RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3331
         (214 letters)



>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
           subunit alpha isoform; protein-protein complex, heat
           repeat, signaling protein; HET: OKA; 2.60A {Homo
           sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
           3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
           2nyl_C*
          Length = 309

 Score =  196 bits (501), Expect = 7e-63
 Identities = 55/117 (47%), Positives = 70/117 (59%)

Query: 98  GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
           G  CDL+WSDP +   W +SPRGAG+ FG  ++  F H N L L+ RAHQLV EGY +  
Sbjct: 193 GPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCH 252

Query: 158 DGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEERVIPDRVITPYFL 214
           D N+VTI+SAPNYCYRCGN A+I++ +     +   F   P        R    YFL
Sbjct: 253 DRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 309



 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 37/93 (39%)

Query: 2  SHKLDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLE 61
          + +LD+W+E   +CK L E+++KS                                    
Sbjct: 7  TKELDQWIEQLNECKQLSESQVKS------------------------------------ 30

Query: 62 TLCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
           LC+    IL +ESNVQ V  PVTVCGD+HGQ+
Sbjct: 31 -LCEKAKEILTKESNVQEVRCPVTVCGDVHGQF 62


>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
           drug design, cytoplasm, hydrolase, iron, manganese,
           metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
           PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
           3h68_A* 3h69_A* 1s95_A
          Length = 315

 Score =  175 bits (447), Expect = 1e-54
 Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 98  GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
           G  CDL+WSDP      ++S RG    FG  VT  F+  N+L  I R+H++  EGY+   
Sbjct: 204 GPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAH 263

Query: 158 DGNLVTIWSAPNYCYRCGNIASILKF-NSVDNRTPALFQAVP 198
            G  VT++SAPNYC + GN AS +    S        F AVP
Sbjct: 264 GGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 305



 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 41/94 (43%)

Query: 5  LDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLETLC 64
          + E ++  +  K L                                            + 
Sbjct: 16 MKELMQWYKDQKKLHRKCAYQ-------------------------------------IL 38

Query: 65 DFVCSILNEESNVQHVST----PVTVCGDIHGQY 94
            V  +L++ S +   +      +TVCGD HGQ+
Sbjct: 39 VQVKEVLSKLSTLVETTLKETEKITVCGDTHGQF 72


>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
           interactions, TPR, super-helix,; 2.9A {Homo sapiens}
           SCOP: a.118.8.1 d.159.1.3
          Length = 477

 Score =  176 bits (449), Expect = 3e-53
 Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 98  GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
           G  CDL+WSDP      ++S RG    FG  VT  F+  N+L  I R+H++  EGY+   
Sbjct: 357 GPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAH 416

Query: 158 DGNLVTIWSAPNYCYRCGNIASILKF-NSVDNRTPALFQAVP 198
            G  VT++SAPNYC + GN AS +    S        F AVP
Sbjct: 417 GGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 458



 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 41/94 (43%)

Query: 5   LDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLETLC 64
           + E ++  +  K L                                            + 
Sbjct: 169 MKELMQWYKDQKKLHRKCAYQ-------------------------------------IL 191

Query: 65  DFVCSILNEESNVQHVS----TPVTVCGDIHGQY 94
             V  +L++ S +   +      +TVCGD HGQ+
Sbjct: 192 VQVKEVLSKLSTLVETTLKETEKITVCGDTHGQF 225


>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
           toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
           2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
          Length = 330

 Score =  172 bits (437), Expect = 6e-53
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 98  GAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 156
           G  CDL+WSDP  +V+ W  + RG  + FGA+V  +F+H + L LICRAHQ+V +GY++ 
Sbjct: 199 GLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFF 258

Query: 157 FDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEERVIPDRVITP 211
               LVT++SAPNYC    N  +++  +     +  + +     +          
Sbjct: 259 AKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYGQFSGLN 313



 Score = 61.9 bits (151), Expect = 9e-12
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 60 LETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
          +  LC     I   +  +  +  P+ +CGDIHGQY
Sbjct: 35 IRGLCLKSREIFLSQPILLELEAPLKICGDIHGQY 69


>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
           structural genomics, PSI-2, protein structu initiative;
           2.30A {Saccharomyces cerevisiae}
          Length = 335

 Score =  171 bits (436), Expect = 1e-52
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 98  GAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMF 157
           GAF +L+W+DP E      S RG G  FG  +T  F+  N L+ I R+H+L   G ++  
Sbjct: 208 GAFMELLWADPQEANGMGPSQRGLGHAFGPDITDRFLRNNKLRKIFRSHELRMGGVQFEQ 267

Query: 158 DGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPAL-----------FQAVP 198
            G L+T++SAPNYC   GN+  ++          A            F+AV 
Sbjct: 268 KGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLIIETFEAVE 319



