BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3338
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D+ G T LHYAA+ +K I LLIS+GA+VNA G+ TPLH AA ++EI
Sbjct: 27 GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEI 85
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
V LL+ GAD KDSDG T L + KE H++I ++L+ + +D+ T+
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 13/122 (10%)
Query: 31 TTGRYP------PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGA 78
+ GR P GH I + D N D+ G T LHYAA+ +K I LLIS+GA
Sbjct: 35 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 79 NVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQ 138
+VNA G+ TPLH AA ++EIV LL+ GAD DSDG T LD +R+ +E+I +
Sbjct: 95 DVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 139 IL 140
+L
Sbjct: 154 LL 155
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AA + NK LI GA+VNA G+ TPLH AA ++EIV LL+ GAD KDSD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + KE H++I ++L+ + +D+
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADV 96
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 31 TTGRYP------PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGA 78
+ GR P GH I + D N D+ G T LHYAA+ +K I LLIS+GA
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 79 NVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
+VN G+ TPL A NEEIV LL G
Sbjct: 128 DVNTSDSDGR-TPLDLAREHGNEEIVKLLEKQGG 160
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 94 RAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
AA N++ V L++NGAD DSDG T L + KE H++I ++L+ + +D+
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
DPN D+ G T LHYAA + +K I LL+S+GA+ NA G+ TPLH AA ++EI
Sbjct: 27 GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEI 85
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
V LLL GAD KDSDG T L + + H++I ++LL + +D T
Sbjct: 86 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT 131
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 12/119 (10%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
H + +LL+ G DPN D+ G T LHYAA + +K I LL+S+GA+ N
Sbjct: 49 HKEIVKLLLSKG-----------ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 82 AVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
A G+ TPLH AA ++EIV LLL GAD DSDG T LD +R+ +E+I ++L
Sbjct: 98 AKDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AA + NK L+ GA+ NA G+ TPLH AA ++EIV LLL GAD KDSD
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 121 GLTALDRSRKESHEKISQILLERFSD 146
G T L + + H++I ++LL + +D
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGAD 95
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
H + +LL+ G DPN D+ G T LHYAA + +K I LL+S+GA+ N
Sbjct: 82 HKEIVKLLLSKG-----------ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 82 AVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
G+ TPL A NEEIV LL G
Sbjct: 131 TSDSDGR-TPLDLAREHGNEEIVKLLEKQGG 160
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 94 RAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
AA N++ V LL+NGAD DSDG T L + + H++I ++LL + +D
Sbjct: 10 EAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D+ G T LH+AA + +K + LLIS+GA+VNA G+ TPLH AA ++E+
Sbjct: 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENGHKEV 85
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
V LL+ GAD KDSDG T L + + H+++ ++L+ + +D+ T
Sbjct: 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 13/122 (10%)
Query: 31 TTGRYP------PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGA 78
+ GR P GH + + D N D+ G T LH+AA + +K + LLIS+GA
Sbjct: 35 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 79 NVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQ 138
+VNA G+ TPLH AA ++E+V LL+ GAD DSDG T LD +R+ +E++ +
Sbjct: 95 DVNAKDSDGR-TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 139 IL 140
+L
Sbjct: 154 LL 155
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AA + NK LI GA+VNA G+ TPLH AA ++E+V LL+ GAD KDSD
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + + H+++ ++L+ + +D+
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADV 96
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 31 TTGRYP------PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGA 78
+ GR P GH + + D N D+ G T LH+AA + +K + LLIS+GA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 79 NVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
+VN G+ TPL A NEE+V LL G
Sbjct: 128 DVNTSDSDGR-TPLDLAREHGNEEVVKLLEKQGG 160
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 94 RAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
AA N++ V L++NGAD DSDG T L + + H+++ ++L+ + +D+
Sbjct: 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
H + +LL+ G DPN D+ G T LH AA + +K + LL+S+GA+ N
Sbjct: 49 HKEVVKLLLSQG-----------ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 82 AVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
A G+ TPLH AA ++E+V LLL GAD DSDG T LD +R+ +E++ ++L
Sbjct: 98 AKDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D+ G T LH AA + +K + LL+S+GA+ NA G+ TPLH AA ++E+
Sbjct: 27 GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEV 85
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
V LLL GAD KDSDG T L + + H+++ ++LL + +D T
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AA + NK L+ GA+VNA G+ TPLH AA ++E+V LLL GAD KDSD
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 121 GLTALDRSRKESHEKISQILLERFSD 146
G T L + + H+++ ++LL + +D
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGAD 95
