BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3337
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID 163
K + Q G V LS +G ++G DG LRLW H+K++
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL 476
Query: 164 DVDFSISGEQIVSIAKDGKAFVWNS 188
V FS+ QIVS ++D +WN+
Sbjct: 477 SVAFSLDNRQIVSASRDRTIKLWNT 501
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS 168
+++ AG V +S +G L +GG DG + LW + K L +EA+S I + FS
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFS 611
Query: 169 ISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
+ + + + G +W+ ++ S+ ++LK
Sbjct: 612 PNRYWLCAATEHGIK-IWDLESKSIVEDLK 640
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 111 TVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-----AHSKEIDDV 165
T+ A ++ + + N D++V+ D + LW K + HS ++DV
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSR 225
S G+ +S + DG+ +W+ G ++ +T D + F +V S R R
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV--SASRDR 494
Query: 226 LFTLANPLAQNKRGIS 241
L N L + K IS
Sbjct: 495 TIKLWNTLGECKYTIS 510
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
R V S +G + TG D +R+W K ++ ++ H ++I +D+ SG+++VS + D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 181 GKAFVWNSKNGSLSKEL 197
+W+ + G S L
Sbjct: 187 RTVRIWDLRTGQCSLTL 203
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 122 VVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
VR S + D ++V+GG D +++W + + ++ H+ + V S G S K
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN 231
DG A +W+ G E+ P N + F RY + + K R+F L N
Sbjct: 217 DGVARLWDLTKGEALSEMAAGAPIN-QICFSPNRYWMCAATEKGIRIFDLEN 267
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V LS NG+ V+ D LRLW+ + H+K++ V FS QIVS +D
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISY 242
VWN K + + D + V SP +L P+ + +
Sbjct: 133 LRVWNVKGECMHTLSRGAHTDWVS---------CVRFSP------SLDAPVIVSGGWDNL 177
Query: 243 VQQWDVDSGRLRL-AREMKESLSALAVRDDGRFVA 276
V+ WD+ +GRL + ++++ V DG A
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 117 ESLQRVVRLSRNGDLMVTG-GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV 175
E+ +VV SR+ L+ G D H S+ P +E HS + DV S +G V
Sbjct: 26 ETATKVVSTSRDKTLLSWGPNPDRHSSECSY--GLPDRRLEGHSAFVSDVALSNNGNFAV 83
Query: 176 SIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLF 209
S + D +WN +NG + +T D + F
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 183 SGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHT 282
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 118
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 119 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 174
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 175 LCRIWDTASGQCLK 188
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 140 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 197 SGQCLKTL 204
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 275 DNLVYIWNLQTKEIVQKLQGHT 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 132
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 133 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 188
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 189 LCRIWDTASGQCLK 202
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 154 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 245
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 183 SGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHT 282
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 25/172 (14%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 118
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFV 275
NP + S+ V+ WDV +G+ L+ + +SA+ DG +
Sbjct: 119 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 140 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 202 SGQCLKTL 209
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHT 301
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 137
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 138 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 193
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 194 LCRIWDTASGQCLK 207
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 101 FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHS 159
+ KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
+ V FS +G+ I++ D +W+ G K
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 250
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 204 SGQCLKTL 211
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHT 303
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 139
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 140 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 195
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 196 LCRIWDTASGQCLK 209
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 101 FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHS 159
+ KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ +
Sbjct: 158 WDVKTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 160 KEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
+ V FS +G+ I++ D +W+ G K
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 252
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 185 SGQCLKTL 192
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHT 284
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 120
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 121 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 176
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 177 LCRIWDTASGQCLK 190
