RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3337
(297 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 63.5 bits (155), Expect = 1e-11
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
G V S +G L+ TG DG +++W + L ++ H+ + DV S G
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELK 198
+ S + D +W+ + G + L
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLT 90
Score = 54.6 bits (132), Expect = 1e-08
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V S +G ++ + D +++W K L + H+ ++ V FS G + S ++DG
Sbjct: 99 VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Query: 183 AFVWNSKNGSLSKELK 198
+W+ + G L
Sbjct: 159 IKLWDLRTGKCVATLT 174
Score = 52.7 bits (127), Expect = 6e-08
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V S +G+ +++ +DG ++LW K L + H ++ V FS G + S ++DG
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 183 AFVWNSKNGSLSKELK 198
VW+ + G + L
Sbjct: 243 IRVWDLRTGECVQTLS 258
Score = 52.0 bits (125), Expect = 9e-08
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
T G V S +G + + DG ++LW K + + H+ E++ V FS
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP 187
Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
GE+++S + DG +W+ G L
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTL 215
Score = 48.5 bits (116), Expect = 1e-06
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V S +G L+ +G DG +R+W + + + H+ + + +S G+++ S + DG
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
Query: 183 AFVWN 187
+W+
Sbjct: 285 IRIWD 289
Score = 48.5 bits (116), Expect = 1e-06
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 121 RVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
R V S +G + +G +D +RLW + + + H+ + V FS G + S ++D
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 181 GKAFVWNSKNGSLSKELK 198
VW+ + G L+
Sbjct: 115 KTIKVWDVETGKCLTTLR 132
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 50.1 bits (118), Expect = 6e-07
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 17/177 (9%)
Query: 103 FKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFP-KMKPLLHIEAHSKE 161
T +++ +G V S +G L+ +G +DG +RLW L + HS
Sbjct: 228 LSTGKLLRSTLSGHSD-SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286
Query: 162 IDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP 221
+ V FS G+ + S + DG +W+ + G L L + + SP
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--------PVSSLSFSP 338
Query: 222 KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVG 278
S L + + + ++ WD+ +G+ E ++ +++ DGR V+ G
Sbjct: 339 DGSLLVS---GGSDDGT----IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388
Score = 46.6 bits (109), Expect = 7e-06
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Query: 7 SNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNN----TADTIVRKRKEKDKENA 62
S+ I + + +S+ L ++ + + V S + ++D VR D E
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW---DLETG 316
Query: 63 KQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRV 122
K K +E + D +L S S + +R + S
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL-WDLRTGKPLKTLEGHSNVLS 375
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V S +G ++ +G TDG +RLW L +++ H+ + +DFS G+ + S + D
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435
Query: 183 AFVWNSKNGSLSK 195
+W+ K S
Sbjct: 436 IRLWDLKTSLKSV 448
Score = 44.3 bits (103), Expect = 4e-05
Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 22/217 (10%)
Query: 78 NKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGT 137
N + + I D + G E + S +G+L+++G +
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSS 85
Query: 138 DGHLRLWSFPKMKPLLHI--EAHSKEIDDVDF-SISGEQIVSIAK--DGKAFVWNSKNGS 192
DG ++LW + L+ H + + S G I+ + DG +W+
Sbjct: 86 DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145
Query: 193 LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWDVDSGR 252
+++ + SP L + ++ WD+ +G+
Sbjct: 146 KLIRTLEGHSESVT---------SLAFSPDGKLLAS-------GSSLDGTIKLWDLRTGK 189
Query: 253 -LRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
L + +S+LA DG + G++ ++
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226
Score = 43.5 bits (101), Expect = 7e-05
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 4/159 (2%)
Query: 77 KNKKDKIEDPPILNSIDSKEKNLR-FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTG 135
K + IL + S + ++ + T + G + S +G L+ +G
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 136 GT-DGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE-QIVSIAKDGKAFVWNSKNGS- 192
+ DG ++LW KPL + H+ + + FS G I S + DG +W+ G
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233
Query: 193 LSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLAN 231
L L ++ + S RL+ L +
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272
Score = 40.5 bits (93), Expect = 7e-04
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 113 FAGSESLQRVVRLSRNGDLMVTGG-TDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISG 171
G E + S +G L+V+GG DG +RLW KPL +E HS + V FS G
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDG 382
Query: 172 EQIVSIAKDGKAFVWNSKNGSLSKELK 198
+ S + DG +W+ GSL + L
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLD 409
>gnl|CDD|225333 COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport
and metabolism].
