RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3331
(214 letters)
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 187 bits (478), Expect = 2e-59
Identities = 62/101 (61%), Positives = 77/101 (76%)
Query: 98 GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
G CDL+WSDP ++E W +SPRGAG+LFG V EF H N L LICRAHQLV EGY++MF
Sbjct: 185 GPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMF 244
Query: 158 DGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 198
D LVT+WSAPNYCYRCGN+ASI++ + R+ +F+A P
Sbjct: 245 DDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285
Score = 71.9 bits (177), Expect = 4e-15
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 55/116 (47%)
Query: 5 LDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLETLC 64
LD+W+E ++C+ LPE+E+KS LC
Sbjct: 2 LDKWIEQLKKCELLPESEVKS-------------------------------------LC 24
Query: 65 DFVCSILNEESNVQHVSTPVTVCGDIHGQ------------------YIYMGAFCD 102
+ IL +ESNVQ V +PVTVCGDIHGQ Y+++G + D
Sbjct: 25 EKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVD 80
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 187 bits (477), Expect = 4e-59
Identities = 75/118 (63%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Query: 98 GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
G FCDL+WSDP EVE W V+ RGAG+LFGAKVT EF +N L LICRAHQLV EGYKY F
Sbjct: 186 GPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWF 245
Query: 158 -DGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEERVIPDRVITPYFL 214
D NLVT+WSAPNYCYRCGNIASIL + +T F+ VP + I + + PYFL
Sbjct: 246 PDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESAKSINPKNVLPYFL 303
Score = 56.0 bits (135), Expect = 2e-09
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 18/63 (28%)
Query: 58 RSLETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQ------------------YIYMGA 99
R L+ +C+ I EESNVQ V PV VCGDIHGQ YI++G
Sbjct: 19 RDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGD 78
Query: 100 FCD 102
F D
Sbjct: 79 FVD 81
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 122 bits (308), Expect = 3e-34
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 98 GAFCDLVWSDPA-EVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 156
G DL+WSDP V + S RGA ++FG EF+ N+LKLI RAHQ+V +GY++
Sbjct: 170 GLLIDLLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFF 229
Query: 157 FDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 198
DG LVTI+SAPNYC R GN A++LK + T F+
Sbjct: 230 ADGKLVTIFSAPNYCDRFGNKAAVLKVDKDLKLTFEQFKPGK 271
Score = 52.2 bits (126), Expect = 3e-08
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 63 LCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
L V I +E N+ VS PVTVCGDIHGQ+
Sbjct: 9 LLREVKEIFRQEPNLVEVSAPVTVCGDIHGQF 40
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 90.9 bits (226), Expect = 4e-22
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 97 MGAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKY 155
G CDL+WSDP +V+ W + RG + FG V +F++ + L LICRAHQ+V +GY++
Sbjct: 191 QGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEF 250
Query: 156 MFDGNLVTIWSAPNYC 171
LVT++SAPNYC
Sbjct: 251 FAKRQLVTLFSAPNYC 266
Score = 32.3 bits (74), Expect = 0.12
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 63 LCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
LC I + + + P+ +CGDIHGQY
Sbjct: 31 LCLKSREIFLSQPILLELEAPLKICGDIHGQY 62
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 91.2 bits (227), Expect = 6e-22
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 98 GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
G C+L+WSDP + S RG G FG VT F+ N+L+ I R+H++ EGY+
Sbjct: 204 GLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEH 263
Query: 158 DGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPAL--FQAVP 198
DG +T++SAPNYC + GN + ++ + P F+AVP
Sbjct: 264 DGKCITVFSAPNYCDQMGNKGAFIRITG-SDLKPKFTQFEAVP 305
Score = 33.4 bits (77), Expect = 0.066
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 69 SILNEESNVQHVSTP----VTVCGDIHGQY 94
+L + ++ ++ P +TVCGD HGQ+
Sbjct: 43 ELLKKLPSLVEITIPEGEKITVCGDTHGQF 72
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 84.3 bits (208), Expect = 2e-19
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 98 GAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 156
G CDL+WSDP +V+ W + RG ++F ++ F+ + L LICRAHQ+V +GY++
Sbjct: 201 GLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFF 260