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 142 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 233
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 180 SGQCLKTL 187
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHT 279
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 115
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 116 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 171
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 172 LCRIWDTASGQCLK 185
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 137 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 186 SGQCLKTL 193
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHT 285
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 121
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 122 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 177
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 178 LCRIWDTASGQCLK 191
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 143 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 183 SGQCLKTL 190
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHT 282
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + D +++W K I H I DV +
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 118
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 119 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 174
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 175 LCRIWDTASGQCLK 188
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 140 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 181 SGQCLKTL 188
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHT 280
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 116
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 117 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 172
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 173 LCRIWDTASGQCLK 186
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 138 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 229
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 186 SGQCLKTL 193
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHT 285
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 121
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 122 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 177
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 178 LCRIWDTASGQCLK 191
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 143 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 180 SGQCLKTL 187
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHT 279
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 115
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 116 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 171
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 172 LCRIWDTASGQCLK 185
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 137 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 176 SGQCLKTL 183
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHT 275
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 111
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 112 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 167
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 168 LCRIWDTASGQCLK 181
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 133 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 224
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 186 SGQCLKTL 193
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHT 285
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 121
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 122 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 177
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 178 LCRIWDTASGQCLK 191
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 143 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 234
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W K L + AHS + V F+ G IVS + DG +W++
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 179 SGQCLKTL 186
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHT 278
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+++ AG V+ S NG+ + + D +++W K I H I DV +
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 168 SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLF 227
S +VS + D +W+ +G K LK ++ Y+F C +
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF------------- 114
Query: 228 TLANPLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTG 283
NP + S+ V+ WDV +G+ L+ + +SA+ DG + V + + G
Sbjct: 115 ---NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDG 170
Query: 284 SVFVYIAFSLQMCR 297
++ S Q +
Sbjct: 171 LCRIWDTASGQCLK 184
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 136 KTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 227
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
Q G V +S +G ++G DG LRLW H+K++ V FS
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTL 229
QIVS ++D +WN+ K+ D + C V SP S
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLG-----VCKYTVQDESHSEWVSC----VRFSPNSS----- 184
Query: 230 ANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVRDDGRFVAVG 278
NP+ + V+ W++ + +L+ L+ + V DG A G
Sbjct: 185 -NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 122 VVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
VR S N ++V+ G D +++W+ K + H+ ++ V S G S K
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235
Query: 180 DGKAFVWNSKNG 191
DG+A +W+ G
Sbjct: 236 DGQAMLWDLNEG 247