Length = 346
Score = 40.4 bits (95), Expect = 7e-04
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYV 243
F ++K G LS N YL +P + L+ + P + +Y
Sbjct: 21 FNLDTKTGELSLLQLVAELGNPTYL---------AVNPDQRHLYVVNEPGEEG-GVAAY- 69
Query: 244 QQWDVDSGRLRLAREMKESLSA---LAVRDDGRFVAVGTMFTGSVFVY 288
+ D D GRL S ++V +DGRFV V +GSV VY
Sbjct: 70 -RIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 148 KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
+ L ++ H+ + V FS G+ + S + DG +W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 31.9 bits (73), Expect = 0.029
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWS 145
V S +G + +G DG ++LW
Sbjct: 18 VAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 35.0 bits (81), Expect = 0.002
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
K L ++ H+ + V FS G + S + DG VW+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 32.3 bits (74), Expect = 0.016
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWS 145
+ G V S +G+L+ +G DG +R+W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 33.5 bits (77), Expect = 0.076
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 39 KSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKN 98
+S+ S V K E ++E K+K KKE EK K KKDK E K+K
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEK-KEKKDKKEKMVEPKGSKKKKKK 189
>gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain,
of the Serine/Threonine protein kinase,
Inositol-requiring protein 1. The Luminal domain is a
dimerization domain present in Inositol-requiring
protein 1 (IRE1), a serine/threonine protein kinase
(STK) and a type I transmembrane protein that is
localized in the endoplasmic reticulum (ER). IRE1, also
called Endoplasmic reticulum (ER)-to-nucleus signaling
protein (or ERN), is a kinase receptor that also
contains an endoribonuclease domain in the cytoplasmic
side. It plays roles in the signaling of the unfolded
protein response (UPR), which is activated when protein
misfolding is detected in the ER in order to decrease
the synthesis of new proteins and increase the capacity
of the ER to cope with the stress. IRE1 acts as an ER
stress sensor and is the oldest and most conserved
component of the UPR in eukaryotes. During ER stress,
IRE1 dimerizes through its luminal domain and forms
oligomers, allowing the kinase domain to undergo
trans-autophosphorylation. This leads to a
conformational change that stimulates its
endoribonuclease activity and results in the cleavage of
its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans,
promoting a splicing event that enables translation into
a transcription factor which activates the UPR. Mammals
contain two IRE1 proteins, IRE1alpha (or ERN1) and
IRE1beta (or ERN2). IRE1alpha is expressed in all cells
and tissues while IRE1beta is found only in intestinal
epithelial cells.
Length = 295
Score = 32.3 bits (74), Expect = 0.29
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 31/103 (30%)
Query: 138 DGHL---------RLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNS 188
DG L LWS PL+ + HS D IV +DG +V N
Sbjct: 10 DGGLHAVDRKTGKILWSLKAEDPLVEVPHHSTLSIDG-----PTFIVE-PRDGSLYVLNP 63
Query: 189 KNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS---RLFT 228
N L K P I LV+ SP RS L+T
Sbjct: 64 GNEGLKK-----LPFTIPQ--------LVQSSPCRSSDGILYT 93
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 31.2 bits (71), Expect = 0.30
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 34 MNGVVKSKES-NNTADTIVRKRKEKDKENAKQKGGKKEKSNEK-GKNKKDKIED----PP 87
++ SK + D I+ + K+ K K K K EK ++ + +K + + P
Sbjct: 6 FAKILASKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKP 65
Query: 88 ILNSIDSKEKNLR 100
+L KE+ LR
Sbjct: 66 VLPEDLEKERRLR 78
>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
Length = 475
Score = 31.9 bits (73), Expect = 0.38
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 124 RLSRNGDLMVTGGTDGHLRLWSFPKMKPL 152
RL G +VTGGTD HL LW ++PL
Sbjct: 329 RLMSKGYKLVTGGTDNHLVLWD---LRPL 354
>gnl|CDD|216152 pfam00852, Glyco_transf_10, Glycosyltransferase family 10
(fucosyltransferase). This family of
Fucosyltransferases are the enzymes transferring fucose
from GDP-Fucose to GlcNAc in an alpha1,3 linkage. This
family is know as glycosyltransferase family 10.
