RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3330
(608 letters)
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 78.3 bits (191), Expect = 1e-16
Identities = 68/265 (25%), Positives = 104/265 (39%), Gaps = 8/265 (3%)
Query: 22 CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELR-S 78
CP C C+++ K+ SC GL+ VP+ + Q I L NRIS+V + L
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
S + + ++ ++ TF GL L TL L + +
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQS 198
FR L+ L L N + D + F L +L L L N+I VP L S
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLH--S 178
Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
L L L++N + V ++F L L TL L +N +S + + LR L L L++N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Query: 259 SAIPTKQLSKLSALVNLDLSGNNFS 283
+ + L S +
Sbjct: 238 VCDC-RARPLWAWLQKFRGSSSEVP 261
Score = 56.0 bits (133), Expect = 3e-09
Identities = 51/218 (23%), Positives = 80/218 (36%), Gaps = 7/218 (3%)
Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305
+ L N +S +P L L L N + ID+ AF L L+ + ++
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 306 NLDSIDQPLSLSLPPL-LLSLSIPLAFSLTPLGTLKCDRL---DLSGNNFSNIDSVAFKS 361
L S+D L L L L L P L L N + F+
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 362 LFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
L +L + L N + S+ +RAF L+ +++++N P +
Sbjct: 152 LGNLT--HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 421 KGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLW 458
N + + PL + +L L+DNP CDC LW
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 74.7 bits (182), Expect = 3e-15
Identities = 72/300 (24%), Positives = 109/300 (36%), Gaps = 54/300 (18%)
Query: 21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
+CP RCQC C+D GLE VP L P+ LD
Sbjct: 3 VCPFRCQC--HLRVVQCSDLGLEKVPKDLPPD-----------------------TALLD 37
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
L NKI + +F+ L L + N+IS +S F L +L+ L LS N++ + +
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97
Query: 141 AFRDTLHLELLILSFNNITYF----------------------EDSEIFSSLKSLRILKL 178
+ L + + ++ F +K L +++
Sbjct: 98 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157
Query: 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN 238
+ I +P + + L L+L+ N I V S L NL L LS N IS ++
Sbjct: 158 ADTNITTIPQGLPPS-----LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVD 211
Query: 239 ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL 298
S L L L+NN L +P + + + L NN S I S F
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270
Score = 60.8 bits (146), Expect = 1e-10
Identities = 59/288 (20%), Positives = 107/288 (37%), Gaps = 21/288 (7%)
Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
LR+++ + + VP ++ + L L N I + D F L NLHTL L +
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDT-----ALLDLQNNKITEIKDGDFK-NLKNLHTLILIN 64
Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291
N IS I+ +F L L L LS N L +P K L L + N + + F
Sbjct: 65 NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFN 121
Query: 292 SLFSLKLVKINLIPNLDSIDQPLSLSLPPLL--LSLSIPLAFSLTPLGTLKCDRLDLSGN 349
L + +V++ P S + + L + ++ ++ L L GN
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181
Query: 350 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF 409
+ +D+ + K L +L + ++ + E + N +
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL---VKVPGGL 238
Query: 410 QGNTNLKSVSLKGNSLSHLEASHFP-------LERISFLDLSDNPLHC 450
+ ++ V L N++S + ++ F S + L NP+
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
Score = 42.7 bits (99), Expect = 7e-05
Identities = 43/214 (20%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305
LDL NN ++ I L L L L N S I AF L L+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER------- 83
Query: 306 NLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSL 365
L LS L L + N + + F L +
Sbjct: 84 -----------------LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126
Query: 366 KLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSL 425
+V++ P S + ++ + I + N+ +P L +L + L GN +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKI 183
Query: 426 SHLEASHFP-LERISFLDLSDNPLHCDCNLLWLW 458
+ ++A+ L ++ L LS N + N
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 71.3 bits (173), Expect = 2e-14
Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 5/211 (2%)
Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307
++ NL+A+P L K L LS N L + ++
Sbjct: 12 HLEVNCDKRNLTALPP-DLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKL 367
L L LS + + L LD+S N +++ A + +L
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGEL 126
Query: 368 VKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
++ L N + + N NL +LP+ L G NL ++ L+ NSL
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 428 LEASHFPLERISFLDLSDNPLHCDCNLLWLW 458
+ F + F L NP C+C +L+
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILYFR 217
Score = 51.6 bits (122), Expect = 8e-08
Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 9/209 (4%)
Query: 25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSV 83
LE +C L +P L + + L EN + TL Y L L+L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 84 NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
++ + +L + + L L LD+S+N+++ + A R
Sbjct: 65 AELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
L+ L L N + + + L L L NN + ++P +L+ L + L L
Sbjct: 122 GLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN--LDTLL 178
Query: 204 LNENLIETVLDNSFPFTLTNLHTLALSSN 232
L EN + T+ F L L N
Sbjct: 179 LQENSLYTIPKGFFG--SHLLPFAFLHGN 205
