RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3331
(214 letters)
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 137 bits (345), Expect = 3e-40
Identities = 50/99 (50%), Positives = 65/99 (65%)
Query: 100 FCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDG 159
CDL+WSDP + W +SPRGAG+ FG ++ F H N L L+ RAHQLV EGY + D
Sbjct: 190 MCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDR 249
Query: 160 NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 198
N+VTI+SAPNYCYRCGN A+I++ + + F P
Sbjct: 250 NVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAP 288
Score = 61.2 bits (148), Expect = 6e-12
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 37/93 (39%)
Query: 2 SHKLDEWVEIAQQCKYLPENELKSKKFVKGGTYYTALAKMKILNFPPHVKLDNIVHRSLE 61
+ +LD+W+E +CK L E+++KS
Sbjct: 2 TKELDQWIEQLNECKQLSESQVKS------------------------------------ 25
Query: 62 TLCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
LC+ IL +ESNVQ V PVTVCGD+HGQ+
Sbjct: 26 -LCEKAKEILTKESNVQEVRCPVTVCGDVHGQF 57
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 135 bits (341), Expect = 3e-39
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 100 FCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDG 159
CDL+WSDP ++S RG FG VT F+ N+L I R+H++ EGY+ G
Sbjct: 206 MCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGG 265
Query: 160 NLVTIWSAPNYCYRCGNIASILKFNSVD-NRTPALFQAVP 198
VT++SAPNYC + GN AS + D F AVP
Sbjct: 266 RCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 305
Score = 46.1 bits (109), Expect = 9e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 49 HVKLDNIVHRS-LETLCDFVCSILNEESNVQHVST----PVTVCGDIHGQY 94
K +HR + V +L++ S + + +TVCGD HGQ+
Sbjct: 22 WYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQF 72
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 131 bits (331), Expect = 4e-38
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 98 GAFCDLVWSDPAE-VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 156
G CDL+WSDP + V W + RG + FGA+V +F+H + L LICRAHQ+V +GY++
Sbjct: 194 GLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFF 253
Query: 157 FDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQA 196
LVT++SAPNYC N +++ + + + +
Sbjct: 254 AKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 293
Score = 52.3 bits (125), Expect = 6e-09
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 51 KLDNIVHRSLETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQYI 95
K + + LC I + + + P+ +CGDIHGQY
Sbjct: 21 KNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYY 65
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 125 bits (314), Expect = 2e-34
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 98 GAFCDLVWSDPAE--------VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLV 149
G CD++WSDP E + RG + + EF+ N+L I RAH+
Sbjct: 212 GPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQ 271
Query: 150 HEGYKYMFDG------NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNE 200
GY+ +L+TI+SAPNY N A++LK+ + + F P+
Sbjct: 272 DAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN-NVMNIRQFNCSPHP 327
Score = 54.2 bits (130), Expect = 2e-09
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 49 HVKLDNIVHRS-LETLCDFVCSILNEESNVQHVSTPVTVCGDIHGQY 94
H+ + + S + SIL +E N+ + PVTVCGDIHGQ+
Sbjct: 36 HLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQF 82
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 25.3 bits (54), Expect = 4.2
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 134 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRC 174
I + H+ +I RA + E + + +
Sbjct: 12 ITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKL 52
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 26.0 bits (56), Expect = 4.2
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 134 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 170
I HL+L A ++ +Y ++ Y
Sbjct: 16 ITNMHLRLFELAKDYMNGTGRYTVVKGII-SPVGDAY 51
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein,
GcvT {Thermotoga maritima [TaxId: 2336]}
Length = 83
Score = 24.4 bits (53), Expect = 4.4
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 139 LKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCG-NIA 178
L+L + + +GY+ + +G V ++ N+ G +IA
Sbjct: 6 LELSGKR--IARKGYEVLKNGERVGEITSGNFSPTLGKSIA 44
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 25.6 bits (55), Expect = 4.7
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 84 VTVCGDIHGQYIYMGAFCDLVWSDPAEVETWTV-------SPRGAGWLFGAKVTHEFIHI 136
+ V GD+HG Y + D + D + +V + +
Sbjct: 15 IWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRG 74
Query: 137 NHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPN 169
NH +++ ++ +G +
Sbjct: 75 NHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYD 107
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 24.5 bits (52), Expect = 7.4
Identities = 11/56 (19%), Positives = 16/56 (28%)
Query: 133 FIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDN 188
+H H+KL+ RA QL + Y + VD
Sbjct: 12 LLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDE 67
>d1oz7a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Saw-scaled
viper (Echis carinatus), echicetin [TaxId: 40353]}
Length = 131
Score = 24.3 bits (51), Expect = 9.6
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 142 ICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDN 188
+C + Y YM T A +C + G +L S
Sbjct: 1 MCPPGWSSNGVYCYMLFKEPKTWDEAEKFCNKQGKDGHLLSIESKKE 47
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 24.2 bits (51), Expect = 9.8
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 134 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRC 174
+ HL +I RA +L + + + + R
Sbjct: 12 LTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLFSAEERL 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.451
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,158
Number of extensions: 39282
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 28
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)