RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3330
(608 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 243 bits (622), Expect = 6e-74
Identities = 105/516 (20%), Positives = 170/516 (32%), Gaps = 140/516 (27%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP RC+C Q C VP + E R LDL
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTE-----------------------TRLLDL 39
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N+I L F L L ++ N +SA+ F L L+TL L N++ +I
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F +L L +S N I D +F L +L+ L++ +N ++ + + S L SL
Sbjct: 100 FTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLN--SLEQ 156
Query: 202 LYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
L L + + ++ + L L L L I+ I + SF L L L++S+
Sbjct: 157 LTLEKCNLTSIPTEAL-SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPL 321
T L +L ++ N + + +A + L L+
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR------------------------ 251
Query: 322 LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ 381
L+LS N S I+ L L+ +++
Sbjct: 252 ---------------------FLNLSYNPISTIEGSMLHELLRLQEIQLV---------- 280
Query: 382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISF 440
L + F+G L+ +++ GN L+ LE S F + +
Sbjct: 281 ----------------GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 441 LDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIK 500
L L NPL CDC LLW++ +
Sbjct: 325 LILDSNPLACDCRLLWVF-----------------------------------------R 343
Query: 501 NNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCE 536
L C++P ++G E K P+ +
Sbjct: 344 RRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNY 379
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 195 bits (497), Expect = 4e-56
Identities = 79/281 (28%), Positives = 123/281 (43%), Gaps = 9/281 (3%)
Query: 4 FLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRI 63
++ C + A + + CPS C C +Q + CT GL VP + + + L EN I
Sbjct: 29 WILCAAIAAAASAGPQN-CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNI 87
Query: 64 SNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
+ T L L L N I + F L L + N ++ + F+ L
Sbjct: 88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILS-FNNITYFEDSEIFSSLKSLRILKLDNN 181
+L+ L L N I I AF L L L + Y + F L +L+ L L
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC 206
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
I D+PN L+ L L L ++ N + SF L++L L + ++ +S I ++
Sbjct: 207 NIKDMPN--LTPLV--GLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNA 261
Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
F L +L L+L++NNLS++P + L LV L L N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
Score = 164 bits (416), Expect = 1e-44
Identities = 82/417 (19%), Positives = 136/417 (32%), Gaps = 121/417 (29%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
+ + + +S + + +T L L NNI + ++ F L L +L+L N
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS 110
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
I + + L SL+ L L +N + + +F L+ L L L +N I I +F
Sbjct: 111 IRQIEVGAFNGLA--SLNTLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPIESIPSYAF 167
Query: 243 VTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
+ +L LDL L I L L L+L N ++ L L+
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLE---- 221
Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
L++SGN+F I +F
Sbjct: 222 -----------------------------------------ELEMSGNHFPEIRPGSFHG 240
Query: 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
L SLK + + N + + F G +L ++L
Sbjct: 241 LSSLKKLWVM--------------------------NSQVSLIERNAFDGLASLVELNLA 274
Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTS 480
N+LS L F PL + L L NP +CDC++LWL ++
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLR------------------ 316
Query: 481 NTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES 537
+ T +C +P ++G + V + S C +
Sbjct: 317 ---------------------EYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSA 352
Score = 67.5 bits (165), Expect = 4e-12
Identities = 43/222 (19%), Positives = 71/222 (31%), Gaps = 56/222 (25%)
Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSA-LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
+ + LS +P + + L+L NN I + F+ L L+
Sbjct: 54 NQFSKVVCTRRGLSEVP----QGIPSNTRYLNLMENNIQMIQADTFRHLHHLE------- 102
Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
L L N+ I+ AF L S
Sbjct: 103 --------------------------------------VLQLGRNSIRQIEVGAFNGLAS 124
Query: 365 LKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL-KG 422
L + L N L I AF +L + + N ++ +PS F +L + L +
Sbjct: 125 LN--TLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL 181
Query: 423 NSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWLWILVQL 463
L ++ F L + +L+L + NL L L +L
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 190 bits (484), Expect = 3e-54
Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 31/301 (10%)
Query: 4 FLTCIFLILALTKLNKA-ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENR 62
L + L+ + + A CPS C C +Q + C L VP ++
Sbjct: 16 SLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTN---------- 65
Query: 63 ISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
R L+L N+I ++ ++F++ L L +S N I + F GL
Sbjct: 66 -------------TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL-DNN 181
L TL+L N+++ I AF L+ L L N I F+ + SLR L L +
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELK 171
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
++ + L +L YL L + + + L L L LS N +S I S
Sbjct: 172 RLSYISEGAFEGLS--NLRYLNLAMCNLREI--PNLTP-LIKLDELDLSGNHLSAIRPGS 226
Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
F L L L + + + I L +LV ++L+ NN + + F L L+ + +
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286
Query: 302 N 302
+
Sbjct: 287 H 287
Score = 162 bits (413), Expect = 2e-44
Identities = 80/417 (19%), Positives = 139/417 (33%), Gaps = 121/417 (29%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
+ + + + +T LL L N I + + F L+ L IL+L N
Sbjct: 44 QFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNH 99
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
I + + L +L+ L L +N + T+ + +F L+ L L L +N I I +F
Sbjct: 100 IRTIEIGAFNGLA--NLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPIESIPSYAF 156
Query: 243 VTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
+ +L LDL LS I LS L L+L+ N I L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLD---- 210
Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
LDLSGN+ S I +F+
Sbjct: 211 -----------------------------------------ELDLSGNHLSAIRPGSFQG 229
Query: 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
L L+ + + ++ + F +L ++L
Sbjct: 230 LMHLQKLWMI--------------------------QSQIQVIERNAFDNLQSLVEINLA 263
Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTS 480
N+L+ L F PL + + L NP +C+C++LWL ++
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIK------------------ 305
Query: 481 NTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES 537
+ + + +C++PP++KG + + +N C +
Sbjct: 306 ---------------------DMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYA 341
Score = 88.7 bits (220), Expect = 7e-19
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 59 RENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
R+S + LR L+L++ + + N KL L++S N +SA+ +
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGS 226
Query: 118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177
F+GL L+ L + ++I VI + AF + L + L+ NN+T ++F+ L L +
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIH 285
Query: 178 LDNN 181
L +N
Sbjct: 286 LHHN 289
Score = 72.9 bits (179), Expect = 8e-14
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
+ + L + + L+ I+L LDLS N ++ + +F+ L L + ++I +
Sbjct: 188 RYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
++ F L+ L ++L++N ++++ F HLE + L N
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 193 bits (493), Expect = 3e-54
Identities = 86/435 (19%), Positives = 162/435 (37%), Gaps = 32/435 (7%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLD 80
+C + +C + GL +P L + + N + + T S I L LD
Sbjct: 4 SDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
L+ +I + F+ Q++L L ++ N + +++ G K LK L IS I+
Sbjct: 64 LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
+ LE L L N+I+ + + + L++L NN I + +S+L +
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
L LN N I + +F + + N++ T+++L + +
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 261 IPTKQLSKLSA--LVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSL 316
I L + +++L + F NI S F L+ + + + L S
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS------- 295
Query: 317 SLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 376
L L TLK L LS N F N+ ++ + SL + I
Sbjct: 296 ---------------GLVGLSTLKK--LVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 377 DSIDQRAFVDNIQLETVIINENM-NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P 434
+ + L + ++ + + + ++L+S++L N L+ F
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 435 LERISFLDLSDNPLH 449
++ LDL+ L
Sbjct: 399 CPQLELLDLAFTRLK 413
Score = 169 bits (430), Expect = 2e-45
Identities = 86/421 (20%), Positives = 153/421 (36%), Gaps = 77/421 (18%)
Query: 58 LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
+ + IS + + + S++L + + S+ F + L L+++ +S L
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SG 296
Query: 118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177
GL LK L LS NK + + + + L L + N + +L++LR L
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 178 LDNNQI--LDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
L ++ I D N L NL L L L+ N ++ +F L L L+ +
Sbjct: 357 LSHDDIETSDCCNLQLRNLS--HLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLK 413
Query: 236 FIN-ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF 294
+ +S F L L L+LS++ L + L AL +L+L GN+F + SL
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
+L ++I L LS + S+I
Sbjct: 474 TLGRLEI------------------------------------------LVLSFCDLSSI 491
Query: 355 DSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN 414
D AF SL + V ++ + L +
Sbjct: 492 DQHAFTSLKMMNHVDLS--------------------------HNRLTSSSIEALSHLKG 525
Query: 415 LKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTT 473
+ ++L N +S + S P L + ++L NPL C C+ ++ + ++ +T
Sbjct: 526 IY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTED 584
Query: 474 V 474
Sbjct: 585 T 585
Score = 74.3 bits (183), Expect = 5e-14
Identities = 36/268 (13%), Positives = 70/268 (26%), Gaps = 74/268 (27%)
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
+ L S N++ I ++F L L LDL+ + I L L L+ N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 281 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLK 340
+ A +LK
Sbjct: 92 PLIFMAETALSGPKALK------------------------------------------- 108
Query: 341 CDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMN 400
L S+ID + + +L+ + L N +
Sbjct: 109 --HLFFIQTGISSIDFIPLHNQKTLE--SLYLGSN------------------------H 140
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF---PLERISFLDLSDNPLHCDCNLLWL 457
+ + LK + + N++ +L L+L+ N + +
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200
Query: 458 WILVQLQVKSTMETTTVAYEMTSNTSIS 485
+ Q + V ++ N++I
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 187 bits (478), Expect = 4e-52
Identities = 98/462 (21%), Positives = 167/462 (36%), Gaps = 39/462 (8%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
+ C + C D L VP + + I L N + + Y+ S + EL+ LD
Sbjct: 3 SLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
LS +I + + + L NL ++ N I + S +F GL L+ L K++ +
Sbjct: 63 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QS 198
+ L+ L ++ N I + FS+L +L + L N I + N L L Q
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182
Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLS--- 254
L ++ N I+ + D + F LH L L N S I ++ L LH L
Sbjct: 183 NLSLDMSLNPIDFIQDQA--FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240
Query: 255 ---NNNLSAIPTKQLSKLSALV--NLDLSGNNFSNIDSVAFKSLFSLKL-----VKINLI 304
NL + L + L+ N + D V F L ++ V I +
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 305 PNLDSIDQPLSLSLPPLLLSL-----------------SIPLAFSLTPLGTLKCDRLDLS 347
++ + SLS+ L ++F L +L LDLS
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLS--YLDLS 358
Query: 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSK 407
N S ++ L + L ++L N I F+ +L+ + + +
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
F L + + + F L ++ L ++ N
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Score = 160 bits (406), Expect = 3e-42
Identities = 82/432 (18%), Positives = 143/432 (33%), Gaps = 51/432 (11%)
Query: 48 QLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV-------LGSHNFEYQNKL 100
+ ++ + N I + I+L L L N + +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 101 LNLNISYNEISALSKDTFKGLKEL--KTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
L + +GL ++ L+Y + F ++ + L+ +I
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
Y ED + L + Q+ P L L L L N
Sbjct: 298 KYLED---VPKHFKWQSLSIIRCQLKQFPTLDLPFL-----KSLTLTMNKGSISFKKVA- 348
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRT--LHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
L +L L LS N +SF S+ L T L LDLS N + L L +LD
Sbjct: 349 --LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLD 405
Query: 277 LSGNNFSNIDSV-AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTP 335
+ + AF SL L +++ + I
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLL--YLDISYT-----------------NTKIDFDGIFLG 446
Query: 336 LGTLKCDRLDLSGNNF-SNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETV 393
L +L L ++GN+F N S F + +L ++L L+ I F +L+ +
Sbjct: 447 LTSLN--TLKMAGNSFKDNTLSNVFANTTNLT--FLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 394 IINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER-ISFLDLSDNPLHCDC 452
++ N NL L S + +L ++ N + + + ++F +L++N + C C
Sbjct: 503 NMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561
Query: 453 NLLWLWILVQLQ 464
V+ Q
Sbjct: 562 EHQKFLQWVKEQ 573
Score = 135 bits (343), Expect = 6e-34
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 10/246 (4%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE--YQNK 99
L+ P P ++++ L N+ S L LDLS N ++ G ++ N
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT-AFRDTLHLELLILSFNNI 158
L +L++S+N +S F GL+EL+ LD ++ + + + AF L L +S+ N
Sbjct: 378 LRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDV-PNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217
D IF L SL LK+ N D +NV +N +L +L L++ +E + F
Sbjct: 437 KIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT--NLTFLDLSKCQLEQISWGVF 493
Query: 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
TL L L +S N + F++ S + L +L +LD S N + +L +L
Sbjct: 494 D-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 278 SGNNFS 283
+ N+ +
Sbjct: 553 TNNSVA 558
Score = 82.8 bits (205), Expect = 8e-17
Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 72/292 (24%)
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
+ + ++ VP+++ S+ + L+ N ++ + SF + L L LS I
Sbjct: 16 YQCMDQKLSKVPDDIPSST-----KNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIE 69
Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
I + ++ L L +L L+ N + + S L++L NL ++++S L +
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 296 LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNID 355
LK K+N+ N + S +P FS L L +DLS N I
Sbjct: 130 LK--KLNVAHNF--------------IHSCKLPAYFS--NLTNLV--HVDLSYNYIQTIT 169
Query: 356 SVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL 415
+ L
Sbjct: 170 VNDLQFLRENPQ----------------------------------------------VN 183
Query: 416 KSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
S+ + N + ++ F ++ L L N + L L L V
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 181 bits (462), Expect = 4e-51
Identities = 101/460 (21%), Positives = 179/460 (38%), Gaps = 64/460 (13%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELRSLD 80
S C A C + GL VP +L V + L N I+ + + S +L+ L
Sbjct: 4 GTSECSVIGY--NAICINRGLHQVP-ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60
Query: 81 LSVNKIN-VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI--SVI 137
+ V+ ++ F + L+ L + YN+ L F GL L+ L L+ + +V+
Sbjct: 61 VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120
Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
+ F+ LE+L+L NNI + + F +++ +L L N++ + L N +
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
L L+ ++ + + + ++ +LDLS N
Sbjct: 181 HFTLLRLSSI-----------------TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 258 LSAIPTKQLSKLSALVNL-------------DLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
K+ A + NF + D+ FK L + + +L
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
+ + ++ + L+ +L L+ N + ID AF L
Sbjct: 284 KS--------KIF--------ALL-KSVFSHFTDLE--QLTLAQNEINKIDDNAFWGLTH 324
Query: 365 LKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN 423
L K+NL N L SID R F + +LE + ++ N +++ L + F G NLK ++L N
Sbjct: 325 LL--KLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381
Query: 424 SLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWL--WI 459
L + F L + + L NP C C + +L W+
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421
Score = 82.1 bits (203), Expect = 9e-17
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 8/178 (4%)
Query: 5 LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
I +L N S + K + T GLE V+T L +++I
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE------ASGVKTCDLSKSKIF 288
Query: 65 NV-HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKE 123
+ S + +L L L+ N+IN + + F LL LN+S N + ++ F+ L +
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
L+ LDLSYN I + +F +L+ L L N + D IF L SL+ + L N
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 405
Score = 54.0 bits (130), Expect = 7e-08
Identities = 53/306 (17%), Positives = 91/306 (29%), Gaps = 65/306 (21%)
Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIP 305
++ +DLS N+++ + S+L L L + I + F+ L SL
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI-------- 82
Query: 306 NLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSL 365
L L N F +++ AF L +L
Sbjct: 83 -------------------------------------ILKLDYNQFLQLETGAFNGLANL 105
Query: 366 KLVKINLIPNL---DSIDQRAFVDNIQLETVIINENMNLKQL-PSKLFQGNTNLKSVSLK 421
+ + L + F LE +++ +N N+K++ P+ F + L
Sbjct: 106 E--VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT 162
Query: 422 GNSLSHLEAS---HFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEM 478
N + + +F + + L LS L D N WL TT+
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 479 TSNTSISPG------TTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENS 532
T+ Q + N + N K KGLE V +
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV--KT 279
Query: 533 VHCESN 538
+
Sbjct: 280 CDLSKS 285
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 185 bits (473), Expect = 6e-51
Identities = 111/451 (24%), Positives = 184/451 (40%), Gaps = 34/451 (7%)
Query: 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSV 83
+C + + C+ L VP L + + L N++ + + Y +L SLD+
Sbjct: 1 KCTVSHEVAD--CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 84 NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
N I+ L + L LN+ +NE+S LS TF L L L N I I F
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
+L L LS N ++ + L++L+ L L NN+I + + L + SL L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 204 LNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF---VTLRTLHSLDLSNNNLSA 260
L+ N I+ F + L L L++ + + ++ +L LSN+ LS
Sbjct: 178 LSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 261 IPTKQLS--KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSID----- 311
K + L LDLS NN + + + +F L L+ + N I +L S
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 312 --QPLSLS-----LPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
+ L+L L SL FS L L+ L++ N+ I S F L +
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE--HLNMEDNDIPGIKSNMFTGLIN 354
Query: 365 LKLVKI--NLIPNLDSIDQRAFVD--NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
LK + + + +L ++ FV + L + + +N + ++ S F +L+ + L
Sbjct: 355 LKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDL 412
Query: 421 KGNSLSH-LEASHF-PLERISFLDLSDNPLH 449
N + L + LE I + LS N
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Score = 180 bits (459), Expect = 4e-49
Identities = 96/413 (23%), Positives = 178/413 (43%), Gaps = 28/413 (6%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
+ L+L+ N++ L + NF ++L +L++ +N IS L + + L LK L+L +N++S
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
++ F +L L L N+I +++ F K+L L L +N + L
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 196 HQSLHYLYLNENLIETVLDNSF-PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
+L L L+ N I+ + F ++L L LSSN I + F + L L L+
Sbjct: 146 --NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 255 NNNLSAIPTKQLS---KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
N L T++L +++ NL LS + S + F L L ++L N ++
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 312 QPLSLSLPPLLLSLSI-------PLAFSLTPLGTLK-------CDRLDLSGNNFSNIDSV 357
S + P L + + SL L ++ + +S + ID
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 358 AFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINEN-MNLKQLPSKLFQG--NT 413
+F+ L L+ +N+ N + I F I L+ + ++ + +L+ L ++ F ++
Sbjct: 324 SFQWLKCLE--HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 414 NLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
L ++L N +S +E+ F L + LDL N + + L +
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434
Score = 175 bits (445), Expect = 4e-47
Identities = 102/433 (23%), Positives = 166/433 (38%), Gaps = 59/433 (13%)
Query: 50 NPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFE---------YQNK 99
+ + L N ++ V + ++ +L L N I L SH+ +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
+IS + + +F+ LK L+ L++ N I I F ++L+ L LS + +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 160 YFE-DSEIFSSL--KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
+E F SL L IL L N+I + ++ S L L L L N I L
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG--HLEVLDLGLNEIGQELTGQ 424
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP--TKQLSKLSALVN 274
L N+ + LS N + +SF + +L L L L + L L
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484
Query: 275 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT 334
LDLS NN +NI+ + L L+++ + NL + + + P L
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLK---------- 533
Query: 335 PLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVI 394
L L L+L N F I FK LF LK++ +
Sbjct: 534 GLSHLH--ILNLESNGFDEIPVEVFKDLFELKIIDLG----------------------- 568
Query: 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLHCDC 452
NL LP+ +F +LKS++L+ N ++ +E F ++ LD+ NP C C
Sbjct: 569 ---LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Query: 453 -NLLWLWILVQLQ 464
++ W +
Sbjct: 626 ESIAWFVNWINET 638
Score = 161 bits (410), Expect = 2e-42
Identities = 92/411 (22%), Positives = 144/411 (35%), Gaps = 58/411 (14%)
Query: 54 QTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112
+ L N I + L +LDLS N ++ L L +S N+I A
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159
Query: 113 LSKDTFK--GLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS-- 168
L + LK L+LS N+I + F L L L+ + ++
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
+ S+R L L N+Q+ N L +L L L+ N + V ++SF + L L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFF 278
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNN---------NLSAIPTKQLSKLSALVNLDLSG 279
L N I + S L + L+L + +L I L L +L++
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339
N+ I S F L +LK LSLS L F L
Sbjct: 339 NDIPGIKSNMFTGLINLKY---------------LSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
L+L+ N S I+S AF L +L+ +D + N
Sbjct: 384 H--ILNLTKNKISKIESDAFSWL-----------GHLEVLD--------------LGLNE 416
Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLH 449
++L + ++G N+ + L N L + F + + L L L
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 177 bits (452), Expect = 3e-50
Identities = 79/407 (19%), Positives = 149/407 (36%), Gaps = 44/407 (10%)
Query: 59 RENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTF 118
R+ + L + + + + +V N + + + L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
++++ L+L+ +I I+ AF ++ L + FN I Y +F ++ L +L L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVL 124
Query: 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN 238
+ N + +P + N P L L ++ N +E + D++F T+L L LSSN ++ ++
Sbjct: 125 ERNDLSSLPRGIFHNTP--KLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD 181
Query: 239 ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL 298
S +L ++S N LS + A+ LD S N+ + + L LKL
Sbjct: 182 LSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTILKL 233
Query: 299 VKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA 358
NL + L +DLS N I
Sbjct: 234 QHNNLT---------------------DTAWLLNYPGLVE-----VDLSYNELEKIMYHP 267
Query: 359 FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSV 418
F + L+ ++ + N L+ + ++ N +L + Q L+++
Sbjct: 268 FVKMQRLE--RLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENL 323
Query: 419 SLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
L NS+ L+ S + L LS N C+ + + V
Sbjct: 324 YLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAV 368
Score = 30.0 bits (68), Expect = 2.0
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN-----TNLKSVSLKGNSLSHLE 429
N+ + L+ + ++++ ++ G N K V+ K +++ L
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 430 ASHF-PLERISFLDLSDNPLH 449
A+ ++ L+L+D +
Sbjct: 62 AALLDSFRQVELLNLNDLQIE 82
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 171 bits (436), Expect = 4e-49
Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 22 CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
CP C C+++ K+ SC GL+ VP+ + + +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAA-----------------------SQRIF 38
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINK 139
L N+I+ + + +F L L + N ++ + F GL L+ LDLS N ++ ++
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
F L L L + +F L +L+ L L +N + +P++ +L +L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--NL 155
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259
+L+L+ N I +V + +F L +L L L N ++ ++ +F L L +L L NNLS
Sbjct: 156 THLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 260 AIPTKQLSKLSALVNLDLSGNNF 282
A+PT+ L+ L AL L L+ N +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPW 237
Score = 136 bits (344), Expect = 3e-36
Identities = 68/366 (18%), Positives = 114/366 (31%), Gaps = 117/366 (31%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
+ + + L N+I VP + L L+L+ N++ + +F L L L LS
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRN--LTILWLHSNVLARIDAAAF-TGLALLEQLDLSD 89
Query: 232 N-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
N + ++ ++F L LH+L L L + L+AL L L N + F
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN 350
+ L +L L L GN
Sbjct: 150 RDLGNLT---------------------------------------------HLFLHGNR 164
Query: 351 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410
S++ AF+ L SL ++ L + + F+
Sbjct: 165 ISSVPERAFRGLHSLD--RLLL------------------------HQNRVAHVHPHAFR 198
Query: 411 GNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTM 469
L ++ L N+LS L PL + +L L+DNP CDC LW
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW----------- 247
Query: 470 ETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP 529
++ + + + CS P + G ++K +
Sbjct: 248 ---------------------------AWLQKFRGSS---SEVPCSLPQRLAGRDLKRLA 277
Query: 530 ENSVHC 535
N +
Sbjct: 278 ANDLQG 283
Score = 114 bits (287), Expect = 2e-28
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 15/222 (6%)
Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305
+ L N +S +P L L L N + ID+ AF L L+ + ++
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 306 NLDSIDQPLSLSLPPL-LLSL------SIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA 358
L S+D L L L L + L L+ L L N +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQ--YLYLQDNALQALPDDT 148
Query: 359 FKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
F+ L +L + L N + S+ +RAF L+ +++++N + + F+ L +
Sbjct: 149 FRDLGNLT--HLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMT 205
Query: 418 VSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
+ L N+LS L PL + +L L+DNP CDC LW
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 168 bits (428), Expect = 8e-48
Identities = 68/286 (23%), Positives = 114/286 (39%), Gaps = 29/286 (10%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
CPSRC C ++ C GL VP + + L N++ ++ +L L
Sbjct: 1 CPSRCSCSGTEI--RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
LS N ++ G + G LK LDLS+N + ++ +
Sbjct: 59 LSSNGLSFKG----------------------CCSQSDFGTTSLKYLDLSFNGVITMS-S 95
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
F LE L +N+ + +F SL++L L + + N + + L SL
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLE 153
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
L + N + L NL L LS + ++ ++F +L +L L++S+NN +
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
+ T L++L LD S N+ + S L +NL N
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNLTQN 258
Score = 133 bits (336), Expect = 7e-35
Identities = 67/361 (18%), Positives = 125/361 (34%), Gaps = 91/361 (25%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-LTNLHTLALS 230
S L+L++N++ +P+ V L L L L+ N + S T+L L LS
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQ--LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLSGNNFSNIDSVA 289
N + + S+F+ L L LD ++NL + + L L+ LD+S + +
Sbjct: 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 290 FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349
F L SL++ L ++ + T L L LDLS
Sbjct: 146 FNGLSSLEV---------------LKMAGNSFQENFL---PDIFTELRNLT--FLDLSQC 185
Query: 350 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF 409
+ AF SL SL+++ ++ + N L + +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMS--------------------------HNNFFSLDTFPY 219
Query: 410 QGNTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
+ +L+ + N + + ++FL+L+ N C C
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL--------- 270
Query: 468 TMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKA 527
+ IK+ L + + ++C++P D +G+ V +
Sbjct: 271 -----------------------------QWIKDQRQLLVEVERMECATPSDKQGMPVLS 301
Query: 528 V 528
+
Sbjct: 302 L 302
Score = 83.1 bits (206), Expect = 1e-17
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
Query: 58 LRENRISNV-HYTLSFYIELRSLDLSVNK-INVLGSHNFEYQNKLLNLNISYNEISALSK 115
+ + + L L ++ N F L L++S ++ LS
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
F L L+ L++S+N ++ ++ L++L S N+I + E+ SL
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252
Query: 176 LKLDNNQI 183
L L N
Sbjct: 253 LNLTQNDF 260
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 178 bits (452), Expect = 1e-47
Identities = 103/470 (21%), Positives = 175/470 (37%), Gaps = 53/470 (11%)
Query: 28 CFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKI 86
C A L VP L + ++L N I V + F +L+ L+L
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 87 NV-LGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS--VINKTAFR 143
+ + F L L++ ++I L D F+GL L L L + +S V+ FR
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
+ L L LS N I F L SL+ + +NQI V + L L ++L +
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 204 LNENLIETVLDNSF-----PFTLTNLHTLALSSNIISFI------------NESSFVTLR 246
L N + + + + PF L L +S N + S +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 247 TLHSLDLSNNNLSAIPTKQLSKL--SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
+ +N+ + L S++ +LDLS +++S F++L LK++ +
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 305 PNLDSIDQPLSLSLPPL-LLSLS------IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357
++ I L L +L+LS + + + L + +DL N+ + I
Sbjct: 301 -KINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVA--YIDLQKNHIAIIQDQ 356
Query: 358 AFKSLFSLK--------LVKINLIPNLDSIDQRA------FVDNIQLETVIINENMNLKQ 403
FK L L+ L I+ IP++ I N+ + ++EN L+
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN-RLEN 415
Query: 404 LPSKLFQGN-TNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLHC 450
L F +L+ + L N S P + L L +N L
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Score = 170 bits (433), Expect = 4e-45
Identities = 102/549 (18%), Positives = 187/549 (34%), Gaps = 105/549 (19%)
Query: 50 NPEVQTIILRENRISNVHYTLSF-------YIELRSLDLSVNKINVLGSHNF-------- 94
+ L N + + + L LD+S N V + NF
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 95 ----EYQNKLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHL 148
+ ++ ++ I ++TF GL ++ LDLS+ + +N F L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
++L L++N I D F L +L++L L N + ++ ++ LP + Y+ L +N