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
H + +LL+ G DPN D+ G T LH AA + +K + LL+S+GA+ N
Sbjct: 82 HKEVVKLLLSQG-----------ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 82 AVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
G+ TPL A NEE+V LL G
Sbjct: 131 TSDSDGR-TPLDLAREHGNEEVVKLLEKQGG 160
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 94 RAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
AA N++ V LL+NGAD DSDG T L + + H+++ ++LL + +D
Sbjct: 10 EAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D GYT LH AAR + I +L+ GA+VNA + G TP
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TP 104
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL GAD +D G T D + +E HE I+++L
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D GYT LH AAR + I +L+ GA+VNA + G TPLH AA + EI
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHLEI 83
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL GAD KD DG T L + +E H +I ++LL+ +D+
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA + G TPLH AA + EIV +LL GAD KD D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + +E H +I ++LL+ +D+
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADV 94
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD KD DG T L + +E H +I ++LL+ +D+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D GYT LH AAR + I +L+ GA+VNA + G TPLH AA + EI
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHLEI 83
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL GAD KD DG T L + +E H +I ++LL+ +D+
Sbjct: 84 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D GYT LH AAR + I +L+ GA+VNA + G TP
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TP 104
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL GAD +D G T D + +E I+++L
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA + G TPLH AA + EIV +LL GAD KD D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + +E H +I ++LL+ +D+
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADV 94
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD KD DG T L + +E H +I ++LL+ +D+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D GYT LH AAR + I +L+ GA+VNA + G TPLH AA + EI
Sbjct: 37 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL GAD KD DG T L + +E H +I ++LL+ +D+
Sbjct: 96 VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 37 PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
GHL I V D N D GYT LH AAR + I +L+ GA+VNA + G T
Sbjct: 57 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY-T 115
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
PLH AA + EIV +LL GAD +D G TA D S +E +++IL
Sbjct: 116 PLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA + G TPLH AA + EIV +LL GAD KD D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + +E H +I ++LL+ +D+
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADV 106
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD KD DG T L + +E H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKAGADV 73
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G L I V D N D+AG T LH AA + I +L+ GA+VNA RAG TP
Sbjct: 50 GQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW-TP 108
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL +GAD +D+ GLTA D S + E +++IL
Sbjct: 109 LHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D+ G T LH AA + I +L+ GA+VNA AG TPLH AA + EI
Sbjct: 29 GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG-ITPLHLAAYDGHLEI 87
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL +GAD D G T L + +I ++LL+ +D+
Sbjct: 88 VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AA + +L++ GA+VNA G TPLH AA+ EIV +LL NGAD DS
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNG-LTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G+T L + + H +I ++LL+ +D+
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADV 98
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA+A ++ V +L+ NGAD D +GLT L + +I ++LL+ +D+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N DN GYT LH AA + + I +L+ GA+VNA G TPLH AA+ + EI
Sbjct: 37 GADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG-ITPLHLAAATGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL +GAD D+DG T L + K H +I ++LL+ +D+
Sbjct: 96 VEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D G T LH AA + + I +L+ GA+VNA G TP
Sbjct: 58 GHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH-TP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPLH AAS + EIV +LL NGAD D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGY-TPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G+T L + H +I ++LL+ +D+
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADV 106
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D+DG T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADV 73
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL + + D N D G T LH AAR+ + + LL+ GA+VNA + G+ TP
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TP 71
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LH AA + E+V LLL+ GAD KD +G T L + + H ++ ++LLE
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T LH AAR+ + + LL+ GA+VNA + G+ TPLH AA + E+V LLL+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 60
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
KD +G T L + + H ++ ++LLE +D+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL + + D N D G T LH AAR+ + + LL+ GA+VNA + G+ TP
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TP 104