Score = 50.1 bits (118), Expect = 3e-07
Identities = 40/201 (19%), Positives = 61/201 (30%), Gaps = 12/201 (5%)
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
L +N ++AL D K + L LS N + + L L L +T
Sbjct: 12 HLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ L + + + ++ + T L
Sbjct: 69 KLQVDGTLPVLGT-------LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
L L L L N + + L L L+NNNL+ +P L+ L L L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 280 NNFSNIDSVAF--KSLFSLKL 298
N+ I F L L
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFL 202
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 55.2 bits (131), Expect = 2e-09
Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 6/186 (3%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN--VHYTLSFYIELRSL 79
CP+ C C + CT GL+ +P + ++L +N + L L
Sbjct: 2 CPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
+L N++ + + FE + + L + N+I +S F GL +LKTL+L N+IS +
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
+F L L+ + + + + + LR L+ + + ++ + L
Sbjct: 120 GSFEHLNSLT--SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDL 177
Query: 200 HYLYLN 205
+
Sbjct: 178 PHSEFK 183
Score = 31.3 bits (69), Expect = 0.19
Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 43/196 (21%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK 402
L L+ N I S LVK+ L N + + + + +K
Sbjct: 33 ELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 403 QLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILV 461
++ +K+F G LK+++L N +S + F L ++ L+L+ NP +C+C+L W
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--- 148
Query: 462 QLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIK 521
+ ++ +C +P ++
Sbjct: 149 --------------------------------------EWLRKKSLNGGAARCGAPSKVR 170
Query: 522 GLEVKAVPENSVHCES 537
+++K +P + C S
Sbjct: 171 DVQIKDLPHSEFKCSS 186
Score = 29.8 bits (65), Expect = 0.77
Identities = 27/179 (15%), Positives = 45/179 (25%), Gaps = 6/179 (3%)
Query: 275 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT 334
+D +G I L L L L L L +
Sbjct: 13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 335 PLGTLKCDRLDLSGNNF-SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETV 393
+ G N I + F L LK + + + + +F L ++
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY-DNQISCVMPGSFEHLNSLTSL 131
Query: 394 IINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDC 452
+ N F KS L G + + + + DL + C
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKS--LNGGAARC--GAPSKVRDVQIKDLPHSEFKCSS 186
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 55.4 bits (132), Expect = 9e-09
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
L + L L+++ N++ + T L L LDL+ N+IS +
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL--A 257
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
L L L N I+ ++L + + ++ ++L
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTN-------LELNENQLEDISPISNLKNLT 310
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
YL L N I + S +LT L L ++N +S + SS L ++ L +N +S
Sbjct: 311 YLTLYFNNISDISPVS---SLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD 365
Query: 261 IPTKQLSKLSALVNLDLSGN 280
+ L+ L+ + L L+
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383
Score = 46.9 bits (110), Expect = 4e-06
Identities = 71/375 (18%), Positives = 127/375 (33%), Gaps = 27/375 (7%)
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
+ K NV + + +++ L I ++ D + L L ++ S N+++ I T
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI--T 82
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
++ L ++++ N I ++L L + I + N N S +
Sbjct: 83 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF---------VTLRTLHSL 251
+ L F L++ + S L L SL
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202
Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
+NN +S I + + L L L+GN +I ++A + + + N I NL +
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 260
Query: 312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN 371
L+ L L +++PL L N L +
Sbjct: 261 GLTKLTE----LKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLT 313
Query: 372 LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS 431
L N S D +L+ + N + + S TN+ +S N +S L
Sbjct: 314 LYFNNIS-DISPVSSLTKLQRLFFANN-KVSDVSS--LANLTNINWLSAGHNQISDLTPL 369
Query: 432 HFPLERISFLDLSDN 446
L RI+ L L+D
Sbjct: 370 A-NLTRITQLGLNDQ 383
Score = 41.5 bits (96), Expect = 2e-04
Identities = 67/325 (20%), Positives = 122/325 (37%), Gaps = 45/325 (13%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
+ +L I + EY N L +N S N+++ ++ K L +L + ++ N+I+
Sbjct: 46 VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV----- 190
I A L L + + + L + + L ++
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161
Query: 191 ---------LSNLPHQSLHYLYLNENLIETVLDNSFPFT-----------------LTNL 224
L+NL + N+ +VL LTNL
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221
Query: 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284
L+L+ N + I + +L L LDL+NN +S + LS L+ L L L N SN
Sbjct: 222 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 277
Query: 285 IDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DR 343
I +A + + + N + ++ I +L+ L+L ++P+ +L R
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTY----LTLYFNNISDISPVSSLTKLQR 333
Query: 344 LDLSGNNFSNIDSVA-FKSLFSLKL 367
L + N S++ S+A ++ L
Sbjct: 334 LFFANNKVSDVSSLANLTNINWLSA 358
Score = 35.0 bits (79), Expect = 0.026
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 11 ILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTL 70