Sbjct: 293 KVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLP--KVAYIDLQKNH 349
Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
I + D +F F L L TL L N ++ I+ + ++ + LS N L +P L+
Sbjct: 350 IAIIQDQTFKF-LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 269 LSALVNLDLSGNNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSI 327
+ LS N N+D + F + L+++ +N S + S P L L
Sbjct: 404 NL----IHLSENRLENLDILYFLLRVPHLQILILN-QNRFSSCSGDQTPSENPSLEQL-- 456
Query: 328 PLAFSLTPLGTLKCDRLDLSGNNF-----SNIDSVAFKSLFSLKLVKINLIPN-LDSIDQ 381
L N + + F+ L L+ + L N L+S+
Sbjct: 457 -----------------FLGENMLQLAWETELCWDVFEGLSHLQ--VLYLNHNYLNSLPP 497
Query: 382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFL 441
F L + +N N L L N L+ + + N L F +S L
Sbjct: 498 GVFSHLTALRGLSLNSN-RLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFV--SLSVL 552
Query: 442 DLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKN 501
D++ N C+C L +
Sbjct: 553 DITHNKFICECELSTFINWLN-------------------------------------HT 575
Query: 502 NHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMY 561
N ++ ++ C P G+ + ++ E S ++ + + ++
Sbjct: 576 NVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635
Query: 562 FIYRKRALW 570
K +
Sbjct: 636 LTVTKFRGF 644
Score = 167 bits (424), Expect = 7e-44
Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 36/386 (9%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
+ ++ + + L + L LS+N I + ++F L+LL L
Sbjct: 9 AFYRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-L 221
D E F +L +LRIL L +++I + + L L L L + + F L
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF--HLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 222 TNLHTLALSSNIISFIN-ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA--LVNLDLS 278
L L LS N I + SF L +L S+D S+N + + +L L L L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 279 GNNFSNIDSVAFKSLFS----------------LKLVKINLIPNLDSIDQPLSLSLPPLL 322
N+ + SV + + + N S Q SL L +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 323 LSLSI-------PLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 375
+ P + L LDLS +++S F++L LK++ +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-K 301
Query: 376 LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P 434
++ I AF L+ + ++ N L +L S F G + + L+ N ++ ++ F
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Query: 435 LERISFLDLSDNPLHCDCNLLWLWIL 460
LE++ LDL DN L + + +
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDI 386
Score = 153 bits (389), Expect = 2e-39
Identities = 90/446 (20%), Positives = 158/446 (35%), Gaps = 63/446 (14%)
Query: 40 AGLEVVPIQLNPEVQTIILRENRISNVHYTL---SFYIELRSLDLSVNKINVLGSHNFEY 96
+ + + L + + I + +R LDLS + L S FE
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288
Query: 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
L LN++YN+I+ ++ + F GL L+ L+LSYN + + + F + + L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQI-----------LDVPNNVLSNLPHQ--SLHYLY 203
+I +D F L+ L+ L L +N + + + N L LP + + ++
Sbjct: 349 HIAIIQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 204 LNENLIETVLDNSFPFTLTNLHTLALSSNIISFI-NESSFVTLRTLHSLDLSNNNL---- 258
L+EN +E + F + +L L L+ N S + + +L L L N L
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467
Query: 259 -SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLS 315
+ + LS L L L+ N +++ F L +L+ + + N + L D P +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527
Query: 316 LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 375
L + LD+S N + F SL L + I
Sbjct: 528 LEI-------------------------LDISRNQLLAPNPDVFVSLSVLDITHNKFI-- 560
Query: 376 LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPL 435
+ F++ + V I + S G SL L
Sbjct: 561 -CECELSTFINWLNHTNVTIAGP----------PADIYCVYPDSFSGVSLFSLSTEGCDE 609
Query: 436 ERISFLDLSDNPLHCDCNLLWLWILV 461
E + + C L + +
Sbjct: 610 EEVLKSLKFSLFIVCTVTLTLFLMTI 635
Score = 74.1 bits (182), Expect = 6e-14
Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 30/222 (13%)
Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310
NL+ +P L+ L LS N + + +F L L+L L+
Sbjct: 9 AFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQL--------LELG 56
Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370
Q L++ + L L+ LDL + + AF+ LF L +++
Sbjct: 57 SQYTPLTIDKE----------AFRNLPNLR--ILDLGSSKIYFLHPDAFQGLFHLFELRL 104
Query: 371 --NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL 428
+ + + F + L + +++N F +LKS+ N + +
Sbjct: 105 YFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163
Query: 429 EASHF---PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
+ +SF L+ N L+ ++ W + +
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 172 bits (436), Expect = 2e-46
Identities = 79/410 (19%), Positives = 150/410 (36%), Gaps = 44/410 (10%)
Query: 56 IILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
+ R+ + L + + + + +V N + + + L
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
++++ L+L+ +I I+ AF ++ L + FN I Y +F ++ L +
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV 127
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
L L+ N + +P + N P L L ++ N +E + D++F T+L L LSSN ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPK--LTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLT 184
Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
++ S +L ++S N LS + A+ LD S N+ + + L
Sbjct: 185 HVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTI 236
Query: 296 LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNID 355
LKL NL + L +DLS N I
Sbjct: 237 LKLQHNNLT---------------------DTAWLLNYPGLVE-----VDLSYNELEKIM 270
Query: 356 SVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL 415
F + L+ ++ + N L+ + ++ N +L + Q L
Sbjct: 271 YHPFVKMQRLE--RLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRL 326
Query: 416 KSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
+++ L NS+ L+ S + L LS N C+ + + V
Sbjct: 327 ENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAV 374
Score = 133 bits (335), Expect = 4e-33
Identities = 70/327 (21%), Positives = 127/327 (38%), Gaps = 23/327 (7%)
Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS----SLKSLRILKLDNNQIL 184
YN + D+ + +I F +L + +I+ N+ +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
+P +L + + L LN+ IE + +F + L + N I ++ F
Sbjct: 65 KLPAALLDSFR--QVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--N 302
+ L L L N+LS++P L L +S NN I+ F++ SL+ +++ N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
+ ++D + SL ++S L +L ++ LD S N+ + + L
Sbjct: 182 RLTHVD-LSLIPSLF----HANVSYNLLSTLAIPIAVE--ELDASHNSINVVRGPVNVEL 234
Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
LKL NL D ++ L V ++ N L+++ F L+ + +
Sbjct: 235 TILKLQHNNL------TDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 287
Query: 423 NSLSHLEASHFPLERISFLDLSDNPLH 449
N L L P+ + LDLS N L
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHNHLL 314
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 167 bits (424), Expect = 5e-45
Identities = 78/402 (19%), Positives = 161/402 (40%), Gaps = 34/402 (8%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
++SLDLS NKI +G + L L + + I+ + D F L L+ LDLS N +S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL-DNNQILDVPNNVLSNL 194
++ + F L+ L L N + +F +L +L+ L++ + ++ + L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 195 PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
L+ L + + S ++ ++H L L + +F+ E L ++ L+L
Sbjct: 148 TS--LNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL------------VKIN 302
+ NL+ L + S + +F L L +N
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264
Query: 303 LIPNLDSIDQPLSLSLPPL----LLSLSIP-------LAFSLTPLGTLKCDRLDLSGNNF 351
+ + + + + L + + L IP L+ + L +K R+ + +
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK--RITVENSKV 322
Query: 352 SNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLP--SK 407
+ + L SL+ + + NL+ + L+T+++++N +L+ + +
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGE 381
Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
+ NL S+ + N+ + S E++ FL+LS +
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423
Score = 150 bits (380), Expect = 5e-39
Identities = 70/432 (16%), Positives = 147/432 (34%), Gaps = 44/432 (10%)
Query: 54 QTIILRENRISNVHYTLSFY--IELRSLDLS-VNKINVLGSHNFEYQNKLLNLNISYNEI 110
+ + L N + T F L++L + V + + +F L L I +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
+ K ++++ L L ++ + + + + L L N+ F+ S
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLPVD 219
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF----------- 219
+ +K + + + + L + L L+E + N
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279
Query: 220 ----TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNL 275
+ L + + + + + L + + + N+ + +P L +L L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
Query: 276 DLSGNNFSNI---DSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLL-LSLS--- 326
DLS N +S + SL+ + + N + ++ + L +L L L +S
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDISRNT 398
Query: 327 -IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385
P+ S ++ L+LS + + ++L L + N + +
Sbjct: 399 FHPMPDSCQWPEKMR--FLNLSSTGIRVVKTCIPQTLEVLDVSN-NNLDSFSL------- 448
Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLS 444
+L+ + I+ N LK LP L + + N L + F L + + L
Sbjct: 449 FLPRLQELYISRN-KLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505
Query: 445 DNPLHCDCNLLW 456
NP C C +
Sbjct: 506 TNPWDCSCPRID 517
Score = 119 bits (299), Expect = 1e-28
Identities = 50/264 (18%), Positives = 99/264 (37%), Gaps = 30/264 (11%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVHYTLSF-YIELRSLDLSVNKINVLGSHNFEYQNKL 100
L V + V + +R L + + S + K+
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS---VINKTAFRDTLHLELLILSFNN 157
+ + +++ + + LK L+ LDLS N + + N L+ L+LS N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 158 ITYFE-DSEIFSSLKSLRILKLDNNQI---------------LDVPNNVLSNLPH---QS 198
+ + EI +LK+L L + N L++ + + + Q+
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432
Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
L L ++ N + +SF L L L +S N + + ++S L + +S N L
Sbjct: 433 LEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQL 485
Query: 259 SAIPTKQLSKLSALVNLDLSGNNF 282
++P +L++L + L N +
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 92.1 bits (229), Expect = 1e-19
Identities = 54/292 (18%), Positives = 116/292 (39%), Gaps = 31/292 (10%)
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
S + + + +P+ + + + L L+ N I + NL L
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLTAA-----MKSLDLSFNKITYIGHGDLRA-CANLQVLI 56
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI-DS 287
L S+ I+ I +F +L +L LDLS+N+LS++ + LS+L L+L GN + + +
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116
Query: 288 VAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLS 347
F +L +L+ ++I + I + L L + L++
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL--------------------NELEIK 156
Query: 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINEN--MNLKQLP 405
+ N S + KS+ + + ++L + + + + + + + P
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215
Query: 406 SKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWL 457
+ + ++ +K ++ +G+ L+ + L+LS+ DC L L
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-DCTLNGL 266
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 161 bits (409), Expect = 8e-45
Identities = 78/356 (21%), Positives = 133/356 (37%), Gaps = 65/356 (18%)
Query: 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
+CP RCQC + + C+D GLE VP L P+ L
Sbjct: 23 PVCPFRCQCHLRVV--QCSDLGLEKVPKDLPPDTAL-----------------------L 57
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
DL NKI + +F+ L L + N+IS +S F L +L+ L LS N++ + +
Sbjct: 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQ 197
+ L+ L + N IT S +F+ L + +++L N + + N +
Sbjct: 118 KMPK---TLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-- 171
Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
L Y+ + + I T+ P +L L L N I+ ++ +S L L L LS N+
Sbjct: 172 KLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQ 312
+SA+ L+ L L L+ N + +++V I+ I + D
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 313 PLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN--FSNIDSVAFKSLFSLK 366
+ + L N + I F+ ++
Sbjct: 287 GYNTKKASY--------------------SGVSLFSNPVQYWEIQPSTFRCVYVRA 322
Score = 135 bits (342), Expect = 1e-35
Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 91/338 (26%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
+ LDL NKI+ I F++ +L LIL N I+ F+ L L L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKN 110
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII--SFINE 239
Q+ ++P + L L ++EN I V + F L + + L +N + S I
Sbjct: 111 QLKELPEKMPKTL-----QELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIEN 164
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
+F ++ L + +++ N++ IP L+ L L GN + +D+ + K L +L
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLA-- 219
Query: 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAF 359
+L LS N+ S +D+ +
Sbjct: 220 -------------------------------------------KLGLSFNSISAVDNGSL 236
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
+ L+ +L+ N L ++P + ++ V
Sbjct: 237 ANTPHLR------ELHLN--------------------NNKLVKVPG-GLADHKYIQVVY 269
Query: 420 LKGNSLSHLEASHFP-------LERISFLDLSDNPLHC 450
L N++S + ++ F S + L NP+
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307
Score = 119 bits (300), Expect = 8e-30
Identities = 51/225 (22%), Positives = 105/225 (46%), Gaps = 17/225 (7%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKIN--VLGSHNFEYQN 98
L+ +P ++ +Q + + EN I+ V + ++ ++L N + + + F+
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
KL + I+ I+ + + L EL L NKI+ ++ + + +L L LSFN+I
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
+ ++ ++ LR L L+NN+++ VP L++ + + +YL+ N I + N F
Sbjct: 229 SAVDN-GSLANTPHLRELHLNNNKLVKVPGG-LADHKY--IQVVYLHNNNISAIGSNDFC 284
Query: 219 FT-----LTNLHTLALSSNIISF--INESSFVTLRTLHSLDLSNN 256
+ ++L SN + + I S+F + ++ L N
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 117 bits (294), Expect = 4e-29
Identities = 60/277 (21%), Positives = 102/277 (36%), Gaps = 33/277 (11%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
LR+++ + + VP ++ + L L N I + D F L NLHTL L +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDT-----ALLDLQNNKITEIKDGDFK-NLKNLHTLILIN 85
Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291
N IS I+ +F L L L LS N L +P K L L + N + + F
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFN 142
Query: 292 SLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF 351
L + + + L PL S AF + L + ++ N
Sbjct: 143 GLNQMIV---------------VELGTNPLKSSGIENGAFQ--GMKKLS--YIRIADTNI 183
Query: 352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG 411
+ I SL L L N + +D + L + ++ N ++ + +
Sbjct: 184 TTIPQGLPPSLTELHL-DGN---KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN 238
Query: 412 NTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+L+ + L N L + + I + L +N +
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 48.5 bits (116), Expect = 3e-06
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQN------KLLNLN 104
P ++ + L N++ V L+ + ++ + L N I+ +GS++F ++
Sbjct: 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Query: 105 ISYNEI--SALSKDTFKGLKELKTLDLSYNK 133
+ N + + TF+ + + L K
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 164 bits (418), Expect = 4e-44
Identities = 88/432 (20%), Positives = 162/432 (37%), Gaps = 33/432 (7%)
Query: 26 CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVN 84
C + C + +P L + + L N + ++ + EL+ LDLS
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 85 KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144
+I + ++ + L L ++ N I +L+ F GL L+ L ++ +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QSLHYL 202
L+ L ++ N I F+ E FS+L +L L L +N+I + L L L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISF-INESSFVTLRTLHSLDLSNN---NL 258
L+ N + + + F LH L L +N S + ++ L L L N
Sbjct: 183 DLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
+ S L L NL + + +D + ++ + L+
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLD---------------YYLDDIIDLFNCLTNVS 285
Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
L+S++I + + L+L F ++ KSL L
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQ--HLELVNCKFGQFPTLKLKSLKRLTFTSNKG------ 337
Query: 379 IDQRAFVDNIQLETVIINEN-MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER 437
+ + VD LE + ++ N ++ K S+ G T+LK + L N + + ++ LE+
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 438 ISFLDLSDNPLH 449
+ LD + L
Sbjct: 398 LEHLDFQHSNLK 409
Score = 139 bits (353), Expect = 2e-35
Identities = 86/454 (18%), Positives = 156/454 (34%), Gaps = 64/454 (14%)
Query: 54 QTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHN-FEYQNKLLNLNISYNEIS 111
Q ++ E ++++ + + L+ L+++ N I F L +L++S N+I
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 112 ALSKDTFKGLKELK----TLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
++ + L ++ +LDLS N ++ I AF++ + L L L N +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCI 221
Query: 168 SSLKSLRILKL------DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
L L + +L + + + L L + ++ L L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
TN+ + +L S I + + S+ L+L N PT +L L L + N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNK 336
Query: 282 FSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQPLSLSLPPLLLS----LSIPLAFS 332
N S L SL+ + ++ D + SL L LS +++ F
Sbjct: 337 GGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFL 393
Query: 333 LTPLGTLKCDRLDLSGNNFSNIDSV-AFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQL 390
L L+ LD +N + F SL +L +++ F L
Sbjct: 394 --GLEQLE--HLDFQHSNLKQMSEFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSL 447
Query: 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF----------------- 433
E + + N + +F NL + L L L + F
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 434 --------PLERISFLDLSDNPLHCDCN-LLWLW 458
L + + L NP C C + +L
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541
Score = 107 bits (270), Expect = 8e-25
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Query: 51 PEVQTIILRENRISNVH---YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
P ++ + L N +S + L+ LDLS N + + S NF +L +L+ +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 405
Query: 108 NEISALSK-DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI 166
+ + +S+ F L+ L LD+S+ V F LE+L ++ N+ +I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
F+ L++L L L Q+ + ++L SL L + N +++V D F LT+L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMASNQLKSVPDGIFD-RLTSLQK 522
Query: 227 LALSSN 232
+ L +N
Sbjct: 523 IWLHTN 528
Score = 82.8 bits (205), Expect = 9e-17
Identities = 57/278 (20%), Positives = 98/278 (35%), Gaps = 68/278 (24%)
Query: 190 VLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLH 249
+ NLP S L L+ N + + SF L L LS I I + ++ +L L
Sbjct: 22 IPDNLP-FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 250 SLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309
+L L+ N + ++ S LS+L L N +++++ L +LK ++N+ NL
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHNL-- 135
Query: 310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVK 369
+ S +P FS L L+ LDLS N +I + L + L+
Sbjct: 136 ------------IQSFKLPEYFS--NLTNLE--HLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 370 INLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLE 429
++L L N ++ ++
Sbjct: 180 LSL----------------------------------------------DLSLNPMNFIQ 193
Query: 430 ASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
F R+ L L +N + + L L+V
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 164 bits (418), Expect = 8e-44
Identities = 90/432 (20%), Positives = 162/432 (37%), Gaps = 33/432 (7%)
Query: 26 CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVN 84
C + C + +P L + + L N + ++ Y+ + EL+ LDLS
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 85 KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144
+I + ++ + L L ++ N I +L+ F GL L+ L ++ +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QSLHYL 202
L+ L ++ N I F+ E FS+L +L L L +N+I + L L L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISF-INESSFVTLRTLHSLDLSNNNLS-- 259
L+ N + + + F LH L L +N S + ++ L L L
Sbjct: 183 DLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 260 -AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
+ S L L NL + + +D + N + N+ S
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-----NCLTNVSSFS------- 288
Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
L+S++I + + L+L F ++ KSL L
Sbjct: 289 ---LVSVTIERVKDFSYNFGWQ--HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-- 341
Query: 379 IDQRAFVDNIQLETVIINEN-MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER 437
+ VD LE + ++ N ++ K S+ G T+LK + L N + + ++ LE+
Sbjct: 342 ----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 438 ISFLDLSDNPLH 449
+ LD + L
Sbjct: 398 LEHLDFQHSNLK 409
Score = 132 bits (334), Expect = 8e-33
Identities = 80/442 (18%), Positives = 141/442 (31%), Gaps = 81/442 (18%)
Query: 48 QLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV-------LGSHNFEYQNKL 100
Q+ ++ L N ++ + I L L L N ++ G E +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN---KTAFRDTLHLELLILSFNN 157
L + + K +GL L + + F ++ L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH-----------------QSLH 200
I +D FS + L+L N + P L +L SL
Sbjct: 294 IERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350
Query: 201 YLYLNENLIETV-LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259
+L L+ N + + F T+L L LS N + + S+F+ L L LD ++NL
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK 409
Query: 260 -AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
L L+ LD+S + + F L SL+ + + N +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE--VLKMAGN------SFQENF 461
Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
P + + L L LDLS + AF SL SL+++ ++
Sbjct: 462 LPDIFT----------ELRNLT--FLDLSQCQLEQLSPTAFNSLSSLQVLNMS------- 502
Query: 379 IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLE 436
+ N L + ++ +L+ + N + +
Sbjct: 503 -------------------HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 437 RISFLDLSDNPLHCDCNLLWLW 458
++FL+L+ N C C
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFL 565
Score = 129 bits (326), Expect = 9e-32
Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 6/261 (2%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
V N Q + L + L+ L + NK S + L+
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L+ + + G LK LDLS+N + ++ F LE L +N+
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
+ +F SL++L L + + N + + L SL L + N + L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELR 470
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
NL L LS + ++ ++F +L +L L++S+NN ++ T L++L LD S N+
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 283 SNIDSVAFKSLFSLKLVKINL 303
+ S L +NL
Sbjct: 531 MTSKKQELQHFPS-SLAFLNL 550
Score = 103 bits (258), Expect = 3e-23
Identities = 67/350 (19%), Positives = 123/350 (35%), Gaps = 57/350 (16%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
T I T +L+L SFN + + F S L++L L +I
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLDL---SFNPLRHLGSYS-FFSFPELQVLDLSRCEIQ 65
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
+ + +L H L L L N I+++ +F L++L L ++ +
Sbjct: 66 TIEDGAYQSLSH--LSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGH 122
Query: 245 LRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
L+TL L++++N + + + S L+ L +LDLS N +I + L + L+
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN--- 179
Query: 304 IPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS-NIDSVAFKSL 362
LSL L ++ P AF L L L N S N+ + L
Sbjct: 180 ----------LSLDLSLNPMNFIQPGAFKEIRLHKL-----TLRNNFDSLNVMKTCIQGL 224
Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
L++ ++ L E N L L +++++
Sbjct: 225 AGLEVHRLVL-----------------------GEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 423 NSLSHLEASH-------FPLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
L++L+ L +S L + + + + L++
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311
Score = 80.5 bits (199), Expect = 5e-16
Identities = 55/288 (19%), Positives = 99/288 (34%), Gaps = 72/288 (25%)
Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239
+P+N+ + L L+ N + + SF L L LS I I +
Sbjct: 16 ELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIED 69
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
++ +L L +L L+ N + ++ S LS+L L N +++++ L +LK
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-- 127
Query: 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAF 359
++N+ NL + S +P FS L L+ LDLS N +I
Sbjct: 128 ELNVAHNL--------------IQSFKLPEYFSN--LTNLE--HLDLSSNKIQSIYCTDL 169
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
+ L + L+ ++L
Sbjct: 170 RVLHQMPLLNLSL----------------------------------------------D 183
Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
L N ++ ++ F R+ L L +N + + L L+V
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 155 bits (394), Expect = 1e-42
Identities = 71/353 (20%), Positives = 127/353 (35%), Gaps = 60/353 (16%)
Query: 20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
A+CP C C + + C+D GL+ VP +++P+ L
Sbjct: 25 AMCPFGCHCHLRVV--QCSDLGLKAVPKEISPDTTL-----------------------L 59
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
DL N I+ L +F+ L L + N+IS + + F L++L+ L +S N + I
Sbjct: 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQ 197
L L + N I +FS L+++ +++ N + + L
Sbjct: 120 NLPS---SLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--- 172
Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
L+YL ++E + + + L+ L L N I I + L+ L L +N
Sbjct: 173 KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLS 315
+ I LS L L L L N S + + L L++V + N I + +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGV-NDFCP 286
Query: 316 LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN--FSNIDSVAFKSLFSLK 366
+ + + L N + + F+ +
Sbjct: 287 VGFGVKRAYYN----------------GISLFNNPVPYWEVQPATFRCVTDRL 323
Score = 124 bits (313), Expect = 1e-31
Identities = 66/338 (19%), Positives = 119/338 (35%), Gaps = 92/338 (27%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
+ LDL N IS + K F+ HL L+L N I+ + + FS L+ L+ L + N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISKN 112
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII--SFINE 239
++++P N+ S+L L +++N I V F L N++ + + N + S
Sbjct: 113 HLVEIPPNLPSSL-----VELRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLENSGFEP 166
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
+F L+ L+ L +S L+ IP L+ L L N I+ L
Sbjct: 167 GAFDGLK-LNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLY-- 220
Query: 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAF 359
RL L N I++ +
Sbjct: 221 -------------------------------------------RLGLGHNQIRMIENGSL 237
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
L +L+ +++L +N L ++P+ L+ V
Sbjct: 238 SFLPTLR--ELHL------------------------DNNKLSRVPAG-LPDLKLLQVVY 270
Query: 420 LKGNSLSHLEASHFP-------LERISFLDLSDNPLHC 450
L N+++ + + F + + L +NP+
Sbjct: 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308
Score = 98.9 bits (247), Expect = 8e-23
Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L L +S K+ + E L L++ +N+I A+ + +L L L +N+I
Sbjct: 174 LNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
+I + L L L N ++ LK L+++ L N I V N +
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPV- 287
Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF--INESSFVTLRTLHSLDL 253
F + ++L +N + + + ++F + ++
Sbjct: 288 --------------------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327
Query: 254 SNN 256
N
Sbjct: 328 GNY 330
Score = 82.4 bits (204), Expect = 3e-17
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKL 100
L +P L + + L N+I + L Y +L L L N+I ++ + + + L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT------LHLELLILS 154
L++ N++S + LK L+ + L N I+ + F + + L
Sbjct: 244 RELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302
Query: 155 FNNITYFE-DSEIFSSLKSLRILKLDNNQ 182
N + Y+E F + ++ N +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 145 bits (368), Expect = 7e-39
Identities = 68/336 (20%), Positives = 120/336 (35%), Gaps = 69/336 (20%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
+K+LDLS N+I+ I+ + + ++L+ L+L+ N I E + FSSL SL L L N
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNY 111
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI-ISFINESS 241
+ ++ ++ L SL +L L N +T+ + S LT L L + + + I
Sbjct: 112 LSNLSSSWFKPLS--SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
F L L L++ ++L + K L + + +L L + + S++ +++
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229
Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
DL +FS + + S
Sbjct: 230 R----------------------------------------DTDLDTFHFSELSTGETNS 249
Query: 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
L V I + +L Q+ KL + L +
Sbjct: 250 LIKK----------------------FTFRNVKITDE-SLFQVM-KLLNQISGLLELEFS 285
Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLW 456
N L + F L + + L NP C C +
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321
Score = 140 bits (354), Expect = 6e-37
Identities = 57/298 (19%), Positives = 120/298 (40%), Gaps = 37/298 (12%)
Query: 3 YFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENR 62
+ + + +I++L+K ++ + C D+ + L +P L
Sbjct: 6 WMVWVLGVIISLSK-EESSNQASLSC-DRNGICKGSSGSLNSIPSGLTEA---------- 53
Query: 63 ISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
++SLDLS N+I + + + + L L ++ N I+ + +D+F L
Sbjct: 54 -------------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN- 181
L+ LDLSYN +S ++ + F+ L L L N ++ +FS L L+IL++ N
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
+ + L L L ++ + +++ S ++ N+ L L + E
Sbjct: 161 TFTKIQRKDFAGLT--FLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIF 217
Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLS--------KLSALVNLDLSGNNFSNIDSVAFK 291
++ L+L + +L +LS K N+ ++ + + + +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Score = 42.4 bits (100), Expect = 3e-04
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 12/116 (10%)
Query: 54 QTIILRENRISNVHYTLSF-------YIELRSLDLSVNKINVLGS---HNFEYQNKLLNL 103
+IL + + + +ELR DL + L + ++ + N+
Sbjct: 201 SHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Query: 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
I+ + + K + L L+ S N++ + F L+ + L N
Sbjct: 260 KITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 148 bits (375), Expect = 1e-37
Identities = 70/411 (17%), Positives = 140/411 (34%), Gaps = 56/411 (13%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK---------DTFKGLKELK 125
+L ++L +L +LNI+ N + ++ D +++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 126 TLDLSYNKISVI-NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ YN + + + + L LL N + + E F + L LKLD NQI
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA---FGTNVKLTDLKLDYNQIE 608
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFV- 243
++P + + + L + N ++ + + ++ + ++ S N I +
Sbjct: 609 EIPEDFCAFTD--QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 244 ----TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
++ LS N + PT+ + S + + LS N ++I + K
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN--- 723
Query: 300 KINLIPNLDSIDQPLS---LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS 356
L +ID L L+ S+ F T L L +D+S N FS+ +
Sbjct: 724 -YKNTYLLTTID--LRFNKLT--------SLSDDFRATTLPYLS--NMDVSYNCFSSFPT 770
Query: 357 VAFKSLFSLKLVKINLIPNLDSIDQR-------AFVDNIQLETVIINENMNLKQLPSKLF 409
S +L + D+ R L + I N +++++ KL
Sbjct: 771 QPLNSS---QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT 826
Query: 410 QGNTNLKSVSLKGNSLSHLEASHFP---LERISFLDLSDNPLHCDCNLLWL 457
L + + N ++ + + L C+ L +
Sbjct: 827 ---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874
Score = 146 bits (370), Expect = 4e-37
Identities = 70/372 (18%), Positives = 141/372 (37%), Gaps = 45/372 (12%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIE----------LRSLDLSVNKINVLG-SHNFEYQNK 99
PE+Q++ + NR + + + ++ + N + S + + K
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
L L+ +N++ L F +L L L YN+I I + T +E L S N +
Sbjct: 575 LGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632
Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ---SLHYLYLNENLIETVLDNS 216
Y + S+ + + N+I N+ ++ + + L+ N I+
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692
Query: 217 FPFTLTNLHTLALSSNIISFINE-------SSFVTLRTLHSLDLSNNNLSAIP-TKQLSK 268
F T + + T+ LS+N+++ I E ++ L ++DL N L+++ + +
Sbjct: 693 FA-TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751
Query: 269 LSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIP 328
L L N+D+S N FS+ + S +L + D+ + P + +
