), Expect = 8.5
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRIL--KLDNNQ-ILDVPNNVLSNLPHQSLHY 201
L LE L+ N + ++E+ SL L KL ++ LD N +S L Q H+
Sbjct: 62 KLGLETLLSVLNASSRGLNAELTRYALSLMALERKLSKDKDALDTLGNRISQLERQLEHF 121
Query: 202 LYLNENLIET 211
+E ++ T
Sbjct: 122 DLQSETMLST 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.380
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,278,459
Number of extensions: 2812652
Number of successful extensions: 2991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2866
Number of HSP's successfully gapped: 115
Length of query: 608
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 505
Effective length of database: 6,369,140
Effective search space: 3216415700
Effective search space used: 3216415700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.3 bits)