L L + + ++ PI + + L N IS++ +
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PV 325
Query: 71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130
S +L+ L + NK++ + S + L+ +N+IS L+ L + L L+
Sbjct: 326 SSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381
Query: 131 YN 132
Sbjct: 382 DQ 383
Score = 31.9 bits (71), Expect = 0.21
Identities = 65/346 (18%), Positives = 115/346 (33%), Gaps = 27/346 (7%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
+ + K +V + + D + L I + L +L + NNQ+
Sbjct: 23 EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLT 79
Query: 185 DVPN----NVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240
D+ L ++ + + T L F L + E
Sbjct: 80 DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139
Query: 241 SFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVK 300
S T+ + +L + Q++ L L NL + + V+ S+ +
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199
Query: 301 INLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL----KCDRLDLSGNNFSNIDS 356
+LI + I L + L LS+ L +GTL LDL+ N SN+
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLN-GNQLKDIGTLASLTNLTDLDLANNQISNLAP 258
Query: 357 VA-FKSLFSLKLVKINL--IPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN- 412
++ L LKL + I L + ++ + + I+ NLK L N
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318
Query: 413 ----------TNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
T L+ + N +S + S L I++L N +
Sbjct: 319 ISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQI 363
Score = 31.5 bits (70), Expect = 0.30
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 219 FTLTNL-HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
FT T L + + + S L + +L + +I + L+ L ++
Sbjct: 16 FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINF 73
Query: 278 SGNNFSNIDSVAFKSLFSLK 297
S N ++I K+L L
Sbjct: 74 SNNQLTDIT--PLKNLTKLV 91
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 52.6 bits (124), Expect = 3e-08
Identities = 38/212 (17%), Positives = 72/212 (33%)
Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
+ L ++ + K F G +L+ +++S N + + + L I
Sbjct: 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90
Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
+ L +N + +V Q + + I T+ NSF
Sbjct: 91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150
Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
L L+ N I I+ +F + NNNL +P S V LD+S
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210
Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
++ S ++L L+ + L +++
Sbjct: 211 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242
Score = 39.5 bits (90), Expect = 7e-04
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
L L+ N I + + F N + L D F G LD+S +I +
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 139 KTAFRDTLHLELLILSFNNITYF 161
+ L S N+
Sbjct: 218 SYGLENLKKLR--ARSTYNLKKL 238
Score = 33.7 bits (75), Expect = 0.044
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 380
LD+S ++ S ++L L+ + L +++
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242
Score = 33.3 bits (74), Expect = 0.057
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
+ + ++ IP+ + L I AF
Sbjct: 9 SNRVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGF 52
Score = 28.3 bits (61), Expect = 2.1
Identities = 35/205 (17%), Positives = 69/205 (33%), Gaps = 6/205 (2%)
Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI-----DSVAFKSLFSLKLVK 300
R L L I S L +++S N+ + S K
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 301 INLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFK 360
NL+ Q L L+ + I + + +L+ LD+ N +
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 361 SLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
S + V + L N + QL+ + +++N NL++LP+ +F G + + +
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208
Query: 421 KGNSLSHLEASHF-PLERISFLDLS 444
+ L + L+++
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTY 233
Score = 26.4 bits (56), Expect = 8.6
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 398 NMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLW 456
+ ++PS L N + L ++ F + +++S N +
Sbjct: 17 ESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73
Query: 457 LW 458
Sbjct: 74 FS 75
Score = 26.4 bits (56), Expect = 9.4
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 379 IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL 428
+ F + I+ + LPS + L++ S +L L
Sbjct: 192 LPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST--YNLKKL 238
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 46.4 bits (108), Expect = 6e-06
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
+L L +S+N + + L L S N+L+ +P L L
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP----ELPQNLKQLH 330
Query: 277 LSGNNFSNIDSVAFKSLFSLKL 298
+ N + +S+ L++
Sbjct: 331 VEYNPLREFPDI-PESVEDLRM 351
Score = 46.4 bits (108), Expect = 6e-06
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 92 HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151
+ F ++L N S + L+ L++S NK+ + R LE L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR----LERL 309
Query: 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLN 205
I SFN++ E+ ++L+ L ++ N + + P+ +S+ L +N
Sbjct: 310 IASFNHLA-----EVPELPQNLKQLHVEYNPLREFPDIP------ESVEDLRMN 352
Score = 44.0 bits (102), Expect = 3e-05
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
+N + + L LN+S N++ L L+ L S+N ++ + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
+L+ L + +N + F D I S++ LR+
Sbjct: 323 PQ----NLKQLHVEYNPLREFPD--IPESVEDLRM 351