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 130 DLMVTGGTDGHLRLWSFPKMK-----PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
D++++ D + +W + + P + HS + DV S G+ +S + DG
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK 237
+W+ G+ ++ +T D + F +V S R + L N L K
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCK 162
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
Q G V +S +G ++G DG LRLW H+K++ V FS
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 170 SGEQIVSIAKDGKAFVWNS 188
QIVS ++D +WN+
Sbjct: 116 DNRQIVSGSRDKTIKLWNT 134
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 122 VVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
VR S N ++V+ G D +++W+ K + H+ ++ V S G S K
Sbjct: 153 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 212
Query: 180 DGKAFVWNSKNG 191
DG+A +W+ G
Sbjct: 213 DGQAMLWDLNEG 224
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 130 DLMVTGGTDGHLRLWSFPKMK-----PLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
D++++ D + +W + + P + HS + DV S G+ +S + DG
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNK 237
+W+ G+ ++ +T D + F +V S R + L N L K
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCK 139
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W L + AHS + V F+ G IVS + DG +W++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 183 SGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHT 282
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
AG V+ S NG+ + + D +++W K I H I DV +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELK 198
+VS + D +W+ +G K LK
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V S + +L+V+ D L++W K L ++ HS + +F+ IVS + D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 183 AFVWNSKNGSLSKEL 197
+W+ K G K L
Sbjct: 134 VRIWDVKTGMCLKTL 148
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 140 KTGMCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 231
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 147 PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
P + + H+K + V FS +GE + S + D +W + +G K +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+L+V+G D +R+W L + AHS + V F+ G IVS + DG +W++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 190 NGSLSKEL 197
+G K L
Sbjct: 183 SGQCLKTL 190
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV--DFSIS-GEQIVSIAK 179
V+ S NG ++ D L+LW + K K L H E + +FS++ G+ IVS ++
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 180 DGKAFVWNSKNGSLSKELKWNT 201
D ++WN + + ++L+ +T
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHT 282
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
AG V+ S NG+ + + D +++W K I H I DV +S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN 231
+VS + D +W+ +G K LK ++ Y+F C + N
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHS----NYVF-CCNF----------------N 119
Query: 232 PLAQNKRGISY---VQQWDVDSGR-LRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFV 287
P + S+ V+ WDV +G L+ + +SA+ DG + V + + G +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRI 178
Query: 288 YIAFSLQMCR 297
+ S Q +
Sbjct: 179 WDTASGQCLK 188
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPL-LHIEAHSKEI 162
KT ++T+ A S+ + V +R+G L+V+ DG R+W + L I+ + +
Sbjct: 140 KTGMCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS +G+ I++ D +W+ G K
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK 231
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 147 PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
P + + H+K + V FS +GE + S + D +W + +G K +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIA 178
+ V +S +G+++V+G D L +W +MK L + H+ I + ++ +S +
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 179 KDGKAFVWNSKNGSLSKELKWNT 201
D +W+ +NG L L+ +T
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHT 352
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 101 FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
+ ++T D +T+ ++S+Q + +G L+ + D ++LW F + + + H
Sbjct: 135 WDYETGDFERTLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193
Query: 161 EIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
+ V +G+ IVS ++D +W + G K
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 40/96 (41%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S++K ++ + G ++ R V G +++ D LR+W + + +
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
+ AH + +DF + +V+ + D VW +
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
S +G + + G D L+++ + LL I+AH E+ FS I + + D K
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 185 VWNSKNGSL 193
+WNS G L
Sbjct: 689 IWNSMTGEL 697
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
+S + + D ++WSF + PL + H+ + FS+ + + +G+
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 185 VWNSKNGSL 193
+WN NG L
Sbjct: 1159 IWNVSNGEL 1167
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 31/166 (18%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN 190
L+ TG +D L+LW + + + H+ ++ FS + + S + DG +W++ +
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 191 GSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDS 250
+ K + N+K F L +P ++ I W D
Sbjct: 781 ANERKSI------NVKQFF-----------------LNLEDP-QEDMEVIVKCCSWSADG 816
Query: 251 GRLRLAREMKESLSALAVRDDGRFVAVGTMFTG--SVFVYIAFSLQ 294
R+ +A K + + G +G + TG S Y FS Q
Sbjct: 817 ARIMVA--AKNKIFLFDIHTSG---LLGEIHTGHHSTIQYCDFSPQ 857
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA---------HSKEIDDV 165
G R S + L+ TG +G +R+W+ + LLH+ A H + D+
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE-LLHLCAPLSEEGAATHGGWVTDL 1189