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLN---SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-- 806
Query: 329 LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNI 388
SL +L + N+ +D L+ L + N SID + I
Sbjct: 807 ---SLI--------QLQIGSNDIRKVDEKLTPQLYILDIAD-N---PNISIDVTSVCPYI 851
Query: 389 QLETVIINENMN 400
+ ++ +
Sbjct: 852 EAGMYVLLYDKT 863
Score = 135 bits (342), Expect = 2e-33
Identities = 65/448 (14%), Positives = 138/448 (30%), Gaps = 42/448 (9%)
Query: 38 TDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQ 97
T +G +L P++ R+ L + L DL + IN +
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 98 NKLLNL-----NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152
+ ++L N I+ +SK + L +L+ + + + + N + E
Sbjct: 420 DSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNI-----AVDWEDAN 473
Query: 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
+ E+ +S+LK L ++L N + + L +LP L L + N +
Sbjct: 474 SDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDFLYDLP--ELQSLNIACNRGISA 530
Query: 213 LDNSFPFT--------LTNLHTLALSSNIISFI-NESSFVTLRTLHSLDLSNNNLSAIPT 263
+T + + N + +S + L LD +N + +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590
Query: 264 KQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQPLSLSL 318
L +L L N I ++ + K+ IPN+ + +
Sbjct: 591 --FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 319 PPL----LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN--- 371
+ S ++ S+ + + LS N + F + + + ++
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 372 ---LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN-TNLKSVSLKGNSLSH 427
+ N + + L T+ + N L L L ++ + N S
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS 767
Query: 428 LEASHFPLERISFLDLSDNPLHCDCNLL 455
++ + +L
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Score = 125 bits (315), Expect = 4e-30
Identities = 76/459 (16%), Positives = 139/459 (30%), Gaps = 65/459 (14%)
Query: 45 VPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103
V + N V + L + EL+ L + V G + +
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376
Query: 104 NISYNEIS-ALSKDTFKGLKELKTLDLSYNKISVINKTAF-----RDTLHLELLILSFNN 157
+ I K + L DL + I+ + R +L + N
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436
Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVP------------NNVLSNLPH-----QSLH 200
IT+ + L L+I+ N+ N + L
Sbjct: 437 ITFISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE---------SSFVTLRTLHSL 251
+ L T L + + L L +L ++ N + T +
Sbjct: 495 DVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 252 DLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDS 309
+ NNL P L K+ L LD N ++++ F + L + L N ++
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLT--DLKLDYNQIEE 609
Query: 310 IDQPLSLSLPPL-LLSLS------IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
I + + L S IP F+ + + +D S N + S+
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG--SVDFSYNKIGSEGRNISCSM 667
Query: 363 FSLK---LVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKL-------FQG 411
K + L N + F + T+I++ N + +P ++
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKN 726
Query: 412 NTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPL 448
L ++ L+ N L+ L L +S +D+S N
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765
Score = 117 bits (294), Expect = 2e-27
Identities = 48/378 (12%), Positives = 118/378 (31%), Gaps = 31/378 (8%)
Query: 78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137
+ + ++ + + ++ L+++ D L ELK L + +V
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
+ + L ++ + I + L + L + I P + +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKD 420
Query: 198 SLHYLYLNENLIETVLDNSFP---FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
S L + T LT L + +++ ++ N + +
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSD 475
Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
S L L +++L L L+ +N+ N
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ--SLNIACN-------- 525
Query: 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI-DSVAFKSLFSLKLVKINLI 373
L + LA ++ + NN S + + + L ++ +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQ--IFYMGYNNLEEFPASASLQKMVKLG--LLDCV 581
Query: 374 PN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL--EA 430
N + ++ AF N++L + ++ N ++++P ++ + N L ++
Sbjct: 582 HNKVRHLE--AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638
Query: 431 SHFPLERISFLDLSDNPL 448
+ + + +D S N +
Sbjct: 639 NAKSVYVMGSVDFSYNKI 656
Score = 108 bits (272), Expect = 8e-25
Identities = 49/263 (18%), Positives = 90/263 (34%), Gaps = 21/263 (7%)
Query: 48 QLNPEVQTIILRENRISNVHYTLSFY--IELRSLDLSVNKINVLGSHNFEYQN-----KL 100
+V+ + N++ + + + S+D S NKI G + +
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-------HLELLIL 153
+ +SYNEI + F + T+ LS N ++ I + + + L + L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735
Query: 154 SFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV--LSNLPHQSL-HYLYLNENLIE 210
FN +T D ++L L + + N P S L + H N I
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Query: 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS 270
T +L L + SN I ++E L+ LD+++N +I +
Sbjct: 796 RQWPTGI-TTCPSLIQLQIGSNDIRKVDEK---LTPQLYILDIADNPNISIDVTSVCPYI 851
Query: 271 ALVNLDLSGNNFSNIDSVAFKSL 293
L + +I +
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGI 874
Score = 28.7 bits (64), Expect = 8.0
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
+ + N I V L+ +L LD++ N + + + + Y++ +
Sbjct: 809 IQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Query: 114 SKDTFKGLK 122
G++
Sbjct: 867 RGCDALGIE 875
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 142 bits (360), Expect = 7e-37
Identities = 56/381 (14%), Positives = 124/381 (32%), Gaps = 33/381 (8%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
+ ++ + + + + + L++S N +S +S +L+ L+LS N +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFED--------------SEI-FSSLKSLRILKLD 179
L L L+ N + S + S + + + L
Sbjct: 71 YET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128
Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239
NN+I + + + YL L N I+TV + L L L N I +
Sbjct: 129 NNKITMLRDLDEGCRS--RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
L +LDLS+N L+ + + + + + L N I+ A + +L+
Sbjct: 187 QVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLE-- 240
Query: 300 KINLIPN-LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDR---LDLSGNNFSNID 355
+L N S + +++ LT +C ++
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 356 SVAFKSLFSLKLVKINLIP---NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN 412
+ L +LK + L+ + + + + + + + + ++
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRK 359
Query: 413 TNLKSVSLKGNSLSHLEASHF 433
++ K +L ++
Sbjct: 360 QAKITLEQKKKALDEQVSNGR 380
Score = 120 bits (303), Expect = 3e-29
Identities = 51/408 (12%), Positives = 120/408 (29%), Gaps = 37/408 (9%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
E + ++ ++T+ L N + L + +L + N I+ + N
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRG---QGKKN 124
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH-LELLILSFNNITYF 161
+ ++ N+I+ L ++ LDL N+I +N + LE L L +N I
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
+ L+ L L +N++ + + + ++ L N + +++ +
Sbjct: 185 KGQ---VVFAKLKTLDLSSNKLAFMGPE-FQSAA--GVTWISLRNNKL-VLIEKAL-RFS 236
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
NL L N F + ++ + + + + +
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
++ + L +LK + L LS +
Sbjct: 296 CEDLPAPFADRLIALKRKEHAL------------LSGQGSETERLECERENQARQ----- 338
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
+D + + + + LD + +L+ +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKI--TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
++ + Q L +K ++E I D+ +
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444
Score = 117 bits (295), Expect = 2e-28
Identities = 55/357 (15%), Positives = 112/357 (31%), Gaps = 34/357 (9%)
Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
+ + K ++ + + + + +++ L LS N ++ ++ + L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLE 61
Query: 175 ILKLDNNQI--------------LDVPNNVLSNLPH-QSLHYLYLNENLIETVLDNSFPF 219
+L L +N + LD+ NN + L S+ L+ N I V +
Sbjct: 62 LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG-- 119
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLS 278
+ L++N I+ + + + LDL N + + +L + L +L+L
Sbjct: 120 --QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 279 GNNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS----LSIPLAFSL 333
N ++ L +L L N + + Q + + + L + I A
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAA-GVTWISLRNNKLVLIEKALR- 234
Query: 334 TPLGTLKCDRLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLET 392
L+ DL GN F F ++ V + L ++
Sbjct: 235 -FSQNLE--HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 393 VIINENMNLKQLPSKL-FQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+L +S +G+ LE R +D
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348
Score = 103 bits (259), Expect = 1e-23
Identities = 45/311 (14%), Positives = 90/311 (28%), Gaps = 33/311 (10%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQ-NK 99
+ V + I L N+I+ + ++ LDL +N+I+ + +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
L +LN+ YN I + +LKTLDLS NK++ + F+ + + L N +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227
Query: 160 YFEDSEIFSSLKSLRILKLDNNQI---------------LDVPNNVLSNLPH------QS 198
E + ++L L N V + L
Sbjct: 228 LIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285
Query: 199 LHYLYLNENLIETV----LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
+ E + D L+ + + +D
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDAL 344
Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
+ + + A + L+ S ++ L + ++
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404
Query: 315 SLSLPPLLLSL 325
S LL ++
Sbjct: 405 EQSPLQLLRAI 415
Score = 43.7 bits (103), Expect = 1e-04
Identities = 13/169 (7%), Positives = 38/169 (22%), Gaps = 1/169 (0%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLL 101
+ + E + + + + R +D + + + +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
L + + + EL + + A + L+LL
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEM 422
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210
+ ++R + ++ + L L
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 133 bits (337), Expect = 3e-35
Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 25/256 (9%)
Query: 26 CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVN 84
C + C + +P L + + L N + ++ + EL+ LDLS
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 85 KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144
+I + ++ + L L ++ N I +L+ F GL L+ L ++ +
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYL 204
L+ L ++ N I F+ E FS+L +L L L +N+I + L L + L L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--QMPLLNL 180
Query: 205 NENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTK 264
+L LS N ++FI +F +R L L L N L ++P
Sbjct: 181 ---------------------SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDG 218
Query: 265 QLSKLSALVNLDLSGN 280
+L++L + L N
Sbjct: 219 IFDRLTSLQKIWLHTN 234
Score = 111 bits (279), Expect = 2e-27
Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 53/272 (19%)
Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
NLP S L L+ N + + SF F+ L L LS I I + ++ +L L +L
Sbjct: 24 DNLPF-STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
L+ N + ++ S LS+L L N +++++ L +LK ++N+ N
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHN----- 134
Query: 312 QPLSLSLPPLLLSLSIPLAFS-LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370
L+ S +P FS LT L + LDLS N +I + L + L+ +
Sbjct: 135 ---------LIQSFKLPEYFSNLTNL-----EHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 371 NL---IPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
+L + ++ I AF I+L+ + ++ N LK +P +F T+L+
Sbjct: 181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQ----------- 227
Query: 428 LEASHFPLERISFLDLSDNPLHCDCN-LLWLW 458
+ L NP C C + +L
Sbjct: 228 ------------KIWLHTNPWDCSCPRIDYLS 247
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 135 bits (341), Expect = 3e-35
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 6/190 (3%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFY--IELRSL 79
CP+ C C SC+ L VP L + L N +S + + L SL
Sbjct: 12 CPANCLCASN--ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
LS N +N + S F L L++S N + L + F L+ L+ L L N I V+++
Sbjct: 70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129
Query: 140 TAFRDTLHLELLILSFNNITYFEDS--EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
AF D L+ L LS N I+ F + + L L +L L +N++ +P L LP
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
Query: 198 SLHYLYLNEN 207
+ LYL+ N
Sbjct: 190 VKNGLYLHNN 199
Score = 97.2 bits (242), Expect = 4e-22
Identities = 61/267 (22%), Positives = 87/267 (32%), Gaps = 90/267 (33%)
Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
+LP L L+ N + + P LTNLH+L LS N ++FI+ +FV + L L
Sbjct: 35 QSLPS-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
DLS+N+L + S L AL L L N+ +D AF+ + L+
Sbjct: 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-------------- 139
Query: 312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN 371
+L LS N S K L
Sbjct: 140 -------------------------------KLYLSQNQISRFPVELIKDGNKLP----- 163
Query: 372 LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS 431
+L + ++ N LK+LP Q
Sbjct: 164 -----------------KLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG------------ 193
Query: 432 HFPLERISFLDLSDNPLHCDCNLLWLW 458
L L +NPL CDC L L+
Sbjct: 194 ---------LYLHNNPLECDCKLYQLF 211
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 129 bits (326), Expect = 3e-34
Identities = 48/261 (18%), Positives = 104/261 (39%), Gaps = 33/261 (12%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
C+C ++ + T ++ +P S ++L L
Sbjct: 4 SSPPCECHQEE-DFRVTCKDIQRIP------------------------SLPPSTQTLKL 38
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYNK-ISVINK 139
+ + SH F + + +S + + L +F L ++ +++ + ++ I+
Sbjct: 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL-DNNQILDVPNNVLSNLPHQS 198
A ++ L+ L + + F D S IL++ DN + +P N L ++
Sbjct: 99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE- 157
Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRT-LHSLDLSNN 256
L L N +V +F T L + L+ N ++ I++ +F + + LD+S
Sbjct: 158 TLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
Query: 257 NLSAIPTKQLSKLSALVNLDL 277
+++A+P+K L L L+ +
Sbjct: 216 SVTALPSKGLEHLKELIARNT 236
Score = 113 bits (285), Expect = 1e-28
Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 6/200 (3%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINKTAFRDTLHLELLILSFNNITYF 161
L + + + F L + + +S + + + +F + + + + +
Sbjct: 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSFPFT 220
D + L L+ L + N + P+ L + +N + ++ N+F
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST-DIFFILEITDNPYMTSIPVNAFQGL 154
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN-LSAIPTKQLSKL-SALVNLDLS 278
TL L +N + + +F + L ++ L+ N L+ I + S LD+S
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213
Query: 279 GNNFSNIDSVAFKSLFSLKL 298
+ + + S + L L
Sbjct: 214 QTSVTALPSKGLEHLKELIA 233
Score = 99.3 bits (248), Expect = 1e-23
Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 51/249 (20%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
+TL L + I AF + ++ + +S + +S F +L + +++ N +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 183 IL-DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN-IISFINES 240
L + + L LP L +L + ++ D + ++ L ++ N ++ I +
Sbjct: 92 NLTYIDPDALKELP--LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 241 SFVTLRT-LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF-SNIDSVAFKSLFSLKL 298
+F L +L L NN +++ + + L + L+ N + + ID AF ++S
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGP- 207
Query: 299 VKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA 358
LD+S + + + S
Sbjct: 208 -------------------------------------------SLLDVSQTSVTALPSKG 224
Query: 359 FKSLFSLKL 367
+ L L
Sbjct: 225 LEHLKELIA 233
Score = 87.8 bits (218), Expect = 9e-20
Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 30/248 (12%)
Query: 180 NNQILDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI-ISF 236
+ V + +P S L L E + T+ ++F L N+ + +S ++ +
Sbjct: 12 QEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQ 70
Query: 237 INESSFVTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNI-DSVAFKSLF 294
+ SF L + +++ N L+ I L +L L L + D S
Sbjct: 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
+++I P + SI L L+L L N F+++
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTL-------------------KLYNNGFTSV 171
Query: 355 DSVAFKSLFSLKLVKINLIPN--LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN 412
AF KL + L N L ID+ AF +++ ++ LPSK +
Sbjct: 172 QGYAFNGT---KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228
Query: 413 TNLKSVSL 420
L + +
Sbjct: 229 KELIARNT 236
Score = 70.8 bits (174), Expect = 7e-14
Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN-FSNIDSVAFKSLFSLKLVKINL 303
+ +L L +L IP+ S L + + +S + ++S +F +L + ++I
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 304 IPNLDSIDQPLSLSLPPL-LLSLS------IPLAFSLTPLGTLKCDRLDLSGNNF-SNID 355
NL ID LP L L + P + L+++ N + ++I
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF--ILEITDNPYMTSIP 147
Query: 356 SVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG-NT 413
AF+ L + + + L N S+ AF + +L+ V +N+N L + F G +
Sbjct: 148 VNAFQGLCNE-TLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 414 NLKSVSLKGNSLSHLEASHF 433
+ + S++ L +
Sbjct: 206 GPSLLDVSQTSVTALPSKGL 225
Score = 60.8 bits (148), Expect = 1e-10
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK 402
L L + I S AF +L ++ + +++ L ++ +F + ++ + I NL
Sbjct: 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94
Query: 403 QLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPL 448
+ + LK + + L + L+++DNP
Sbjct: 95 YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 130 bits (328), Expect = 9e-34
Identities = 51/298 (17%), Positives = 99/298 (33%), Gaps = 26/298 (8%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
+ ++ + + + + + L++S N +S +S +L+ L+LS N +
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFED--------------SEI-FSSLKSLRILKLD 179
L L L+ N + S + S + + + L
Sbjct: 71 YET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128
Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239
NN+I + + + YL L N I+TV + L L L N I +
Sbjct: 129 NNKITMLRDLDEGCRS--RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
L +LDLS+N L+ + + + + + L N I+ A + +L+
Sbjct: 187 QVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLE-- 240
Query: 300 KINLIPN-LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS 356
+L N S + +++ LT +C L +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Score = 117 bits (296), Expect = 2e-29
Identities = 51/350 (14%), Positives = 115/350 (32%), Gaps = 87/350 (24%)
Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
+ + K ++ + + + + +++ L LS N ++ ++ + L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLE 61
Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234
+L L +N + + + L +L +L L LN N ++ + ++ TL ++N I
Sbjct: 62 LLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQEL------LVGPSIETLHAANNNI 111
Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF 294
S ++ S + ++ L+NN ++ + S + LDL N ++
Sbjct: 112 SRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---- 164
Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
L+ L+L N ++
Sbjct: 165 ------AASSDTLEH----------------------------------LNLQYNFIYDV 184
Query: 355 DSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN 414
+ +L+T+ ++ N L + + FQ
Sbjct: 185 KGQVVFA---------------------------KLKTLDLSSN-KLAFMGPE-FQSAAG 215
Query: 415 LKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQ 464
+ +SL+ N L +E + + + DL N HC + ++Q
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265
Score = 36.9 bits (86), Expect = 0.015
Identities = 15/149 (10%), Positives = 40/149 (26%), Gaps = 27/149 (18%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
+T+ L N+++ + + + L NK+ ++
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI------------------------ 229
Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
+ + + L+ DL N F + + + ++ + +
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTG-QNEEECTVP 286
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYL 202
+ D+P L H+
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALGHHHH 315
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 128 bits (323), Expect = 8e-33
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 6/212 (2%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKI-SVINKTAFRDTLHL-ELLILSFNNITY 160
L ++ + K F G +L+ +++S N + VI F + L E+ I NN+ Y
Sbjct: 35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94
Query: 161 FEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSFPF 219
E F +L +L+ L + N I +P+ + L + +N+ I T+ NSF
Sbjct: 95 IN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVG 151
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
L L+ N I I+ S+F + NNNL +P S V LD+S
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
++ S ++L L+ + L +++
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 243
Score = 106 bits (266), Expect = 3e-25
Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 40/265 (15%)
Query: 22 CPSR-CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSL 79
C R C C ++ C ++ + +P L + ++ + S + +L +
Sbjct: 2 CHHRICHCSNRVF--LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 59
Query: 80 DLS--------------------------VNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
++S N + + F+ L L IS I L
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Query: 114 SKDTFKGLKELKTLDLSYN-KISVINKTAFRD-TLHLELLILSFNNITYFEDSEIFSSLK 171
+ LD+ N I I + +F + +L L+ N I +S F+ +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQ 178
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
+ DNN + ++PN+V L ++ I ++ L L + +
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASG--PVILDISRTRIHSLPSYGLE-NLKKLRARSTYN 235
Query: 232 NIISFINESSFVTLRTLHSLDLSNN 256
+ L L L+
Sbjct: 236 L----KKLPTLEKLVALMEASLTYP 256
Score = 99.1 bits (247), Expect = 9e-23
Identities = 51/315 (16%), Positives = 101/315 (32%), Gaps = 75/315 (23%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
S R+ +++ ++P+++ N L + + +F +L + +S
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNA-----IELRFVLTKLRVIQKGAFS-GFGDLEKIEISQ 63
Query: 232 N-IISFINESSFVTLRTLHSLDLSN-NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA 289
N ++ I F L LH + + NNL I + L L L +S ++ V
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123
Query: 290 FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349
L+ I N+ +I++ + L + L L+ N
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-------------------WLNKN 164
Query: 350 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF 409
I + AF QL+ + +++N NL++LP+ +F
Sbjct: 165 GIQEIHNSAFNGT--------------------------QLDELNLSDNNNLEELPNDVF 198
Query: 410 QGNTNLKSVSLKGNSLSHLEASHF---------------------PLERISFLDLSDNPL 448
G + + + + L + L + L+ P
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPS 257
Query: 449 HCDCNLLWLWILVQL 463
HC W + +L
Sbjct: 258 HCCAFANWRRQISEL 272
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 122 bits (309), Expect = 1e-31
Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 31/244 (12%)
Query: 13 ALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF 72
AL K C C + K C+ L +P SN+
Sbjct: 3 ALCKK----DGGVCSCNNNKNSVDCSSKKLTAIP-----------------SNIPAD--- 38
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
+ LDL NK++ L S F KL L ++ N++ L FK LK L+TL ++ N
Sbjct: 39 ---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
K+ + F ++L L L N + +F SL L L L N++ +P V
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
L SL L L N ++ V + +F LT L TL L +N + + E +F +L L L
Sbjct: 155 KLT--SLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 253 LSNN 256
L N
Sbjct: 212 LQEN 215
Score = 109 bits (274), Expect = 6e-27
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
K LDL NK+S + AF L LL L+ N + + IF LK+L L + +N++
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKL 97
Query: 184 LDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFV 243
+P V L +L L L+ N ++++ F +LT L L+L N + + + F
Sbjct: 98 QALPIGVFDQLV--NLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKGVFD 154
Query: 244 TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
L +L L L NN L +P KL+ L L L N + AF SL LK++++
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Score = 83.5 bits (207), Expect = 4e-18
Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 51/240 (21%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
+ L L SN +S + +F L L L L++N L +P +L L L ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
+ F L +L
Sbjct: 97 LQALPIGVFDQLVNLA-------------------------------------------- 112
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
L L N ++ F SL L ++L N L S+ + F L+ + + N
Sbjct: 113 -ELRLDRNQLKSLPPRVFDSLTKLT--YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-Q 168
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLW 458
LK++P F T LK++ L N L + F LE++ L L +NP C CN ++++
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMA 228
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 125 bits (316), Expect = 2e-30
Identities = 58/313 (18%), Positives = 114/313 (36%), Gaps = 34/313 (10%)
Query: 70 LSFYIELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
+++ + + N + + + KL L YN++ F +L +L+
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLN 359
Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
L+YN+I+ I T +E L + N + Y + S+ + + N+I V
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419
Query: 189 NVLSNLPH-----QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE---- 239
L ++ + L+ N I F T + L ++ L N+++ I +
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLK 478
Query: 240 ---SSFVTLRTLHSLDLSNNNLSAIPTK-QLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
+F L S+DL N L+ + + + L LV +DLS N+FS + +
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT----QPLN 534
Query: 296 L-KLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
L + D+ P + SLT +L + N+ +
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-----SLT--------QLQIGSNDIRKV 581
Query: 355 DSVAFKSLFSLKL 367
+ ++ L +
Sbjct: 582 NEKITPNISVLDI 594
Score = 101 bits (253), Expect = 1e-22
Identities = 72/429 (16%), Positives = 131/429 (30%), Gaps = 64/429 (14%)
Query: 75 ELRSLDLSVNKINVLGSHNF------EYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
EL L L + V ++ + + + + D + +L
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165
Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP- 187
++ + K + R TL + NNIT+ + L LR + N+ +
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAENI 223
Query: 188 -----------NNVLSNLPH-----QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
+ L + + T L L + + ++
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVAC 282
Query: 232 N--------IISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNF 282
N + + + + + NNL P L K+ L L+ N
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342
Query: 283 SNIDSVAFKSLFSL-KLVKINLIPN-LDSIDQPLSLSLPPLL-LSLS------IPLAFSL 333
+ S KL +NL N + I + LS + IP F
Sbjct: 343 EGK----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 334 TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS-----LKLVKINLIPN-LDSIDQRAFVDN 387
+ + +D S N ++D F L + + INL N + + F
Sbjct: 399 KSVSVMS--AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 388 IQLETVIINENM------NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP--LERIS 439
L ++ + NM N + ++ F+ L S+ L+ N L+ L L +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516
Query: 440 FLDLSDNPL 448
+DLS N
Sbjct: 517 GIDLSYNSF 525
Score = 87.8 bits (218), Expect = 3e-18
Identities = 48/346 (13%), Positives = 105/346 (30%), Gaps = 33/346 (9%)
Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
+ L L S A LE+L L + E + + +
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 184 LDVPNNVLSNLPHQ---SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240
+ + P + L +N + + + S + SN I+F+
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNITFV-SK 200
Query: 241 SFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVK 300
+ + L L + N+ A + + D+ K L +++
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--LKDLTDVEVYN 258
Query: 301 INLI----------PNLDSIDQPLS----LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
+ P + I+ ++ +S L ++ + +
Sbjct: 259 CPNLTKLPTFLKALPEMQLIN--VACNRGISGEQLKDDWQALA--DAPVGEKIQ--IIYI 312
Query: 347 SGNNFSNIDSVAFKSLFSL-KLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLP 405
NN SL + KL + + N AF I+L ++ + N + ++P
Sbjct: 313 GYNNLKTFP--VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIP 369
Query: 406 SKLFQGNTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLH 449
+ ++++S N L ++ + +S +D S N +
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Score = 63.1 bits (154), Expect = 2e-10
Identities = 36/296 (12%), Positives = 82/296 (27%), Gaps = 19/296 (6%)
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
+S + L L+ + + L L L L + + P ++ +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQL--TELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 227 LALSSNII-----SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
+ +F++ L ++++ K + NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
+ + A L L+ + P + + L L
Sbjct: 195 ITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT- 252
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQR--AFVDNIQLETVI 394
+++ K+L ++L+ + L Q +++ +
Sbjct: 253 -DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 395 INENMNLKQLPSKLFQGN-TNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
I N NLK P + L + N L + +++ L+L+ N +
Sbjct: 312 IGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Score = 52.0 bits (125), Expect = 4e-07
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 11/149 (7%)
Query: 54 QTIILRENRISNVHYTLSFY--IELRSLDLSVNKI-----NVLGSHNFEYQNKLLNLNIS 106
+I LR N+++ + L +DLS N L S + +
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550
Query: 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI 166
N + L L + N I +N+ ++ +L + N + S +
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSYV 607
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLP 195
++ + L ++ D+ ++
Sbjct: 608 CPYIE-AGMYMLFYDKTQDIRGCDALDIK 635
Score = 38.9 bits (91), Expect = 0.005
Identities = 22/200 (11%), Positives = 49/200 (24%), Gaps = 22/200 (11%)
Query: 250 SLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309
+ + + A P L+ + L L G S A L L+ + L +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE--VLALGSH--G 116
Query: 310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVK 369
L P + + + R+ F L +
Sbjct: 117 EKVNERLFGPKGI--------SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168
Query: 370 INLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLE 429
++ + +T I + N+ + + + T L+ + +
Sbjct: 169 DPQQKSIKKSSR-----ITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAEN 222
Query: 430 ASHFPLERISFLDLSDNPLH 449
E + +
Sbjct: 223 ----ICEAWENENSEYAQQY 238
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 118 bits (298), Expect = 2e-29
Identities = 76/398 (19%), Positives = 156/398 (39%), Gaps = 58/398 (14%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
T+ I+ + + E L + + E + L ++ +++++
Sbjct: 3 ATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASI 59
Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
+ L L+ L+L+ N+I+ I + + + L L + N IT +L +L
Sbjct: 60 QG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISA---LQNLTNL 112
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
R L L+ + I D+ L+NL ++ L L N + L +T L+ L ++ +
Sbjct: 113 RELYLNEDNISDISP--LANLT--KMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTESK 166
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
+ + + L L+SL L+ N + I L+ L++L N ++I ++
Sbjct: 167 VKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220
Query: 294 FSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF 351
L +KI N I +L + L+ L++ N
Sbjct: 221 TRLNSLKIGNNKITDLSPLANLSQLT-------------------------WLEIGTNQI 255
Query: 352 SNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410
S+I++V L L + N I ++ ++ QL ++ +N N L ++
Sbjct: 256 SDINAVKDLTKLKMLNVGS-NQISDISVLNN-----LSQLNSLFLNNN-QLGNEDMEVIG 308
Query: 411 GNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
G TNL ++ L N ++ + L ++ D ++ +
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLA-SLSKMDSADFANQVI 345
Score = 115 bits (290), Expect = 2e-28
Identities = 78/387 (20%), Positives = 159/387 (41%), Gaps = 57/387 (14%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