Score = 42.9 bits (99), Expect = 8e-05
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255
SL L ++ N + P L L S N ++ + E + L L +
Sbjct: 283 PPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEY 333
Query: 256 NNLSAIPTKQLSKLSALVNLDLS 278
N L P ++ +L ++
Sbjct: 334 NPLREFP----DIPESVEDLRMN 352
Score = 38.7 bits (88), Expect = 0.001
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
N S S +L L++SNN L +P + L L S N+ + + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322
Query: 289 AFKSLFSLKLV--KINLIPNL 307
++L L + + P++
Sbjct: 323 -PQNLKQLHVEYNPLREFPDI 342
Score = 36.3 bits (82), Expect = 0.009
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
L L++S NK+ L + +L L S+N ++ + + + LK L + YN +
Sbjct: 286 LEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLR 337
Query: 136 VI 137
Sbjct: 338 EF 339
Score = 34.8 bits (78), Expect = 0.023
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS 287
R H L+L+N LS++P L +L S N+ + +
Sbjct: 38 RQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPE 75
Score = 31.7 bits (70), Expect = 0.22
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
++ L+L+ +S + + HLE L+ S N++T E+ +SL+ L +DNN
Sbjct: 38 RQAHELELNNLGLSSLPELPP----HLESLVASCNSLT-----ELPELPQSLKSLLVDNN 88
Query: 182 QI 183
+
Sbjct: 89 NL 90
Score = 30.9 bits (68), Expect = 0.44
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 398 NMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWL 457
N+ L LP +L+S+ NSL+ L L+ + + + L LL
Sbjct: 47 NLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 102
Score = 29.8 bits (65), Expect = 0.97
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP 434
+ + LE + ++ N L +LP+ L+ + N L+ +
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNN-KLIELPALP----PRLERLIASFNHLAEVPEL--- 322
Query: 435 LERISFLDLSDNPLHC 450
+ + L + NPL
Sbjct: 323 PQNLKQLHVEYNPLRE 338
Score = 28.6 bits (62), Expect = 2.5
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 173 LRILKLDNNQILDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
LR L++ N LS+LP L L + N + P +L +L +
Sbjct: 32 LRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-----ELPELPQSLKSLLVD 86
Query: 231 SNIISFIN 238
+N + ++
Sbjct: 87 NNNLKALS 94
Score = 27.9 bits (60), Expect = 4.1
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
+ L ++ +S+L + L++L S N ++ + + L+ L++ N
Sbjct: 37 DRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQ----SLKSLLVDNN 88
Query: 157 NITYF 161
N+
Sbjct: 89 NLKAL 93
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 43.2 bits (101), Expect = 1e-05
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
R L L+ + VL + E + +L++S+N + A L+ L+ L S N +
Sbjct: 1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NVLSN 193
++ + L+ L+L N + + S L +L L N + +
Sbjct: 58 VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Query: 194 LPH 196
LP
Sbjct: 116 LPS 118
Score = 39.7 bits (92), Expect = 1e-04
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
R+L L + + + + L L + +L L+ N + L L L S N
Sbjct: 1 RVLHLAHKDLTVLCH--LEQLLL--VTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA 54
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDSV 288
+ + L L L L NN L + L LV L+L GN+ + +
Sbjct: 55 LENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 37.8 bits (87), Expect = 7e-04
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 10/126 (7%)
Query: 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210
L L+ ++T L + L L +N++ +P + +L L + +
Sbjct: 3 LHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPAL------AALRCLEVLQASDN 53
Query: 211 TVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL 269
+ + L L L L +N + V+ L L+L N+L Q
Sbjct: 54 ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113
Query: 270 SALVNL 275
L ++
Sbjct: 114 EMLPSV 119
Score = 26.2 bits (57), Expect = 5.7
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 344 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQ 403
L L+ + + + + L + ++L N A LE + ++N
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVT--HLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 404 LPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPLHCDCNL 454
L+ + L N L A R+ L+L N L + +
Sbjct: 59 DG---VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 43.4 bits (100), Expect = 6e-05
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 223 NLHTLALSSNIISFINESSFVT-LRTLHSLDLSNNNLSAIPTKQLSK----LSALVNLDL 277
++ +L + +S + + L+ + L + L+ K +S AL L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 278 SGNNFSNIDSVAFKSLF---SLKLVKINL 303
N ++ S K+ K++L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 43.0 bits (99), Expect = 9e-05
Identities = 13/94 (13%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL--PHQSLHYL 202
+L ++ L + ++ +E+ L+ ++++LD+ + + +S+ + +L L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 203 YLNENLIE----TVLDNSFPFTLTNLHTLALSSN 232
L N + + + L+L +
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 41.1 bits (94), Expect = 3e-04
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 100 LLNLNISYNEISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTL----HLELLILS 154
+ +L+I E+S + L++ + + L ++ L L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 155 FNNITYFEDSEIFSSLKS----LRILKLDNNQ 182
N + + L++ ++ L L N
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 41.1 bits (94), Expect = 3e-04
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLK---SLRILKL 178
++++LD+ ++S L +++ L +T +I S+L+ +L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 179 DNNQILDVPNNVLSNL---PHQSLHYLYLN 205