Query: 166 DFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
FS G+ ++S G WN G S+
Sbjct: 1190 CFSPDGKMLISAG--GYIKWWNVVTGESSQ 1217
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
S++G + + G D L+++ + LL I+AH E+ FS I + + D K
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 185 VWNSKNGSL 193
+W+S G L
Sbjct: 690 IWDSATGKL 698
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
N L+ TG D L+LW + + + H+ ++ FS E + S + DG +W+
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 188 SKNGSLSKELKW--------NTPDNIKYLFKRCRY 214
++ + K + + P++++ + K C +
Sbjct: 779 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 813
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
LS + + + G DG +++ P + H K + + F+ G+ ++S ++D
Sbjct: 976 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1035
Query: 185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ 244
VWN W T D Y+F + +++ K RL + L+ + G V+
Sbjct: 1036 VWN-----------WQTGD---YVFLQAH----QETVKDFRLLQDSRLLSWSFDGT--VK 1075
Query: 245 QWDVDSGRLR 254
W+V +GR+
Sbjct: 1076 VWNVITGRIE 1085
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 137 TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL 193
D ++WSF + PL ++ H+ + FS+ G + + +G+ +WN +G L
Sbjct: 1112 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1168
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----------HSKEIDD 164
G R S +G L+ TG +G +R+W+ + LLH A H + D
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ-LLHSCAPISVEEGTATHGGWVTD 1190
Query: 165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS + +VS G WN G S+
Sbjct: 1191 VCFSPDSKTLVSAG--GYLKWWNVATGDSSQ 1219
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
S++G + + G D L+++ + LL I+AH E+ FS I + + D K
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 185 VWNSKNGSL 193
+W+S G L
Sbjct: 683 IWDSATGKL 691
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
N L+ TG D L+LW + + + H+ ++ FS E + S + DG +W+
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 188 SKNGSLSKELKW--------NTPDNIKYLFKRCRY 214
++ + K + + P++++ + K C +
Sbjct: 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
LS + + + G DG +++ P + H K + + F+ G+ ++S ++D
Sbjct: 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028
Query: 185 VWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ 244
VWN W T D Y+F + +++ K RL + L+ + G V+
Sbjct: 1029 VWN-----------WQTGD---YVFLQAH----QETVKDFRLLQDSRLLSWSFDGT--VK 1068
Query: 245 QWDVDSGRLR 254
W+V +GR+
Sbjct: 1069 VWNVITGRIE 1078
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 137 TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL 193
D ++WSF + PL ++ H+ + FS+ G + + +G+ +WN +G L
Sbjct: 1105 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----------HSKEIDD 164
G R S +G L+ TG +G +R+W+ + LLH A H + D
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ-LLHSCAPISVEEGTATHGGWVTD 1183
Query: 165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
V FS + +VS G WN G S+
Sbjct: 1184 VCFSPDSKTLVSAG--GYLKWWNVATGDSSQ 1212
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
+S +G+++V+G D L +W + K L + H+ I + ++ +S + D
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 185 VWNSKNGSLSKELKWNT 201
+W+ +NG L L+ +T
Sbjct: 336 IWDLENGELXYTLQGHT 352
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ R V S +G + + D ++LW+ + L
Sbjct: 445 SDDKTVKLWNRNGQLLQTLTGHSSSV-RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 502
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS + V FS G+ I S + D +WN +NG L + L
Sbjct: 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 545
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ R V S +G + + D ++LW+ + L
Sbjct: 76 SDDKTVKLWNRNGQLLQTLTGHSSSV-RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 133
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS + V FS G+ I S + D +WN +NG L + L
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 176
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ R V S +G + + D ++LW+ + L
Sbjct: 199 SDDKTVKLWNRNGQLLQTLTGHSSSV-RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 256
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS ++ V F G+ I S + D +WN +NG L + L
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTL 299
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ V S +G + + D ++LW+ + L
Sbjct: 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQ 379
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS + V FS G+ I S + D +WN +NG L + L
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 422
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ V S +G + + D ++LW+ + L
Sbjct: 35 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQ 92
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS + V FS G+ I S + D +WN +NG L + L
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 135
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ V S +G + + D ++LW+ + L
Sbjct: 158 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQ 215
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS + V FS G+ I S + D +WN +NG L + L
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 258
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ R V S +G + + D ++LW+ + L
Sbjct: 486 SDDKTVKLWNRNGQLLQTLTGHSSSV-RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 543
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
+ HS + V FS G+ I S + D +WN
Sbjct: 544 TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+EAHS + V FS G+ I S + D +WN +NG L + L
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 53
