RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3337
(297 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 65.5 bits (158), Expect = 7e-13
Identities = 18/93 (19%), Positives = 39/93 (41%)
Query: 94 SKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLL 153
S++K ++ + G ++ R V G +++ D LR+W + + +
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283
Query: 154 HIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVW 186
+ AH + +DF + +V+ + D VW
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 59.8 bits (143), Expect = 7e-11
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG 181
+ + G +++G D +++W L+ + H + V F G+ I+S A D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 182 KAFVWNSKNGSLSKELK 198
VW+ KN K L
Sbjct: 270 TLRVWDYKNKRCMKTLN 286
Score = 45.9 bits (107), Expect = 2e-06
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 142 RLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT 201
+ W P+ + H + V F +VS ++D VW+ + G + LK +T
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Score = 42.4 bits (98), Expect = 3e-05
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
+G S V +MV+ D +++W + ++ H+ + D+ F
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 63.2 bits (152), Expect = 6e-12
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
V S++G L++ G D + +W K + H + + + G + + + D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 183 AFVWN 187
+WN
Sbjct: 336 LKIWN 340
Score = 53.2 bits (126), Expect = 1e-08
Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 17/152 (11%)
Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
+ L V+G D +LW + H +I+ + F +G + + D +++
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 188 SKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQWD 247
+ + C V S L + WD
Sbjct: 255 LRA--------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD--------FNCNVWD 298
Query: 248 VDSG-RLRLAREMKESLSALAVRDDGRFVAVG 278
R + +S L V DDG VA G
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 50.1 bits (118), Expect = 1e-07
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRL--WSFPKMKPLLHIEAHSKEIDDVDFSI 169
F G ES + NG+ TG D RL + + I V FS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
SG +++ D VW++ + L
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%)
Query: 70 EKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNG 129
E+ + ++ + D + ++ + R +T + G + + +
Sbjct: 12 EQLKNQIRDARKACADATLSQITNNIDPVGRIQMRT----RRTLRGHLAKIYAMHWGTDS 67
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
L+V+ DG L +W + I S + ++ SG + D ++N K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
Query: 190 N 190
Sbjct: 128 T 128
Score = 37.0 bits (84), Expect = 0.002
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 145 SFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT 201
+M+ + H +I + + +VS ++DGK +W+S + + +
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97
Score = 34.3 bits (77), Expect = 0.014
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 112 VFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWS 145
V AG ++ + ++ +G + TG D L++W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 61.7 bits (148), Expect = 1e-11
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
++ + G V+ G D L W P + + S + D S+ + IV+ + D K
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 183 AFVWN 187
A V+
Sbjct: 330 ATVYE 334
Score = 41.7 bits (96), Expect = 6e-05
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 107 DSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD 166
D Q + ++ +G + L P+ ++ H + + V
Sbjct: 1 DYFQGAMGSKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVT 58
Query: 167 FSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
S + + G VW+ + +
Sbjct: 59 ISNPTRHVYT-GGKGCVKVWDISHPGNKSPVS 89
Score = 36.3 bits (82), Expect = 0.003
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
+ H + + F+ G+ VS KD W + G+ + K
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
Score = 30.5 bits (67), Expect = 0.22
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
+ W G + S+ + + D +++ G+ VY
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-DKKATVY 333
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 56.7 bits (135), Expect = 7e-10
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD------FSISGEQIVS 176
V ++N + +++G D + W PLL ++ H + V +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 177 IAKDGKAFVWNSK 189
+ D KA +W K
Sbjct: 374 GSGDCKARIWKYK 386
Score = 51.7 bits (122), Expect = 3e-08
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 103 FKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEA----- 157
+ DS G + V +R+G +V+G D ++LW+ +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 158 -------HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