Query: 92 LHRAASAANEEIVTLLLDNGA 112
LH AA + E+V LLL+ GA
Sbjct: 105 LHLAARNGHLEVVKLLLEAGA 125
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D+ G T LH AAR + I +L+ GA+VNA G TP
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHG-FTP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL NGAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D G+T LH AA + I +L+ GA+VNA G TPLH AA + EI
Sbjct: 37 GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG-VTPLHLAARRGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL NGAD DS G T L + K H +I ++LL+ +D+
Sbjct: 96 VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPLH AA + EIV +LL NGAD KDS
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G+T L + + H +I ++LL+ +D+
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADV 106
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD +D G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADV 73
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N DN G T LH AA S + I +L+ GA+V+A G TPLH AA + EI
Sbjct: 37 GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY-TPLHLAAYWGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL NGAD DSDG+T L + K + +I ++LL+ +D+
Sbjct: 96 VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D + D GYT LH AA + I +L+ GA+VNA+ G TP
Sbjct: 58 GHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM-TP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPLH AA + + EIV +LL +GAD D
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTG-TTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADV 106
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D+ G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLE 61
Query: 136 ISQILLERFSDLQTN 150
I ++LL+ +D+ +
Sbjct: 62 IVEVLLKHGADVDAS 76
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D +G+T LH AA + I +L+ GA+VNA+ G TP
Sbjct: 58 GHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY-TP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D G T LH + + I +L+ A+VNA ++G TPLH AA + EIV
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW-TPLHLAAYRGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+LL GAD D G T L + ++ H +I ++LL+ +D+
Sbjct: 98 VLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D G+T L H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IIEVLLKYAADV 73
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D G+T LH AA++ + I +L+ GA+VNA G ATPLH AA + EI
Sbjct: 37 GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPLHLAADNGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL +GAD KD +G T L + + H +I ++LL+ +D+
Sbjct: 96 VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N DN G T LH AA + + I +L+ GA+VNA G TP
Sbjct: 58 GHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG-FTP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D G T L + K H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKYGADV 73
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D G+T LH AA + I +L+ GA+VNA G +TPLH AA + EI
Sbjct: 37 GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG-STPLHLAAHFGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
V +LL NGAD KD +G+T L + H +I ++LL+ +D+
Sbjct: 96 VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D G T LH AA + I +L+ GA+VNA G TP
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNG-ITP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA+ + EIV +LL GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPLH AA + EIV +LL NGAD D+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGW-TPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDLQT 149
G T L + H +I ++LL+ +D+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLE 61
Query: 136 ISQILLERFSDLQT 149
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADVNA 75
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+AG T LH AA+ + I +L+ GA+VNA G+ TPLH AA+ + EIV
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-TPLHLAATVGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+LL+ GAD +D G TA D S +E +++IL
Sbjct: 98 VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
A R+ +L++ GA+VNA+ AG TPLH AA + EIV +LL +GAD DS
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNASDSW 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LLE +D+
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L A A ++ V +L+ NGAD D G+T L + K H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+AG T LH AA+ + I +L+ GA+VNA G+ TPLH AA+ + EIV
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR-TPLHLAATVGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+LL+ GAD +D G TA D S +E +++IL
Sbjct: 98 VLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
A R+ +L++ GA+VNA+ AG TPLH AA + EIV +LL +GAD D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNASDIW 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LLE +D+
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L A A ++ V +L+ NGAD D G+T L + K H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 37 PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
GHL I V D N D G T LH AA + I +L+ GA+VNA G T
Sbjct: 57 KGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG-FT 115
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
PLH AA A + EIV +LL GAD +D G TA D S +E +++IL
Sbjct: 116 PLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D++G T LH AA + I +L+ GA+VNA + G TPLH AA + EI
Sbjct: 37 GADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL NGAD D+ G T L + H +I ++LL+ +D+