++ P E +L++ +++V T + L ++ K+ + EY L
Sbjct: 14 QIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI--QGIEYLTNLEY 70
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
LN++ N+I+ +S L +L L + NKI+ I +A ++ +L L L+ +NI+
Sbjct: 71 LNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS 126
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
++L + L L N L + LSN+ L+YL + E+ ++ V + LT
Sbjct: 127 P---LANLTKMYSLNLGANHNLSDLSP-LSNMT--GLNYLTVTESKVKDVTPIA---NLT 177
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
+L++L+L+ N I I S +L +LH N ++ I ++ ++ L +L + N
Sbjct: 178 DLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233
Query: 283 SNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLK 340
+++ +L L ++I N I +++++ L
Sbjct: 234 TDLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLK----------------------- 268
Query: 341 CDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENM 399
L++ N S+I +L L + L N L + D L T+ +++N
Sbjct: 269 --MLNVGSNQISDIS--VLNNLSQLN--SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN- 321
Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLS 426
++ + + + S +
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346
Score = 109 bits (274), Expect = 3e-26
Identities = 74/354 (20%), Positives = 141/354 (39%), Gaps = 37/354 (10%)
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
L I+ + D L E L ++ + + + L+++ +
Sbjct: 2 AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVA 57
Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ L +L L L+ NQI D+ LSNL L LY+ N I + S
Sbjct: 58 SIQG---IEYLTNLEYLNLNGNQITDISP--LSNLV--KLTNLYIGTNKITDI---SALQ 107
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
LTNL L L+ + IS I S L ++SL+L N+ + LS ++ L L ++
Sbjct: 108 NLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164
Query: 280 NNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338
+ ++ +A L+SL L N I ++ + SL + + +TP+
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNY-NQIEDISPLASLTSLH----YFTAYVNQITDITPVAN 219
Query: 339 LKC-DRLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVII 395
+ + L + N +++ +L L ++I N I +++++ +L+ + +
Sbjct: 220 MTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDINAVKD-----LTKLKMLNV 272
Query: 396 NENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
N + + + L S+ L N L + + L ++ L LS N +
Sbjct: 273 GSN-QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 119 bits (301), Expect = 7e-29
Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 15/394 (3%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
+ L++S N I+ L + + +KL L IS+N I L FK +EL+ LDLS+NK+
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL 194
I+ T++L+ L LSFN + F ++ L+ L L + +++L
Sbjct: 82 VKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 195 PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
+ + + + F +LH + ++ FI + S T+ L ++
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
+ LS L+ L N N + S + L + +
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI-LQLVWHTTVWYFSISNV 257
Query: 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374
L F + + + F S ++ ++ + +
Sbjct: 258 KLQGQLDFRD------FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS- 310
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF- 433
+ + + N L + T L+++ L+ N L L
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369
Query: 434 --PLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
++ + LD+S N + D L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403
Score = 101 bits (253), Expect = 7e-23
Identities = 57/350 (16%), Positives = 115/350 (32%), Gaps = 33/350 (9%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
++ L++S N IS + + L +LI+S N I Y + +F + L L L +N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN 79
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
+++ + + N L +L L+ N + + ++ L L LS+ + +
Sbjct: 80 KLVKISCHPTVN-----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 242 FVTLRTLH-SLDLSNNNLSAIPTKQLSKLSALVN--LDLSGNNFSNIDSVAFKSLFSLKL 298
L L L + L + + + F I V+ K++ +L+L
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 299 VKINLIPNLDSIDQPLSLSLPPLLLS-----------------LSIPLAFSLTPLGTLKC 341
I + + LS+ + I T +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
+ L G + SL +L + V ++ S F N+ ++ ++
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVS--- 310
Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
+ + + + N L+ + L + L L N L
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Score = 99 bits (249), Expect = 2e-22
Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 4/225 (1%)
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
Y + ++ L ++ L + + ++ + + + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
+++ L S N +T E L L L L NQ+ ++
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTV-FENCGHLTELETLILQMNQLKELSKIAEM 369
Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
+SL L +++N + +L +L +SSNI++ + LD
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427
Query: 253 LSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
L +N + +IP KQ+ KL AL L+++ N ++ F L SL+
Sbjct: 428 LHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Score = 96.9 bits (241), Expect = 2e-21
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 8/186 (4%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
+ + +V+ ++ + L+L+ S N ++ + L EL+TL L N++
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 135 SVINKTA--FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
++K A L+ L +S N+++Y E S KSL L + +N + D L
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420
Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
+ L L+ N I+++ L L L ++SN + + + F L +L +
Sbjct: 421 ----PRIKVLDLHSNKIKSIPKQVVK--LEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 253 LSNNNL 258
L N
Sbjct: 475 LHTNPW 480
Score = 95.7 bits (238), Expect = 5e-21
Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 6/209 (2%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
L + + S+ +E + + N + + + + LD S N +
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFED-SEIFSSLKSLRILKLDNNQILDVPNNVLSN 193
+ LE LIL N + +E+ + +KSL+ L + N + +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396
Query: 194 LPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253
+SL L ++ N++ + P + L L SN I I + L L L++
Sbjct: 397 WT-KSLLSLNMSSNILTDTIFRCLPPRIKVLD---LHSNKIKSIPKQVV-KLEALQELNV 451
Query: 254 SNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
++N L ++P +L++L + L N +
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 87.2 bits (216), Expect = 3e-18
Identities = 66/409 (16%), Positives = 144/409 (35%), Gaps = 44/409 (10%)
Query: 76 LRSLDLSVNKI------NVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129
L+ L LS + + + + L + L + L + +
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN- 188
++ I ++ + + + +N + S + + ++ L N I N
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 189 --NVLSNLPHQSLHYLYLNEN-LIETVLDNSFPFTLTNLHTLA---LSSNIISFINESSF 242
+L + H ++ Y ++ L + F ++ T+L L+ + S++ F +
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
++ + + + + SK+S ++LD S N ++ L L+
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE----- 351
Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNID-SVAFKS 361
+L L L +A T + +L+ +LD+S N+ S +
Sbjct: 352 ------------TLILQMNQLKELSKIAEMTTQMKSLQ--QLDISQNSVSYDEKKGDCSW 397
Query: 362 LFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
SL +N+ N L R ++ + ++ N +K +P ++ + L+ +++
Sbjct: 398 TKSLL--SLNMSSNILTDTIFRCLPPR--IKVLDLHSN-KIKSIPKQVVKL-EALQELNV 451
Query: 421 KGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNL---LWLWILVQLQV 465
N L + F L + + L NP C C L W+ Q
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 500
Score = 58.0 bits (140), Expect = 5e-09
Identities = 47/327 (14%), Positives = 92/327 (28%), Gaps = 29/327 (8%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
L +S N IS + S ++L L L +S+N + + L LDLS N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
I +L L L S + +L + ++S L
Sbjct: 81 LVKISCHPTVNLKHLDL----------SFNAFDALPICKEFGNMS-----QLK------- 118
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVII-NENMN 400
L LS + + L K++ + + D D I+ N
Sbjct: 119 -FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWI 459
+ + NL+ ++K + + L ++ N + W
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 460 LVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPD 519
+ LQ+ +++ + +K +V + P
Sbjct: 238 IRILQLVWHTTVWYF--SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293
Query: 520 IKGLEVKAVPENSVHCESNTMLYVLSF 546
+ + M+++L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCP 320
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 119 bits (299), Expect = 2e-28
Identities = 70/382 (18%), Positives = 134/382 (35%), Gaps = 28/382 (7%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
++L LS N I+ L + + ++L L +S+N I +L F ++L+ LD+S+N++
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
I+ L L LSFN+ + F +L L L L + + +++L
Sbjct: 114 NISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL- 169
Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255
H S L L I+ S T + L N S + +++ L L LSN
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN--SLFSVQVNMSVNALGHLQLSN 227
Query: 256 NNLSAIPTKQLS-------KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 308
L+ ++L + L+N+ L + SV F + V+ I NL
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 309 SIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV 368
+ F+ + + F + + +
Sbjct: 288 -------------ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334
Query: 369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL 428
+++ + I + +N + L+++ L+ N L +
Sbjct: 335 MLSIS-DTPFIHMVCPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNF 392
Query: 429 EASHFPLERISFLDLSDNPLHC 450
+ +S L+ D L+
Sbjct: 393 FKVALMTKNMSSLETLDVSLNS 414
Score = 92.6 bits (230), Expect = 5e-20
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 6/226 (2%)
Query: 73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
Y+ + +L ++ +++ L+ ++ + + E+ LS +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
I+ L + N T + S+LK L+ L L N + + L
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398
Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL-RTLHSL 251
SL L ++ N + + + ++ L LSSN+++ S F L + L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVL 455
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
DL NN + +IP K ++ L AL L+++ N ++ F L SL+
Sbjct: 456 DLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
Score = 87.6 bits (217), Expect = 2e-18
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 8/185 (4%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
E+ LS++ + + LN + N + LK L+TL L N +
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Query: 135 SVINKTAFRDT--LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
K A LE L +S N++ + +S+ +L L +N + +V
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFR 446
Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
LP + + L L+ N I + + L L L ++SN + + + F L +L +
Sbjct: 447 CLPPK-VKVLDLHNNRIMS-IPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 253 LSNNN 257
L +N
Sbjct: 504 LHDNP 508
Score = 86.1 bits (213), Expect = 9e-18
Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 6/220 (2%)
Query: 64 SNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKE 123
Y+ + L + + ++ +S ++ +
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354
Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED-SEIFSSLKSLRILKLDNNQ 182
L+ + N + L+ LIL N + F + + ++ SL L + N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
+ + +S+ L L+ N++ + P + L L +N I I +
Sbjct: 415 LNSHAYDRTCAWA-ESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIMSIPKD-V 469
Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
L+ L L++++N L ++P +L++L + L N +
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Score = 83.8 bits (207), Expect = 4e-17
Identities = 61/418 (14%), Positives = 132/418 (31%), Gaps = 64/418 (15%)
Query: 54 QTIILRENRISNV-------HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS 106
+ L + + + ++L S + + L N + + + N
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208
Query: 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNN--ITYFEDS 164
++ +S + L +L + L+ + T LL ++ + T+
Sbjct: 209 FSVQVNMSVNALGHL-QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 165 EIFSSLKSLRI--LKLDNNQILDVPNN---VLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
++F + L + N I + + S +SL ++ + + +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
++ LS + FI+ + + L+ + N + + S L L L L
Sbjct: 328 -FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386
Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339
N N VA + L +++ N SL + A S+
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLN----------SLNSHAYDRTCAWAESIL----- 431
Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
L+LS N + F+ L +++ + ++ N
Sbjct: 432 ---VLNLSSNM---LTGSVFRCL------------------------PPKVKVLDLHNN- 460
Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLW 456
+ +P L+ +++ N L + F L + ++ L DNP C C +
Sbjct: 461 RIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
Score = 35.6 bits (82), Expect = 0.050
Identities = 42/223 (18%), Positives = 58/223 (26%), Gaps = 80/223 (35%)
Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
+L LS N++S + +S LS L L LS N ++D F L+
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE--------- 103
Query: 307 LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLK 366
LD+S N NI SL L
Sbjct: 104 ------------------------------------YLDVSHNRLQNISCCPMASLRHLD 127
Query: 367 LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLP-SKLFQGNTNLKSVSLKGNSL 425
L + LP K F T L + L
Sbjct: 128 L-----------------------------SFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 426 SHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKST 468
L L ++ L LS L + LQ+ +T
Sbjct: 159 RQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 108 bits (271), Expect = 5e-27
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C + C GL +P L + + L
Sbjct: 5 CPAACTCSNNI--VDCRGKGLTEIPTNLPETITE-----------------------IRL 39
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N I V+ F KL +++S N+IS L+ D F+GL+ L +L L NKI+ + K+
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
F L+LL+L+ N I + F L +L +L L +N++ + S L ++
Sbjct: 100 FEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR--AIQT 156
Query: 202 LYLNEN 207
++L +N
Sbjct: 157 MHLAQN 162
Score = 86.2 bits (214), Expect = 2e-19
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210
+ L N I FS K LR + L NNQI ++ + L L+ L L N I
Sbjct: 37 IRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRS--LNSLVLYGNKIT 93
Query: 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS 270
+ + F L +L L L++N I+ + +F L L+ L L +N L I S L
Sbjct: 94 ELPKSLFE-GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 271 ALVNLDLSGNNF 282
A+ + L+ N F
Sbjct: 153 AIQTMHLAQNPF 164
Score = 80.8 bits (200), Expect = 1e-17
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
++ ++L+ N I +P S L + L+ N I + ++F L +L++L L
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYG 89
Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291
N I+ + +S F L +L L L+ N ++ + L L L L N I F
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 292 SLFSLK 297
L +++
Sbjct: 150 PLRAIQ 155
Score = 75.1 bits (185), Expect = 1e-15
Identities = 57/290 (19%), Positives = 82/290 (28%), Gaps = 113/290 (38%)
Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310
+ L N + IP S L +DLS N S + AF+ L SL
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN------------- 83
Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370
L L GN + + F+ LFSL+L+ +
Sbjct: 84 --------------------------------SLVLYGNKITELPKSLFEGLFSLQLLLL 111
Query: 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
N N + L FQ NL +SL N L +
Sbjct: 112 N--------------AN------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Query: 431 SHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTT 489
F PL I + L+ NP CDC+L WL
Sbjct: 146 GTFSPLRAIQTMHLAQNPFICDCHLKWLA------------------------------- 174
Query: 490 TEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNT 539
D + N I + +C+SP + + + C +
Sbjct: 175 ------DYLHTN----PIETSGARCTSPRRLANKRIGQIKSKKFRCSAAA 214
Score = 67.0 bits (164), Expect = 8e-13
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
+NLP +++ + L +N I+ + +F L + LS+N IS + +F LR+L+SL
Sbjct: 28 TNLP-ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
L N ++ +P L +L L L+ N + + AF+ L +L L+ +
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 113 bits (284), Expect = 1e-26
Identities = 63/275 (22%), Positives = 100/275 (36%), Gaps = 23/275 (8%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
I I + + E +L + N + + + ++I ++
Sbjct: 2 GETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV 58
Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
+ L + L L+ NK++ I + +L L L N I LK L
Sbjct: 59 QG--IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS---LKDLKKL 111
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
+ L L++N I D+ L +LP L LYL N I + + LT L TL+L N
Sbjct: 112 KSLSLEHNGISDING--LVHLP--QLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ 164
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
IS I L L +L LS N++S + + L+ L L L+L N +L
Sbjct: 165 ISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 220
Query: 294 FSLKLVK--INLIPNLDSIDQPLSLSLPPLLLSLS 326
VK + + I P + L
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255
Score = 110 bits (277), Expect = 1e-25
Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 23/284 (8%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
E L++ +++ T + + + + + I + +Y + L ++ N++
Sbjct: 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 77
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
+ + LK L L L NKI + ++ +D L+ L L N I+ D L
Sbjct: 78 TDIK--PLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS---DINGLVHL 130
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
L L L NN+I D+ LS L L L L +N I ++ + LT L L LS
Sbjct: 131 PQLESLYLGNNKITDITV--LSRLT--KLDTLSLEDNQISDIVPLA---GLTKLQNLYLS 183
Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
N IS + + L+ L L+L + P S L + + + + ++
Sbjct: 184 KNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241
Query: 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT 334
K N+ +L +S + F
Sbjct: 242 DG----DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 281
Score = 96.3 bits (239), Expect = 4e-21
Identities = 65/328 (19%), Positives = 115/328 (35%), Gaps = 47/328 (14%)
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
+ I + D E +L ++ + ++ +I + ++I
Sbjct: 1 MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK 56
Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ L ++ L L+ N++ D+ L+NL + L +L+L+EN I+ + S
Sbjct: 57 SVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKN--LGWLFLDENKIKDL---SSLK 106
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
L L +L+L N IS I + V L L SL L NN ++ I LS+L+ L L L
Sbjct: 107 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED 162
Query: 280 NNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338
N S+I +A L +L L K N I +L +L L
Sbjct: 163 NQISDIVPLAGLTKLQNLYLSK-NHISDLR-----------------------ALAGLKN 198
Query: 339 LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVK--INLIPNLDSIDQRAFVDNIQLETVIIN 396
L L+L N +L VK + + I + ++ +
Sbjct: 199 LD--VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256
Query: 397 ENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
+ + + +
Sbjct: 257 FTNEVSFIFYQPVTIGKAKARFHGRVTQ 284
Score = 55.1 bits (132), Expect = 4e-08
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
Query: 46 PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
+ P+++++ L N+I+++ LS +L +L L N+I+ + KL NL +
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYL 182
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
S N IS L GLK L L+L + + + + + ++ E
Sbjct: 183 SKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240
Query: 166 IFSSLKSLRILKLDNNQILDV 186
+ + +V
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEV 261
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 111 bits (279), Expect = 3e-26
Identities = 88/407 (21%), Positives = 165/407 (40%), Gaps = 40/407 (9%)
Query: 46 PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
++ + I N+++++ L +L + ++ N+I + L L +
Sbjct: 63 GVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTL 119
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
N+I+ + K L L L+LS N IS I +A L+ L N +T D +
Sbjct: 120 FNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT---DLK 171
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
++L +L L + +N++ D+ L+ L +L L N I + + LTNL
Sbjct: 172 PLANLTTLERLDISSNKVSDISV--LAKLT--NLESLIATNNQISDI---TPLGILTNLD 224
Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
L+L+ N + I + +L L LDL+NN +S + LS L+ L L L N SNI
Sbjct: 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280
Query: 286 DSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-D 342
L +L +++ N + ++ I +L+ L+L ++P+ +L
Sbjct: 281 S--PLAGLTALTNLELNENQLEDISPISNLKNLT----YLTLYFNNISDISPVSSLTKLQ 334
Query: 343 RLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
RL N S++ S+A ++ L N I +L + ++ + +N+
Sbjct: 335 RLFFYNNKVSDVSSLANLTNINWLSAGH-NQISDLTPLAN-----LTRITQLGLNDQ-AW 387
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
P N ++ + A+ + D++ N
Sbjct: 388 TNAPVNYKA-NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433
Score = 108 bits (271), Expect = 3e-25
Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 42/398 (10%)
Query: 55 TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALS 114
I ++ I+ + +T + E L + + + +++ L I ++
Sbjct: 6 ATITQDTPINQI-FTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62
Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
+ L L ++ S N+++ I T ++ L ++++ N I D ++L +L
Sbjct: 63 --GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIA---DITPLANLTNLT 115
Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234
L L NNQI D+ L NL +L+ L L+ N I + S LT+L L+ + +
Sbjct: 116 GLTLFNNQITDIDP--LKNLT--NLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVT 168
Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSL 293
L TL LD+S+N +S I L+KL+ L +L + N S+I + +L
Sbjct: 169 DLKP---LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 294 FSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL-KCDRLDLSGNNFS 352
L L N + ++ ++ +L+ L L+ +L PL L K L L N S
Sbjct: 224 DELSLNG-NQLKDIGTLASLTNLT----DLDLANNQISNLAPLSGLTKLTELKLGANQIS 278
Query: 353 NIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410
NI L +L +++ N + ++ I L + + N N+ +
Sbjct: 279 NIS--PLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFN-NISDISP--VS 328
Query: 411 GNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
T L+ + N +S + + L I++L N +
Sbjct: 329 SLTKLQRLFFYNNKVSDVSSLAN-LTNINWLSAGHNQI 365
Score = 97.3 bits (243), Expect = 1e-21
Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 23/287 (8%)
Query: 46 PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
+ ++++I N+IS++ L L L L+ N++ +G+ L +L++
Sbjct: 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 250
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
+ N+IS L+ GL +L L L N+IS I + L L L+ N + D
Sbjct: 251 ANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE---DIS 303
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
S+LK+L L L N I D+ +S+L L L+ N + V + LTN++
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLT--KLQRLFFYNNKVSDVSSLAN---LTNIN 356
Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
L+ N IS + + L + L L++ + P + +S +
Sbjct: 357 WLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414
Query: 286 DSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFS 332
+++ + ++ NL S +S + + FS
Sbjct: 415 ATISDGG----SYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457
Score = 92.0 bits (229), Expect = 7e-20
Identities = 83/354 (23%), Positives = 141/354 (39%), Gaps = 38/354 (10%)
Query: 100 LLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
L + I+ I+ + D L E L ++ + D + L I
Sbjct: 3 LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGI 58
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
+ L +L + NNQ+ D+ L NL L + +N N I + +
Sbjct: 59 KSIDG---VEYLNNLTQINFSNNQLTDITP--LKNLT--KLVDILMNNNQIADITPLA-- 109
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
LTNL L L +N I+ I L L+ L+LS+N +S I LS L++L L
Sbjct: 110 -NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG 164
Query: 279 GNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
N +++ +A +L L + N + ++ + + +L L + +TPLG
Sbjct: 165 -NQVTDLKPLANLTTLERLDISS-NKVSDISVLAKLTNLE----SLIATNNQISDITPLG 218
Query: 338 TLKC-DRLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVII 395
L D L L+GN +I ++A +L L L N I NL + +L + +
Sbjct: 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQISNLAPLSG-----LTKLTELKL 272
Query: 396 NENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
N + + G T L ++ L N L + L+ +++L L N +
Sbjct: 273 GAN-QISNISP--LAGLTALTNLELNENQLEDISPISN-LKNLTYLTLYFNNIS 322
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 105 bits (265), Expect = 2e-25
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 11/213 (5%)
Query: 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSL 79
IC LE +C L +P L + + L EN + L Y L L
Sbjct: 3 ICEVSKVA--SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
+L ++ L L L++S+N++ +L + L L LD+S+N+++ +
Sbjct: 61 NLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPL 117
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
A R L+ L L N + + + L L L NN + ++P +L+ L + L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLANNNLTELPAGLLNGLEN--L 174
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
L L EN + T+ F L L N
Sbjct: 175 DTLLLQENSLYTIPKGF--FGSHLLPFAFLHGN 205
Score = 102 bits (255), Expect = 3e-24
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 8/179 (4%)
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
L++S N + S T L L+L +++ + L L LS N +
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL 92
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
+ +L +L +L + N++ +P L L L LYL N ++T+
Sbjct: 93 --PLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--ELQELYLKGNELKTLPPGLLT-PT 147
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
L L+L++N ++ + L L +L L N+L IP K L L GN
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGN 205
Score = 92.1 bits (229), Expect = 9e-21
Identities = 65/295 (22%), Positives = 102/295 (34%), Gaps = 82/295 (27%)
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
S + S + D + +P +LP L+L+ENL+ T + T L
Sbjct: 6 VSKVASHLEVNCDKRNLTALP----PDLPK-DTTILHLSENLLYTFSLATLM-PYTRLTQ 59
Query: 227 LALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID 286
L L ++ + TL L +LDLS+N L ++P L AL LD+S N +++
Sbjct: 60 LNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLP 116
Query: 287 SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
A + L L+ L L
Sbjct: 117 LGALRGLGELQ---------------------------------------------ELYL 131
Query: 347 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
GN + L+ K++L N NL +LP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLE--KLSLANN------------------------NLTELPA 165
Query: 407 KLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWL--WI 459
L G NL ++ L+ NSL + F + F L NP C+C +L+ W+
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220
Score = 91.3 bits (227), Expect = 1e-20
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 10/181 (5%)
Query: 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176
+ ++ ++ + +DT +L LS N + F + L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLA-TLMPYTRLTQL 60
Query: 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
LD ++ + V LP L L L+ N + L TL L L +S N ++
Sbjct: 61 NLDRAELTKLQ--VDGTLP--VLGTLDLSHNQL-QSLPLLGQ-TLPALTVLDVSFNRLTS 114
Query: 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSL 296
+ + L L L L N L +P L+ L L L+ NN + + + L +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 297 K 297
Sbjct: 175 D 175
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 103 bits (260), Expect = 9e-25
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 21/254 (8%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
I ++ +++ T + + +L + + +Y N L+ L + N+I
Sbjct: 19 ANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
+ L+ K L ++ L+LS N + + +A ++ L L+ IT D + L
Sbjct: 76 TDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT---DVTPLAGL 128
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
+L++L LD NQI ++ L+ L +L YL + + + + L+ L TL
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLT--NLQYLSIGNAQVSDLTPLA---NLSKLTTLKAD 181
Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
N IS I S +L L + L NN +S + L+ S L + L+ +N
Sbjct: 182 DNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237
Query: 291 KSLFSLKLVKINLI 304
+L +VK
Sbjct: 238 NNLVVPNVVKGPSG 251
Score = 95.5 bits (238), Expect = 9e-22
Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 19/269 (7%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
+ V + T+ ++ + + + L L+L N+I L + K+
Sbjct: 33 DTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITE 89
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L +S N + +S GL+ +KTLDL+ +I+ + +L++L L N IT
Sbjct: 90 LELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS 145
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
+ L +L+ L + N Q+ D+ L+NL L L ++N I + S +L
Sbjct: 146 P---LAGLTNLQYLSIGNAQVSDLTP--LANLS--KLTTLKADDNKISDI---SPLASLP 195
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
NL + L +N IS + S L + L+N ++ P + L +
Sbjct: 196 NLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
Query: 283 SNIDSVAFKSLFSLKLVKINLIPNLDSID 311
+++ ++ + NL ++++
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFINNVS 282
Score = 87.4 bits (217), Expect = 4e-19
Identities = 56/276 (20%), Positives = 94/276 (34%), Gaps = 45/276 (16%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ + + ++ T L + TL ++ I + +L L L N I
Sbjct: 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
T D +L + L+L N + +V ++ L S+ L L I V +
Sbjct: 76 T---DLAPLKNLTKITELELSGNPLKNVSA--IAGLQ--SIKTLDLTSTQITDVTPLA-- 126
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
L+NL L L N I+ I S L L L + N +S + L+ LS L L
Sbjct: 127 -GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181
Query: 279 GNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
N S+I +A +L + L N I ++ + +L
Sbjct: 182 DNKISDISPLASLPNLIEVHLKN-NQISDVSPLANTSNLF-------------------- 220
Query: 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 373
+ L+ +N +L +VK
Sbjct: 221 -----IVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
Score = 69.3 bits (170), Expect = 5e-13
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 15/197 (7%)
Query: 46 PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
I ++T+ L +I++V L+ L+ L L +N+I + L L+I
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSI 158
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
++S L+ L +L TL NKIS I + +L + L N I+ D
Sbjct: 159 GNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS---DVS 211
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
++ +L I+ L N I + P +NL + + S T + +
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFYNNNLV--VPNVVKGPSGAPIAPATISDNGTYASPN 269
Query: 226 TLALSSNIISFINESSF 242
L+ N+ SFIN S+
Sbjct: 270 ---LTWNLTSFINNVSY 283
Score = 42.4 bits (100), Expect = 3e-04
Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 24/209 (11%)
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLKLV--KI 301
L + +N++ T + L + L G + I+ V +L L+L +I
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DRLDLSGNNFSNIDSVA-F 359
+ L ++ + L L L +++ + L+ LDL+ +++ +A
Sbjct: 76 TDLAPLKNLTKITELELSGNPLK-------NVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
+L L L N I N+ + L+ + I + L + L ++
Sbjct: 129 SNLQVLYLDL-NQITNISPLAG-----LTNLQYLSIGNA-QVSDLTP--LANLSKLTTLK 179
Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPL 448
N +S + L + + L +N +
Sbjct: 180 ADDNKISDISPLA-SLPNLIEVHLKNNQI 207
Score = 38.5 bits (90), Expect = 0.004
Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 62/229 (27%)
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
L N +A + ++ + + L + +L ++ I + L+ L+ L+L N
Sbjct: 18 LANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73
Query: 281 NFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339
+++ + + L+L N + N+ +I S+
Sbjct: 74 QITDLAPLKNLTKITELELSG-NPLKNVSAIAGLQSIK---------------------- 110
Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
LDL+ +++ L+ + ++ N
Sbjct: 111 ---TLDLTSTQITDVT---------------------------PLAGLSNLQVLYLDLN- 139
Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+ + G TNL+ +S+ +S L L +++ L DN +