Length = 353
Score = 31.1 bits (71), Expect = 0.63
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 213 RYGLVEDSPKRSRLFTLANPLAQNKRGISYVQ-QWDVDSGRLRLAREMK 260
YG + + L L + + +++V + S R++ RE+
Sbjct: 153 PYGYLVPLEGPEEVRVLPEILEKKSKLVAWVVSNCNEPSKRVKYYRELS 201
>gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 30.7 bits (70), Expect = 0.87
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 98 NLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF 146
L+ FKT+ + V A +++L V+ R DL V+GGTD HL L
Sbjct: 279 ALQPEFKTY--AKQVIANAQALAEVL-KERGYDL-VSGGTDNHLLLVDL 323
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 30.3 bits (68), Expect = 0.88
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 53 KRKEKDKENAKQKGGKKEKSNE-KGKNKKDKIEDPP 87
++K+K+ E Q G K ++ E KG+ + + EDPP
Sbjct: 96 EKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPP 131
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 30.6 bits (69), Expect = 1.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 39 KSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEK 97
+KE N + K KE+ KE K+K K ++ + K K++ E P KEK
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.3 bits (69), Expect = 1.3
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 25 YKITAEFTQMNGVVKSKESNNTADTIV----RKRKEKDKENAK--QKGGKKEKSNEKGKN 78
++T E ++ + SK++ IV +KR+E+ KE K G KKE+ E+ K
Sbjct: 392 LELTEE--EIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Query: 79 KKDKIEDPPILNSIDSKEK 97
KK++ ++ + + KE+
Sbjct: 450 KKEEEKEEEEEEAEEEKEE 468
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 52 RKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLR 100
+++EK+ + +G K +K K KK + E P + ++ +K L+
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAAEAVKKMLQ 78
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 52 RKRKEKDKENAKQKGGKKEKSNEKGKNKKDK 82
+K++E+ K ++K K++K +K K K K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSF 146
L + G +VTGGTD HL L
Sbjct: 319 LEKRGYDLVTGGTDNHLVLVDL 340
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 29.8 bits (67), Expect = 2.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 132 MVTGGTDGHLRLW 144
+VTGGTD HL LW
Sbjct: 458 LVTGGTDNHLLLW 470
>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 29.5 bits (66), Expect = 2.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 39 KSKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKI----EDPPIL 89
K S A T R+ K+ D+E + + +++ E G++ D I +DPP++
Sbjct: 74 KPTSSPPKAKTTRRRTKKTDQELDPEGAEEDQEAAEDGEDYDDGIDFPYDDPPLV 128
>gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein
(PQQ-dependent type I alcohol dehydrogenase). This
bacterial family of homodimeric ethanol dehydrogenases
utilize pyrroloquinoline quinone (PQQ) as a cofactor. It
represents proteins whose expression may be induced by
ethanol, and which are similar to quinoprotein methanol
dehydrogenases, but have higher specificities for
ethanol and other primary and secondary alcohols.
Dehydrogenases with PQQ cofactors, such as ethanol,
methanol, and membrane-bound glucose dehydrogenases,
form an 8-bladed beta-propeller.
Length = 529
Score = 29.2 bits (66), Expect = 2.7
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 17/62 (27%)
Query: 125 LSRNGDLMVTGGTDGHLR---------LWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIV 175
L+ G L+ TG DG+ R LW F V + + G+Q V
Sbjct: 443 LTTAGGLVFTGTPDGYFRAFDAKTGKELWEFQT--------GSGIIGPPVTWEVDGKQYV 494
Query: 176 SI 177
++
Sbjct: 495 AV 496
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 28.6 bits (64), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 46 TADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPI 88
+K K+K E+ K++ KK+K +K K K+ E P +
Sbjct: 136 GLKGHEKKHKKKKHEDDKER--KKKKKEKKKKKKRHSPEHPGV 176
>gnl|CDD|222706 pfam14356, DUF4403, Domain of unknown function (DUF4403). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 455 and 518 amino
acids in length. There is a single completely conserved
residue W that may be functionally important.
Length = 425
Score = 29.1 bits (66), Expect = 2.9
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 95 KEKNLRFGFK-TFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
K L G K T SV V+ + L V+ + V G +G + L +P+
Sbjct: 273 KTFPLSGGRKVTVKSVS-VYGSGDRL--VI------AVDVDGSLNGTVYLSG----RPVY 319
Query: 154 HIEAHSKEIDDVDFSI 169
+ ++D+DF +
Sbjct: 320 DAATQTLRLEDLDFDV 335
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ
is a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling.