 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 63 LCDFVCSILNEESNVQHVST------PVTVCGDIHGQY 94
          +     ++  +E ++  +         ++VCGD HGQ+
Sbjct: 39 IISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQF 76


>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
           carbohydrate metabolism, cell cycle, cell division; HET:
           1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
           3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
           2o8a_A 1u32_A* 1s70_A*
          Length = 299

 Score =  164 bits (418), Expect = 2e-50
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 98  GAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 156
           G  CDL+WSDP  +V+ W  + RG  + FGA+V  +F+H + L LICRAHQ+V +GY++ 
Sbjct: 198 GLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFF 257

Query: 157 FDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQA 196
               LVT++SAPNYC    N  +++  +     +  + + 
Sbjct: 258 AKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 297



 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 60 LETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
          +  LC     I   +  +  +  P+ +CGDIHGQY
Sbjct: 34 IRGLCLKSREIFLSQPILLELEAPLKICGDIHGQY 68


>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
           immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
          Length = 521

 Score =  160 bits (407), Expect = 6e-47
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 98  GAFCDLVWSDPAEVETW--------TVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLV 149
           G  CD++WSDP E              + RG  + +      EF+  N+L  I RAH+  
Sbjct: 225 GPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQ 284

Query: 150 HEGYKYMFDG------NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 198
             GY+           +L+TI+SAPNY     N A++LK+ + +      F   P
Sbjct: 285 DAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN-NVMNIRQFNCSP 338



 Score = 64.1 bits (156), Expect = 3e-12
 Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 37/90 (41%)

Query: 5  LDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLETLC 64
          +D       +   L E+                                         + 
Sbjct: 43 VDILKAHLMKEGRLEESVALR-------------------------------------II 65

Query: 65 DFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
              SIL +E N+  +  PVTVCGDIHGQ+
Sbjct: 66 TEGASILRQEKNLLDIDAPVTVCGDIHGQF 95


>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
           protein-peptide docking, protein targeting, AKA
           beta-augmentation, calmodulin-binding, membrane,
           hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
           1tco_A* 1mf8_A* 2jog_A
          Length = 357

 Score =  157 bits (398), Expect = 7e-47
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 98  GAFCDLVWSDPAEVETW--------TVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLV 149
           G  CD++WSDP E              + RG  + +      EF+  N+L  I RAH+  
Sbjct: 212 GPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQ 271

Query: 150 HEGYKYMFDG------NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 198
             GY+           +L+TI+SAPNY     N A++LK+ + +      F   P
Sbjct: 272 DAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN-NVMNIRQFNCSP 325



 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 37/90 (41%)

Query: 5  LDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLETLC 64
          +D       +   L E+                                         + 
Sbjct: 30 VDILKAHLMKEGRLEESVALR-------------------------------------II 52

Query: 65 DFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
              SIL +E N+  +  PVTVCGDIHGQ+
Sbjct: 53 TEGASILRQEKNLLDIDAPVTVCGDIHGQF 82


>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
           synthase, drug complex, tetrahydrolipstatin,
           transferase; HET: DH9; 2.30A {Homo sapiens}
          Length = 316

 Score = 33.7 bits (77), Expect = 0.032
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 115 TVSPRG----AGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 170
            V P G    AG+ +GA V  E              QL  +        +L     +P Y
Sbjct: 100 QVQPEGPYRVAGYSYGACVAFEM-----------CSQLQAQQSPAPTHNSLFLFDGSPTY 148


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.7 bits (76), Expect = 0.044
 Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 54/195 (27%)

Query: 5   LDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFP------PHV---KLDNI 55
           L ++++   Q   LP   L +           ++    I +         HV   KL  I
Sbjct: 307 LLKYLDCRPQD--LPREVLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 56  VHRSLETLCD------FV-CSILNEESNVQHVSTPVTVCGDIHGQYIYMGAFCDLVWSD- 107
           +  SL  L        F   S+    +++      + +                L+W D 
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHI----PTILLS---------------LIWFDV 399

Query: 108 -PAEVETWTVSPRGAGWLFG-AKVTHEFIHINHLKLICRA------HQLVHEGYKYM--F 157
             ++V            +    K +   I   +L+L  +       H+ + + Y     F
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 158 DGNLVTIWSAPNYCY 172
           D + +       Y Y
Sbjct: 460 DSDDLIPPYLDQYFY 474


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.11
 Identities = 39/217 (17%), Positives = 58/217 (26%), Gaps = 88/217 (40%)

Query: 14  QCKYLPENEL----------------KSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVH 57
           +  YL  N++                K+K+ +K   Y TA    K               
Sbjct: 92  ENCYLEGNDIHALAAKLLQENDTTLVKTKELIK--NYITARIMAKRPFDKKSN------- 142