+N++ DV + + P + L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
Score = 38.8 bits (88), Expect = 0.002
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSL 170
+ + L+ L L+ +S + ++ TL L L LS N + ++ S+
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 171 KS----LRILKLDNNQILDVPNNVLSNL 194
+ L L L + + + L L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
Score = 38.4 bits (87), Expect = 0.002
Identities = 14/119 (11%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 74 IELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLD 128
++++SLD+ +++ + + + + ++ + L L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 129 LSYNKIS-----VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
L N++ + + + ++ L L +T + S+L++L L+ +
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Score = 38.4 bits (87), Expect = 0.002
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 91 SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLDLSYNKISVINKTAFRDTL 146
+ + L L ++ ++S S T L+ LDLS N + +++
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 147 -----HLELLILSFNNITYFEDSEIFSSLK---SLRIL 176
LE L+L + + + + K SLR++
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 36.9 bits (83), Expect = 0.006
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 222 TNLHTLALSSNIISFINE----SSFVTLRTLHSLDLSNNNLSAIPTKQLSK-----LSAL 272
+ L L L+ +S + ++ + +L LDLSNN L QL + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 273 VNLDLSGNNFSNIDSVAFKSLFSLK 297
L L +S ++L K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 36.5 bits (82), Expect = 0.008
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 11/106 (10%)
Query: 60 ENRISNVHYTLSFYIELRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEIS---- 111
LR L L+ ++ + + L L++S N +
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414
Query: 112 -ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL--HLELLILS 154
L + + L+ L L S + + L ++S
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
Score = 33.4 bits (74), Expect = 0.070
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQ----LSKLSALVNLDLSGNNFSNIDSVAFKSL 293
+ L L L++ ++S L +L LDLS N + +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 294 FSLKLVKINLIPNLDSIDQPLSLSLPPLLLSL 325
+ L D S + L +L
Sbjct: 421 VRQPGCLLE---QLVLYDIYWSEEMEDRLQAL 449
Score = 33.0 bits (73), Expect = 0.10
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNL--PHQSLHYLYLNENLIE----TVLDNSFPFT 220
LR+L L + + D + L+ + SL L L+ N + L S
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
L L L S L +L+ +L I
Sbjct: 425 GCLLEQLVLYDIYWSEE------MEDRLQALEKDKPSLRVI 459
Score = 32.6 bits (72), Expect = 0.15
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 147 HLELLILSFNNITYFEDSEIFSSL---KSLRILKLDNNQILDVPNNVLSNL---PHQSLH 200
L +L L+ +++ S + ++L SLR L L NN + D L P L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 201 YLYLNENLI 209
L L +
Sbjct: 430 QLVLYDIYW 438
Score = 29.9 bits (65), Expect = 0.91
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 45/129 (34%)
Query: 248 LHSLDLSNNNLSAIPTKQL-SKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
+ SLD+ LS +L L + L +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD----------------- 46
Query: 307 LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLF--- 363
++ +L L L+L N ++
Sbjct: 47 ----------------------ISSALRVNPALA--ELNLRSNELGDVGVHCVLQGLQTP 82
Query: 364 SLKLVKINL 372
S K+ K++L
Sbjct: 83 SCKIQKLSL 91
Score = 29.9 bits (65), Expect = 0.94
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 387 NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-----LERISFL 441
++ ++++ I ++L + V L L+ ++ L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 442 DLSDNPL 448
+L N L
Sbjct: 61 NLRSNEL 67
Score = 29.2 bits (63), Expect = 1.5
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 48 QLNPEVQTIILRENRISNVH-----YTLSFYIELRSLDLSVNKINVLGSHNF-----EYQ 97
Q ++ + L + +S+ TL LR LDLS N + G +
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425
Query: 98 NKLLNLNISYNEISALSKDTFKGLKELK 125
L L + S +D + L++ K
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDK 453
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 42.8 bits (99), Expect = 8e-05
Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 8/223 (3%)
Query: 61 NRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKG 120
N + + ++ +L L ++ ++ L+ L+ SYN +S +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 121 LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
L L + N+IS ++ L + N + F++L + N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240
D S+ Q +H + D NL+ L L +N I
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 241 SFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLSGNNF 282
L+ LHSL++S NNL IP Q L + N
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKC 303
Score = 34.7 bits (78), Expect = 0.025
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFS 283
+ LDL NN + + L++L L +L++S NN
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 30.1 bits (66), Expect = 0.84
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC 450
+ N LP L Q L S+++ N+L L+R ++N C
Sbjct: 251 LRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.0 bits (95), Expect = 8e-05
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 8/149 (5%)
Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP 187
+L ++ + K L + D + +L ++
Sbjct: 3 ELKPEQVEQL-KLIMSKRYDGSQQALDLKGLRSDPD---LVAQNIDVVLNRRSSMA-ATL 57
Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPF-TLTNLHTLALSSNIISFINESSFVTLR 246