Sbjct: 96 VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA +G+ TPLH AA + EIV +LL +GAD D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADV 106
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD +D G T L + + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D+AG T L AA + I +L+ GA+VNA G TP
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL NGAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D +G+T LH AA + + I +L+ GA+VNAV AG TPL AA + EI
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
V +LL NGAD D +G T L + H +I ++LL+ +D+
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA +G TPLH AA + EIV +LL NGAD D
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDLQTN 150
G+T L + H +I ++LL+ +D+ N
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD +D+ G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 136 ISQILLERFSDLQT 149
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADVNA 75
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D+AG T LH AA+ + I +L+ GA+VNA G+ TPLH AA+ + EI
Sbjct: 37 GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR-TPLHLAATVGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
V +LL+ GAD +D G TA D S +E +++IL
Sbjct: 96 VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
A R+ +L++ GA+VNA+ AG TPLH AA + EIV +LL +GAD +D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNARDIW 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LLE +D+
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV 106
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L A A ++ V +L+ NGAD D G+T L + K H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG++ LH AA + I L+ +GA+VNAV + G TPLH AAS EI +L
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG-CTPLHYAASKNRHEIAVML 125
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
L+ GA+ KD TA+ R+ + + K+ ILL F TNI
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL--FYKASTNI 167
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
D TALH+A + + I L+ G VN AG +PLH AASA +EIV LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVK 95
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GA + +G T L + ++ +I+ +LLE
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG++ LH AA + I L+ +GA+VNAV + G TPLH AAS EI +L
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG-CTPLHYAASKNRHEIAVML 125
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
L+ GA+ KD TA+ R+ + + K+ ILL F TNI
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL--FYKASTNI 167
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
D TALH+A + + I L+ G VN AG +PLH AASA +EIV LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLVK 95
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GA + +G T L + ++ +I+ +LLE
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G T LH AA + I +L+ GA+VNAV G TPLH AAS + EIV
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT-TPLHLAASLGHLEIVE 85
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+LL GAD KD+ G+T L + H +I ++LL+ +D+
Sbjct: 86 VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D G T LH AA + I +L+ GA+VNA G TP
Sbjct: 46 GHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG-ITP 104
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L+ AA + EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 105 LYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+ NA G+ TPLH AA+ + EIV +LL NGAD D++
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGR-TPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADV 94
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD+ D G T L + H +I ++LL +D+
Sbjct: 5 KLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D G T LH AA + I +L+ GA+VNAV G TP
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-TP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D +G T LH AA + I +L+ GA+VNA+ G +TPLH AA + EIV
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG-STPLHLAALIGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+LL +GAD D+ G T L + H +I ++LL+ +D+
Sbjct: 98 VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA T A TPLH AA+ + EIV +LL +GAD D
Sbjct: 21 AARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV 106
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D+ GLT L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D G T LH AA + I +L+ GA+VNAV G TP
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD-TP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D +G T LH AA + I +L+ GA+VNA+ G +TPLH AA + EIV
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG-STPLHLAALIGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+LL +GAD D+ G T L + H +I ++LL+ +D+
Sbjct: 98 VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA T A TPLH AA+ + EIV +LL +GAD D
Sbjct: 21 AARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV 106
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D+ GLT L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D +G T LH AA+ + I +L+ GA+VNA G +TP
Sbjct: 58 GHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIG-STP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D G T LH AAR + I +L+ GA+VNA+ +G +TPLH AA + EIV
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG-STPLHLAAKRGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+LL GAD D+ G T L + H +I ++LL+ +D+
Sbjct: 98 VLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPLH AA + EIV +LL NGAD D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGD-TPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDLQTN 150