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ V S + + + D ++LW+ + L
Sbjct: 404 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDDQTIASASDDKTVKLWNR-NGQLLQ 461
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ HS + V FS G+ I S + D +WN +NG L + L
Sbjct: 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 504
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S +K ++ + +QT+ S S+ V +G + + D ++LW+ + L
Sbjct: 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVA-FRPDGQTIASASDDKTVKLWNR-NGQLLQ 297
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+ HS + V FS G+ I S + D +WN +NG
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNG 334
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 119 LQRVVRLSRNGDLMVTGGTDGHLRLWSFPK-MKPLLHIEAHSKEIDDVDFSISG-EQIVS 176
L V R ++ TGG DG L +W + P+ ++AH E+ +V F S E + +
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFT 298
Query: 177 IAKDGKAFVWNSK 189
++DG + W++
Sbjct: 299 CSEDGSLWHWDAS 311
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 24/162 (14%)
Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV--SIA 178
R +L +G ++ GG L +W P + E S +IS + V S
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 179 KDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFT--LANPLAQN 236
DG VW+ N +L ++ + +T ++ S ++L+T L N
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGA----------SCIDISNDGTKLWTGGLDN----- 205
Query: 237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVG 278
V+ WD+ GR + + +L G ++AVG
Sbjct: 206 -----TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
L+V+G +D +RLW L +E H + + + F ++IVS A DGK VW+
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 86 PPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWS 145
P I+ I++ E N R G S+Q + SE+ + V L + +V+G D +++W
Sbjct: 103 PKIIQDIETIESNWRCGRH---SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD 159
Query: 146 FPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
++ + H+ + + I++ + D VW+ G + L
Sbjct: 160 KNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL 209
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 126 SRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDFSISGEQIVSIAKDGKAF 184
S +G+ +VTG +G LRLW+ K LL++ H I V ++ G I+S+ +
Sbjct: 117 SHDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI 174
Query: 185 VWNSKNGSLSKELK 198
+WN +G++ + +
Sbjct: 175 LWNVISGTVMQHFE 188
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG 181
V+ + L+++ DG LR+W HS+ I + + ++++S + DG
Sbjct: 252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDG 310
Query: 182 KAFVWNSKNGSL 193
+W+ K +L
Sbjct: 311 SVRLWSLKQNTL 322
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 117 ESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI-V 175
+ + + + + +G V+GG D +++W + L AHS E++ V + I +
Sbjct: 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198
Query: 176 SIAKDGKAFVWNSKNGSLSKELKWNTPDNI 205
S +DG+ +W+++ + + + D I
Sbjct: 199 SCGEDGRILLWDTRKPKPATRIDFCASDTI 228
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 132 MVTGGTDGHLRLWSFP---KMKPLLHIEAHSKEIDDVDFSIS----GEQIVSIAKDGKAF 184
+GG D ++LW + K +EAHS + DV ++ S I S ++DG+ F
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241
Query: 185 VWNSKNGS 192
+W + S
Sbjct: 242 IWTCDDAS 249
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----EAHSKEIDDVDFSISGEQIVSIAKDGK 182
R+ +L+++ D LRLW+ + L+ I E H E+ D+ + GE+I+S D
Sbjct: 162 RDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 220
Query: 183 AFVW--NSK 189
+W NSK
Sbjct: 221 LKLWRINSK 229
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----EAHSKEIDDVDFSISGEQIVSIAKDGK 182
R+ +L+++ D LRLW+ + L+ I E H E+ D+ + GE+I+S D
Sbjct: 125 RDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 183
Query: 183 AFVW--NSK 189
+W NSK
Sbjct: 184 LKLWRINSK 192
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTP 202
++ HS ++ +D++ IVS ++DG+ VWN+ + +K + P
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP 109
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID-------- 163
+ G E V+ +G TG DG RL+ M+ ++ +++E D
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF---DMRTGHQLQVYNREPDRNDNELPI 300
Query: 164 --DVDFSISGEQIVSIAKDGKAFVWNS 188
V FSISG + + +G +VW++
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDT 327
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----EAHSKEIDDVDFSISGEQIVSIAKDGK 182
R+ +L+++ D LRLW+ + L+ I E H E+ D+ + GE+I+S D
Sbjct: 125 RDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 183
Query: 183 AFVW--NSK 189
+W NSK
Sbjct: 184 LKLWRINSK 192
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----EAHSKEIDDVDFSISGEQIVSIAKDGK 182
R+ +L+++ D LRLW+ + L+ I E H E+ D+ + GE+I+S D
Sbjct: 126 RDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 184
Query: 183 AFVW--NSK 189
+W NSK
Sbjct: 185 LKLWRINSK 193
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 127 RNGDLMVTGGTDGHLRLWSFPKMKPLLHI----EAHSKEIDDVDFSISGEQIVSIAKDGK 182
R+ +L+++ D LRLW+ + L+ I E H E+ D+ + GE+I+S D
Sbjct: 121 RDPNLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS 179
Query: 183 AFVW--NSK 189
+W NSK
Sbjct: 180 LKLWRINSK 188
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
M+T D +++W + + +E H + F + I+S ++DG +WNS
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 192 SLSKEL 197
+ K L
Sbjct: 261 KVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
M+T D +++W + + +E H + F + I+S ++DG +WNS
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 192 SLSKEL 197
+ K L
Sbjct: 261 KVEKTL 266
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
M+T D +++W + + +E H + F + I+S ++DG +WNS