Query: 58  RSLETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQ-----Y------IY------MGAF 100
                      S L       +    V + G   GQ     Y      +Y      +G  
Sbjct: 143 -----------SALFRAVGEGNAQL-VAIFG---GQGNTDDYFEELRDLYQTYHVLVGDL 187

Query: 101 CD--------LVWSDPAEVETWTVSPRG---AGWLFGAKVTHEFIHINH----LKLICRA 145
                     L+     + E   V  +G     WL     T +  ++        LI   
Sbjct: 188 IKFSAETLSELI-RTTLDAE--KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-V 243

Query: 146 HQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILK 182
            QL H    Y+     VT   A    +  G + S LK
Sbjct: 244 IQLAH----YV-----VT---AKLLGFTPGELRSYLK 268



 Score = 29.6 bits (66), Expect = 0.79
 Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 59/167 (35%)

Query: 11  IAQQCKYLPENE-----LK--SKKFVKGG---TYY---TALAKMKILNFPPHV------- 50
           + +   +LP  +     L   +K  V  G   + Y     L K K    P  +       
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA---PSGLDQSRIPF 409

Query: 51  ---KLDNIVHRSLETLCDFVCSIL--------------NEESNVQHVSTPV--TVCG-DI 90
              KL    +R L     F   +L              N   N + +  PV  T  G D+
Sbjct: 410 SERKL-KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468

Query: 91  --HGQYIYMGAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTH--EF 133
                 I      D +   P +   W  + +        K TH  +F
Sbjct: 469 RVLSGSI-SERIVDCIIRLPVK---WETTTQ-------FKATHILDF 504


>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
           hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
           {Homo sapiens} PDB: 1xkt_A
          Length = 283

 Score = 31.0 bits (70), Expect = 0.27
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 115 TVSPRG----AGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 170
            V P G    AG+ +GA V  E              QL  +        +L     +P Y
Sbjct: 78  QVQPEGPYRVAGYSYGACVAFEM-----------CSQLQAQQSPAPTHNSLFLFDGSPTY 126


>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
           formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
           ATG10, ATG3, UBL activation, thiolation; 1.91A
           {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
          Length = 340

 Score = 29.6 bits (67), Expect = 0.74
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 141 LICRAHQ--LVH-----EGYKYMFDGNLVTIWSAPNYCYRC 174
           L+       +++     + Y  M  GN     S    CY C
Sbjct: 158 LLSNIENKTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFC 198


>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
           binding, metal binding protein; 3.00A {Saccharomyces
           cerevisiae} PDB: 3vh2_A
          Length = 598

 Score = 28.6 bits (64), Expect = 1.4
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 141 LICRAHQ--LVH-----EGYKYMFDGNLVTIWSAPNYCYRC 174
           L+       +++     + Y  M  GN     S    CY C
Sbjct: 451 LLSNIENKTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFC 491


>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural
           genomics, joint center for structural JCSG; 2.97A
           {Corynebacterium glutamicum}
          Length = 369

 Score = 28.7 bits (65), Expect = 1.5
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 1   MSHKLDEWVEIAQ 13
            +HK DE   + Q
Sbjct: 343 FAHKRDEQCPVEQ 355


>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
           riken structur genomics/proteomics initiative, RSGI,
           NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
          Length = 311

 Score = 27.1 bits (61), Expect = 4.9
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 9/42 (21%)

Query: 36  TALAK------MKILNFPPHVKLDNIVHRSLETL---CDFVC 68
            A+AK      M+++      K       SLE L    D V 
Sbjct: 157 QAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVS 198


>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
           peptidase, peptidase family M20 structural genomics;
           2.31A {Bacteroides thetaiotaomicron vpi-5482}
          Length = 356

 Score = 26.4 bits (59), Expect = 8.2
 Identities = 3/13 (23%), Positives = 8/13 (61%)

Query: 1   MSHKLDEWVEIAQ 13
            SH  +E++ + +
Sbjct: 327 RSHTAEEYIMLKE 339


>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
           ATP-binding, UBL conjugation pathway, transfer
           structural genomics consortium, SGC; HET: ATP; 2.00A
           {Homo sapiens} PDB: 3guc_A*
          Length = 292

 Score = 26.1 bits (58), Expect = 9.7
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 143 CRAHQ--LVHEG-YKYMFDGNLVTIWSAPNYCYRC 174
           C       +  G  +    G++  I    + C+ C
Sbjct: 158 CNELGQTWMESGVSENAVSGHIQLIIPGESACFAC 192


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,416,494
Number of extensions: 189105
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 38
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.2 bits)