+ N+P L L L+ N + + D S NL L LS N + E +
Sbjct: 58 RIIEENIP--ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 115
Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNL 275
L L L N+LS Q + +SA+
Sbjct: 116 KLEELWLDGNSLSDTFRDQSTYISAIRER 144
Score = 32.1 bits (72), Expect = 0.10
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALS--KDTFKGLKELKTLDLSYNK 133
L+ + L E +LL+LN+S N + L + LK L+LS N+
Sbjct: 44 DVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 102
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFED------SEIFSSLKSLRILKLDNNQI 183
+ + L LE L L N+++ S I L +LD +++
Sbjct: 103 LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLL--RLDGHEL 156
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.5 bits (91), Expect = 3e-04
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 6/135 (4%)
Query: 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176
+ + LDL KI VI + + S N I + F L+ L+ L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTL 68
Query: 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
++NN+I + + LP L L N + + D +L +L L + N ++
Sbjct: 69 LVNNNRICRIGEGLDQALPDL--TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126
Query: 237 INESSFVTLRTLHSL 251
+ + +
Sbjct: 127 KKHYRLYVIYKVPQV 141
Score = 38.8 bits (89), Expect = 5e-04
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 9/154 (5%)
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
L++ +I + + LDL + I + L +D S N +D
Sbjct: 3 LTAELIE--QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG- 58
Query: 289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSG 348
F L LK + +N + L L+ L L L L
Sbjct: 59 -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS----LKS 113
Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR 382
+ I + +L I +P + +D +
Sbjct: 114 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147
Score = 33.8 bits (76), Expect = 0.023
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
E + +++ R L L +I + N+ + L + ++N I + L
Sbjct: 9 EQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQ--FDAIDFSDNEIRKLDGFP---LL 62
Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGN 280
L TL +++N I I E L L L L+NN+L + L+ L +L L + N
Sbjct: 63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122
Query: 281 NFSNIDSVAFKSLFSLKLVKI 301
+N ++ + V++
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRV 143
Score = 33.8 bits (76), Expect = 0.027
Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 5/126 (3%)
Query: 409 FQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC-----DCNLLWLWILVQL 463
+ + + L+G + +E L++ +D SDN + L ++
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73
Query: 464 QVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGL 523
++ E A + ++ + E +D + + + ++ +
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 524 EVKAVP 529
+ VP
Sbjct: 134 VIYKVP 139
Score = 29.5 bits (65), Expect = 0.68
Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
+ + LR +I + + + ++D S N+I L F +L L ++ N I
Sbjct: 18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 75
Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFED--SEIF 167
+ + + L +L L L+ N + + +L L L + N +T + +
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135
Query: 168 SSLKSLRILKLDNNQILD 185
+ +R+ LD ++
Sbjct: 136 YKVPQVRV--LDFQKVKL 151
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 16/191 (8%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ + N+ ++ T L + + + + I + + ++ L L+ N +
Sbjct: 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL 80
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN--- 215
T + +L L + + + + + + + L+
Sbjct: 81 TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140
Query: 216 -------SFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
LS + L L +L LS N++S + L+
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAG 198
Query: 269 LSALVNLDLSG 279
L L L+L
Sbjct: 199 LKNLDVLELFS 209
Score = 33.8 bits (76), Expect = 0.036
Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 14/187 (7%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
+ ++ K +V + N + + + ++I S + L + L L+ NK++ I
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLTDIK 84
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR---------ILKLDNNQILDVPNN 189
A L L + SL ++ L + L + NN
Sbjct: 85 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144
Query: 190 VLSNLPHQSLHYLYLNENLIETVLDNSFPFT-LTNLHTLALSSNIISFINESSFVTLRTL 248
++++ S +L + + + P LT L L LS N IS + + L+ L
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNL 202
Query: 249 HSLDLSN 255
L+L +
Sbjct: 203 DVLELFS 209
Score = 28.8 bits (63), Expect = 1.6
Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
L ++ + + L ++ + +N+++ ++ + L + L L+GN
Sbjct: 23 FAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN 78
Query: 281 NFSNIDSVAF 290
++I +A
Sbjct: 79 KLTDIKPLAN 88
Score = 26.5 bits (57), Expect = 9.1
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
I D+ + L S+ + +N+ I V + LP ++ L+LN N
Sbjct: 23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLP--NVTKLFLNGN 78
Query: 208 LI 209
+
Sbjct: 79 KL 80
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 37.3 bits (85), Expect = 0.003
Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 17/211 (8%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ + + ++ T L + TL ++ I + +L L L N I
Sbjct: 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
T + + + L + + + + + L
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135
Query: 219 FTLTNLHTLAL----------SSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