G T L + K H +I ++LL+ +D+ +
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD +D+ G T L + + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADV 73
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D N D+ G T LH AA + + +L+ GA+VNA G TP
Sbjct: 58 GHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNG-FTP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA+ + EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G+T LH AA + I +L+ GA+VNA G TPLH AA + E+V
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG-VTPLHLAADRGHLEVVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
+LL NGAD D +G T L + H +I ++LL+ +D+
Sbjct: 98 VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPLH AA + EIV +LL NGAD DS
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDLQTN 150
G+T L + H ++ ++LL+ +D+ N
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLE 61
Query: 136 ISQILLERFSDLQTN 150
I ++LL+ +D+ +
Sbjct: 62 IVEVLLKNGADVNAD 76
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG++ LH AA + I L+ +GA VNAV + G TPLH AAS EI +L
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG-CTPLHYAASKNRHEIAVML 125
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
L+ GA+ KD TA+ R+ + + K+ ILL + TNI
Sbjct: 126 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL--YYKASTNI 167
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N + G T LHYAA N I ++L+ GAN +A +AT +HRAA+ N +++ +L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY-EATAMHRAAAKGNLKMIHIL 158
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L A + ++D++G T L + E + +++L+ + + +
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
D TALH+A + + I L+ G VN AG +PLH AASA +EIV LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLGK 95
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GA + +G T L + ++ +I+ +LLE
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
T LH A SA + EIV LL G KD G + L + ++I + LL + + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRA 95
NI D G T LH A LL+S+GA++ + + TPL A
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG++ LH AA + I L+ +GA VNAV + G TPLH AAS EI +L
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG-CTPLHYAASKNRHEIAVML 126
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
L+ GA+ KD TA+ R+ + + K+ ILL + TNI
Sbjct: 127 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL--YYKASTNI 168
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N + G T LHYAA N I ++L+ GAN +A +AT +HRAA+ N +++ +L
Sbjct: 101 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY-EATAMHRAAAKGNLKMIHIL 159
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L A + ++D++G T L + E + +++L+ + + +
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
D TALH+A + + I L+ G VN AG +PLH AASA +EIV LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLGK 96
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GA + +G T L + ++ +I+ +LLE
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
T LH A SA + EIV LL G KD G + L + ++I + LL + + +
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 100
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRA 95
NI D G T LH A LL+S+GA++ + + TPL A
Sbjct: 167 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 213
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D G T LH AA +++ I +L+ GA+VNA+ G+ TPLH A + EIV
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE-TPLHLVAMYGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+LL +GAD +D G TA D S +E +++IL
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA + G TPLH AA + EIV +LL NGAD D+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVG-LTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L H +I ++LL+ +D+
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADV 106
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD +D GLT L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADV 73
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T LH AAR+ + + LL+ GA+VNA + G+ TPLH AA + E+V LLL+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 60
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
KD +G T L + + H ++ ++LLE
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL + + D N D G T LH AAR+ + + LL+ GA+VNA + G+ TP
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TP 71
Query: 92 LHRAASAANEEIVTLLLDNGA 112
LH AA + E+V LLL+ GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGA 92
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
TPLH AA + E+V LLL+ GAD KD +G T L + + H ++ ++LLE +D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
L D N D G+T LH AA + I +L+ GA+VNA G+ TPLH AA A
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR-TPLHLAAWAD 91
Query: 100 NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+ EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 92 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L + GA+VNA G TPLH AA + EIV +LL NGAD +
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGH-TPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADV 106
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L NGAD D G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADV 73
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL I V D + D G+T LH AA + + I +L+ GA+VNA G +TP
Sbjct: 58 GHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTG-STP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQ 138
LH AA + EIV +LL GAD +D G TA D S +E +++
Sbjct: 117 LHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N DN G T LH AA S + I +L+ GA+V+A G TPLH AA + EIV