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 192 SLSKEL 197
+ K L
Sbjct: 261 KVEKTL 266
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
M+T D +++W + + +E H + F + I+S ++DG +WNS
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 192 SLSKEL 197
+ K L
Sbjct: 261 KVEKTL 266
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
+ S +G + +G DG + ++ K L +E H+ I + FS + +V+ + DG
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 183 AFVWNSKN----GSLSKELKW 199
+++ ++ G+LS W
Sbjct: 230 IKIYDVQHANLAGTLSGHASW 250
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 21/189 (11%)
Query: 95 KEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH 154
+E+N FG G + LS+ ++ D LRLW
Sbjct: 59 EEQNGYFGIP-----HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR 113
Query: 155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN----SKNGSLSKELKWNTPDNIKYLFK 210
H E+ V FS QI+S + + +WN K S KE N D + +
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE---NHSDWVSCV-- 168
Query: 211 RCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKES-LSALAVR 269
RY + S + + F P + ++ W+ + ++R + ES ++ L++
Sbjct: 169 --RYSPIMKSANKVQPFA---PYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSIS 222
Query: 270 DDGRFVAVG 278
+G+++A G
Sbjct: 223 PNGKYIATG 231
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 136 GTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN 190
G DG L++W+ + +AH ++ + S +G+ I + KD K +W+ N
Sbjct: 191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
F G + + L+ +G ++ D LRLW + H ++ VD
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKEL 197
I+S ++D VW K L+ L
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLL 145
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+++ G D ++ W+ + + H+ I+ + S G I S KDG+ +WN
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 192 SLSKELKWNTPDNIKYL-FKRCRYGLVEDSPKRSRLFTL 229
L + D + L F RY L + ++F+L
Sbjct: 229 KAXYTL--SAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
++ F G S + S +G L+ + G DG + LW+ K + A +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE 239
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+AH EI + F SGE ++S ++D + +W+ K+GS + L
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 129 GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS 188
G+ +++ D L++WS + H + D+ G ++S + DG +W
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 189 KNGS 192
G+
Sbjct: 211 GTGT 214
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 156 EAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+AH EI + F SGE ++S ++D + +W+ K+GS + L
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 174
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 129 GDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS 188
G+ +++ D L++WS + H + D+ G ++S + DG +W
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 189 KNGS 192
G+
Sbjct: 208 GTGT 211
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
F G + + L+ +G ++ D LRLW + H ++ VD
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKEL 197
I+S ++D VW K L+ L
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLL 139
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+++ G D ++ W+ + + H+ I+ + S G I S KDG+ +WN
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 192 SLSKELKWNTPDNIKYL-FKRCRYGLVEDSPKRSRLFTL 229
L + D + L F RY L + ++F+L
Sbjct: 223 KAMYTL--SAQDEVFSLAFSPNRYWLAAATATGIKVFSL 259
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
++ F G S + S +G L+ + G DG + LW+ K + + A +
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
F G + + L+ +G ++ D LRLW + H ++ VD
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKEL 197
I+S ++D VW K L+ L
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL 145
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+++ G D ++ W+ + + H+ I+ + S G I S KDG+ +WN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 192 SLSKELKWNTPDNIKYL-FKRCRYGLVEDSPKRSRLFTL 229
L + D + L F RY L + ++F+L
Sbjct: 229 KAMYTL--SAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
++ F G S + S +G L+ + G DG + LW+ K + + A +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
F G + + L+ +G ++ D LRLW + H ++ VD
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKEL 197
I+S ++D VW K L+ L
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL 145
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+++ G D ++ W+ + + H+ I+ + S G I S KDG+ +WN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 192 SLSKELKWNTPDNIKYL-FKRCRYGLVEDSPKRSRLFTL 229
L + D + L F RY L + ++F+L
Sbjct: 229 KAMYTL--SAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
++ F G S + S +G L+ + G DG + LW+ K + + A +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
F G + + L+ +G ++ D LRLW + H ++ VD
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKEL 197
I+S ++D VW K L+ L
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL 145
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+++ G D ++ W+ + + H+ I+ + S G I S KDG+ +WN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 192 SLSKELKWNTPDNIKYL-FKRCRYGLVEDSPKRSRLFTL 229
L + D + L F RY L + ++F+L
Sbjct: 229 KAMYTL--SAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
++ F G S + S +G L+ + G DG + LW+ K + + A +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
G E V+ ++ GDL+ + D +W + L ++ H+ I +D +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANP 232
V+ + D +W+ NG W +P +K VE SP + + +
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVA--TWKSPVPVK---------RVEFSPCGNYFLAILDN 136