L + ++ S + + L L +L +N +S I L+
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193
Query: 269 LSALVNLDLSGNNFSNIDSVA-FKSLFSLKL 298
L L+ + L N S++ +A +LF + L
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224
Score = 36.9 bits (84), Expect = 0.004
Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 16/210 (7%)
Query: 79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
+ ++ K NV + + + L+ ++ + + L L L+L N+I+ +
Sbjct: 22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL----------DVPN 188
+ L + L ++ + L N
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTL 248
+ + P L L V D + L+ L TL N IS I S +L L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNL 197
Query: 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
+ L NN +S + L+ S L + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225
Score = 31.2 bits (69), Expect = 0.29
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
L N +A + + + + L + +L ++ I + L+ L+ L+L N
Sbjct: 18 LANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73
Query: 281 NF 282
Sbjct: 74 QI 75
Score = 28.8 bits (63), Expect = 1.7
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED 163
+S L +L TL NKIS I + +L + L N I+ D
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS---D 209
Query: 164 SEIFSSLKSLRILKLDN 180
++ +L I+ L N
Sbjct: 210 VSPLANTSNLFIVTLTN 226
Score = 28.8 bits (63), Expect = 1.8
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
L + +N++ T + L + L G + I+ V +
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY 61
Score = 27.7 bits (60), Expect = 3.7
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255
L L ++N I + + +L NL + L +N IS + S L + L+N
Sbjct: 172 LSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTN 226
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 37.2 bits (84), Expect = 0.004
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 234 ISFINESSFVTLRTLHSLDLSNNNLS-----AIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
+ ++ S + L +L L N + + T K+ L+ L+L+GN FS D V
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
Query: 289 AFKSLFSLKLVKINLIPNLDSIDQ 312
+ + LD +++
Sbjct: 321 VDEIREVFSTRGRGELDELDDMEE 344
Score = 32.9 bits (73), Expect = 0.089
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 99 KLLNLNISYNEIS-----ALSKDTFKGLKELKTLDLSYNKIS 135
L L + YNEI L + + +L L+L+ N+ S
Sbjct: 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
Score = 32.9 bits (73), Expect = 0.11
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 92 HNFEYQNKLLNLNISYNEISALSKD-TFKGLKELKTLDLSYNKISVINKTAFRDTL---- 146
+ L + +S +A+ + L+TL L YN+I + + +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301
Query: 147 -HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
L L L+ N + E+ ++ ++ + +
Sbjct: 302 PDLLFLELNGNRFS--EEDDVVDEIREVFSTRGRGE 335
Score = 31.4 bits (69), Expect = 0.31
Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 7/171 (4%)
Query: 94 FEYQNKLLNLN-ISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL----HL 148
F + K L L+ I+ + ++ +K + LS N I + + L
Sbjct: 3 FSIEGKSLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61
Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
E+ S +D EI +L+ L L ++ V + + P +
Sbjct: 62 EIAEFSDIFTGRVKD-EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259
L ++ + L S+ N L
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 171
Score = 31.0 bits (68), Expect = 0.43
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS-----FINESSFVTLRTLHS 250
L+ L+ V+D L TL L N I + + L
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
L+L+ N S + ++ + + G
Sbjct: 307 LELNGNRFSEED-DVVDEIREVFSTRGRGE 335
Score = 30.6 bits (67), Expect = 0.54
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEI----FSSLKSLRILKLDNNQILDVPNN 189
+V++ + + + L+ L L +N I + + L L+L+ N+ + +
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
Query: 190 V 190
V
Sbjct: 321 V 321
Score = 29.8 bits (65), Expect = 0.89
Identities = 7/68 (10%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQ----LSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
+ + ++ + LS N + + ++ L + S + ++L
Sbjct: 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 84
Query: 296 LKLVKINL 303
L +
Sbjct: 85 LLQALLKC 92
Score = 27.9 bits (60), Expect = 3.6
Identities = 35/321 (10%), Positives = 86/321 (26%), Gaps = 13/321 (4%)
Query: 146 LHLELLILSFNNITYFEDSEIFSSLK---SLRILKLDNNQILDVPNNVLSNL--PHQSLH 200
+E L + IT ++ +F+ L S++ + L N I LS + L
Sbjct: 3 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62
Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
++ V D L L + + + L + +
Sbjct: 63 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122
Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPP 320
+ L +V K ++I + ++
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKK--AKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 321 LLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 380
S + + G L + + L + ++
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240
Query: 381 QRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP------ 434
+ + L +++ + + N L+++ L+ N +
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300
Query: 435 LERISFLDLSDNPLHCDCNLL 455
+ + FL+L+ N + +++
Sbjct: 301 MPDLLFLELNGNRFSEEDDVV 321
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 35.9 bits (81), Expect = 0.005
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 2/125 (1%)
Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK 402
L + + + +L + I +L ++ R +L + I ++ +