Sbjct: 140 QITNISP--LAGLTNLQYLSIGNAQVSDLTPLA-NLSKLTTLKADDNKI 185
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 100 bits (252), Expect = 2e-24
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
CP +C+C C++ L +P + + L N + + T F +LR +
Sbjct: 5 CPEKCRCEGT--TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKI 62
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
+ S NKI + FE + + + ++ N + + FKGL+ LKTL L N+I+ +
Sbjct: 63 NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
+F + LL L N IT F +L SL L L N
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163
Score = 89.7 bits (223), Expect = 1e-20
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
L L+ N T E + IF L LR + NN+I D+ ++ + L N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG--VNEILLTSNR 92
Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
+E V F L +L TL L SN I+ + SF+ L ++ L L +N ++ +
Sbjct: 93 LENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 269 LSALVNLDLSGNNF 282
L +L L+L N F
Sbjct: 152 LHSLSTLNLLANPF 165
Score = 71.2 bits (175), Expect = 3e-14
Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNL 401
+++ S N ++I+ AF+ + +I L N L+++ + F L+T+++ N +
Sbjct: 61 KINFSNNKITDIEEGAFEGASGVN--EILLTSNRLENVQHKMFKGLESLKTLMLRSN-RI 117
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWIL 460
+ + F G ++++ +SL N ++ + F L +S L+L NP +C+C L WL
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL--- 174
Query: 461 VQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDI 520
+ + K IV N +C P +
Sbjct: 175 ----------------------------------GEWLRKK----RIVTGNPRCQKPYFL 196
Query: 521 KGLEVKAVPENSVHCESNT 539
K + ++ V C+
Sbjct: 197 KEIPIQDVAIQDFTCDDAH 215
Score = 67.0 bits (164), Expect = 9e-13
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 202 LYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
L LN N + L L + S+N I+ I E +F ++ + L++N L +
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
K L +L L L N + + + +F L S++L+ +
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137
Score = 36.2 bits (84), Expect = 0.017
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 28/111 (25%)
Query: 342 DRLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMN 400
L L+ N F+ +++ FK L +L KIN N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKL--PQLRKINFSNN------------------------K 68
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC 450
+ + F+G + + + L N L +++ F LE + L L N + C
Sbjct: 69 ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 102 bits (256), Expect = 5e-23
Identities = 59/314 (18%), Positives = 111/314 (35%), Gaps = 46/314 (14%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
PE++T+ + N+++++ +EL + + L + L L I N++
Sbjct: 81 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL 133
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
++L L+ L +S N+++ + L L N +T +
Sbjct: 134 TSLPVL----PPGLQELSVSDNQLASLPALPS----ELCKLWAYNNQLT-----SLPMLP 180
Query: 171 KSLRILKLDNNQI------------LDVPNNVLSNLPHQ--SLHYLYLNENLIETVLDNS 216
L+ L + +NQ+ L NN L++LP L L ++ N + S
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-----S 235
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
P + L L +S N ++ + L SL + N L+ +P + L LS+ ++
Sbjct: 236 LPVLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVN 290
Query: 277 LSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPL 336
L GN S A + + S +I + L +
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA--PRETRALHLAAADWLVPAREG 348
Query: 337 GTLKCDRLDLSGNN 350
DR + G
Sbjct: 349 EPAPADRWHMFGQE 362
Score = 93.0 bits (231), Expect = 6e-20
Identities = 64/351 (18%), Positives = 107/351 (30%), Gaps = 94/351 (26%)
Query: 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNN 157
N LN+ + ++ L + L + N ++ + L L +S N
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPAHITTL---VIPDNNLTSLPALPP----ELRTLEVSGNQ 92
Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217
+T L L I + +P+ L L++ N + S
Sbjct: 93 LTSLPVL--PPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLT-----SL 136
Query: 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
P L L++S N ++ + L L NN L+++P S L L +
Sbjct: 137 PVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP----MLPSGLQELSV 188
Query: 278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
S N +++ + L+ L L SLP L L
Sbjct: 189 SDNQLASLPT-LPSELYKLWAYNNRLT------------SLPALPSGLK----------- 224
Query: 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINE 397
L +SGN +++ L L +
Sbjct: 225 -----ELIVSGNRLTSLP---------------VLPSELKELMVS--------------- 249
Query: 398 NMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
L LP + L S+S+ N L+ L S L + ++L NPL
Sbjct: 250 GNRLTSLPMLP----SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Score = 92.3 bits (229), Expect = 9e-20
Identities = 75/383 (19%), Positives = 131/383 (34%), Gaps = 74/383 (19%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L++ + + L + L I N +++L EL+TL++S N+++
Sbjct: 42 NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI------------ 183
+ L L + ++ + L L + NQ+
Sbjct: 95 SLPVL-PPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTSLPVLPPGLQE 145
Query: 184 LDVPNNVLSNLPHQ--SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
L V +N L++LP L L+ N + S P + L L++S N ++ +
Sbjct: 146 LSVSDNQLASLPALPSELCKLWAYNNQLT-----SLPMLPSGLQELSVSDNQLASLPTL- 199
Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV-- 299
L+ L NN L+++P + S L L +SGN +++ L L +
Sbjct: 200 ---PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPV-LPSELKELMVSGN 251
Query: 300 KINLIPNLDSIDQPLSLS------LPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSN 353
++ +P L S LS+ LP L+ LS S T ++L GN S
Sbjct: 252 RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLS-----SET--------TVNLEGNPLSE 298
Query: 354 IDSVAFKSLFSLKLVKINLIPNLDSIDQR-------AFVDNIQLETVIINENMNLKQLPS 406
A + + S +I + L E +
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
Query: 407 KLFQGNTNLKSVSLKGNSLSHLE 429
F N + SL + LS E
Sbjct: 359 --FGQEDNADAFSLFLDRLSETE 379
Score = 41.0 bits (96), Expect = 0.001
Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 41/216 (18%)
Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL------I 304
+ S + + + + L++ + + + + +L + NL
Sbjct: 21 AEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALP 80
Query: 305 PNLDSIDQPLSLS------LPPLLLSLS--IPLAFSLTPLGTL--KCDRLDLSGNNFSNI 354
P L + L +S LP L L + LT L L +L + GN +++
Sbjct: 81 PEL----RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136
Query: 355 DSVAFKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN 412
L L + ++ +P L S +L + N L LP
Sbjct: 137 PV-LPPGLQELSVSDNQLASLPALPS----------ELCKLWAYNN-QLTSLPMLP---- 180
Query: 413 TNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+ L+ +S+ N L+ L + L +N L
Sbjct: 181 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL 213
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 98.6 bits (246), Expect = 5e-23
Identities = 55/268 (20%), Positives = 102/268 (38%), Gaps = 19/268 (7%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
++ E L++ +++ T + + + + + I + +Y +
Sbjct: 16 QIFSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTK 72
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L ++ N+++ + LK L L L NK+ + ++ +D L+ L L N I+
Sbjct: 73 LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN 128
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
L L L L NN+I D+ LS L L L L +N I + LT
Sbjct: 129 G---LVHLPQLESLYLGNNKITDITV--LSRLT--KLDTLSLEDNQISDI---VPLAGLT 178
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
L L LS N IS + + L+ L L+L + P S L + + +
Sbjct: 179 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Query: 283 SNIDSVAFKSLFSLKLVKINLIPNLDSI 310
+ ++ + VK +L + +
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEV 264
Score = 91.7 bits (228), Expect = 1e-20
Identities = 64/260 (24%), Positives = 101/260 (38%), Gaps = 17/260 (6%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
+ V + II + I +V + + + L L+ NK+ + L
Sbjct: 38 DAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGW 94
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L + N++ LS + K LK+LK+L L +N IS I LE L L N IT
Sbjct: 95 LFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--- 147
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
D + S L L L L++NQI D+ L+ L L LYL++N I + + L
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVP--LAGLT--KLQNLYLSKNHISDLRALA---GLK 200
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
NL L L S + L +++ ++ +L N+ F
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 260
Query: 283 SNIDSVAFKSLFSLKLVKIN 302
+N S F ++ K
Sbjct: 261 TNEVSFIFYQPVTIGKAKAR 280
Score = 80.5 bits (199), Expect = 6e-17
Identities = 68/313 (21%), Positives = 117/313 (37%), Gaps = 47/313 (15%)
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
I + D E +L ++ + ++ +I + ++I +
Sbjct: 12 TPIKQIFSD--DAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG---I 64
Query: 168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL 227
L ++ L L+ N++ D+ L+NL + L +L+L+EN ++ + S L L +L
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKP--LANLKN--LGWLFLDENKVKDL---SSLKDLKKLKSL 117
Query: 228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS 287
+L N IS I + V L L SL L NN ++ I LS+L+ L L L N S+I
Sbjct: 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173
Query: 288 VA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
+A L +L L K N I +L + L L L L+L
Sbjct: 174 LAGLTKLQNLYLSK-NHISDLRA-----------------------LAGLKNLD--VLEL 207
Query: 347 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
N +L VK N +L + + + + + V + S
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVK-NTDGSLVTPEIISDDGDYEKPNVKWH-LPEFTNEVS 265
Query: 407 KLFQGNTNLKSVS 419
+F +
Sbjct: 266 FIFYQPVTIGKAK 278
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 100 bits (250), Expect = 1e-22
Identities = 75/395 (18%), Positives = 119/395 (30%), Gaps = 65/395 (16%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
+ + + L SLD + I + E L L + N I+ L
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL 79
Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
L L NK++ ++ T L L N +T + S L
Sbjct: 80 D---LSQNTNLTYLACDSNKLTNLDVTPLT---KLTYLNCDTNKLTKLD----VSQNPLL 129
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
L N + ++ + + L L + N T LD + T L TL S N
Sbjct: 130 TYLNCARNTLTEIDVSHNTQL-----TELDCHLNKKITKLDVT---PQTQLTTLDCSFNK 181
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
I+ ++ S + L+ L+ NN++ + L++ L LD S N + ID L
Sbjct: 182 ITELDVSQ---NKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDVTPLTQL 235
Query: 294 FSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSN 353
L L LS K L +
Sbjct: 236 TYFDCSVNPLT------------ELDVSTLS---------------KLTTLHCIQTDLLE 268
Query: 354 IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNT 413
ID L + I LD N QL + + +L N
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELD------VTHNTQLYLLDCQAA-GITELD---LSQNP 318
Query: 414 NLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
L + L L+ L+ SH ++ L + +
Sbjct: 319 KLVYLYLNNTELTELDVSHNT--KLKSLSCVNAHI 351
Score = 97.1 bits (242), Expect = 1e-21
Identities = 67/420 (15%), Positives = 136/420 (32%), Gaps = 66/420 (15%)
Query: 29 FDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV 88
F ++ A+ + + + + ++ + I+++ + L L + N I
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78
Query: 89 LGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL 148
L + L L N+++ L L +L L+ NK++ ++ + L
Sbjct: 79 L---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPL---L 129
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
L + N +T + S L L N+ + + ++ L L + N
Sbjct: 130 TYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD--VTPQT--QLTTLDCSFNK 181
Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
I LD S L+ L +N I+ ++ + + L L D S+N L+ I ++
Sbjct: 182 ITE-LDVS---QNKLLNRLNCDTNNITKLDLNQNIQLTFL---DCSSNKLTEID---VTP 231
Query: 269 LSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIP 328
L+ L D S N + +D L +L + +D +
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHC-IQTDLLEIDLTHNTQLIYFQAEGCRKIKE 290
Query: 329 LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNI 388
L + + LD + +D N
Sbjct: 291 LDVTHNT----QLYLLDCQAAGITELD----------------------------LSQNP 318
Query: 389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+L + +N L +L NT LKS+S + + + ++ ++
Sbjct: 319 KLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNAHIQDFSSVGK-IPALNNNFEAEGQT 373
Score = 92.4 bits (230), Expect = 4e-20
Identities = 62/324 (19%), Positives = 111/324 (34%), Gaps = 31/324 (9%)
Query: 36 SCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE 95
+C L + + NP + + N ++ + +S +L LD +NK + +
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKK--ITKLDVT 167
Query: 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155
Q +L L+ S+N+I+ L K L L+ N I+ ++ + L L S
Sbjct: 168 PQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSS 221
Query: 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN 215
N +T + + L L N + ++ + LS L L+ + + +D
Sbjct: 222 NKLTEID----VTPLTQLTYFDCSVNPLTELDVSTLSKLT-----TLHCIQTDLLE-IDL 271
Query: 216 SFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNL 275
+ T L I E L+ LD ++ + LS+ LV L
Sbjct: 272 TH---NTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYL 323
Query: 276 DLSGNNFSNIDSVAFKSLFSLKLV--KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSL 333
L+ + +D L SL V I ++ I + +
Sbjct: 324 YLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTN 383
Query: 334 TPL-GTLKCDRLDLSGNNFSNIDS 356
L + D LD GN +
Sbjct: 384 NSLTIAVSPDLLDQFGNPMNIEPG 407
Score = 85.9 bits (213), Expect = 5e-18
Identities = 70/351 (19%), Positives = 110/351 (31%), Gaps = 49/351 (13%)
Query: 46 PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
I+ + +I N I+ + LS L L NK+ L + KL LN
Sbjct: 59 GIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC 113
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
N+++ L L L+ + N ++ I+ L L N
Sbjct: 114 DTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKI---TKL 164
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
+ L L N+I ++ +S L+ L + N I T LD + L
Sbjct: 165 DVTPQTQLTTLDCSFNKITELD---VSQNK--LLNRLNCDTNNI-TKLDLN---QNIQLT 215
Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
L SSN ++ I+ + L L D S N L+ + +S LS L L + I
Sbjct: 216 FLDCSSNKLTEIDVTP---LTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI 269
Query: 286 DSVAFKSLFSLKLVKINLIPNLDSIDQP--------------LSLSLPPLLLSLSIP--- 328
D L + I LD L LS P L+ L +
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329
Query: 329 -LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
++ LK L + + SV + +
Sbjct: 330 LTELDVSHNTKLK--SLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPK 378
Score = 81.3 bits (201), Expect = 2e-16
Identities = 44/325 (13%), Positives = 106/325 (32%), Gaps = 28/325 (8%)
Query: 42 LEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLL 101
+ + + ++ T+ N+I+ + +S L L+ N I L + +L
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL---DLNQNIQLT 215
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
L+ S N+++ + L +L D S N ++ ++ + L L ++
Sbjct: 216 FLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLLEI 269
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
+ + L + + + + + +++ L+ L I LD S
Sbjct: 270 D----LTHNTQLIYFQAEGCRKIKELD--VTHNT--QLYLLDCQAAGITE-LDLSQ---N 317
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
L L L++ ++ ++ S L SL N ++ + + K+ AL N +
Sbjct: 318 PKLVYLYLNNTELTELDVSH---NTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQ 372
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
+ + V +L+ + + + +L+
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLK 366
+ F++ +K
Sbjct: 433 YTFTSENGAIVGTVTTPFEAPQPIK 457
Score = 59.3 bits (144), Expect = 2e-09
Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 20/230 (8%)
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
F N + ++ + + S L TL SLD N++++ + + KL+ L L +
Sbjct: 15 FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICT 72
Query: 279 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338
NN + +D +L L N + NLD + L+ L+ L
Sbjct: 73 SNNITTLDLSQNTNLTYLACDS-NKLTNLD-VTPLTKLT----YLNCDTNKLTKLDVSQN 126
Query: 339 LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINEN 398
L+ + N + ID L L I LD QL T+ + N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFN 180
Query: 399 MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+ +L N L ++ N+++ L+ + +++FLD S N L
Sbjct: 181 -KITELD---VSQNKLLNRLNCDTNNITKLDLNQNI--QLTFLDCSSNKL 224
Score = 57.8 bits (140), Expect = 5e-09
Identities = 27/207 (13%), Positives = 65/207 (31%), Gaps = 18/207 (8%)
Query: 36 SCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE 95
C+ L + + ++ T+ + + + + + + +
Sbjct: 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLL----EIDLTHNTQLIYFQAEGCRKIKELDVT 294
Query: 96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155
+ +L L+ I+ L +L L L+ +++ ++ L+ L
Sbjct: 295 HNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVN 348
Query: 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN 215
+I F + +L Q + +P L+N SL + L N
Sbjct: 349 AHIQDFSS---VGKIPALNNNFEAEGQTITMPKETLTNN---SLTIAVSPDLL--DQFGN 400
Query: 216 SFPFTLTNLHTLALSSNIISFINESSF 242
+ ++N I++ N S+
Sbjct: 401 PMNIEPGDGGVYDQATNTITWENLSTD 427
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 96.9 bits (242), Expect = 5e-21
Identities = 94/396 (23%), Positives = 145/396 (36%), Gaps = 62/396 (15%)
Query: 76 LRSLDLSVNKINVLG---SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
+ S+DLS +NV S + L +L +S + I+ S FK L +LDLS N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRN 110
Query: 133 KIS--VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI---LDVP 187
+S V T+ L+ L +S N + + L SL +L L N I V
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-LTNLHTLALSSNIIS-FINESSFVTL 245
+ L +L ++ N + + NL L +SSN S I
Sbjct: 171 WVLSDGCG--ELKHLAISGNK----ISGDVDVSRCVNLEFLDVSSNNFSTGI--PFLGDC 222
Query: 246 RTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLSGNNFS-NIDSVAFKSLFSLKLVKINL 303
L LD+S N LS + +S + L L++S N F I + KSL L L +
Sbjct: 223 SALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281
Query: 304 ---IPNLDSIDQPLSLSLPPLLLS---LSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357
IP D + +L L LS + L+ L LS NNFS +
Sbjct: 282 TGEIP--DFLSGACD-TLTGLDLSGNHFYGAVPPFFGSCSLLE--SLALSSNNFS--GEL 334
Query: 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK-QLPSKLFQGNTNLK 416
+L ++ L+ + ++ N +LP L + +L
Sbjct: 335 PMDTLLKMR----------------------GLKVLDLSFN-EFSGELPESLTNLSASLL 371
Query: 417 SVSLKGNSLS---HLEASHFPLERISFLDLSDNPLH 449
++ L N+ S P + L L +N
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Score = 88.0 bits (219), Expect = 3e-18
Identities = 77/330 (23%), Positives = 124/330 (37%), Gaps = 43/330 (13%)
Query: 76 LRSLDLSVNKIN-VLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYNK 133
L SL LS N + L L L++S+NE S L + L TLDLS N
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 134 IS-VINKTAFRDTL-HLELLILSFNNITYFEDSEI---FSSLKSLRILKLDNN------- 181
S I ++ L+ L L N T +I S+ L L L N
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFT----GKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 182 ---------QILDVPNNVLS-NLPH-----QSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
+ L + N+L +P ++L L L+ N + + + TNL+
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNW 494
Query: 227 LALSSNIISFINESSFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLSGNNFS-N 284
++LS+N ++ L L L LSNN+ S IP +L +L+ LDL+ N F+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGT 553
Query: 285 IDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCD 342
I + FK + I + + LL + L L T
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN-- 611
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINL 372
+++ + S F + S ++ +++
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGS--MMFLDM 639
Score = 72.2 bits (178), Expect = 2e-13
Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 37/261 (14%)
Query: 51 PEVQTIILRENRIS-NVHYTLSFYIELRSLDLSVNKINVLGS--HNFEYQNKLLNLNISY 107
+Q + L+ N + + TLS EL SL LS N ++ G+ + +KL +L +
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWL 451
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI- 166
N + +K L+TL L +N ++ + + +L + LS N +T EI
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT----GEIP 507
Query: 167 --FSSLKSLRILKLDNN----------------QILDVPNNVLS-NLPHQSLHYLYLNEN 207
L++L ILKL NN LD+ N+ + +P +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA---MFKQSGK 564
Query: 208 LIETVLDNSFPFTLTN---LHTLALSSNIISFINE--SSFVTLRTLHSLDLSNNNLSAIP 262
+ + + N + N++ F L T + ++++
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 263 TKQLSKLSALVNLDLSGNNFS 283
+ +++ LD+S N S
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLS 645
Score = 47.6 bits (114), Expect = 9e-06
Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 43/228 (18%)
Query: 246 RTLHSLDLSNNNLSAIP---TKQLSKLSALVNLDLSGNNFS-NIDSVA-FKSLFSLKLVK 300
+ S+DLS+ L+ + L L+ L +L LS ++ + ++ SL SL L +
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 301 INL---IPNLDSID-----QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS 352
+L + L S+ + L++S L + L L LDLS N+ S
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-----LDLSANSIS 164
Query: 353 NIDSVAFKSLFSL-KLVKINL--------IP--NLDSIDQRAFVDNIQLETVIINENMNL 401
+ V + +L + + + + LE + ++ N
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN-----------LEFLDVSSNNFS 213
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLS-HLEASHFPLERISFLDLSDNPL 448
+P + L+ + + GN LS + + L++S N
Sbjct: 214 TGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 91.6 bits (228), Expect = 8e-21
Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ N+ ++ L + K L ++ + + I + + +L+ L LS N I
Sbjct: 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI 75
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
+ D L L L ++ N++ + L+ +P L L+L+ N +
Sbjct: 76 S---DLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELRDTDSLI-- 125
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
L NL L++ +N + I L L LDL N ++ L++L + +DL+
Sbjct: 126 -HLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180
Query: 279 GNNFSNIDSVAFKSLFSLKLVKIN 302
G N L+ VK
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDP 204
Score = 90.9 bits (226), Expect = 1e-20
Identities = 47/249 (18%), Positives = 96/249 (38%), Gaps = 20/249 (8%)
Query: 43 EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
+V P L + ++++ + +++ + + I L ++ L
Sbjct: 11 QVFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKE 67
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
L++S+N+IS LS K L +L+ L ++ N++ +N L L L N +
Sbjct: 68 LHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNNELR--- 119
Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
D++ LK+L IL + NN++ + L L L L L+ N I + L
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVM--LGFLS--KLEVLDLHGNEIT---NTGGLTRLK 172
Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
++ + L+ L +++ + I +S + V+ +
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELP 230
Query: 283 SNIDSVAFK 291
D V++K
Sbjct: 231 VYTDEVSYK 239
Score = 57.3 bits (139), Expect = 3e-09
Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 18/192 (9%)
Query: 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFI 237
I V L + L + + ++ L+ + ++ I +
Sbjct: 4 QRPTPINQVFP--DPGLAN--AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQSL 56
Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
+ L L LS+N +S + L L+ L L ++ N N++ + L L
Sbjct: 57 --AGMQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112
Query: 298 LVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DRLDLSGNNFSNIDS 356
L N + + DS+ +L +LS+ S+ LG L + LDL GN +N
Sbjct: 113 LDN-NELRDTDSLIHLKNLE----ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG 167
Query: 357 VA-FKSLFSLKL 367
+ K + + L
Sbjct: 168 LTRLKKVNWIDL 179
Score = 36.5 bits (85), Expect = 0.014
Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 61/220 (27%)
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLKLVKINL 303
L +L +++ + + +LS + N + +N ++ + F +L L L N
Sbjct: 18 LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH-NQ 74
Query: 304 IPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLF 363
I +L + L + L ++ N N++ + L
Sbjct: 75 ISDLSPLKDLTKL-------------------------EELSVNRNRLKNLNGIPSACLS 109
Query: 364 SLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN 423
L L N + + DS+ NL+ +S++ N
Sbjct: 110 RLFLDN-NELRDTDSLI------------------------------HLKNLEILSIRNN 138
Query: 424 SLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQL 463
L + F L ++ LDL N + L L + +
Sbjct: 139 KLKSIVMLGF-LSKLEVLDLHGNEITNTGGLTRLKKVNWI 177
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 88.9 bits (221), Expect = 6e-19
Identities = 68/414 (16%), Positives = 153/414 (36%), Gaps = 66/414 (15%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
P +++++ N ++ + L + ++ ++ L L L +S N++
Sbjct: 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL 143
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
L + LK +D+ N + + LE + N + + +L
Sbjct: 144 EKL--PELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE---LQNL 194
Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
L + DNN + +P+ SL + N++E + + L L T+
Sbjct: 195 PFLTAIYADNNSLKKLPDLP------LSLESIVAGNNILEELPELQ---NLPFLTTIYAD 245
Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
+N++ + + +L +L++ +N L+ +P +L LD+S N FS + +
Sbjct: 246 NNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSEL-P 296
Query: 291 KSLFSLKL--VKINLIPNLDSIDQPLSLS------LPPLLLSLSIPLAFSLTPLGTL--- 339
+L+ L +I + +L + L++S LP L L L S L +
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER-LIASFNHLAEVPEL 355
Query: 340 --KCDRLDLSGNNFSNIDSVAFKSLFSLKL-VKINLIPNLDSIDQRAFVDNIQLETVIIN 396
+L + N + +S+ L++ + +P L L+ + +
Sbjct: 356 PQNLKQLHVEYNPLREFPDI-PESVEDLRMNSHLAEVPELPQ----------NLKQLHVE 404
Query: 397 ENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL-EASHFPLERISFLDLSDNPLH 449
N L++ P +++ + + + E +H +++ + H
Sbjct: 405 TN-PLREFPDIP----ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 82.0 bits (203), Expect = 1e-16
Identities = 65/396 (16%), Positives = 132/396 (33%), Gaps = 85/396 (21%)
Query: 48 QLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
L P ++ + + N++ + L L+ +D+ N + L + L +
Sbjct: 128 DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGN 182
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
N++ L + L L + N + + L LE ++ N + +
Sbjct: 183 NQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE---L 233
Query: 168 SSLKSLRILKLDNNQI------------LDVPNNVLSNLPH--QSLHYLYLNENLIETVL 213
+L L + DNN + L+V +N L++LP QSL +L ++EN+
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF---- 289
Query: 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALV 273
+ NL+ L SSN I + + +L L++SNN L +P + L
Sbjct: 290 -SGLSELPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP----ALPPRLE 340
Query: 274 NLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAF 331
L S N+ + + +LK + + N + +P + L +
Sbjct: 341 RLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD--------IPESVEDLRMNSHL 388
Query: 332 SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE 391
+ P +L + N S++ +++N
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFP----DIPESVEDLRMN-------------------- 424
Query: 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
+ + + L+ + + H
Sbjct: 425 ------SERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 80.8 bits (200), Expect = 2e-16
Identities = 75/417 (17%), Positives = 147/417 (35%), Gaps = 75/417 (17%)
Query: 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE 109
N +Q + + ++ + + ++ Q ++ +
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 110 ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSS 169
++ L+L+ +S + + HLE L+ S N++T + S
Sbjct: 70 -----------DRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPEL--PQS 112
Query: 170 LKSLRILKLDNNQI---------LDVPNNVLSNLPH----QSLHYLYLNENLIETVLDNS 216
LKSL + + + L V NN L LP L + ++ N ++
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-----K 167
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
P +L +A +N + + E L L ++ NN+L +P +L ++
Sbjct: 168 LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLP----DLPLSLESIV 221
Query: 277 LSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNL-DSIDQPLSLSLPPLLLSLSIPLAFSL 333
N + ++L L + NL+ L D +L++ L+ L SL
Sbjct: 222 AGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSL 279
Query: 334 TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLE 391
T LD+S N FS + + +L+ L +I + +L LE
Sbjct: 280 T--------FLDVSENIFSGLSEL-PPNLYYLNASSNEIRSLCDLPP----------SLE 320
Query: 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
+ ++ N L +LP+ L+ + N L+ + + + L + NPL
Sbjct: 321 ELNVSNN-KLIELPALP----PRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPL 369
Score = 46.9 bits (112), Expect = 1e-05
Identities = 52/285 (18%), Positives = 101/285 (35%), Gaps = 47/285 (16%)
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
S L+ ++ + ++P N+ +S Y + E +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVE-AENV--KSKTEYYNAWSEWERNAPPGN-GEQREMAVSR 64
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
L + R H L+L+N LS++P L +L S N+ + +
Sbjct: 65 LRDCL-----------DRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPE- 108
Query: 289 AFKSLFSLKL--VKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
+SL SL + + + +L + + L +S L +P L LK +D+
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL---EKLP---ELQNSSFLK--IIDV 160
Query: 347 SGNNFSNIDSVAFKSLFSLKLV--KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQL 404
N+ + SL + ++ +P L ++ L + + N +LK+L
Sbjct: 161 DNNSLKKLPD-LPPSLEFIAAGNNQLEELPELQNL--------PFLTAIYADNN-SLKKL 210
Query: 405 PSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
P +L+S+ N L L L ++ + +N L
Sbjct: 211 PDLP----LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250
Score = 39.2 bits (92), Expect = 0.004
Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 43/220 (19%)
Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
FIN + + L ++NL+ +P + + + + + +
Sbjct: 2 FINPRNV-SNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59
Query: 296 LKLVKI--NLIPNLDSID---QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN 350
+ + ++ L ++ LS SLP L L L S N+
Sbjct: 60 MAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLE----------------SLVASCNS 102
Query: 351 FSNIDSVAFKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKL 408
+ + +SL SL + + + +L LE + ++ N L++LP
Sbjct: 103 LTELPE-LPQSLKSLLVDNNNLKALSDLPP----------LLEYLGVSNN-QLEKLPE-- 148
Query: 409 FQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
Q ++ LK + + NSL L + F+ +N L
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL 185
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 85.5 bits (212), Expect = 7e-19
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 29/213 (13%)
Query: 22 CPSR--CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
C + C C + K E C L+ VP + + + L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTE-----------------------KL 40
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
DL + L F KL LN+ YN++ LS F L EL TL L+ N+++ +
Sbjct: 41 DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
F L+ L L N + +F L L+ L+L+ NQ+ +P L +L
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSIPAGAFDKL--TNL 157
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
L L+ N +++V +F L L T+ L N
Sbjct: 158 QTLSLSTNQLQSVPHGAFD-RLGKLQTITLFGN 189
Score = 85.1 bits (211), Expect = 1e-18
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ LDL ++ ++ FR L L L +N + + +F L L L L NNQ+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLA 96
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
+P V +L L LYL N ++++ F LT L L L++N + I +F
Sbjct: 97 SLPLGVFDHL--TQLDKLYLGGNQLKSLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
L L +L LS N L ++P +L L + L GN F
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 79.7 bits (197), Expect = 6e-17
Identities = 45/149 (30%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
E L L + D+ F L L L LD NQ+ + V +L L L L N
Sbjct: 38 EKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLGLANNQ 94
Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
+ ++ F LT L L L N + + F L L L L+ N L +IP K
Sbjct: 95 LASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 269 LSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
L+ L L LS N ++ AF L L+
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Score = 50.5 bits (121), Expect = 5e-07
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
++LDL + + F+ L L + NL N L ++ F D +L T+ + N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWL--NLDYNQLQTLSAGVFDDLTELGTLGLANN-Q 94