H + V + + E I+S +KD W+ K+G+ L+
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Score = 35.9 bits (81), Expect = 0.005
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 134 TGGTDGHLRLW--SFPKMKP--LLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
T+ + L+ + P+ L H+ + V FS GE + + + V+
Sbjct: 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVS 91
Query: 190 NGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFT 228
+GSL L ++ N D RS F+
Sbjct: 92 DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Score = 34.4 bits (77), Expect = 0.013
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKM 149
L ++ TG D R+W + K+
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKYKKI 388
Score = 32.5 bits (72), Expect = 0.055
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD 166
V+ S +G+ + TG + +++ + + S D +
Sbjct: 68 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 56.4 bits (134), Expect = 9e-10
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFP--KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
+++ + + + ++ K + ++ H+ ++ VD++ +IV+ D
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 181 GKAFVWN 187
A+VW
Sbjct: 73 RNAYVWT 79
Score = 31.0 bits (68), Expect = 0.16
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 6/94 (6%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
+ F G + + D L H + +
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLS 335
Query: 170 SGE----QIVSIAKDGKAFVWNSKNG-SLSKELK 198
G+ Q + DG +W+ ++ S K+LK
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
Score = 30.6 bits (67), Expect = 0.21
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSK 195
+ I ++ QI + + ++ +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ 43
Score = 30.2 bits (66), Expect = 0.27
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 111 TVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKM 149
V + + + +VT GTD + +W+
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 83
Score = 25.6 bits (54), Expect = 7.6
Identities = 9/61 (14%), Positives = 14/61 (22%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+V G D L+++ L + D KA S
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316
Query: 192 S 192
Sbjct: 317 G 317
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 53.4 bits (126), Expect = 9e-09
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV-DFSISGEQIVSIAKDGKAFVW 186
+G + + D +++W+ +K I ++ D + + +VSI+ +G
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 187 N 187
N
Sbjct: 309 N 309
Score = 41.0 bits (94), Expect = 8e-05
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 108 SVQTVFAGSESLQR----VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEID 163
S +F R V+ + GD + + + HS +
Sbjct: 4 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTT 62
Query: 164 DVDFSISGEQIVSIAKDGKAFVWNSKNG 191
S SG S G +W++
Sbjct: 63 VAKTSPSGYYCASGDVHGNVRIWDTTQT 90
Score = 39.9 bits (91), Expect = 2e-04
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 94 SKEKNLR-FGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLW 144
S +K ++ + T +T+ G+ + + + +V+ +G +
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 29.1 bits (63), Expect = 0.59
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTP 202
G +I S + D +WN + K + T
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 50.7 bits (119), Expect = 5e-08
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVDFSISGEQIVSIA 178
+ DL+ TG D ++ ++S + ++ AH ++++ + + +VS
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSG 276
Query: 179 KDGKAFVWN 187
D WN
Sbjct: 277 ADACIKRWN 285
Score = 34.9 bits (78), Expect = 0.009
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 150 KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+ L I H+K I + + ++S + DG+ W+S +
Sbjct: 4 EVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSM 41
Score = 32.2 bits (71), Expect = 0.066
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGE 172
+++G DG + WS M + HS I +D S + E
Sbjct: 24 LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQE 59
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 50.2 bits (118), Expect = 1e-07
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 4/88 (4%)
Query: 110 QTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI 169
S + V G L + K + + D+ S
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSA 324
Query: 170 SGEQIVSIAKDGKAFVWNSKNGSLSKEL 197
+ ++ DGK + + + + +
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTV 352
Score = 27.5 bits (59), Expect = 2.1
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 18/90 (20%)
Query: 165 VDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRS 224
DFS +++ G+AF+ + + + + R V
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSGT------------YVLKVPEPLRIRYVRRGGDTK 55
Query: 225 RLFTLANPLAQNKRGISYVQQWDVDSGRLR 254