Sbjct: 12 GLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-R 69
Query: 403 QLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQ 462
+ F L ++L N+L L + L LS NPLHC C L WL +
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129
Query: 463 LQVKS 467
+
Sbjct: 130 EGLGG 134
Score = 30.5 bits (67), Expect = 0.34
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 5/142 (3%)
Query: 22 CPSRCQCFDQKLEASCTDAGLEVVP--IQLNPEVQTIILRENR-ISNVH-YTLSFYIELR 77
CP C CT G + + + + + + ++ L ELR
Sbjct: 1 CPDACCP-HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR 59
Query: 78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137
+L + + + + F + +L LN+S+N + +LS T +GL + +
Sbjct: 60 NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119
Query: 138 NKTAFRDTLHLELLILSFNNIT 159
+ L + +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQ 141
Score = 28.6 bits (62), Expect = 1.3
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 5/135 (3%)
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
L+ + LD ++ L + + Y+ ++L L+ L L L
Sbjct: 6 CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLT 62
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFS-NIDS 287
+ + + F+ +F L L+LS N L ++ + + +L L LSGN +
Sbjct: 63 IVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLSLQELVLSGNPLHCSCAL 121
Query: 288 VAFKSLFSLKLVKIN 302
+ L +
Sbjct: 122 RWLQRWEEEGLGGVP 136
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 32.3 bits (72), Expect = 0.11
Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 16/187 (8%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ + + ++ + L ++ TL I I +L + S N +
Sbjct: 19 EKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 74
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
T + + L + + I + N + + + L N
Sbjct: 75 TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134
Query: 219 FTLTNLHTLALSSNII----------SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
+ + ++ S + + L TL LD+S+N +S I L+K
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 192
Query: 269 LSALVNL 275
L+ L +L
Sbjct: 193 LTNLESL 199
Score = 29.6 bits (65), Expect = 0.72
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 16/189 (8%)
Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI--- 175
L E L ++ + + D + L I + E ++L +
Sbjct: 15 TALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 72
Query: 176 -------LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
LK + + NN + L + +
Sbjct: 73 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132
Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
L + + + S+ L +L L+ S+N ++ + L+ L+ L LD+S N S+I
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS-- 188
Query: 289 AFKSLFSLK 297
L +L+
Sbjct: 189 VLAKLTNLE 197
Score = 28.1 bits (61), Expect = 2.8
Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 14/181 (7%)
Query: 81 LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-------- 132
+ K NV + + +++ L I ++ D + L L ++ S N
Sbjct: 23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPL 80
Query: 133 -KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191
++ + + ++ L+ + L N L++ +N +
Sbjct: 81 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 140
Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFT-LTNLHTLALSSNIISFINESSFVTLRTLHS 250
S++ S N + + P LT L L +SSN +S I S L L S
Sbjct: 141 SDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLES 198
Query: 251 L 251
L
Sbjct: 199 L 199
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 31.2 bits (69), Expect = 0.28
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
+ + + + F ++ + LS + I I S L+ L L+
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81
Query: 182 QILDVPNNVLSNLPH 196
++ D N L+ +
Sbjct: 82 RLSDPIVNTLAKNSN 96
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.0 bits (58), Expect = 6.4
Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 23/178 (12%)
Query: 99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
+ + L+ I + T LK K L LS N I I ++ +L +L L N I
Sbjct: 26 EKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLI 82
Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
E+ L ++ + + ++ +L LY++ N I +
Sbjct: 83 KKIEN------LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136
Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
L L L L+ N L++ NN S + + +L L LD
Sbjct: 137 AALDKLEDLLLAGN--------------PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp.
[TaxId: 479]}
Length = 262
Score = 26.5 bits (58), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
+ +N + ++ +I S L L+ L LD + I+DV
Sbjct: 48 LKKYNTNAFPQEKDISSKL--LKALNLDLDNIIDV 80
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 27.0 bits (59), Expect = 8.9
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)
Query: 38 TDAGLEVVPIQLNPEVQ-----TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGS- 91
TD V Q++P + S Y + F + + L+ + + S
Sbjct: 59 TDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSK 118
Query: 92 --HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAF 142
H N LL N + + +D G +L + ++
Sbjct: 119 PEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGL 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.380
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,004,522
Number of extensions: 88358
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 170
Length of query: 608
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 517
Effective length of database: 1,158,166
Effective search space: 598771822
Effective search space used: 598771822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)