Query: 157 FDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEER 202
LVT++SAPNYC N S++ ++D FQ + E+
Sbjct: 261 SKRQLVTLFSAPNYCGEFDNAGSMM---TIDESLMCSFQILKPAEQ 303
Score = 30.8 bits (69), Expect = 0.55
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 54 NIVHRSLETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
N+ + LC I + + + P+ +CGD+HGQY
Sbjct: 31 NLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQY 71
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 81.9 bits (202), Expect = 1e-18
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 98 GAFCDLVWSDPA-EVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 156
G CDL+W+DP EV + S RG +LFG + ++F+ + + LI RAHQ++ GY +
Sbjct: 194 GILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFF 253
Query: 157 FDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 198
LVT++SAPNYC N A+++ ++D++ F +P
Sbjct: 254 ASRQLVTVFSAPNYCGEFDNDAAVM---NIDDKLQCSFLIIP 292
Score = 30.3 bits (68), Expect = 0.67
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 80 VSTPVTVCGDIHGQY 94
+ PV VCGD HGQY
Sbjct: 50 IRPPVRVCGDTHGQY 64
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 77.1 bits (190), Expect = 2e-17
Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 98 GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
DL+WSDP E+ S R G G F+ N LKLI R H V EGY++
Sbjct: 143 QLPEDLLWSDPLELPGGFGSSRRGG---GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGH 199
Query: 158 DGNLVTIWSAPNYCYRCGNIASILKF 183
DGNL+TI S NYC GN + L
Sbjct: 200 DGNLITIDSGCNYCGGGGNKLAALVL 225
Score = 27.0 bits (60), Expect = 7.5
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 85 TVCGDIHGQY 94
V GDIHG
Sbjct: 1 YVIGDIHGCL 10
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 69.3 bits (170), Expect = 4e-14
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 98 GAFCDLVWSDPAE--VETWTV------SPRGAGWLFGAKVTHEFIHINHLKLICRAHQLV 149
G CDL+WSDP E T + RG + + + EF+ N+L I RAH+
Sbjct: 185 GPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQ 244
Query: 150 HEGYK-YMFDGN-----LVTIWSAPNYCYRCGNIASILKFN 184
GY+ Y L+TI+SAPNY N A++LK+
Sbjct: 245 DAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYE 285
Score = 44.6 bits (106), Expect = 1e-05
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 69 SILNEESNVQHVSTPVTVCGDIHGQY 94
IL +E N+ + PVTVCGDIHGQ+
Sbjct: 30 EILRQEPNLLRIEAPVTVCGDIHGQF 55
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 67.8 bits (166), Expect = 1e-13
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 102 DLVWSDPAE------VETWTVSPRGAGWL--FGAKVTHEFIHINHLKLICRAHQLVHEGY 153
DL+WSDP E + + PRG G + FG H F+ N L++I RAH+ V +G+
Sbjct: 209 DLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGF 268
Query: 154 KYMFDGNLVTIWSAPNYCYRCGNIASIL 181
+ G L+T++SA NYC GN +IL
Sbjct: 269 ERFAQGKLITLFSATNYCGTAGNAGAIL 296
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 63 LCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
LCD I +E V + P+ + GDIHGQ+
Sbjct: 29 LCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQF 60
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 64.7 bits (158), Expect = 2e-12
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 102 DLVWSDPAEVE-TWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGN 160
D++WSDP + + RG G FG VT + + + L L+ R+H+ EGY++ +
Sbjct: 227 DILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNK 286
Query: 161 LVTIWSAPNYCYRCG-NIASILKFNSVDNRTPALFQ 195
++TI+SA NY Y G N + +K + TP Q
Sbjct: 287 VITIFSASNY-YEEGSNRGAYIKLGP--DLTPHFVQ 319
Score = 32.0 bits (73), Expect = 0.18
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 70 ILNEESNVQHVST----PVTVCGDIHGQ 93
+L + N+ VST VT+CGD+HG+
Sbjct: 35 VLKQLPNISRVSTSISKQVTICGDLHGK 62
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 60.4 bits (146), Expect = 1e-11
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 98 GAFCDLVWSDPAEVET--WTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKY 155
G DL+WSDP + W PRG G F ++ KLI RAH L
Sbjct: 80 GHTHDLLWSDPDGGDRRIWNPGPRGVPRDGGDVTAV-FGIVHTPKLIERAHVLYDIDTGA 138
Query: 156 MFDGNLVTIWSAPNYCY 172
+F G L+T +SAPNYCY
Sbjct: 139 VFGGGLLTAFSAPNYCY 155
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 53.7 bits (129), Expect = 1e-08
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 20/87 (22%)
Query: 102 DLVWSDPAEVETWTVSP---RGAGWLFGAKVTHEFIHINHLKLICRAHQ----------- 147
D++WSDP+ T +SP RG G L+G T EF+ N+LKLI R+H+
Sbjct: 247 DVLWSDPSL--TPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGL 304