F R ++ +D +G+
Sbjct: 56 VAFIHGT------REGDFLGIYDYRTGKAE 79
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 49.5 bits (116), Expect = 2e-07
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSIS---GEQIVSIAKDGKAF 184
+ T G D +R+W K + +++ + + +I+S++ DG
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 185 VWN 187
+
Sbjct: 322 FYE 324
Score = 28.3 bits (61), Expect = 1.3
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 97 KNLRFGFKTFDSVQTVFAGSESLQRVVRLS--RNGDLMVTGGTDGHLRLWSFPK------ 148
+ L G V S+ V+ S + + +G G + +W +
Sbjct: 43 RCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102
Query: 149 --MKPLLHIEAHSKEIDDVDFSISGEQIV--SIAKDGKAFVWNSKNGSLSKELKWNTPDN 204
+ + + I D+ + G ++ +D + +G+ E+ ++
Sbjct: 103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162
Query: 205 IKYLFKRCRY 214
K+ R
Sbjct: 163 NACHLKQSRP 172
Score = 28.0 bits (60), Expect = 1.5
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 104 KTFDSVQT-VFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLW 144
T VQ + + V + G+ +++ DG L +
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 48.0 bits (112), Expect = 6e-07
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVS 176
L + ++TG D +R++ K LL + H + + ++ G +VS
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 69
Score = 45.7 bits (106), Expect = 4e-06
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLH-IEAHSKEIDDVDFSISGEQIVSIAKDG 181
+ D ++ G++ +++ K + I + +I V+F + ++ KDG
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDG 345
Query: 182 KAFVW 186
++F+
Sbjct: 346 QSFLE 350
Score = 33.3 bits (74), Expect = 0.027
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 155 IEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
+ H + +++ A D V++S N +L
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLS 50
Score = 27.2 bits (58), Expect = 2.7
Identities = 6/44 (13%), Positives = 9/44 (20%), Gaps = 1/44 (2%)
Query: 103 FKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSF 146
++ V V L+ DG L
Sbjct: 310 LRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
Score = 26.8 bits (57), Expect = 3.3
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSL 193
+ H + + + I+ + + ++N ++G L
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 315
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 46.4 bits (108), Expect = 1e-06
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF 167
S+Q + SE+ + V L + +V+G D +++W ++ + H+ + + +
Sbjct: 4 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 168 S 168
Sbjct: 64 D 64
Score = 40.2 bits (92), Expect = 2e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 132 MVTGGTDGHLRLWSFPKM---------KPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
+V+G DG +++W L + HS + + F QIVS + D
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDT 288
Query: 183 AFVWN 187
+W+
Sbjct: 289 ILIWD 293
Score = 37.1 bits (84), Expect = 0.002
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG 181
+ L L+V+G +D +RLW L +E H + + + F ++IVS A DG
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 238
Query: 182 KAFVWNSKNGSLSKELKWNTP 202
K VW+ +
Sbjct: 239 KIKVWDLVAALDPRAPAGTLC 259
Score = 36.7 bits (83), Expect = 0.002
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 152 LLHIEAHSKEIDDV-DFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFK 210
L I S+ V ++IVS +D +W+ + L +T + +
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 211 RCRY 214
Sbjct: 65 ERVI 68
Score = 31.7 bits (70), Expect = 0.081
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 121 RVVRLSRNGDLMVTGGTDGHLRLW 144
RV RL + +V+ D + +W
Sbjct: 269 RVFRLQFDEFQIVSSSHDDTILIW 292
Score = 31.4 bits (69), Expect = 0.11
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 132 MVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNG 191
+V+ D +++W+ + + + H + I + + +VS + D +W+ + G
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 208
Query: 192 SLSKELKWNTPDNIKYLFKRCR 213
+ + L+ + F R
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKR 230
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 45.4 bits (106), Expect = 4e-06
Identities = 15/171 (8%), Positives = 37/171 (21%), Gaps = 6/171 (3%)
Query: 120 QRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAK 179
S L + + A + + G + ++A
Sbjct: 176 ATHYLGSCPASLAASDLAAAPAAAG----IVGAQCTGAQNCSSQAAQANYPGMLVWAVAS 231
Query: 180 DGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQ-NKR 238
+ ++ + N F+ + +V + L ++
Sbjct: 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291
Query: 239 GISYVQQWDVDSGRLRLAREMKESLSALAVRDDGR-FVAVGTMFTGSVFVY 288
G+ A+ DG + T + +Y
Sbjct: 292 AAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 45.0 bits (104), Expect = 5e-06
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 132 MVTGGTDGHLRLWSF--PKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWN 187