Query: 233 LAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRD 270
+ +N I+ + + + DS L + +E + + +
Sbjct: 137 VMKNPGSIN-IYEIERDSATHELTKVSEEPIHKIITHE 173
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 153 LHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+ + H + + V ++ G+ + S +KD A VW S NG
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG 64
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
F G + + L+ +G ++ D LRLW + H ++ VD
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 173 QIVSIAKDGKAFVWNSKNGSLSKEL 197
I+S ++D VW K L+ L
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL 145
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
+++ G D ++ W+ + + H+ I+ + S G I S KDG+ +WN
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 109 VQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSK 160
++ F G S + S +G L+ + G DG + LW+ K + + A +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWN 187
++ TG D + LW +K LH E+H EI V +S E I+ S D + VW+
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWN 187
++ TG D + LW +K LH E+H EI V +S E I+ S D + VW+
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 116 SESLQRVVR---LSRNGDLMVTGGTDGHLRLW--SFPKMKPLLHIEAHSKEIDDVDFSIS 170
SE QR VR S G+ + + D +W + + + +E H E+ V ++ S
Sbjct: 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 171 GEQIVSIAKDGKAFVW 186
G + + ++D +VW
Sbjct: 117 GNLLATCSRDKSVWVW 132
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWN 187
++ TG D + LW +K LH E+H EI V +S E I+ S D + VW+
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 115 GSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI 174
G++ L + S G+ V+GG D +W + + E H +++ V + SG+
Sbjct: 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF 255
Query: 175 VSIAKDGKAFVWN 187
S + D +++
Sbjct: 256 ASGSDDATCRLYD 268
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 96 EKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI 155
+K + + ++ VQ F ES VR +GD +G D RL+ ++ +
Sbjct: 220 KKAMVWDMRSGQCVQ-AFETHESDVNSVRYYPSGDAFASGSDDATCRLY---DLRADREV 275
Query: 156 EAHSKE-----IDDVDFSISGEQIVSIAKDGKAFVWNSKNGS 192
+SKE VDFS+SG + + D VW+ GS
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS 188
MK ++ H ++ +D+ +IVS ++DGK VW+S
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS 93
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWN 187
++ TG D + LW +K LH E+H EI V +S E I+ S D + VW+
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 157 AHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
AH+ +++ + F+ G ++++ D + +WNS NG
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWN 187
++ TG D + LW +K LH E+H EI V +S E I+ S D + VW+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIV-SIAKDGKAFVWN 187
++ TG D + LW +K LH E+H EI V +S E I+ S D + VW+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|4GYF|A Chain A, Crystal Structure Of Histidinol Phosphate Phosphatase
(hisk) From Lactococcus Lactis Subsp. Lactis Il1403
Complexed With Zn, L- Histidinol And Phosphate
pdb|4GC3|A Chain A, Crystal Structure Of L-histidinol Phosphate Phosphatase
(hisk) From Lactococcus Lactis Subsp. Lactis Il1403
Complexed With Zn And Sulfate
pdb|4GK8|A Chain A, Crystal Structure Of Histidinol Phosphate Phosphatase
(hisk) From Lactococcus Lactis Subsp. Lactis Il1403
Complexed With Zn And L- Histidinol Arsenate
Length = 284
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 88 ILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHL--RLW- 144
IL ++ SKEK L + FD +T S+ L + R G +T GTD H+ R W
Sbjct: 181 ILRALASKEKALEINTRLFDDPKTEQFYSDLL---INFKRLGGKFITLGTDSHIAKRDWL 237
Query: 145 SFPKMKPLL 153
S K + L+
Sbjct: 238 SIHKARTLI 246
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 135 GGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW 186
G L +W +P M + ++ H+ + + S G + S A D +W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 135 GGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW 186
G L +W +P M + ++ H+ + + S G + S A D +W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 141 LRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW 186
L +W +P M + ++ H+ + + S G + S A D +W
Sbjct: 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 87 PILNSIDSKEKNLRFG------FKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGH 140
P+++ I K + FG FKT+ + V A +++L V L G +VTGGTD H
Sbjct: 268 PLMHVIAGKA--VAFGEALTDDFKTY--IDRVLANAQALGDV--LKAGGVDLVTGGTDNH 321
Query: 141 LRL 143
L L
Sbjct: 322 LLL 324
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 133 VTGGTDGHLRLWSFPKMKPLLHIEAHSKE---IDDVDFSI-SGEQIVSIAKDGKAFVWNS 188
+T G DG + + P K H K+ + DV+FS SGE ++++ D K ++
Sbjct: 177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236
Query: 189 KNGSLSKELK 198
K+G K ++
Sbjct: 237 KSGEFLKYIE 246
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPK-------MKPLLHIEAHSKEIDDVDFSISGEQ 173
R V + L+ G D + +W+ + M L IE H E+ V +S G
Sbjct: 62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 174 IVSIAKDGKAFVWNS 188
+ + ++D ++W +
Sbjct: 122 LATCSRDKSVWIWET 136
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 134 TGGTDGHLRLWSFPKMKPLLHIEAHSKE---IDDVDFSI-SGEQIVSIAKDGKAFVWNSK 189
T G DG + + P K H K+ + DV+FS SGE ++++ D K ++ K
Sbjct: 178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237
Query: 190 NGSLSKELK 198
+G K ++
Sbjct: 238 SGEFLKYIE 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,888,682
Number of Sequences: 62578
Number of extensions: 299789
Number of successful extensions: 1178
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 293
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)