Query: 148 -LVHEGYKYMFD---GNLVTIWSAPNY 170
+++GY D G L+T++SAP+Y
Sbjct: 305 AGMNKGYTVDHDVESGKLITLFSAPDY 331
Score = 28.6 bits (64), Expect = 2.7
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 58 RSLETLCDFVCSILNEESNVQHV----STPVTVCGDIHGQY 94
++L IL+ E N + V V GD+HGQ
Sbjct: 38 NVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQL 78
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 30.6 bits (69), Expect = 0.17
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 134 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAP 168
+HI H KLICRA + + + D V +W P
Sbjct: 11 LHIGHAKLICRAKGIADQCVVRIDDNPPVKVWQDP 45
>gnl|CDD|173885 cd08520, PBP2_NikA_DppA_OppA_like_21, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 468
Score = 28.8 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 94 YIYMGAFCD-LVWSD-----PAEVETWTVSPRGAGWLF 125
Y+ M D LVW D P E+W VS G + F
Sbjct: 26 YVKMSLIFDSLVWKDEKGFIPWLAESWEVSEDGLTYTF 63
>gnl|CDD|148668 pfam07199, DUF1411, Protein of unknown function (DUF1411). This
family represents a conserved region approximately 150
residues long that is sometimes repeated within some
Babesia bovis proteins of unknown function.
Length = 188
Score = 27.5 bits (61), Expect = 4.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 95 IYMGAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEF 133
+ + AF VW+D AEV V + G F V ++
Sbjct: 25 VVLSAFSGNVWADEAEVPQEPVEKKKEGGCFSWSVKEDY 63
>gnl|CDD|239740 cd03771, MATH_Meprin, Meprin family, MATH domain; Meprins are
multidomain, highly glycosylated extracellular
metalloproteases, which are either anchored to the
membrane or secreted into extracellular spaces. They are
expressed in renal and intestinal brush border
membranes, leukocytes, and cancer cells, and are capable
of cleaving growth factors, cytokines, extracellular
matrix proteins, and biologically active peptides.
Meprin proteases are composed of two related subunits,
alpha and beta, which form homo- or hetro-complexes
where the basic unit is a disulfide-linked dimer.
Despite their similarity, the two subunits differ in
their ability to self-associate, in proteolytic
processing during biosynthesis and in substrate
specificity. Both subunits are synthesized as membrane
spanning proteins, however, the alpha subunit is cleaved
during biosynthesis and loses its transmembrane domain.
Meprin beta forms homodimers or heterotetramers while
meprin alpha oligomerizes into large complexes
containing 10-100 subunits. Both alpha and beta subunits
contain a catalytic astacin (M12 family) protease domain
followed by the adhesion or interaction domains MAM,
MATH and AM. The MATH and MAM domains provide
symmetrical intersubunit disulfide bonds necessary for
the dimerization of meprin subunits. The MATH domain may
also be required for folding of an activable zymogen.
Length = 167
Score = 27.4 bits (61), Expect = 5.0
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 102 DLVWSDPAEVETWTVSP------RGAGWLFGAKVTHEFIH 135
+ W P++V ++ RG G+ + ++H +
Sbjct: 111 EYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR 150
>gnl|CDD|236132 PRK07922, PRK07922, N-acetylglutamate synthase; Validated.
Length = 169
Score = 26.8 bits (60), Expect = 6.1
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 87 CGDIHGQYIYMGAFCDLVWSDPAEVETWTVSP--RGAG 122
CG +H ++W D AE+ T V P RG G
Sbjct: 60 CGALH-----------VMWEDLAEIRTVAVDPAARGRG 86
>gnl|CDD|190389 pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA). In
methanobacteria (2R)-phospho-3-sulfolactate synthase
(ComA) catalyzes the first step of the biosynthesis of
coenzyme M from phosphoenolpyruvate (P-enolpyruvate).
This novel enzyme catalyzes the stereospecific Michael
addition of sulfite to P-enolpyruvate, forming
L-2-phospho-3-sulfolactate (PSL). It is suggested that
the ComA-catalyzed reaction is analogous to those
reactions catalyzed by beta-elimination enzymes that
proceed through an enolate intermediate.
Length = 245
Score = 26.8 bits (60), Expect = 9.6
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 43 ILNFPPHVKLDNIVHR---SLETL 63
I F P+V L NI +LETL
Sbjct: 215 IKRFGPNVNLGNIPPSEVLALETL 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.451
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,967,891
Number of extensions: 969614
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 41
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)