+ TG D + +W+ P P++ AH+ + ++ IVS +D WN
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 45.0 bits (104), Expect = 5e-06
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 108 SVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHI-EAHSKEIDDVD 166
S+ V G + S +G + + +GH+ W + H+ I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 167 F 167
Sbjct: 63 T 63
Score = 39.6 bits (90), Expect = 2e-04
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 158 HSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLV 217
H+K I + S G+ + S +G W+ G ++ I + + L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 218 EDS 220
S
Sbjct: 71 TVS 73
Score = 33.0 bits (73), Expect = 0.033
Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 94 SKEKNLR-FGFKTFDSVQTVFAGSESLQRV-VRLSRNGDLMVTGGTDGHLRLWSFP 147
S + ++ + + G+ ++ V + N +V+ G D +++ W+ P
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 44.8 bits (104), Expect = 5e-06
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFS 168
L G+ +V+G D L++WS K L + H+ +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Score = 44.8 bits (104), Expect = 6e-06
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 26/171 (15%)
Query: 126 SRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFV 185
+G +V+G D +R+W + + H ++ +VS D +
Sbjct: 184 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKI 241
Query: 186 WNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGISYVQQ 245
W+ K G + L+ + V S V+
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT-----------------VKL 284
Query: 246 WDVDSGRL------RLAREMKESLSALAVRDDGRFVAVGTM-FTGSVFVYI 289
WD+ +G + + + + AVG+ T + +
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Score = 42.1 bits (97), Expect = 4e-05
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 10/130 (7%)
Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDF-SISGEQIVSIAKD 180
+ +++V+G D +++W + L ++ +K V + +++ + D
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279
Query: 181 GKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGI 240
G +W+ K G + L + R R S + + N
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-----SNTKLVCAVGSR----NGTEE 330
Query: 241 SYVQQWDVDS 250
+ + D D
Sbjct: 331 TKLLVLDFDV 340
Score = 41.3 bits (95), Expect = 7e-05
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
W ++K ++ H + G +IVS + D VW++ G + L
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Score = 26.3 bits (56), Expect = 4.7
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 94 SKEKNLR-FGFKTFDSVQTVFA----GSESLQRVVRLSRNGDLMVTGGTDG----HLRLW 144
S + ++ + KT + ++ + GS + +R S + G +G L +
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Query: 145 SFPK 148
F
Sbjct: 337 DFDV 340
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 44.8 bits (104), Expect = 5e-06
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKP---LLHIEAHSKEIDDVDFSISGEQIVSIA 178
+++ + L++ DG L ++ F LL + + +F + + + +
Sbjct: 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Score = 40.2 bits (92), Expect = 2e-04
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 149 MKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
M+ + +A I D+ S ++ + DG V+ + + +L
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL 50
Score = 36.8 bits (83), Expect = 0.002
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 123 VRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGK 182
+ S + T G+DG + W+ K + + + E V + S + D
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDT 315
Query: 183 AFVWNSKNGSLSKELKWNTPDNIKYLF 209
+ + ++ +I +F
Sbjct: 316 FKTNAAIDQTIELN-----ASSIYIIF 337
Score = 35.6 bits (80), Expect = 0.006
Identities = 14/157 (8%), Positives = 42/157 (26%), Gaps = 9/157 (5%)
Query: 128 NGDLMVTGGTDGHLRLWSFPKMKPLL----HIEAHSKEIDDVDFSISGEQIVSIAKDGKA 183
N ++ G + ++ + P + + D E + DG+
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218
Query: 184 FVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRL-FTLANPLAQNKRGISY 242
V + +N+ + R + + + F+ +
Sbjct: 219 AVEFFDDQGD----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGT 279
+ W++ + + S + + + + T
Sbjct: 275 ISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311
Score = 35.2 bits (79), Expect = 0.007
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 126 SRNGDLMVTGGTDGHLRLWS---------------FPKMKPLLHIEAHSKEIDDVDFSIS 170
+ + DG + + F + L + ++ ++FS
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262
Query: 171 GEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI 205
+ + + DG WN + K D++
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297
Score = 28.7 bits (62), Expect = 0.83
Identities = 6/45 (13%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 122 VVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVD 166