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC 450
L LP +F T L + L GN L L + F L ++ L L+ N L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Score = 49.3 bits (118), Expect = 1e-06
Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 75/242 (30%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
+ L L S ++ +++++F L L L+L N L + L+ L L L+ N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
+ SLP + LT L
Sbjct: 95 LA---------------------------------SLPLGVFD-------HLTQL----- 109
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
D+L L GN ++ S F L +L+ + +N N L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRL-------------------------TKLKELRLNTN-QL 143
Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWL-- 457
+ +P+ F TNL+++SL N L + F L ++ + L N C +L+L
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203
Query: 458 WI 459
WI
Sbjct: 204 WI 205
Score = 32.7 bits (75), Expect = 0.29
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 387 NIQLETVIINENMN-LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLS 444
I +T ++ L L F+G T L ++L N L L A F L + L L+
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 445 DNPL 448
+N L
Sbjct: 92 NNQL 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 81.2 bits (201), Expect = 7e-18
Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 16/188 (8%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
LN + + + + T + L + L+ ++ + T +++ L ++ +
Sbjct: 24 AYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA 78
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
T + S L +L L++ + LS L SL L ++ + + +
Sbjct: 79 T---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKIN 133
Query: 219 FTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
TL ++++ LS N I+ I TL L SL++ + + + + L L
Sbjct: 134 -TLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYA 188
Query: 278 SGNNFSNI 285
Sbjct: 189 FSQTIGGK 196
Score = 73.1 bits (180), Expect = 5e-15
Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 11/164 (6%)
Query: 98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNN 157
N L + ++ ++ L+ + +K L ++ + +LE L + +
Sbjct: 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99
Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217
+T + + S L SL +L + ++ D ++ LP ++ + L+ N T +
Sbjct: 100 VTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLP--KVNSIDLSYNGAITDIMPL- 155
Query: 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
TL L +L + + + L+ L + +
Sbjct: 156 -KTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196
Score = 71.1 bits (175), Expect = 2e-14
Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 13/181 (7%)
Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
K L + + I + L + L+ N+T D +++ L +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVT---DLTGIEYAHNIKDLTI 73
Query: 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN 238
+N + +S L +L L + + + + LT+L L +S +
Sbjct: 74 NNIHATNYNP--ISGLS--NLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSI 128
Query: 239 ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLK 297
+ TL ++S+DLS N L L L +L++ + + + F L L
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY 187
Query: 298 L 298
Sbjct: 188 A 188
Score = 71.1 bits (175), Expect = 2e-14
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 9/157 (5%)
Query: 53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112
+ I L ++++ + + ++ L ++ + L L I ++++
Sbjct: 46 LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTS 102
Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
GL L LD+S++ T + + LS+N D +L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPE 160
Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI 209
L+ L + + + D + + P L+ LY I
Sbjct: 161 LKSLNIQFDGVHDYRG--IEDFP--KLNQLYAFSQTI 193
Score = 61.1 bits (149), Expect = 5e-11
Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191
I + F+ L+ L S NIT + + SL + L N + D+ +
Sbjct: 12 QDNVNIPDSTFKAYLNGLLGQSSTANIT-------EAQMNSLTYITLANINVTDLTG--I 62
Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
++ L +N + L+NL L + ++ + L +L L
Sbjct: 63 EYAH--NIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
D+S++ +++ L + ++DLS N
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Score = 39.2 bits (92), Expect = 0.001
Identities = 25/224 (11%), Positives = 72/224 (32%), Gaps = 30/224 (13%)
Query: 206 ENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ 265
E ++ + S + + +L + L+N N++ +
Sbjct: 4 EQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TG 61
Query: 266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSL 325
+ + +L ++ + +N + L +L+ ++ ++ +
Sbjct: 62 IEYAHNIKDLTINNIHATNYN--PISGLSNLE--RLRIMGK-----------------DV 100
Query: 326 SIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385
+ +L+ L +L LD+S + + +L K+ I+L N D
Sbjct: 101 TSDKIPNLSGLTSLT--LLDISHSAHDDSILTKINTL--PKVNSIDLSYNGAITDIMPLK 156
Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLE 429
+L+++ I + + + L + ++ +
Sbjct: 157 TLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 84.6 bits (209), Expect = 2e-17
Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 46/262 (17%)
Query: 78 SLDLSVNKINVLGSHNFEYQNKLLNLNISY---NEISALSKDTFKGLKELKTLDLSYNKI 134
S + N I+ + F +K + NE +L K+ + + L L+ +
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71
Query: 135 SVINKTAFRDTLHLELLILSFNNITYFEDS---------------EIFSSLKSLRILKLD 179
S + + +L ++ N + + + SL+ L +D
Sbjct: 72 SSLPDNLPP---QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVD 128
Query: 180 NNQI------------LDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPFTLTNLH 225
NNQ+ ++ NN L+ LP SL L + N + P +L
Sbjct: 129 NNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQL-----TFLPELPESLE 183
Query: 226 TLALSSNIISFINESSFVTLR---TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
L +S+N++ + T N ++ IP + + L + L N
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPL 242
Query: 283 SNIDSVAFKSLFSLKLVKINLI 304
S+ + + I
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRI 264
Score = 83.9 bits (207), Expect = 4e-17
Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 39/228 (17%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L L+ ++ L + ++ L I+ N + +L + L+ LD N++
Sbjct: 61 FSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLPEL----PASLEYLDACDNRL- 112
Query: 136 VINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI----------- 183
+ + L+ L + N +T + L + DNNQ+
Sbjct: 113 ----STLPELPASLKHLDVDNNQLTMLPEL-----PALLEYINADNNQLTMLPELPTSLE 163
Query: 184 -LDVPNNVLSNLPHQ--SLHYLYLNENLIETVLDNSFPFTLTNLHT----LALSSNIISF 236
L V NN L+ LP SL L ++ NL+E++ + P + N I+
Sbjct: 164 VLSVRNNQLTFLPELPESLEALDVSTNLLESL--PAVPVRNHHSEETEIFFRCRENRITH 221
Query: 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284
I E+ ++L ++ L +N LS+ + LS+ +A + FS
Sbjct: 222 IPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268
Score = 70.4 bits (172), Expect = 7e-13
Identities = 53/375 (14%), Positives = 100/375 (26%), Gaps = 104/375 (27%)
Query: 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY----NKISVINKTAFRDTLHLELLI 152
N L+ N YN IS D F + + L +S++ + L
Sbjct: 9 NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQ 65
Query: 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
L+ N++ D + + L + N ++ +P SL YL +N +
Sbjct: 66 LNRLNLSSLPD-NLPPQITVLE---ITQNALISLPELP------ASLEYLDACDNRLS-- 113
Query: 213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272
+ P +L L + +N ++ + E L ++ NN L+ +P ++L
Sbjct: 114 ---TLPELPASLKHLDVDNNQLTMLPEL----PALLEYINADNNQLTMLP----ELPTSL 162
Query: 273 VNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFS 332
L + N + LP L SL
Sbjct: 163 EVLSVRNNQLT---------------------------------FLPELPESLE------ 183
Query: 333 LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLET 392
LD+S N ++ +V + + +I +N
Sbjct: 184 ----------ALDVSTNLLESLPAVPVR-NHHSEETEIFF--RCR--------EN----- 217
Query: 393 VIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCD 451
+ +P + ++ L+ N LS
Sbjct: 218 -------RITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269
Query: 452 CNLLWLWILVQLQVK 466
Sbjct: 270 DGQQNTLHRPLADAV 284
Score = 56.5 bits (136), Expect = 2e-08
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 13/160 (8%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L ++ N++ +L E L L++ N+++ L + + L+ LD+S N +
Sbjct: 142 LEYINADNNQLTML----PELPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLE 193
Query: 136 VINKTAFRDTLHLELLI---LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
+ R+ E I N IT+ ++ SL + L++N + LS
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDNPLSSRIRESLS 251
Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
Q ++ + N+ L + T N
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 80.3 bits (198), Expect = 1e-16
Identities = 47/240 (19%), Positives = 74/240 (30%), Gaps = 39/240 (16%)
Query: 58 LRENRISNVHYTLSFYIE--------LRSLDLSVNKINVLGSHNFEYQNKLL----NLNI 105
L+E + N+ T + L L+L + E Q L L+I
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156
Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
+ S + + L TLDLS N +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPEL---------------------GERGLISAL 195
Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPH-QSLHYLYLNENLIETVLDNSFPFTLTNL 224
+L++L L N + + L L L+ N + + L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255
Query: 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284
++L LS + + + L LDLS N L P +L + NL L GN F +
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSV---LDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLD 310
Score = 75.7 bits (186), Expect = 4e-15
Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 14/242 (5%)
Query: 69 TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
S L+ +D + +L G+ L+ L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL-----KSLRILKLDNNQI 183
L +++ + +L IL+ N+++ + L L++L +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 184 LDVPNNVLSNLPHQSLHYLYLNENLI---ETVLDNSFPFTLTNLHTLALSSN---IISFI 237
L+ + P +L L L++N ++ P L LAL + S +
Sbjct: 162 LNFSCEQVRVFP--ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLSGNNFSNIDSVAFKSLFSL 296
+ L LDLS+N+L S L +L+LS + L L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL 279
Query: 297 KL 298
L
Sbjct: 280 DL 281
Score = 64.5 bits (157), Expect = 2e-11
Identities = 56/310 (18%), Positives = 92/310 (29%), Gaps = 49/310 (15%)
Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD-VPNNVLSNLPHQSLHYLY 203
LE L+ + SL+ L + +I + L L L L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 204 LNEN-LIETVLDNSFPFTLTNLHTLALSSNII----SFINESSFVTLRTLHSLDLSNNNL 258
L + T T +L+ L L + +++ E L L ++ +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
+Q+ AL LDLS N + L P Q L+L
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLIS-----------ALCPLKFPTLQVLALRN 210
Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
+ + S + L+ LDLS N+ +
Sbjct: 211 A-GMETPSGVCSALAAARVQLQ--GLDLSHNSLRDA------------------------ 243
Query: 379 IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI 438
+ QL ++ ++ LKQ+P L L + L N L + L ++
Sbjct: 244 AGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE-LPQV 298
Query: 439 SFLDLSDNPL 448
L L NP
Sbjct: 299 GNLSLKGNPF 308
Score = 63.8 bits (155), Expect = 4e-11
Identities = 47/272 (17%), Positives = 78/272 (28%), Gaps = 31/272 (11%)
Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTA-FRDTLHLELLILSFNNIT--YFEDS 164
N + A + + G + L+ L + + + + +L L+ L + I +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 165 EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV---LDNSFPFTL 221
+ L+ L L+N ++ L L+ L L T L +
Sbjct: 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA----IPTKQLSKLSALVNLDL 277
L L+++ + L +LDLS+N I K L L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 278 SGNNFSNIDSVAFKSLFSLK-LVKINLIPN-LDSIDQPLSLSLPPLLLSLSIPLAFSLTP 335
V + L ++L N L S P L S
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS----------- 257
Query: 336 LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKL 367
L+LS + L L L
Sbjct: 258 --------LNLSFTGLKQVPKGLPAKLSVLDL 281
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 74.0 bits (183), Expect = 1e-15
Identities = 20/165 (12%), Positives = 47/165 (28%), Gaps = 10/165 (6%)
Query: 121 LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
L E L Y +++ + K A + L + +T + + L L+
Sbjct: 3 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIY 59
Query: 181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240
++ + + LP L + L + L L ++ +
Sbjct: 60 QELTRLKAA-VGELP--EKSKLQEIYQELTR-LKAAV-GELPEKSKLQEIYQELTELKA- 113
Query: 241 SFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
+ L L L+ + + +L +++
Sbjct: 114 AVGELPEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDL 157
Score = 72.5 bits (179), Expect = 4e-15
Identities = 21/167 (12%), Positives = 45/167 (26%), Gaps = 16/167 (9%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ L Y E++ L K L E L Y +++ + K A + L + +
Sbjct: 5 EKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQEL 62
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
T + + L L+ ++ + + L L +
Sbjct: 63 TRLKAA--VGELPEKSKLQEIYQELTRLKAA-VGEL--PEKSKLQEIYQELT-----ELK 112
Query: 219 FT---LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP 262
L L ++ + + L L+ +
Sbjct: 113 AAVGELPEKSKLQEIYQELTQLKAA-VGELPDQSKQQQIYQELTDLK 158
Score = 60.6 bits (148), Expect = 6e-11
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 13/168 (7%)
Query: 58 LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
++ + + E L ++ L + L Y E++ L K
Sbjct: 11 EIYQELTRLKAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRL-KAA 68
Query: 118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177
L E L Y +++ + K A + L + +T + + L L+
Sbjct: 69 VGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELKAA--VGELPEKSKLQ 125
Query: 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
++ + + LP + + L
Sbjct: 126 EIYQELTQLKAA-VGELP--DQSKQQQIYQELTDL-----KTAFERLG 165
Score = 44.4 bits (106), Expect = 2e-05
Identities = 24/206 (11%), Positives = 49/206 (23%), Gaps = 54/206 (26%)
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
L L L+ + + +L L + + + A L
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKA-AVGELPEKS------- 53
Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
L I Q L+ L + L + +L + + + ++
Sbjct: 54 -KLQEIYQELT-RLKAAVGELP-----EKS--------KLQEIYQELTRLKA----AVGE 94
Query: 365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN-TNLKSVSLKGN 423
L + + L +L + + G +
Sbjct: 95 LP----------------------EKSKLQEIYQ-ELTELKAAV--GELPEKSKLQEIYQ 129
Query: 424 SLSHLEASHFPLERISFLDLSDNPLH 449
L+ L+A+ L S L
Sbjct: 130 ELTQLKAAVGELPDQSKQQQIYQELT 155
Score = 37.8 bits (89), Expect = 0.003
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
+ ++ + + E L ++ L + L Y E++ L
Sbjct: 76 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIYQELTQL 134
Query: 114 SKDTFKGLKELKTLDLSYNKISVI 137
K L + Y +++ +
Sbjct: 135 -KAAVGELPDQSKQQQIYQELTDL 157
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 70.5 bits (173), Expect = 2e-14
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
+ R LDL KI V+ + ++ ++ S NEI L D F L+ LKTL ++ N+
Sbjct: 19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 75
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NV 190
I I + + L LIL+ N++ D + +SLKSL L + N + + + V
Sbjct: 76 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 135
Query: 191 LSNLPHQSLHYL 202
+ +P + L
Sbjct: 136 IYKVP--QVRVL 145
Score = 64.3 bits (157), Expect = 3e-12
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVI-NKTAFRDTLHLELLILSFNNITYF 161
+ ++ I ++ + + LDL KI VI N A D + + S N I
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLD--QFDAIDFSDNEIRKL 57
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
+ F L+ L+ L ++NN+I + + LP L L L N + + D +L
Sbjct: 58 DG---FPLLRRLKTLLVNNNRICRIGEGLDQALP--DLTELILTNNSLVELGDLDPLASL 112
Query: 222 TNLHTLALSSNIIS 235
+L L + N ++
Sbjct: 113 KSLTYLCILRNPVT 126
Score = 59.3 bits (144), Expect = 2e-10
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 25/154 (16%)
Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234
++KL I +N L L I + + TL + S N I
Sbjct: 1 MVKLTAELIEQAAQ--YTNAV--RDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEI 54
Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV----AF 290
+ F LR L +L ++NN + I L L L L+ N+ + + +
Sbjct: 55 RKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112
Query: 291 KSLFSLKLVK-------------INLIPNLDSID 311
KSL L +++ I +P + +D
Sbjct: 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
+ I +N I + L++L ++ N+I +G + L L ++ N +
Sbjct: 42 DQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
Query: 111 SALSK-DTFKGLKELKTLDLSYNKIS 135
L D LK L L + N ++
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVT 126
Score = 31.6 bits (72), Expect = 0.43
Identities = 27/182 (14%), Positives = 49/182 (26%), Gaps = 57/182 (31%)
Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310
+ L+ + Q + LDL G I+ NL LD
Sbjct: 2 VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE---------------NLGATLDQF 44
Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DRLDLSGNNFSNIDSVAFKSLFSLKLVK 369
D + S L L+ L ++ N I ++L L +
Sbjct: 45 DA----------IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94
Query: 370 I--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
+ N + L +D L L +L + + N +++
Sbjct: 95 LTNNSLVELGDLD-------------------PLASLK--------SLTYLCILRNPVTN 127
Query: 428 LE 429
+
Sbjct: 128 KK 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 70.9 bits (174), Expect = 3e-14
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 5/140 (3%)
Query: 49 LNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN 108
E + I + TLS + L LS N I + + L L++ N
Sbjct: 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN 80
Query: 109 EISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS 168
I + + L+ L +SYN+I+ ++ ++L +L +S N IT + + + +
Sbjct: 81 LIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLA 137
Query: 169 SLKSLRILKLDNNQILDVPN 188
+L L L L N + +
Sbjct: 138 ALDKLEDLLLAGNPLYNDYK 157
Score = 55.8 bits (135), Expect = 4e-09
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 156 NNITYFEDSEIFSSLKSLRI-LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV-- 212
+ I FE+ + + ++ ++ L I + LS L +L L+ N IE +
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKA--CKHLALSTNNIEKISS 65
Query: 213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272
L + NL L+L N+I I V TL L +S N ++++ + KL L
Sbjct: 66 LSG-----MENLRILSLGRNLIKKIENLDAVA-DTLEELWISYNQIASL--SGIEKLVNL 117
Query: 273 VNLDLSGNNFSNIDSV 288
L +S N +N +
Sbjct: 118 RVLYMSNNKITNWGEI 133
Score = 48.1 bits (115), Expect = 1e-06
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 58 LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-D 116
L N I + + L L +S N+I L E L L +S N+I+ + D
Sbjct: 77 LGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEID 134
Query: 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSS 169
L +L+ L L+ N + K + + ++ N+ + +
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVD 187
Score = 29.7 bits (67), Expect = 1.9
Identities = 37/198 (18%), Positives = 57/198 (28%), Gaps = 78/198 (39%)
Query: 227 LALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID 286
L I + +++ TL+ L LS NN+ I LS + L L L N I+
Sbjct: 30 LHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 287 SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
NLD++ L + L +
Sbjct: 87 -------------------NLDAVADTL---------------------------EELWI 100
Query: 347 SGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLP 405
S N +++ + +L L + N I N ID L L
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSN-NKITNWGEID-------------------KLAALD 140
Query: 406 SKLFQGNTNLKSVSLKGN 423
L+ + L GN
Sbjct: 141 --------KLEDLLLAGN 150
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 72.4 bits (178), Expect = 3e-14
Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 33/244 (13%)
Query: 37 CTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEY 96
+ ++ P E L++ +++ + + + + I + +Y
Sbjct: 5 VSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQG--IQY 61
Query: 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
+ L + N++ +S K L L L L+ N++ + F +L+ L+L N
Sbjct: 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
+ +F L +L L L +NQ+ +P V L
Sbjct: 120 QLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL---------------------- 156
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
TNL L LS N + + E F L L L L N L ++P +L++L +
Sbjct: 157 -----TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 277 LSGN 280
L N
Sbjct: 212 LHDN 215
Score = 62.7 bits (153), Expect = 4e-11
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 10/173 (5%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+L ++ + ++ +I + ++I + L ++R L L N++
Sbjct: 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLH 76
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
D+ L L +L YL L N ++++ + F LTNL L L N + + + F
Sbjct: 77 DIS--ALKELT--NLTYLILTGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDK 131
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
L L L+L++N L ++P KL+ L LDLS N ++ F L LK
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Score = 43.1 bits (102), Expect = 1e-04
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
L+ L L N++ L F+ L LN+++N++ +L K F L L LDLSYN++
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 135 SVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
+ + F D L L+ L L N + D +F L SL+ + L +N
Sbjct: 170 QSLPEGVF-DKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP 216
Score = 38.5 bits (90), Expect = 0.004
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 25/208 (12%)
Query: 250 SLDLSNNNLSAIPTKQLSKLSA-LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 308
++ +S P A + +L + ++ + + + + I ++
Sbjct: 2 TITVSTPIKQIFP----DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 57
Query: 309 SIDQPLSLSLPPLLLSL------SIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
I ++ L+L I LT L L L+GN ++ + F L
Sbjct: 58 GIQYLPNVRY----LALGGNKLHDISALKELTNL-----TYLILTGNQLQSLPNGVFDKL 108
Query: 363 FSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
+LK + L+ N L S+ F L + + N L+ LP +F TNL + L
Sbjct: 109 TNLKEL--VLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS 165
Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPL 448
N L L F L ++ L L N L
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 74.2 bits (183), Expect = 3e-14
Identities = 52/287 (18%), Positives = 97/287 (33%), Gaps = 40/287 (13%)
Query: 36 SCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-----LSFYIELRSLDLSVNKIN--- 87
+DA + + L + Q + L + ++ L L L+L N++
Sbjct: 14 ELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 72
Query: 88 --VLGSHNFEYQNKLLNLNISYNEIS-----ALSKDTFKGLKELKTLDLSYNKISVINKT 140
+ K+ L++ ++ LS T + L L+ L LS N +
Sbjct: 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQ 131
Query: 141 AFRDTL-----HLELLILSFNNITYFEDSEIFSSLK---SLRILKLDNNQILDVPNNVLS 192
+ L LE L L + +++ + S L+ + L + NN I + VL
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191
Query: 193 NL---PHQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSSNIIS-----FINESS 241
L L L + + + +L LAL SN + +
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251
Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNFSN 284
L +L + ++A L ++ +L L L+GN +
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Score = 73.1 bits (180), Expect = 6e-14
Identities = 59/278 (21%), Positives = 100/278 (35%), Gaps = 49/278 (17%)
Query: 50 NPEVQTIILRENRISNVHY-----TLSFYIELRSLDLSVNKIN-----VLGSHNFEYQNK 99
+ ++Q + L+ ++ TL L+ L LS N + +L + Q +
Sbjct: 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143
Query: 100 LLNLNISYNEIS-----ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-----HLE 149
L L + Y +S L+ + + K L +S N I+ L LE
Sbjct: 144 LEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202
Query: 150 LLILSFNNIT---YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL---PHQSLHYLY 203
L L +T + I +S SLR L L +N++ DV L P L L+
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262
Query: 204 LNENLIE--------TVLDNSFPFTLTNLHTLALSSNIIS-----FINESSFVTLRTLHS 250
+ E I VL +L L+L+ N + + E+ L S
Sbjct: 263 IWECGITAKGCGDLCRVLRAK-----ESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317
Query: 251 LDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNFSN 284
L + + + +A S + L+ L +S N +
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Score = 65.4 bits (160), Expect = 2e-11
Identities = 70/420 (16%), Positives = 138/420 (32%), Gaps = 59/420 (14%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLN-LNISYNEIS-----ALSKDTFKGLKELKTLD 128
+++SLD+ +++ + + + ++ +S + L L+
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELN 62
Query: 129 LSYNKIS-----VINKTAFRDTLHLELLILSFNNIT---YFEDSEIFSSLKSLRILKLDN 180
L N++ + + + ++ L L +T S +L +L+ L L +
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 181 NQILDVPNNVLSNL---PHQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSSNII 234
N + D +L P L L L + L + L +S+N I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 235 S-----FINESSFVTLRTLHSLDLSNNNLSAIPTKQLS----KLSALVNLDLSGNNFSNI 285
+ + + + L +L L + +++ + L ++L L L N ++
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 286 DSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLD 345
L L P+ S + L + + L L +LK L
Sbjct: 243 GMAE--------LCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLRAKESLK--ELS 290
Query: 346 LSGNNFSNIDSVAF--------KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINE 397
L+GN + + L SL + + S N L + I+
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Query: 398 N----MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-----PLERISFLDLSDNPL 448
N +++L L Q + L+ + L +S S + LDLS+N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Score = 61.1 bits (149), Expect = 5e-10
Identities = 67/387 (17%), Positives = 125/387 (32%), Gaps = 61/387 (15%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLK---SLRILK 177
++++LD+ ++S L +++ L +T +I S+L+ +L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 178 LDNNQILDVPNNVLSNL---PHQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSS 231
L +N++ DV + + P + L L + TL L L LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 232 NIIS-----FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNF 282
N++ + E L L L +LSA + L+ + L +S N+
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 283 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCD 342
+ ++ LK L + L L + L + +L+
Sbjct: 183 N--EAGVRVLCQGLKDSPCQL--------EALKLESCGVTSDNCRDLCGIVASKASLRE- 231
Query: 343 RLDLSGNNFSNIDSVAFKSLF---SLKLVKINLIPNLDSIDQ-----RAFVDNIQLETVI 394
L L N ++ S +L + + + R L+ +
Sbjct: 232 -LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290
Query: 395 INENM----NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-----PLERISFLDLSD 445
+ N + L L + L+S+ +K S + SHF + L +S+
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Query: 446 NPL-------------HCDCNLLWLWI 459
N L L LW+
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWL 377
Score = 60.7 bits (148), Expect = 6e-10
Identities = 44/252 (17%), Positives = 80/252 (31%), Gaps = 36/252 (14%)
Query: 76 LRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEIS-----ALSKDTFKGLKELKT 126
L +L L + + L L + N++ L L+T
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260
Query: 127 LDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSLK----SLRILKL 178
L + I+ L L+ L L+ N + + +L L L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320
Query: 179 DNNQILDVPNNVLSNL--PHQSLHYLYLNENLIE----TVLDNSFPFTLTNLHTLALSSN 232
+ + S++ ++ L L ++ N +E L + L L L+
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380
Query: 233 IISFINE------SSFVTLRTLHSLDLSNNNLSAIPTKQLSKL-----SALVNLDLSGNN 281
+S + ++ + +L LDLSNN L QL + L L L
Sbjct: 381 DVS--DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438
Query: 282 FSNIDSVAFKSL 293
+S ++L
Sbjct: 439 WSEEMEDRLQAL 450
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 72.5 bits (177), Expect = 6e-14
Identities = 30/160 (18%), Positives = 42/160 (26%), Gaps = 47/160 (29%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP C CT G + L L L +
Sbjct: 1 CPDACCPH-GSSGLRCTRDGALDSL---------------------HHLPGAENLTELYI 38
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
+ L +GL EL+ L + + + + A
Sbjct: 39 ENQ-----------------------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
F T L L LSFN + + L SL+ L L N
Sbjct: 76 FHFTPRLSRLNLSFNALESLSW-KTVQGL-SLQELVLSGN 113
Score = 71.7 bits (175), Expect = 1e-13
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Query: 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
+L + I +L ++ R +L + I ++ L+ + F L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSR 84
Query: 418 VSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQ 462
++L N+L L + L LS NPLHC C L WL +
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129
Score = 64.0 bits (155), Expect = 4e-11
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 221 LTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
NL L + + + + L L +L + + L + L L+LS
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 280 NNFSNIDSVAFKSLFSLKLVKIN 302
N ++ + L SL+ + ++
Sbjct: 90 NALESLSWKTVQGL-SLQELVLS 111
Score = 63.2 bits (153), Expect = 7e-11
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 167 FSSLKSLRILKLDNNQIL-DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
++L L ++N Q L + L L L L + ++ + V ++F F L
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGE--LRNLTIVKSGLRFVAPDAFHF-TPRLS 83
Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
L LS N + ++ + L +L L LS N L
Sbjct: 84 RLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 62.8 bits (152), Expect = 7e-11
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 140 TAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQS 198
+L L + + + E L LR L + + + V + P
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTP--R 81
Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
L L L+ N +E++ +L L LS N
Sbjct: 82 LSRLNLSFNALESLSWK--TVQGLSLQELVLSGN 113
Score = 50.9 bits (121), Expect = 5e-07
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 240 SSFVTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL 298
L L + N L + + L L L NL + + + AF L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 299 VKINLIPN-LDSIDQPL--SLSLPPLLLS 324
+NL N L+S+ LSL L+LS
Sbjct: 85 --LNLSFNALESLSWKTVQGLSLQELVLS 111
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 71.9 bits (177), Expect = 8e-14
Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 23/249 (9%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
P + LR + L+ + + + L + L L ++ N +
Sbjct: 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPL 139
Query: 111 SALSKDTFKGLKELKTLDLSYNK--------ISVINKTAFRDTL-HLELLILSFNNITYF 161
AL + L L+ L + ++ + + L +L+ L L + I
Sbjct: 140 RALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
S ++L++L+ LK+ N+ + + + +L L L L F
Sbjct: 199 PAS--IANLQNLKSLKIRNSPLSALGPA-IHHL--PKLEELDLRGCTALRNYPPIF-GGR 252
Query: 222 TNLHTLALSSNIISFINE--SSFVTLRTLHSLDLSNN-NLSAIPTKQLSKLSALVNLDLS 278
L L L S + L L LDL NLS +P +++L A + +
Sbjct: 253 APLKRLILKDC--SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVP 309
Query: 279 GNNFSNIDS 287
+ + +D
Sbjct: 310 PHLQAQLDQ 318
Score = 58.0 bits (141), Expect = 3e-09
Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 36/223 (16%)
Query: 92 HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151
H+ + + NL + D + D + + ++ + ++
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQIE 61
Query: 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQI---------------LDVPNNVLSNLPH 196
+ + D ++ L+L + + + + L LP
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121
Query: 197 -----QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN---------IISFINESSF 242
L L L N + L S +L L L++ + + S
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
L L SL L + ++P ++ L L +L + + S +
Sbjct: 180 QGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSAL 221
Score = 35.7 bits (83), Expect = 0.034
Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY-NEISA 112
Q++ L I ++ +++ L+SL + + ++ L + KL L++ +
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRN 244
Query: 113 LSKDTFKGLKELKTLDLS-YNKISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSL 170
F G LK L L + + + LE L L N++ + L
Sbjct: 245 YP-PIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL--IAQL 300
Query: 171 KSLRILKLDNNQILDVPNNVLSNLP 195
+ I+ + + + + P
Sbjct: 301 PANCIILVPPHLQAQLDQHRPVARP 325
Score = 33.4 bits (77), Expect = 0.21
Identities = 12/107 (11%), Positives = 21/107 (19%), Gaps = 7/107 (6%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK 402
L G+ N + N + LK
Sbjct: 16 NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA------NSNNPQIETRTGRALK 69