Length = 479
Score = 28.8 bits (65), Expect = 3.7
Identities = 11/15 (73%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Query: 265 ALAVRDDGRFVAVGT 279
A+AVRD GR VAVG+
Sbjct: 1 AVAVRD-GRIVAVGS 14
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 29.0 bits (65), Expect = 3.9
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 26 KITAEFTQMNGVVKSK-ESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIE 84
+ + + + KS +++NT ++ R+ + D Q GG + K + +
Sbjct: 78 TVPKQSIESSSPEKSDVDTSNTRPSVSRELHKDDYVGPDQDGGWQRKVELSSEQELSDFT 137
Query: 85 DPPILNSIDSKEKNLRFGFKTFDSVQTVFAGS 116
D IL + K+ F + SV V GS
Sbjct: 138 DMSILLNYILKK----FYGDWYQSVAIVLIGS 165
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 28.4 bits (64), Expect = 5.4
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 114 AGSESLQRVVRLSRNG--DLMVTGGTDGHLR---LWSFPKMKPLLHIEAHSKEIDD 164
G+ ++ VRL R G D+++ GG + + + F M+ A S DD
Sbjct: 164 TGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMR------ALSTRNDD 213
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 28.5 bits (64), Expect = 5.5
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 264 SALAVRDDGRFVAVGT 279
A+A++D GR VAVG+
Sbjct: 25 EAVAIKD-GRIVAVGS 39
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 28.1 bits (63), Expect = 6.7
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 58 DKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKN 98
+ E +QK K+K +K K K D + +N
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISEN 47
>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional.
Length = 493
Score = 28.1 bits (63), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 120 QRVV--------RLSRNGDLMVTGGTDGHLRL 143
Q+VV + G +VTGGTD HL L
Sbjct: 342 QQVVDNARALAEGFLKRGARLVTGGTDNHLVL 373
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 27.8 bits (62), Expect = 7.1
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 40 SKESNNTADTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNL 99
S+E N A T +K K++DK N +K +EK K KK + ++P E
Sbjct: 43 SEEENKVATTSTKKDKKEDKNNE------SKKKSEKKKKKKKEKKEP-------KSEGET 89
Query: 100 RFGFKT 105
+ GFKT
Sbjct: 90 KLGFKT 95
>gnl|CDD|220674 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This
entry contains bacterial 6-phosphogluconolactonases
(6PGL)YbhE-type (EC:3.1.1.31) which hydrolyse
6-phosphogluconolactone to 6-phosphogluconate. The entry
also contains the fungal muconate lactonising enzyme
carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and
muconate cycloisomerase (EC:5.5.1.1), which convert
cis,cis-muconates to muconolactones and vice versa as
part of the microbial beta-ketoadipate pathway.
Structures of proteins in this family have revealed a
7-bladed beta-propeller fold.
Length = 344
Score = 27.6 bits (62), Expect = 7.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 245 QWDVDSGRLRL---AREMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
+ D D+G+L L S L+V DGRF+ V GSV VY
Sbjct: 67 RIDPDTGKLTLLNQVPTGGASPCHLSVDPDGRFLFVANYGGGSVSVY 113
>gnl|CDD|185390 PRK15493, PRK15493, 5-methylthioadenosine/S-adenosylhomocysteine
deaminase; Provisional.
Length = 435
Score = 27.7 bits (61), Expect = 7.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 147 PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKE 196
P KP H++ + + + ++ SG+ I + +GK VWN + +L +E
Sbjct: 373 PSNKP--HLQPADEVLSHLVYAASGKDISDVIINGKRVVWNGECKTLDEE 420
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 27.9 bits (62), Expect = 8.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 12 IYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQKGGKKEK 71
+ ++ G E QLYK + + G+ K+ E A + + K+K G EK
Sbjct: 334 VRLLNGNEQIIQLYKDLVKLQRHAGIKKAME--KLAAQQEEDAGNQGGGDCKKKQGASEK 391
Query: 72 SNEKGKNKK 80
S E GK K+
Sbjct: 392 SKEGGKGKE 400
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 26.3 bits (58), Expect = 8.9
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 38 VKSKESNNTA----DTIVRKRKEKDKENAKQKGGKKEKSNEKGKNKKDKIEDPPILNSID 93
+ K++ T D I K++ K+ + + K+ +KG+ K K ++ P +
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFP-----E 55
Query: 94 SKEKNLR 100
E++ R
Sbjct: 56 FPEESKR 62
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 27.5 bits (61), Expect = 9.1
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 37 VVKSKESNNTADTIVRK---RKEKDKENAKQKGGKKEKSNEKG--KNKKDKIEDPPILNS 91
K N+ +TI R+ + K K + E E G N K+K + + +
Sbjct: 7 ATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSD 66
Query: 92 IDS 94
+DS
Sbjct: 67 VDS 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,779,740
Number of extensions: 1404779
Number of successful extensions: 2074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1949
Number of HSP's successfully gapped: 102
Length of query: 297
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 201
Effective length of database: 6,679,618
Effective search space: 1342603218
Effective search space used: 1342603218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)