VV+++ + +++ +D + + IE ++ I +
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQT----IELNASSIYIIF 337
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.1 bits (97), Expect = 4e-05
Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE------A 157
K F + ++ + +S V+ DG+L++W + +
Sbjct: 1 KVFIATANAGKAHDA--DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58
Query: 158 HSKEIDDVDF-------SISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNI 205
H + VD + + + + G + +K++ + D +
Sbjct: 59 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113
Score = 38.3 bits (87), Expect = 9e-04
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 126 SRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDD----VDFSISGEQIVSIAKDG 181
+ +G+ + + G DG LR W + + + H +I+ + G+ +
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
Query: 182 KAFVWNSKNGSLSKE 196
F+ + +
Sbjct: 358 VKFLKKGWRSGMGAD 372
Score = 31.7 bits (70), Expect = 0.085
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 118 SLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSI 177
LQ + R + L+ T G L + + + ++ D D +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 178 AKDGKAFVWN 187
+ +
Sbjct: 128 GASNDRLLSH 137
Score = 30.2 bits (66), Expect = 0.31
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNT 201
+ L AHS + + F+ SGE + S DGK W+ K L +
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 40.6 bits (93), Expect = 1e-04
Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 12/175 (6%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPL--LHIEAHSKEIDDVDFSISGEQI-VSIAKDGKAFVW 186
D ++ L + KM + I + G ++ K
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 187 NSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLA----QNKRGISY 242
+ G + +TP+ + SP L +P+ + +
Sbjct: 62 DLVTGETLGRIDLSTPE-----ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQMCR 297
V +D ++ R A E ++ LA DG + + ++
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP 171
Score = 35.2 bits (79), Expect = 0.008
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 3/114 (2%)
Query: 85 DPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLW 144
D + + L +T + + ++ G L +
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK--TRAFGAYNVLESF 265
Query: 145 SFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKNGSLSKELK 198
K + + V+ S G + G ++++ ++
Sbjct: 266 DLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
Score = 31.3 bits (69), Expect = 0.13
Identities = 31/293 (10%), Positives = 73/293 (24%), Gaps = 24/293 (8%)
Query: 5 VHSNGKNIYVVAGQENSNQLYKITAEFTQMNGVVKSKESNNTADTIVRKRKEKDKENAKQ 64
V G+ Y + S + T + + E + + +
Sbjct: 41 VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100
Query: 65 KGGKKEKSNEKGKNKKDKIEDPPILNSIDSKEKNLRFGFKTFDSVQTVFAGSESLQRVVR 124
+ E ++ + + + + D L+ + E + + + V
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY-GLGRDLHVM 159
Query: 125 LSRNGDLMVTGGTDGHLRLWSFP---KMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDG 181
G L+ H + + A
Sbjct: 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219
Query: 182 KAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKRGIS 241
+ + G ++ +P ++R F N
Sbjct: 220 GLLTMDLETGEMAMREVRIMDVFYFS---------TAVNPAKTRAFGAYN---------- 260
Query: 242 YVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVYIAFSLQ 294
++ +D++ + S ++ V DG V +G G + Y A +L+
Sbjct: 261 VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL-GDLAAYDAETLE 312
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.8 bits (86), Expect = 0.001
Identities = 14/167 (8%), Positives = 32/167 (19%), Gaps = 13/167 (7%)
Query: 125 LSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIE-AHSKEIDDVDFSISGEQI-VSIAKDGK 182
L + M+ +L + + V G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 183 AFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSPKRSRLFTLANPLAQNKR---- 238
+ + + ++ SP ++ NP +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 239 GISYVQQWDVDSGRLRLAREM---KESLSALAVRDDGRFVAVGTMFT 282
++ + G + + DDG G
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY 166
Score = 35.9 bits (81), Expect = 0.005
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 130 DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSK 189
D G L + + K + V F G+++ V+N
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 190 NGSLSKELK 198
K +K
Sbjct: 322 TLEKVKNIK 330
Score = 32.0 bits (71), Expect = 0.069
Identities = 15/193 (7%), Positives = 52/193 (26%), Gaps = 23/193 (11%)
Query: 106 FDSVQTVFAGSESLQRVVRLSRNGDLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDV 165
+ + + + + + + + +S P + ++ E +
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210
Query: 166 D----FSISGEQIVSIAKDGKAFVWNSKNGSLSKELKWNTPDNIKYLFKRCRYGLVEDSP 221
F + + + K G + + + + +
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-- 268