Query: 403 QLPSKLFQGN-TNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
L ++ L+ L F L + + + L
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 69.2 bits (170), Expect = 9e-14
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CP+ C C D C++ GL+V+P + +V + L N+ + V LS Y L +DL
Sbjct: 4 CPTECTCLDT--VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
S N+I+ L + +F +LL L +SYN + + TF GLK L+ L L N ISV+ + A
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 142 FRDTLHLELLILSFNN 157
F D L L + N
Sbjct: 122 FNDLSALSHLAI-GAN 136
Score = 60.4 bits (147), Expect = 1e-10
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
L L GN F+ + + L I+L N + ++ ++F + QL T+I++ N
Sbjct: 34 TELYLDGNQFTLVPKE-LSNY--KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWL-- 457
L+ +P + F G +L+ +SL GN +S + F L +S L + NPL+CDCN+ WL
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149
Query: 458 WI 459
W+
Sbjct: 150 WV 151
Score = 59.2 bits (144), Expect = 3e-10
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 202 LYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
LYL+ N T++ +L + LS+N IS ++ SF + L +L LS N L I
Sbjct: 36 LYLDGNQF-TLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
P + L +L L L GN+ S + AF L +L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Score = 56.2 bits (136), Expect = 2e-09
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
L LD NQ VP LSN H L + L+ N I T+ + SF +T L TL LS N
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYKH--LTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNR 89
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
+ I +F L++L L L N++S +P + LSAL +L + N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
++ L L N + + + L +DLSNN +S + + S ++ L+ L LS N
Sbjct: 31 RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 282 FSNIDSVAFKSLFSLKL 298
I F L SL+L
Sbjct: 90 LRCIPPRTFDGLKSLRL 106
Score = 32.7 bits (75), Expect = 0.22
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 387 NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSD 445
I + + + N L K +L + L N +S L F + ++ L LS
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 446 NPLHC 450
N L C
Sbjct: 88 NRLRC 92
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 71.0 bits (175), Expect = 1e-13
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+L L I++ +S D +K L TLD SYN +S + +L + N I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
+ S K + + N++ +NL +L ++ L+ N++E F
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRNMLEGDASVLF- 217
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDL 277
+ N + L+ N ++F + + L+ LDL NN + +P + L++L L +L++
Sbjct: 218 GSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNV 275
Query: 278 SGNNFS 283
S NN
Sbjct: 276 SFNNLC 281
Score = 58.7 bits (143), Expect = 1e-09
Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 25/219 (11%)
Query: 147 HLELLILSFNNIT-YFEDSEIFSSLKSLRILKLDNNQIL--DVPNNVLSNLPHQSLHYLY 203
+ L LS N+ + ++L L L + L +P ++ L LHYLY
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQ--LHYLY 107
Query: 204 LNENLIETVLDNSFPFT---LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS- 259
+ + + P + L TL S N +S S +L L + N +S
Sbjct: 108 ITHTN----VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 260 AIPTKQLSKLSALVN-LDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLS 317
AIP S L + +S N + I + +L L ++L N+ D +
Sbjct: 164 AIP-DSYGSFSKLFTSMTISRNRLTGKIPP----TFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 318 LPPLLLSLSI---PLAFSLTPLGTLKC-DRLDLSGNNFS 352
+ + LAF L +G K + LDL N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Score = 47.5 bits (114), Expect = 6e-06
Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 64/237 (27%)
Query: 221 LTNLHTLALSS-NIISFINESSFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLS 278
L L+ L + N + + L LH L +++ N+S AIP LS++ LV LD S
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFS 133
Query: 279 GNNFS-NIDSVAFKSLFSL-KLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPL 336
N S + S+ SL LV I N +S ++P S + L
Sbjct: 134 YNALSGTLPP----SISSLPNLVGITFDGNR------ISGAIPDSY--------GSFSKL 175
Query: 337 GTLKCDRLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVII 395
T + +S N + I + +L L ++L N LE
Sbjct: 176 FTS----MTISRNRLTGKIPP----TFANLNLAFVDLSRN-------------MLEGDA- 213
Query: 396 NENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP----LERISFLDLSDNPL 448
+ N + + L NSL+ + ++ LDL +N +
Sbjct: 214 ---------SVLFGS-DKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRI 256
Score = 28.3 bits (64), Expect = 7.6
Identities = 49/222 (22%), Positives = 76/222 (34%), Gaps = 39/222 (17%)
Query: 250 SLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV-----AFKSLFSLKLVKINLI 304
+ D N + ++ + NLDLSG N + L L + IN +
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 305 -----PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS-NIDSVA 358
P + + Q L + +S +IP L+ + TL LD S N S +
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIP--DFLSQIKTLV--TLDFSYNALSGTLPP-- 143
Query: 359 FKSLFSL-KLVKINL--------IPNLDSIDQRAFVDNIQLETVIINENMNLK-QLPSKL 408
S+ SL LV I IP+ ++ +L T + L ++P
Sbjct: 144 --SISSLPNLVGITFDGNRISGAIPD-------SYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 409 FQGNTNLKSVSLKGNSLS-HLEASHFPLERISFLDLSDNPLH 449
N NL V L N L + + L+ N L
Sbjct: 195 --ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 68.5 bits (168), Expect = 2e-13
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 30/187 (16%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPSRC C C G VP + + LDL
Sbjct: 1 CPSRCSCSGT--TVECYSQGRTSVPTGIPAQTT-----------------------YLDL 35
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N + L + F+ L L + N++ +L F L L L+LS N++ +
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 142 FRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
F D L L+ L L+ N + D +F L L+ L+L NQ+ VP+ V L SL
Sbjct: 96 F-DKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQ 151
Query: 201 YLYLNEN 207
Y++L++N
Sbjct: 152 YIWLHDN 158
Score = 56.6 bits (137), Expect = 2e-09
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
L L+ N + +PN V L SL LYL N ++++ + F LT+L L LS+N
Sbjct: 31 TYLDLETNSLKSLPNGVFDEL--TSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTNQ 87
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
+ + F L L L L+ N L ++P KL+ L +L L N ++ F L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 294 FSLKLVKINLIPN 306
SL+ I L N
Sbjct: 148 TSLQ--YIWLHDN 158
Score = 37.3 bits (87), Expect = 0.007
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
LDL N+ ++ + F L L ++ L N L S+ F L + ++ N
Sbjct: 31 TYLDLETNSLKSLPNGVFDEL--TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ- 87
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
L+ LP+ +F T LK ++L N L L F L ++ L L N L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 32.0 bits (73), Expect = 0.36
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 387 NIQLETVIINENMN-LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLS 444
I +T ++ N LK LP+ +F T+L + L GN L L F L +++L+LS
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 445 DNPL 448
N L
Sbjct: 85 TNQL 88
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 71.7 bits (175), Expect = 3e-13
Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 10/195 (5%)
Query: 5 LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
L + L + + E + L+ V + + R +
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL--RSKFLL 431
Query: 65 NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKEL 124
Y ++R L L+ + VL + E + +L++S+N + AL L+ L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP-PALAALRCL 488
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ L S N + ++ + L+ L+L N + + S L +L L N +
Sbjct: 489 EVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Query: 185 DVPN---NVLSNLPH 196
+ LP
Sbjct: 547 QEEGIQERLAEMLPS 561
Score = 69.0 bits (168), Expect = 2e-12
Identities = 47/274 (17%), Positives = 97/274 (35%), Gaps = 27/274 (9%)
Query: 68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
+ + +L + L+ + + + + +D ++L
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRC 354
Query: 128 DLSYNKISVIN----------KTAFRDTLHLELLILSFNNITYF----EDSEIFSSLKSL 173
+LS K +V+ + + L +IL + E + FS+LK++
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414
Query: 174 ---RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
R LD+ + + N + + + + L+L + + L + L LS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQLLLVTHLDLS 471
Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA- 289
N + + + LR L L S+N L + ++ L L L L N ++
Sbjct: 472 HNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQP 528
Query: 290 FKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPL 321
S L L+ + N + + I + L+ LP +
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
Score = 64.4 bits (156), Expect = 6e-11
Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 15/201 (7%)
Query: 58 LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY-----NEISA 112
L+E N L+ + +R+LD + + L F + + +Y ++
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLDDLRSKFLL 431
Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
+ +++ L L++ ++V+ L + L LS N + + ++L+
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA--LAALRC 487
Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
L +L+ +N + +V ++NLP L L L N ++ + L L L N
Sbjct: 488 LEVLQASDNALENVDG--VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
Query: 233 IISFINESSFVTLRTLHSLDL 253
+ L S+
Sbjct: 544 SLCQEEGIQERLAEMLPSVSS 564
Score = 64.0 bits (155), Expect = 7e-11
Identities = 48/252 (19%), Positives = 89/252 (35%), Gaps = 30/252 (11%)
Query: 47 IQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV----------LGSHNFEY 96
+ + +L ++R + +L +LSV K V L E
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPEN 381
Query: 97 QNKLLNLNISYNEISALS--KDTFKGLKELKTLD--------LSYNKISVINKTAFRDTL 146
+ LL + + + L K+T + LK +D +K + N +
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441
Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE 206
+ +L L+ ++T L + L L +N++ +P L+ L + L L ++
Sbjct: 442 DVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPA-LAAL--RCLEVLQASD 495
Query: 207 NLIETVLDNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSAIPTKQ 265
N +E V + L L L L +N + V+ L L+L N+L Q
Sbjct: 496 NALENVDGVAN---LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
Query: 266 LSKLSALVNLDL 277
L ++
Sbjct: 553 ERLAEMLPSVSS 564
Score = 44.7 bits (105), Expect = 6e-05
Identities = 44/324 (13%), Positives = 98/324 (30%), Gaps = 17/324 (5%)
Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
L + + + +SV + L+L + +
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295
Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF----TLTNLHTLA 228
+ L + + + + + + + T L
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
LS + + + + L L+ N + L L+ + FS + +V
Sbjct: 356 LSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414
Query: 289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSG 348
L ++ + + + L + + L L + LDLS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH--LDLSH 472
Query: 349 NNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
N + A +L L++++ N + N+D + +L+ +++ N L+Q +
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVAN-----LPRLQELLLCNN-RLQQSAA 525
Query: 407 -KLFQGNTNLKSVSLKGNSLSHLE 429
+ L ++L+GNSL E
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEE 549
Score = 44.0 bits (103), Expect = 1e-04
Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 16/269 (5%)
Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246
N S++ L LN+ L + + + + + L + +S+ T
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA--TDE 349
Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVK--INLI 304
L +LS + + +L L L+ + ++L L K +
Sbjct: 350 QLFRCELSVEKSTVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408
Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
L ++D P+ + L S + L L L+ + + + + L
Sbjct: 409 STLKAVD-PMRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDLTVLCH--LEQLLL 464
Query: 365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
+ ++L N A LE + ++N L+ + L+ + L N
Sbjct: 465 VT--HLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCNNR 519
Query: 425 LSHLEASH--FPLERISFLDLSDNPLHCD 451
L A R+ L+L N L +
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 35.5 bits (81), Expect = 0.052
Identities = 40/316 (12%), Positives = 76/316 (24%), Gaps = 14/316 (4%)
Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV-LSNLPHQSL-HYLYL 204
+ L+ + L+ L+L N PN+ L
Sbjct: 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242
Query: 205 NENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTK 264
+ V ++ L + S + + + L N S +
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302
Query: 265 QLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS 324
L S L S + K LK + + +Q L +
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362
Query: 325 LSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAF 384
+ S L L+ + + ++ L + + +D +
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422
Query: 385 VDNIQLETVIINENMNLKQLPSKL------------FQGNTNLKSVSLKGNSLSHLEASH 432
D + + L + + + L N L L +
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL 482
Query: 433 FPLERISFLDLSDNPL 448
L + L SDN L
Sbjct: 483 AALRCLEVLQASDNAL 498
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 66.6 bits (163), Expect = 3e-13
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 75 ELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
+++ L L ++ N + +L L+ +++++ L +LK L+LS N+
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NV 190
+S + +L L LS N I E L++L+ L L N ++ ++ + NV
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135
Query: 191 LSNLPHQSLHYL 202
LP L YL
Sbjct: 136 FKLLP--QLTYL 145
Score = 56.6 bits (137), Expect = 8e-10
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILK 177
+ ++K L L ++ + D LE L +T L L+ L+
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLE 70
Query: 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFI 237
L +N++ + P +L +L L+ N I+ + L NL +L L + ++ +
Sbjct: 71 LSDNRVSGGLEVLAEKCP--NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128
Query: 238 N---ESSFVTLRTLHSLD 252
N E+ F L L LD
Sbjct: 129 NDYRENVFKLLPQLTYLD 146
Score = 45.8 bits (109), Expect = 5e-06
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 19/141 (13%)
Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRT 247
+ L N + L L+ + L L+ + ++ I ++ L
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK 65
Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV----AFKSLFSLKLVK--- 300
L L+LS+N +S K L +L+LSGN ++ ++ ++L SL L
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
Query: 301 ----------INLIPNLDSID 311
L+P L +D
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146
Score = 30.8 bits (70), Expect = 0.55
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 47 IQLNPEVQTIILRENRISNVHYTLSFYIE-LRSLDLSVNKINVLGS-HNFEYQNKLLNLN 104
+ +++ + L +NR+S L+ L L+LS NKI L + + L +L+
Sbjct: 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
Query: 105 ISYNEISALS---KDTFKGLKELKTLD 128
+ E++ L+ ++ FK L +L LD
Sbjct: 120 LFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 27.7 bits (62), Expect = 6.1
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 338 TLKCDRLDLSGNNFSNIDSVA--FKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLETV 393
+K LD S +N ++ + F+ L L V + I NL +L+ +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK--------LNKLKKL 69
Query: 394 IINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPL 448
+++N + L + NL ++L GN + L LE + LDL + +
Sbjct: 70 ELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 66.7 bits (163), Expect = 4e-13
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 9/147 (6%)
Query: 60 ENRISNVHYTLSFYIELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISYNEISALSKDTF 118
+ RI + +R L L K N L L++ + ++
Sbjct: 11 KRRIHLELRNRTPA-AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL 67
Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
L +LK L+LS N+I +L L LS N + E L+ L+ L L
Sbjct: 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127
Query: 179 DNNQILDVPN---NVLSNLPHQSLHYL 202
N ++ ++ + +V LP L YL
Sbjct: 128 FNCEVTNLNDYRESVFKLLP--QLTYL 152
Score = 56.7 bits (137), Expect = 1e-09
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 121 LKELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLD 179
++ L L K + +LE L L + + L L+ L+L
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELS 79
Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN- 238
N+I + + LP +L +L L+ N ++ + L L +L L + ++ +N
Sbjct: 80 ENRIFGGLDMLAEKLP--NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Query: 239 --ESSFVTLRTLHSLDLSNN 256
ES F L L LD +
Sbjct: 138 YRESVFKLLPQLTYLDGYDR 157
Score = 50.1 bits (120), Expect = 2e-07
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
+ + L++ N + + L N+ IE + NL L+L + +
Sbjct: 8 MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTA-----EFVNLEFLSLINVGLI 62
Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA----FK 291
+ S+ L L L+LS N + KL L +L+LSGN +I ++ +
Sbjct: 63 SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120
Query: 292 SLFSLKLVK-------------INLIPNLDSID 311
L SL L L+P L +D
Sbjct: 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
Score = 29.7 bits (67), Expect = 1.5
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 10 LILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVP-IQLNPEVQTIILRENRISNVHY 68
L+L K N F S + GL V + P+++ + L ENRI
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88
Query: 69 TLSFYIE-LRSLDLSVNKINVLGS-HNFEYQNKLLNLNISYNEISALS---KDTFKGLKE 123
L+ + L L+LS NK+ + + + L +L++ E++ L+ + FK L +
Sbjct: 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148
Query: 124 LKTLD 128
L LD
Sbjct: 149 LTYLD 153
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 66.9 bits (164), Expect = 5e-13
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
CP+ C C CT GL+ +P + ++L +N + + F L L
Sbjct: 2 CPAMCHCEGT--TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
+L N++ + + FE + + L + N+I +S F GL +LKTL+L N+IS +
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 140 TAFRDTLH-LELLILSFNN 157
+F + L+ L L L +N
Sbjct: 120 GSF-EHLNSLTSLNL-ASN 136
Score = 60.8 bits (148), Expect = 7e-11
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
L LN+N + + + L +L L L N ++ I ++F + L L N +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
I K L L L+L N S + +F+ L SL +NL N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT--SLNLASN 136
Score = 58.9 bits (143), Expect = 3e-10
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 342 DRLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENM 399
L L+ N I S F L L K+ L N L I+ AF ++ + + EN
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLV--KLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88
Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWL- 457
+K++ +K+F G LK+++L N +S + F L ++ L+L+ NP +C+C+L W
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148
Query: 458 -WI 459
W+
Sbjct: 149 EWL 151
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 67.8 bits (166), Expect = 5e-13
Identities = 50/187 (26%), Positives = 69/187 (36%), Gaps = 31/187 (16%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPS+C C C VP + Q L L
Sbjct: 13 CPSQCSCSGT--TVDCRSKRHASVPAGIPTNAQ-----------------------ILYL 47
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N+I L F+ L L + N++ AL F L +L LDL N+++V+
Sbjct: 48 HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 142 FRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
F D L HL+ L + N +T L L L LD NQ+ +P+ L SL
Sbjct: 108 F-DRLVHLKELFMCCNKLTELPRG--IERLTHLTHLALDQNQLKSIPHGAFDRL--SSLT 162
Query: 201 YLYLNEN 207
+ YL N
Sbjct: 163 HAYLFGN 169
Score = 60.9 bits (148), Expect = 1e-10
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ L L N+I+ + F ++L+ L L N + +F SL L +L L NQ+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLT 101
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP---FTLTNLHTLALSSNIISFINESS 241
+P+ V L H L L++ N + P LT+L LAL N + I +
Sbjct: 102 VLPSAVFDRLVH--LKELFMCCNKLT-----ELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 242 FVTLRTLHSLDLSNN 256
F L +L L N
Sbjct: 155 FDRLSSLTHAYLFGN 169
Score = 44.3 bits (105), Expect = 4e-05
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
LYL++N I + F +L NL L L SN + + F +L L LDL N L+
Sbjct: 44 ILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 261 IPTKQLSKLSALVNLDLSGN 280
+P+ +L L L + N
Sbjct: 103 LPSAVFDRLVHLKELFMCCN 122
Score = 40.1 bits (94), Expect = 0.001
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
L L N + ++ F SL + L ++ L N L ++ F QL + + N
Sbjct: 43 QILYLHDNQITKLEPGVFDSL--INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ- 99
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
L LPS +F +LK + + N L+ L L ++ L L N L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 37.8 bits (88), Expect = 0.006
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 24/146 (16%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
TN L L N I+ + F +L L L L +N L A+P L+ L LDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAF-SLTPLGTLK 340
+ + S F L + L ++ + N L+ +P LT L
Sbjct: 100 LTVLPSAVFDRL--VHLKELFMCCN--------KLT--------ELPRGIERLTHLTH-- 139
Query: 341 CDRLDLSGNNFSNIDSVAFKSLFSLK 366
L L N +I AF L SL
Sbjct: 140 ---LALDQNQLKSIPHGAFDRLSSLT 162
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 68.6 bits (168), Expect = 2e-12
Identities = 58/340 (17%), Positives = 105/340 (30%), Gaps = 74/340 (21%)
Query: 36 SCTDAGLEVV--PIQLNPEVQTIILRENRISNVH-----YTLSFYIELRSLDLSVNKINV 88
+ T + V + + V+ I+L N I ++ +L + S
Sbjct: 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR 74
Query: 89 LGSHNFE----------YQNKLLNLNISYNEI-----SALSKDTFKGLKELKTLDLSYNK 133
+ E KL + +S N L L+ L L N
Sbjct: 75 VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNG 133
Query: 134 IS-------------VINKTAFRDTLHLELLILSFNNITYFED------SEIFSSLKSLR 174
+ + ++ L +I N + E+ ++ F S + L
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL---ENGSMKEWAKTFQSHRLLH 190
Query: 175 ILKLDNNQILDV-PNNVLSNL--PHQSLHYLYLNENLI---------ETVLDNSFPFTLT 222
+K+ N I ++L Q L L L +N +
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW------P 244
Query: 223 NLHTLALSSNIIS------FINESSFVTLRTLHSLDLSNNNLS-----AIPTKQLSKLSA 271
NL L L+ ++S ++ S + L +L L N + + T K+
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304
Query: 272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
L+ L+L+GN FS D V + + LD ++
Sbjct: 305 LLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344
Score = 58.2 bits (141), Expect = 3e-09
Identities = 63/343 (18%), Positives = 113/343 (32%), Gaps = 66/343 (19%)
Query: 100 LLNLNISYNEISALS-KDTFKGLKE---LKTLDLSYNKISVINKTAFRDTL----HLELL 151
+ ++ + I+ K F L E +K + LS N I + + LE+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 152 ILSFNNITYFED---------SEIFSSLKSLRILKLDNNQILDVPNNVLSNL--PHQSLH 200
S +D + L ++L +N L + H L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 201 YLYLNENLI------------ETVLDNSFPFTLTNLHTLALSSNIISFINES------SF 242
+LYL+ N + + + N L ++ N + N S +F
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NGSMKEWAKTF 183
Query: 243 VTLRTLHSLDLSNNNLSAIPTKQ-----LSKLSALVNLDLSGNNFSNIDSVAF-KSLFSL 296
+ R LH++ + N + + L+ L LDL N F+++ S A +L S
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 297 K-LVKINLIPNL------DSIDQPLSLSLPPLLLSLSI-----------PLAFSL-TPLG 337
L ++ L L ++ S L +L + L + +
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303
Query: 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 380
L L+L+GN FS D V + + LD ++
Sbjct: 304 DLL--FLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344
Score = 44.3 bits (105), Expect = 8e-05
Identities = 62/342 (18%), Positives = 114/342 (33%), Gaps = 70/342 (20%)
Query: 124 LKTLDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSLK---SLRIL 176
++ L + I+ ++ + L ++ ++LS N I + ++ L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
+ + V + + L L++ +L LHT+ LS N
Sbjct: 66 EFSDIFTGRVKDEIPEALRL-----------LLQALLKC------PKLHTVRLSDNAFGP 108
Query: 237 INESSFVTL----RTLHSLDLSNNNLSAIPTKQLSKL-------------SALVNLDLSG 279
+ + L L L NN L ++++ L ++
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168
Query: 280 NNFSNIDSVAFKSLFSL--KLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
N N + F L + ++ N I + L L
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPE----------GIEHLLLEGLAYCQ 216
Query: 338 TLKCDRLDLSGNNFSNIDSVAF-KSLFSLK-LVKINLIPN-LDSIDQRAFVD------NI 388
LK LDL N F+++ S A +L S L ++ L L + A VD NI
Sbjct: 217 ELK--VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274
Query: 389 QLETVIINEN----MNLKQLPSKLFQGNTNLKSVSLKGNSLS 426
L+T+ + N ++ L + + + +L + L GN S
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
Score = 40.9 bits (96), Expect = 8e-04
Identities = 41/244 (16%), Positives = 71/244 (29%), Gaps = 52/244 (21%)
Query: 246 RTLHSLDLSNNNLSAIPTKQ----LSKLSALVNLDLSGNNFSNIDSVAF-------KSLF 294
++ L + ++ K L + ++ + LSGN + K L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
+ I D I + L L L +L L + LS N F
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRL------------LLQALLKCPKLH--TVRLSDNAFGPT 109
Query: 355 DSVAFKSLFSL--KLVKINLIPN--------------LDSIDQRAFVDNIQLETVIINEN 398
S L + L N + + + L ++I N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 399 M----NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF------PLERISFLDLSDNPL 448
++K+ +K FQ + L +V + N + H + + LDL DN
Sbjct: 170 RLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
Query: 449 HCDC 452
Sbjct: 229 THLG 232
Score = 38.5 bits (90), Expect = 0.006
Identities = 50/319 (15%), Positives = 91/319 (28%), Gaps = 86/319 (26%)
Query: 148 LELLILSFNNITYFEDSEIFSSLK---SLRILKLDNNQILDVPNNVLSNL--PHQSLHYL 202
+E L + IT ++ +F+ L S++ + L N I LS + L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP 262
++ V D L L + + LH++ LS+N
Sbjct: 66 EFSDIFTGRVKDE----IPEALRLLL-----------QALLKCPKLHTVRLSDNAFGPTA 110
Query: 263 TKQLSKL----SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
+ L + L +L L N ++ +L
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK------------------------IARAL 146
Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
L ++ A L + N N +
Sbjct: 147 QELAVNKKAKNAPPLR--------SIICGRNRLENGSMKEW------------------- 179
Query: 379 IDQRAFVDNIQLETVIINEN----MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF- 433
+ F + L TV + +N ++ L + LK + L+ N+ +HL +S
Sbjct: 180 --AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 434 ----PLERISFLDLSDNPL 448
+ L L+D L
Sbjct: 238 IALKSWPNLRELGLNDCLL 256
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 66.3 bits (162), Expect = 7e-12
Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 35/255 (13%)
Query: 76 LRSLDLSVNKINVLGSHNF-----EYQNKLLNLNISYNEIS-----ALSKDTFKGLKELK 125
+ SLDLS+N + + + + +LN+S N + L + +
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 126 TLDLSYNKISVINKTAFRDTL-----HLELLILSFNNITYFEDSEIFSSLK----SLRIL 176
+L+LS N +S + TL + +L L +N+ + SE + S+ L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 177 KLDNNQILDVPNNVLSNL---PHQSLHYLYLNENLIE----TVLDNSFPFTLTNLHTLAL 229
L N + ++ L + +++ L L N + L ++ +L L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203
Query: 230 SSNII-----SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGN 280
S+N++ + + + SL+L N L + L L L + L +
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263
Query: 281 NFSNIDSVAFKSLFS 295
N+ K+L +
Sbjct: 264 IVKNMSKEQCKALGA 278
Score = 61.3 bits (149), Expect = 3e-10
Identities = 59/384 (15%), Positives = 125/384 (32%), Gaps = 66/384 (17%)
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-----HLELLILSF 155
+N ++ + S ++ + +LDLS N + I+ + L LS
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 156 NNITYFEDSEIFSSLKS----LRILKLDNNQILDVPNNVLSNL---PHQSLHYLYLNENL 208
N++ + E+ L + + L L N + ++ L ++ L L N
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 209 IE----TVLDNSFPFTLTNLHTLALSSNIIS-----FINESSFVTLRTLHSLDLSNNNLS 259
+ +F ++ +L L N + + + ++SL+L NNL+
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Query: 260 AIPTKQLSKL-----SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
+ +L+K +++ +LDLS N + + ++ L
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI--FSSIPNHV--------VSL 230
Query: 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374
+L L L L L L+ + L + N+ K+L +
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQ--TVYLDYDIVKNMSKEQCKALGA---------- 278
Query: 375 NLDSIDQRAFVDNIQLETVIINEN----MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
AF + ++ V N + + + + + + SL L +
Sbjct: 279 --------AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQK 330
Query: 431 SHFPLERISF------LDLSDNPL 448
+E ++ + PL
Sbjct: 331 HQTNIEDLNIPDELRESIQTCKPL 354
Score = 59.3 bits (144), Expect = 1e-09
Identities = 37/242 (15%), Positives = 85/242 (35%), Gaps = 34/242 (14%)
Query: 76 LRSLDLSVNKINVLG----SHNFEYQN-KLLNLNISYNEIS-----ALSKDTFKGLKELK 125
+ SL+LS N ++ + L++ +N+ S + +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 126 TLDLSYNKISVINKTAFRDTL-----HLELLILSFNNITYFEDSEIFSSLK----SLRIL 176
+L+L N + + + L ++ L L NN+ +E+ L S+ L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 177 KLDNNQILDVPNNVLSNL---PHQSLHYLYLNENLIETV----LDNSFPFTLTNLHTLAL 229
L N + L+ + + L L N + L +L +L T+ L
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD-SLKHLQTVYL 260
Query: 230 SSNIISFINE-------SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
+I+ +++ ++F ++ + +D + + + +S L ++ +
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSL 320
Query: 283 SN 284
N
Sbjct: 321 LN 322
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 20/130 (15%)
Query: 76 LRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEISALSKDTFKGLKE-------L 124
+ SL+L +N ++ + L + + Y+ + +SK+ K L +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 125 KTLDLSYNKISVINKTAFRDTL-----HLELLILSFNNITY----FEDSEIFSSLKSLRI 175
+D + +I + + + ++ L + + + E + LR
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346
Query: 176 LKLDNNQILD 185
+L+
Sbjct: 347 SIQTCKPLLE 356
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 55.2 bits (133), Expect = 2e-09
Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 44/126 (34%)
Query: 413 TNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWL--WILVQLQVKSTM 469
+ + L GN+L+ L L + L NP CDC L+ L W+
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL---------- 80
Query: 470 ETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP 529
+L+C +PP ++G + +
Sbjct: 81 -------------------------------AGRPERAPYRDLRCVAPPALRGRLLPYLA 109
Query: 530 ENSVHC 535
E+ +
Sbjct: 110 EDELRA 115
Score = 37.1 bits (86), Expect = 0.003
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
L L+ NNL+A+P L L AL L N +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 35.2 bits (81), Expect = 0.016
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L L N + +P +L LP +L +L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALP--ALRTAHLGAN 65
Score = 32.5 bits (74), Expect = 0.13
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
L+L+ NN+T + +L +LR L N
Sbjct: 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGANP 66
Score = 30.5 bits (69), Expect = 0.63
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
L ++ N ++AL L L+T L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.5 bits (69), Expect = 0.64
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEV--VPIQLNPEVQTIILRENRISNV-HYTLSFYIELRS 78
CP+ C C C GL +P + ++L N ++ + L LR+
Sbjct: 2 CPAPCSC--AGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRT 59
Query: 79 LDLSVN 84
L N
Sbjct: 60 AHLGAN 65
Score = 29.8 bits (67), Expect = 1.00
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 205 NENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN 256
L L +FP T L L+ N ++ + L L + L N
Sbjct: 17 RRGLTWASLPTAFPVDTTELV---LTGNNLTALPPGLLDALPALRTAHLGAN 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 3e-09
Identities = 78/457 (17%), Positives = 143/457 (31%), Gaps = 124/457 (27%)
Query: 30 DQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVL 89
+E S +V+ + L E + L N ++H L+ + + V ++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLT-EFENCYLEGN---DIH-ALAAKLLQENDTTLVKTKELI 123
Query: 90 GSHNFEYQ-NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL 148
++ + SAL + +G +L +
Sbjct: 124 KNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--------------------- 159
Query: 149 ELLILSF----NNITYFED-SEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQS----- 198
F N YFE+ +++ + L + ++ LS L +
Sbjct: 160 ------FGGQGNTDDYFEELRDLYQTYHVL--VG----DLIKFSAETLSELIRTTLDAEK 207
Query: 199 LHYLYLNENLIETVLDN--SFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS-- 254
+ LN I L+N + P L ++ +S +I I + +V T L +