Query: 222 KRSRLFTLANPLAQNKRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMF 281
++ + ++D+ +L A + + +A G + +G F
Sbjct: 269 ----------------GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 312
Query: 282 TGSVFVYIAFSLQ 294
+ V+ +L+
Sbjct: 313 -NDLAVFNPDTLE 324
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 37.5 bits (85), Expect = 0.001
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 11/191 (5%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNG-DLMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEI 162
+ D + R+G V GT+G + P I
Sbjct: 143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-----I 197
Query: 163 DDVDFSISGEQIVSIAKDGKAFVWNSKNGSLS--KELKWNTPDNIKYLFKRCRYGLVEDS 220
+ +S ++V GK + +G ++ T ++ + V
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257
Query: 221 PKRSRLFTLANPLAQN--KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVG 278
R++ L + + K +V D +G EM + ++ V D + +
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 317
Query: 279 TM-FTGSVFVY 288
+++++
Sbjct: 318 LSTGDKTLYIH 328
Score = 27.8 bits (60), Expect = 1.8
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 123 VRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKD 180
+ +S++ L D L + + L + G Q+++ A
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH----------GPQVITTADM 354
Query: 181 G 181
G
Sbjct: 355 G 355
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 33.0 bits (74), Expect = 0.036
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQIVSIAKDGKAFVWNSKN 190
VT G + L K + I+ + S SG ++ I +D + + +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA 92
Query: 191 GSLSKELKWNTPDN 204
+K +
Sbjct: 93 KEPTKVAEIKIGIE 106
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 31.4 bits (69), Expect = 0.12
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 243 VQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
+ DV S ++ + + + DG V V + V +
Sbjct: 14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSII 59
Score = 30.2 bits (66), Expect = 0.25
Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 144 WSFPKMKPLLHIEAHSKEIDDVDFSISGEQI-VSIAKDGKAFVWNSKNGSLSKELK 198
K I + + + G+++ V+++ V ++ +++ +
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
Score = 26.8 bits (57), Expect = 3.6
Identities = 4/54 (7%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 104 KTFDSVQTVFAGSESLQRVVRLSRNGD-LMVTGGTDGHLRLWSFPKMKPLLHIE 156
T + G + + ++ +G + V + + +
Sbjct: 232 GTNKITARIPVGPDP--AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 30.6 bits (67), Expect = 0.22
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 243 VQQWDVDS-GRLRLAR--EMKESLSALAVRDDGRFVAVGTMFTGSVFVY 288
+ W+++ G L L + ++ + + V D R++ VG V Y
Sbjct: 16 IHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 29.8 bits (66), Expect = 0.48
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 117 ESLQRVVRLSRNGD--LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSISGEQI 174
E + + VT G + L + ++ + S SG +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYL 76
Query: 175 VSIAKDGKAFVWNSKNGSLSKELK 198
I +DGK + + + +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAE 100
>d1v58a2 d.17.3.1 (A:2-61) Thiol:disulfide interchange protein DsbG,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 60
Score = 25.8 bits (57), Expect = 1.4
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 237 KRGISYVQQWDVDSGRLRLAREMKESLSALAVRDDGRFVAVGTMF 281
K+GI+ ++ +D G + ++ + + DG+ G M+
Sbjct: 11 KQGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISGYMY 55
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 27.9 bits (62), Expect = 1.8
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 131 LMVTGGTDGHLRLWSFPKMKPLLHIEAHSKEIDDVDFSI-SGEQIVSIAKDGKAFVWNSK 189
+ G + + + K+ L E + D + G + DG+ + +
Sbjct: 272 FIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT- 328
Query: 190 NGSLSKELKWNTPDNIK 206
S+ KWN D IK
Sbjct: 329 LFIDSQVCKWNIADAIK 345
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 26.1 bits (56), Expect = 6.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 125 LSRNGDLMVTGGTDGHLR---------LWSFP 147
++ GDL+ G DG+L+ LW F
Sbjct: 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511
>d2nwaa1 b.122.1.13 (A:1-80) Hypothetical protein YtmB {Bacillus
subtilis [TaxId: 1423]}
Length = 80
Score = 24.0 bits (52), Expect = 8.2
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 1 MNCDVHS----NGKNIYVVAGQENSNQLYKITAEFTQMN---GVVKSKESNNTADTIVRK 53
M + ++ GK + + EN L K M V K+K + V+K
Sbjct: 3 MPVEFNTLIVTKGKEVRI---DENIFTLEKDGYRVYPMEIPMDVRKTKFGEKSGTAEVQK 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,055,709
Number of extensions: 48240
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 90
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.2 bits)