Sbjct: 208 VFTQGLN---ILEWLENPSNTP-DKDYLLSIPISCPLIGVIQLAHYVV--TAKLLGFTPG 261
Query: 255 --NNNLSAIPTKQLSKLSAL-VNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
+ L ++A+ + S +F A LF + + PN
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN----- 316
Query: 312 QPLSLSLPPLLLSLSI------PLAFSLTP-LGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
SLPP +L S+ P +P L + + ++ L +
Sbjct: 317 ----TSLPPSILEDSLENNEGVP-----SPMLSISNLTQEQV----QDYVNKTN-SHLPA 362
Query: 365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
K V+I+L+ N + V + P L+ N L+
Sbjct: 363 GKQVEISLV-N----GAKNLV---------------VSGPPQSLYGLNLTLRKAKAP--- 399
Query: 425 LSHLEASHFPL-ER-----ISFLDLSDNPLHCDCNLL 455
S L+ S P ER FL ++ +P H LL
Sbjct: 400 -SGLDQSRIPFSERKLKFSNRFLPVA-SPFHSH--LL 432
Score = 37.7 bits (87), Expect = 0.014
Identities = 49/279 (17%), Positives = 101/279 (36%), Gaps = 79/279 (28%)
Query: 57 ILRENRIS-NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
I+ N ++ +H+ + + N ++ + + K + NE +
Sbjct: 1664 IVINNPVNLTIHFGGE-----KGKRIRENYSAMIFETIVDGKLKTEKIFKEINE--HSTS 1716
Query: 116 DTFKGLKELKTLDLSYNK---ISVINKTAFRDTLHLELLILSFNNITYF------EDSEI 166
TF+ K L L + ++++ K AF D L + LI F E
Sbjct: 1717 YTFRSEKGL--LSATQFTQPALTLMEKAAFED-LKSKGLI---PADATFAGHSLGE---- 1766
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV------LDNSFP-- 218
+++L SL +V+S + E+L+E V + + P
Sbjct: 1767 YAALASL--------------ADVMS-----------I-ESLVEVVFYRGMTMQVAVPRD 1800
Query: 219 -FTLTNLHTLALS-SNIISFINESSF------VTLRTLHSLDLSNNNLSAIPTKQ----- 265
+N +A++ + + ++ + V RT +++ N N + +Q
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN---VENQQYVAAG 1857
Query: 266 -LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
L L + N+ L+ ID + + SL+ V+ +L
Sbjct: 1858 DLRALDTVTNV-LNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 36.2 bits (83), Expect = 0.039
Identities = 66/385 (17%), Positives = 114/385 (29%), Gaps = 140/385 (36%)
Query: 2 NYFLTCIF---LILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIIL 58
+Y L+ LI + +L + G P +L ++
Sbjct: 229 DYLLSIPISCPLI-GVIQL--------AH-----YVVTAKLLGFT--PGELRSYLKGATG 272
Query: 59 R----------------ENRISNVH--YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKL 100
E+ +V T+ F+I +R + Y N
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--------------AYPNTS 318
Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY 160
L ++ +D+ + + + + LS IS + + ++ + N ++
Sbjct: 319 LP--------PSILEDSLENNEGVPSPMLS---ISNLTQE------QVQDYVNKTN--SH 359
Query: 161 F-EDSEIFSSLKSLRILKLDNNQILDVPNN-VLSNLPHQSLHYL--YLNENLIETVLDNS 216
++ SL N N V+S P QSL+ L L + + LD S
Sbjct: 360 LPAGKQVEISLV--------NG-----AKNLVVSGPP-QSLYGLNLTLRKAKAPSGLDQS 405
Query: 217 -FPFTLTNLHTLALSSNIISFINESSF--VTLRTLHSLDLSNNNLSAIPTKQLSKLSALV 273
PF S + F N F V HS L L S L+
Sbjct: 406 RIPF----------SERKLKFSNR--FLPVASP-FHS-HL------------LVPASDLI 439
Query: 274 NLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP--------NLDSIDQPLSLSLPPLLLSL 325
N DL NN V+F + ++ IP +L + +S + ++ L
Sbjct: 440 NKDLVKNN------VSFNAK-DIQ------IPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 326 SI--PLAFSLTPLGTLKCDRLDLSG 348
+ L SG
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASG 511
Score = 35.0 bits (80), Expect = 0.080
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 28/96 (29%)
Query: 20 AICPSRCQ--CFDQKLEASCTDAG------LEVVPIQLNPEVQTIILRENRISNVHYTLS 71
AI P R + L+ G +E+V N E Q + +
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIV--NYNVENQQYV-----AAG------ 1857
Query: 72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
+LR+LD N +N + ++ L S
Sbjct: 1858 ---DLRALDTVTNVLNFIKLQKI----DIIELQKSL 1886
Score = 31.9 bits (72), Expect = 0.79
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 42 LEVVPIQLNPEVQTII--------LRENRISNV-HYTLSFYIELRSLDLSVNKINVLGSH 92
L++V NP TI +REN + + + ++ + +N+ S+
Sbjct: 1662 LDIV--INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE--HSTSY 1717
Query: 93 NFEYQNKLLNLNISYNE---ISALSKDTFKGLKE 123
F + LL+ + ++ + K F+ LK
Sbjct: 1718 TFRSEKGLLSA--TQFTQPALTLMEKAAFEDLKS 1749
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 6e-09
Identities = 85/530 (16%), Positives = 161/530 (30%), Gaps = 159/530 (30%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDS--EIFSSLKSLRILKLDN 180
E Y I + + AF D + +D I S K +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNF----------DCKDVQDMPKSILS--------KEEI 51
Query: 181 NQILDVPNNVLSNLPHQSLHYLYL-----NENL----IETVLDNSFPFTLTNLHTLALSS 231
+ I+ + V L+ E + +E VL ++ F ++ + T
Sbjct: 52 DHIIMSKDAV------SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT----E 101
Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIP-----TKQLSKL-SALVNLDLSGNNF--- 282
+ ++ R L N+N + KL AL+ L + N
Sbjct: 102 QRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 283 -----------SNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAF 331
S + K+ +NL N +S + ++ +L L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPE-----TVLEMLQKLLYQIDP 211
Query: 332 SLTPLGTLKCDRLDLSGNNFSNIDSV--AFKSLFSLKLVKINLIPNLDSI-DQR---AFV 385
+ R D S N I S+ + L K + L+ L ++ + + AF
Sbjct: 212 NW-------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAF- 262
Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSD 445
N+ + ++ T K V+ + LS +H L+ S D
Sbjct: 263 -NLSCKILLT-----------------TRFKQVT---DFLSAATTTHISLDHHSMTLTPD 301
Query: 446 NPLHCDCNLL--WLWILVQ---LQVKST--METTTVAYEMTSNTSISPGTTTEAQRVDRI 498
+LL +L Q +V +T + +A E + T + V+
Sbjct: 302 EVK----SLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRD---GLATWDNWKHVN-C 352
Query: 499 IKNNHSLTIVLNNLKCSSPPDIKGL-EVKAV-PENSVHCESNTMLYVLSFMLLLLSSGVI 556
K + LN L+ P + + + + +V P + H + + ++
Sbjct: 353 DKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPS-AH----------------IPTILL 392
Query: 557 CILMYFIYRKRALWKNKINR------NLKHQSSYVDNCMNSHPTPILMLY 600
+ +W + I N H+ S V+ I +Y
Sbjct: 393 SL----------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Score = 47.2 bits (111), Expect = 2e-05
Identities = 42/245 (17%), Positives = 96/245 (39%), Gaps = 60/245 (24%)
Query: 2 NYF-LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRE 60
N F L+C IL T+ K + D A+ T L+ + L P+ + L
Sbjct: 260 NAFNLSC--KILLTTR-FKQV-------TDFLSAATTTHISLDHHSMTLTPD-EVKSL-- 306
Query: 61 NRISNVHYTLSFYIELRSLDL-----SVN--KINVLGSHNFEYQNKLLN-LNISYNEISA 112
L Y++ R DL + N +++++ + N +++ ++++
Sbjct: 307 ---------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 113 LSKDTFKGLK--ELKTLDLSYNKISVINKTAFRDTLHLELLILSF--NNITYFEDSEIFS 168
+ + + L+ E + + ++++SV F + H+ ++LS ++ + + +
Sbjct: 358 IIESSLNVLEPAEYRKM---FDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 169 SLKSLRILKLDNNQ----ILDV------PNNVLSNLPHQSL--HYL----YLNENLIETV 212
L +++ + I + L H+S+ HY + +++LI
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPY 468
Query: 213 LDNSF 217
LD F
Sbjct: 469 LDQYF 473
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 53.8 bits (130), Expect = 1e-08
Identities = 45/186 (24%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPSRC C ++ C GL VP + L+L
Sbjct: 1 CPSRCSCSGTEIR--CNSKGLTSVPTGIPSSAT-----------------------RLEL 35
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
NK+ L F+ +L L++S N+I +L F L +L L L NK+ +
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN-- 93
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
+F L L+ L LD NQ+ VP+ + L SL
Sbjct: 94 -----------------------GVFDKLTQLKELALDTNQLKSVPDGIFDRL--TSLQK 128
Query: 202 LYLNEN 207
++L+ N
Sbjct: 129 IWLHTN 134
Score = 49.2 bits (118), Expect = 5e-07
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
L L N ++++ F LT L L+LS N I + + F L L L L N L +
Sbjct: 32 RLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
+P KL+ L L L N ++ F L SL+ KI L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ--KIWLHTN 134
Score = 38.4 bits (90), Expect = 0.003
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
++ L L SN + + F L L L LS N + ++P KL+ L L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 282 FSNIDSVAFKSLFSLK 297
++ + F L LK
Sbjct: 88 LQSLPNGVFDKLTQLK 103
Score = 30.3 bits (69), Expect = 1.2
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 387 NIQLETVIINENMN-LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLS 444
I + N L+ LP +F T L +SL N + L F L +++ L L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 445 DNPL 448
+N L
Sbjct: 85 ENKL 88
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 50.9 bits (122), Expect = 6e-07
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 39/237 (16%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L + K+ LG ++LL+ + E + + L L+ L+L+ +++
Sbjct: 28 LENAQAIKKKLGKLGRQVLP-PSELLDHLFFHYEFQNQRF-SAEVLSSLRQLNLAGVRMT 85
Query: 136 VINKTAFRDTLH-----LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
+ T L L+ + L+ + + R L L N +
Sbjct: 86 PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145
Query: 191 LSNL---PHQSLHYLYLNENLI---------ETVLDNSFPFTLTNLHTLALSSNIISFIN 238
L +L + L L+ N + E + N T++ L+L +
Sbjct: 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN------TSVTHLSLLHTGLG--- 196
Query: 239 ESSFVTL-------RTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNFSN 284
+ L R L L+++ N L++ +L L L N S+
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253
Score = 49.3 bits (118), Expect = 2e-06
Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 52/304 (17%)
Query: 76 LRSLDLSVNKINVLG--------SHNFEYQNKLLNLNISYNEISALS-KDTFKGLKELKT 126
LR L+L+ ++ + ++ L +N++ ++ + +
Sbjct: 74 LRQLNLAGVRMTPVKCTVVAAVLGSG---RHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 127 LDLSYNKISVINKTAFRDTL-----HLELLILSFNNITYFEDSEIFSSLK---SLRILKL 178
L L N + RD L + L LS N +T + + L S+ L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 179 DNNQILDVPNNVLSNL--PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
+ + D +L+ ++ L L + N + LAL+
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA------------GDTAALALARAARE- 237
Query: 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSK----LSALVNLDLSGNNFSNIDSVAFKS 292
+L L L N LS+ + L + +S + +
Sbjct: 238 --------HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289
Query: 293 LFS-LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFS--LTPLGTLKCDRLDLSGN 349
L + + + + L L + P + L G ++ L
Sbjct: 290 LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVR--ALLEQLG 347
Query: 350 NFSN 353
+ +
Sbjct: 348 SSGS 351
Score = 45.1 bits (107), Expect = 4e-05
Identities = 31/232 (13%), Positives = 62/232 (26%), Gaps = 39/232 (16%)
Query: 76 LRSLDLSVNKI-----NVLGSHNFEYQNKLLNLNISYNEISALS-KDTFKGLKE---LKT 126
R L L +N + L Q ++ L +S N ++A +GL +
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187
Query: 127 LDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSLK---SLRILKLD 179
L L + + L L+ L +++N + + + SL +L L
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247
Query: 180 NNQILDVPNNVLS-----NLPHQSLHYLYLNENLIE--------------TVLDNSFPFT 220
N++ VL + + D +
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307
Query: 221 LTNLHTLALSSNIISFINESSFVTL----RTLHSLDLSNNNLSAIPTKQLSK 268
L L + + +N L + +L + +
Sbjct: 308 HLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 48.6 bits (116), Expect = 3e-06
Identities = 49/293 (16%), Positives = 99/293 (33%), Gaps = 26/293 (8%)
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE---TVL 213
+ + + SL++L + N +I + Y+Y+ + + +
Sbjct: 35 KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP--NGKFYIYMANFVPAYAFSNV 92
Query: 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALV 273
N L + LS I + I +++F L + + + L+ +
Sbjct: 93 VNGVTKGKQTLEKVILSEKIKN-IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAI 151
Query: 274 NLDLS----GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID--------QPLSLSLPPL 321
+ L + + AF L+ + + ++ QP ++ +
Sbjct: 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLE--TTIQVGAMGKLEDEIMKAGLQPRDINFLTI 209
Query: 322 LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ 381
L F L LD+S N + I F L +K+ NL +I Q
Sbjct: 210 EGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP--HNLKTIGQ 266
Query: 382 RAFVDNIQLE-TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF 433
R F + +L T+ + ++ + F G NL+ V G+ ++ L F
Sbjct: 267 RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317
Score = 42.8 bits (101), Expect = 2e-04
Identities = 51/330 (15%), Positives = 102/330 (30%), Gaps = 64/330 (19%)
Query: 76 LRSLDLSVNKI----NVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131
L+ LD+S +I G++ + + S + KG + L+ + LS
Sbjct: 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS- 109
Query: 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191
KI I AF+ +L++ + + S+ ++ I P
Sbjct: 110 EKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI-----------PLGSS 158
Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF---VTLRTL 248
+F L T + + + + R +
Sbjct: 159 DAY------------RFKNRWEHFAF-IEGEPLETTIQVGAMGK-LEDEIMKAGLQPRDI 204
Query: 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 308
+ L + +A + LV+LD+S N + I F L +K+ NL
Sbjct: 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP--HNLK 262
Query: 309 SIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLS---GNNFSNIDSVAFKSLFSL 365
+I Q FS C RL + + + I+ AF +L
Sbjct: 263 TIGQ----------------RVFS-------NCGRLAGTLELPASVTAIEFGAFMGCDNL 299
Query: 366 KLVKINLIPN-LDSIDQRAFVDNIQLETVI 394
+ + + + ++ F + + + +
Sbjct: 300 R--YVLATGDKITTLGDELFGNGVPSKLIY 327
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 42.2 bits (100), Expect = 1e-04
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 27/106 (25%)
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
L ++ N+I+ L F L L+ L + NK++ I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI------------------------ 72
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
+ +F L L L L++N + +P NL +SL ++YL N
Sbjct: 73 -PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL--KSLTHIYLYNN 115
Score = 39.9 bits (94), Expect = 6e-04
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPS+C C + +C + L VP + + + L L
Sbjct: 6 CPSQCSC--DQTLVNCQNIRLASVP-----------------AGIPTD------KQRLWL 40
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
+ N+I L F++ L L + N+++A+ F L +L LDL+ N + I + A
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100
Query: 142 F 142
F
Sbjct: 101 F 101
Score = 39.9 bits (94), Expect = 7e-04
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
T+ L L++N I+ + F L L L ++N L+AIPT KL+ L LDL+ N+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 282 FSNIDSVAFKSLFSLK 297
+I AF +L SL
Sbjct: 93 LKSIPRGAFDNLKSLT 108
Score = 38.4 bits (90), Expect = 0.003
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN----LIETVLDNSFPFTLTNLHTL 227
+ L L+NNQI + V +L +L LY N N + V D LT L L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLV--NLQQLYFNSNKLTAIPTGVFDK-----LTQLTQL 86
Query: 228 ALSSNIISFINESSFVTLRTLHSLDLSNN 256
L+ N + I +F L++L + L NN
Sbjct: 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 42.2 bits (100), Expect = 1e-04
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
L + N+I+ L F L +L LDL N+++V+
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL------------------------ 69
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
+ +F L L L L++NQ+ +P NL +SL +++L N
Sbjct: 70 -PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHIWLLNN 112
Score = 40.7 bits (96), Expect = 3e-04
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 25/121 (20%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
CPS+C C C+ L VP + + T + L L
Sbjct: 3 CPSQCSCSGT--TVDCSGKSLASVP-----------------TGIPTT------TQVLYL 37
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
N+I L F+ +L L++ N+++ L F L +L L L+ N++ I + A
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 142 F 142
F
Sbjct: 98 F 98
Score = 40.3 bits (95), Expect = 5e-04
Identities = 27/76 (35%), Positives = 35/76 (46%)
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
T L L N I+ + F L L LDL NN L+ +P KL+ L L L+ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 282 FSNIDSVAFKSLFSLK 297
+I AF +L SL
Sbjct: 90 LKSIPRGAFDNLKSLT 105
Score = 38.8 bits (91), Expect = 0.001
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN----LIETVLDNSFPFTLTNLHTL 227
+ ++L L +NQI + V L L L L+ N L V D LT L L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLT--QLTRLDLDNNQLTVLPAGVFDK-----LTQLTQL 83
Query: 228 ALSSNIISFINESSFVTLRTLHSLDLSNN 256
+L+ N + I +F L++L + L NN
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 27.6 bits (62), Expect = 9.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
+ +L +F T L + L N L+ L A F L +++ L L+DN L
Sbjct: 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 41.5 bits (97), Expect = 7e-04
Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 33/235 (14%)
Query: 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
L+ ++ +EI ++L+ L+ + + D+ + L+ L L L+
Sbjct: 89 FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD-- 146
Query: 208 LIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLS 267
FT L ++ R + +L + ++ S K L
Sbjct: 147 -------KCSGFTTDGLLSIVTH--------------CRKIKTLLMEESSFSEKDGKWLH 185
Query: 268 KLSA----LVNLDLSGNNFSNIDSVAFKSLF----SLKLVKINLIPNLDSIDQPLSLSLP 319
+L+ L L+ F+ I +++ SL VK+ L+ + + +
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245
Query: 320 PLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSL--KLVKINL 372
S+ + L S + LF ++ K++L
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300
Score = 29.5 bits (66), Expect = 3.6
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 24/143 (16%)
Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE 206
LE + + ++IT I + LK+L +L LD + + L +
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL---LDREERITDLPLDNGVRSLLIG- 434
Query: 207 NLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL----RTLHSLDLSNNNLSAIP 262
L A + + + + + L S
Sbjct: 435 --------------CKKLRRFAFYLR-QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479
Query: 263 TKQLSK-LSALVNLDLSGNNFSN 284
+ S+ L L++ G FS
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSE 502
Score = 29.1 bits (65), Expect = 4.5
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 3/129 (2%)
Query: 75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY-NK 133
E L+ + N + KL L +SY + + F +++ LDL Y
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALL 305
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSN 193
+ + T + +LE+L N I + K L+ L+++ +
Sbjct: 306 ETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364
Query: 194 LPHQSLHYL 202
+ + L L
Sbjct: 365 VSQRGLIAL 373
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 40.4 bits (94), Expect = 9e-04
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%)
Query: 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE 109
+ Q + L+ R + + L + ++ E +LL+LN+S N
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE----ENIPELLSLNLSNNR 181
Query: 110 ISALS--KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED---- 163
+ L + LK L+LS N++ + L LE L L N++
Sbjct: 182 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQST 241
Query: 164 --SEIFSSLKSLRILKLDNNQI 183
S I L +LD +++
Sbjct: 242 YISAIRERFPKLL--RLDGHEL 261
Score = 38.1 bits (88), Expect = 0.005
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 94 FEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLIL 153
++ + L+L ++ ++++ L + + I + L L L
Sbjct: 125 YDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE-------ENIPELLSLNL 177
Query: 154 SFNNITYFED-SEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIET 211
S N + +D S I +L+IL L N++ + + L L L+L+ N +
Sbjct: 178 SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK---LEELWLDGNSLCD 234
Score = 30.4 bits (68), Expect = 1.7
Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 20/174 (11%)
Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
LK N +ILD N +S + + S + L ++ + ++
Sbjct: 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG 136
Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
++ V L+ + ++A + L++L+LS N +D ++ +
Sbjct: 137 LRSDPDLVAQNIDVVLNRRSC-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 195
Query: 296 LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349
L +NL N + L + LK + L L GN
Sbjct: 196 PNLKILNLSGNE-------------------LKSERELDKIKGLKLEELWLDGN 230
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 40.3 bits (93), Expect = 0.001
Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 39/242 (16%)
Query: 50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYN 108
+ + EN+ H+ F+ ++ + ++ I + S + L NL I
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182
Query: 109 EISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI-- 166
++ K LK L + SV+ D +LE L+L Y D ++
Sbjct: 183 NNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241
Query: 167 ------FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT 220
+L+ L + + + +V +
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD------------------------I 277
Query: 221 LTNLHTLALSSNIISFINESSFV----TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
L L T+ +S+ +++ + ++ L +++ N LS K+L K S + +D
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK-SLPMKID 336
Query: 277 LS 278
+S
Sbjct: 337 VS 338
Score = 39.9 bits (92), Expect = 0.002
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS--------FPFT 220
+L+ L++ + + D + +L L L + + D
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250
Query: 221 LTNLHTLALSSNIISFINESSFVT---LRTLHSLDLSNNNLSAIPTKQL----SKLSALV 273
NL L + + F+ L L ++D+S L+ + L K+ L
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 274 NLDLSGNNFSN 284
+++ N S+
Sbjct: 311 FINMKYNYLSD 321
Score = 39.6 bits (91), Expect = 0.002
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 164 SEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTN 223
S + ++ L LK+ L + NL + L ++++E +L + P N
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP----N 220
Query: 224 LHTLALSSNIISFINESSFVTLR---------TLHSLDLSNNNLSAIPTKQLSK---LSA 271
L L L + + + R L L + + + + + L
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 272 LVNLDLSGNNFSNIDSVAF 290
L +D+S ++ +
Sbjct: 281 LETMDISAGVLTDEGARLL 299
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 39.3 bits (92), Expect = 0.003
Identities = 55/359 (15%), Positives = 125/359 (34%), Gaps = 47/359 (13%)
Query: 104 NISYNEISALSKDTFKGLKELKTLDLSY---------NKISVINKTAFRDTLHLELLILS 154
+ S ++ A + +L L+++ K++ + F ++ ++ ++
Sbjct: 25 DFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVT 84
Query: 155 F------------NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYL 202
+ E+ + LK + L N+ + +P + N + +
Sbjct: 85 ITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILPNS-VKSIPKDAFRN---SQIAKV 140
Query: 203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP 262
LNE L + + F + + + S + + E F L DLS ++ +P
Sbjct: 141 VLNEGL--KSIGDMA-FFNSTVQEIVFPSTLEQ-LKEDIFYYCYNLKKADLSKTKITKLP 196
Query: 263 TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQP-------LS 315
+ + + L I S AF LK I + N+ +I Q +
Sbjct: 197 -ASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLK--TIEIPENVSTIGQEAFRESGITT 252
Query: 316 LSLPPLLLSLSIPLAFSL-TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374
+ LP + +++ AF L + + + + I + L + +
Sbjct: 253 VKLPNGVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA--RFEIPE 309
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF 433
++ + Q N ++ + I N+ Q+ F NT +K V ++G + + +
Sbjct: 310 SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN-NTGIKEVKVEGTTPPQVFEKVW 365
Score = 35.1 bits (81), Expect = 0.066
Identities = 48/369 (13%), Positives = 120/369 (32%), Gaps = 68/369 (18%)
Query: 63 ISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
+ T++ + +S + ++ + V E + + N + ++ KD F+
Sbjct: 78 VDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIILP-NSVKSIPKDAFRN-S 135
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
++ + L+ + I AF ++ ++ ++ + + ++ IF +L+ L +
Sbjct: 136 QIAKVVLN-EGLKSIGDMAFFNS-TVQEIVFP-STLEQLKED-IFYYCYNLKKADLSKTK 191
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
I T L S F + + L + I +F
Sbjct: 192 I---------------------------TKLPAST-FVYAGIEEVLLPVTLKE-IGSQAF 222
Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
+ L ++++ N +S I + + S + + L N +NI S AF L ++
Sbjct: 223 LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELA--EVT 277
Query: 303 LIPNLDSIDQPLSL-----SLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357
+ + D + P L IP + +
Sbjct: 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--------------------ESIRILGQG 317
Query: 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
+ ++ + N+ I+ AF + ++ V + + + ++
Sbjct: 318 LLGGNRKVT--QLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374
Query: 418 VSLKGNSLS 426
+ + S+
Sbjct: 375 IRVPAESVE 383
Score = 28.5 bits (64), Expect = 7.7
Identities = 30/235 (12%), Positives = 76/235 (32%), Gaps = 20/235 (8%)
Query: 84 NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
+ + L F Y L ++S +I+ L TF ++ + L + I AF
Sbjct: 166 STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG-IEEVLLP-VTLKEIGSQAFL 223
Query: 144 DTLHLELLILSFNNITYFEDSEIF--SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
T L+ + + N++ F S + ++++ N + ++ + P L
Sbjct: 224 KTSQLKTIEIP-ENVSTIGQE-AFRESGITTVKL----PNGVTNIASRAFYYCP--ELAE 275
Query: 202 LYLNENLIE----TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
+ + ++ L + +I + + R + L + N
Sbjct: 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRI-LGQGLLGGNRKVTQLTIP-AN 333
Query: 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ 312
++ I + + + + + G + + F + I + +
Sbjct: 334 VTQINFSAFNN-TGIKEVKVEGTTPPQVFEKVWYG-FPDDITVIRVPAESVEKYK 386
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 39.5 bits (92), Expect = 0.003
Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 18/198 (9%)
Query: 119 KGLKELKTLDLSYNKISVINKTAFRD----TLHLELLILS--FNNITYFEDSEIFSSLKS 172
+ LK LDL + + ++ L L +S + +++ + + +
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212
Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
L+ LKL+ L+ +L P + + + L+ L +
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL-RCLS 271
Query: 233 IISFINESSFVTL----RTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLSGNNFSNIDS 287
+ + L +L+LS + + +L + L L + I+
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV----LDYIED 327
Query: 288 VAFKSLFSL--KLVKINL 303
+ L S L ++ +
Sbjct: 328 AGLEVLASTCKDLRELRV 345
Score = 31.8 bits (72), Expect = 0.72
Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 16/164 (9%)
Query: 24 SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN--VHYTLSFYIELRSLDL 81
+ F + + T+ GL V P++++++ +++N + + L
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404
Query: 82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
+ + L L A+ + K+L+ L LS + +
Sbjct: 405 CIIEPKAP---------DYLTLEPLDIGFGAIVE----HCKDLRRLSLSGLLTDKVFEYI 451
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD 185
+E+L ++F + + S SLR L++ + D
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495
Score = 29.5 bits (66), Expect = 3.6
Identities = 36/267 (13%), Positives = 81/267 (30%), Gaps = 21/267 (7%)
Query: 57 ILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALS-K 115
+R + S + LS ELR L + + + ++L LN+SY + +
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307
Query: 116 DTFKGLKELKTLDLSYNK-----ISVINKTAFRDTLHL----ELLILSFNNITYFEDSEI 166
+L+ L + + + L + ++ +T +
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367
Query: 167 FSSLKSLRILKLDNNQI----LDVPNNVLSNLPHQSLHYLYLNENLIET--VLDNSFPF- 219
L + Q+ L N+ L + T LD F
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427
Query: 220 --TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK-LSALVNLD 276
+L L+LS + + E + + L ++ S + + +L L+
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487
Query: 277 LSGNNFSNIDSVAFKSLFSLKLVKINL 303
+ F + ++ + + + +
Sbjct: 488 IRDCPFGD-KALLANASKLETMRSLWM 513
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 37.9 bits (88), Expect = 0.006
Identities = 46/248 (18%), Positives = 80/248 (32%), Gaps = 37/248 (14%)
Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTA-FRDTLHLELLILSFNNITYFEDSEIFSSLK 171
L D L + + + A ++ + LS + I I S
Sbjct: 59 LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118
Query: 172 SLRILKLDNNQILDVPNNVLSNLPH------------------------QSLHYLYLN-- 205
L+ L L+ ++ D N L+ + L L L+
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
Query: 206 ENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL----RTLHSLDLSN-NNLSA 260
+ E + + + L L S + +S TL L LDLS+ L
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNL-SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK-LVKINLIPNL-DSIDQPLSLSL 318
++ +L+ L +L LS +I L + L + + + D Q L +L
Sbjct: 238 DCFQEFFQLNYLQHLSLSRC--YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 295
Query: 319 PPLLLSLS 326
P L ++ S
Sbjct: 296 PHLQINCS 303
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 34.8 bits (80), Expect = 0.035
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK------ISVINKTAFRDTLHLELLI 152
K+ ++ + + I ++ D +GL+ ++ + L + +++ LE+ I
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 153 LSFNNITYFEDS--EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
+S N+T D ++L+ L L + L + + +L
Sbjct: 122 ISCGNVT---DKGIIALHHFRNLKYLFLSD----------LPGVKEKEKIVQAFKTSL 166
Score = 29.4 bits (66), Expect = 2.3
Identities = 7/64 (10%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
+ + + ++D +++ + +I + L + + L I+ + L L+ +
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLENL 112
Query: 300 KINL 303
+ ++
Sbjct: 113 QKSM 116
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 31.1 bits (71), Expect = 0.66
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 22/130 (16%)
Query: 149 ELLILSFNNITYFEDSEIFSSLK---SLRILKLDNNQILDVPNNVLSNL--PHQSLHYLY 203
E+ + + NI +LK ++ + + D L+ + + +L L
Sbjct: 40 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99
Query: 204 LNENLI---------ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL----RTLHS 250
+ N I E + N+ +L L + S + E + TL
Sbjct: 100 VESNFISGSGILALVEALQSNT---SLIELR-IDNQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 251 LDLSNNNLSA 260
Sbjct: 156 FGYHFTQQGP 165
Score = 28.4 bits (64), Expect = 4.9
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 22/128 (17%)
Query: 76 LRSLDLS-VNKINVLGSHNF----EYQNKLLNLNISYNEIS-----ALSKDTFKGLKELK 125
L ++L+ + I V + + +I + AL+ + K LK
Sbjct: 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA-EMLKVNNTLK 96
Query: 126 TLDLSYNKISVINKTAFRDTLH----LELLILSFNNITYFEDS---EIFSSLK---SLRI 175
+L++ N IS A + L L L + N ++ EI + L+ +L
Sbjct: 97 SLNVESNFISGSGILALVEALQSNTSLIELRID-NQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 176 LKLDNNQI 183
Q
Sbjct: 156 FGYHFTQQ 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.3
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 26/51 (50%)
Query: 423 NSLSHLEASHFPLERISFLDL--SDN-PLHCDCNLLWLWILVQLQVKSTME 470
+L L+AS L L D+ P L +K+TME
Sbjct: 20 QALKKLQAS---------LKLYADDSAP--------------ALAIKATME 47
Score = 28.8 bits (63), Expect = 3.0
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 491 EAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPE 530
E Q +K L +LK + L +KA E
Sbjct: 18 EKQA----LKK---LQ---ASLKLYADDSAPALAIKATME 47
>2gno_A DNA polymerase III, gamma subunit-related protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: DNA; 2.00A
{Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Length = 305
Score = 29.7 bits (67), Expect = 2.5
Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 28/202 (13%)
Query: 8 IFLILALTKLNKAICP---SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
+ +L + + + P SR + D +V ++ + + L E
Sbjct: 114 VI-VLNTRRWHY-LLPTIKSRVFRVVVNVPKEFRD----LVKEKIGDLWEELPLLERDFK 167
Query: 65 NVHYTLSFYIELRSLDLSVNKIN-VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGL-- 121
L + L K++ ++ S KLL +S L+
Sbjct: 168 ---------TALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFS 218
Query: 122 -----KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176
+ D N I+ + L +IL N ED + S L S+ +
Sbjct: 219 KVESKEFFALFDQVTNTITGKDAFLLIQRLT--RIILHENTWESVEDQKSVSFLDSILRV 276
Query: 177 KLDNNQILDVPNNVLSNLPHQS 198
K+ N N+L+ +
Sbjct: 277 KIANLNNKLTLMNILAIHRERK 298
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 91
Score = 27.6 bits (61), Expect = 3.2
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
E + + + ++I L D F L L L+ ++++++
Sbjct: 25 ERRALAMKIPFPTDKIVNLPVDDFNEL--LARYPLTESQLALVRD 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.380
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,257,840
Number of extensions: 468511
Number of successful extensions: 6898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 465
Length of query: 608
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 509
Effective length of database: 3,937,614
Effective search space: 2004245526
Effective search space used: 2004245526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)