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG-FTPLHLAAMTGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+LL GAD D G T L + E H +I ++LL+ +D+
Sbjct: 98 VLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +LI+ GA+VNAV G TPLH AA + + EIV +LL +GAD D
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTG-LTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADV 106
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D+ GLT L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLE 61
Query: 136 ISQILLERFSDLQ 148
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADVD 74
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH I V D N D G+T LH AA + + I +L+ GA+VNA G TP
Sbjct: 58 GHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYG-LTP 116
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH AA + EIV +LL +GAD +D G TA D S +E +++IL
Sbjct: 117 LHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D+ G T LH AA + I +L+ GA+VNA G TPLH AA + EI
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW-TPLHLAADNGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
V +LL GAD +D+ GLT L + H +I ++LL+ +D+
Sbjct: 96 VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G +TPLH AA + EIV +LL +GAD +D+D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQG-STPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDLQTNIA 152
G T L + H +I ++LL+ +D+ A
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDA 111
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKHGADV 73
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T LH AA++ + L+S+GA+VNA ++ G TPLH AA + EIV LLL GAD
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
+ DG T ++K H +I ++L + +D+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N G T LH AA++ + I LL+++GA+VNA ++ G TP H A + EI
Sbjct: 32 GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGHHEI 90
Query: 104 VTLLLDNGAD 113
V LL GAD
Sbjct: 91 VKLLDAKGAD 100
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D G T LH AA ++ I +L+ GA+VNA G +TPLH AA + EI
Sbjct: 37 GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLAALFGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
V +LL +GAD +D G TA D S +E +++IL
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA R G TPLH AA + EIV +LL +GAD D+D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGN-TPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I ++LL+ +D+
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADV 106
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD D G T L + H +I ++LL+ +D+
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 38 GHLPIC------SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH+P+ V + GYT LH A+ N + L+ A+VNA T+ G +P
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY-SP 347
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH+AA + +IVTLLL NGA SDG T L +++ + ++ +L
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
P+ P GYT LH AA+ N + L+ G + NA + G TPLH AA + E+V L
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG-VTPLHLAAQEGHAEMVAL 263
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL A+ L + GLT L +E H ++ +L++
Sbjct: 264 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 38 GHLPIC------SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHLPI PN+ + T LH AAR+ + + L+ A VNA + Q TP
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TP 83
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LH AA + +V LLL+N A+ L + G T L + +E H + LLE+
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+PN+ AG+T LH AAR + L L+ + A+ +T+ G TPLH AA +
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVAE 163
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL+ A +GLT L + ++ I ++LL R
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
PN G T LH A NN I LL+ RG + ++ G TPLH AA E+
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARS 230
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL G + + G+T L + +E H ++ +LL +
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH AAR + + LL+ AN N T AG TPLH AA + E V LL+ A
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQA 140
Query: 116 LKDSDGLTALDRSRKESHEKISQILLER 143
G T L + K +++++LLER
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLER 168
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH A+ + PI L+ RGA+ N V+ TPLH AA A + E+ LL N A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 116 LKDSDGLTALDRSRKESHEKISQILLE 142
K D T L + + H + ++LLE
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLE 101
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D G T LH AA+ + I +L+ GA+VNA G TPLH AA + EI
Sbjct: 37 GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG-ITPLHLAAIRGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
V +LL +GAD +D G TA D S +E +++IL
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA+ G TPLH AA + EIV +LL GAD +D+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDG-LTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G+T L + H +I ++LL+ +D+
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADV 106
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD D DGLT L + + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKYGADV 73
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP++P++ G TALH A + + I L+ G NVNA G TPLH AAS N ++
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCK 120
Query: 106 LLLDNGADS-TLKDSDGLTALDRSR--KESHEKISQIL 140
L+++GA + SD TA D+ +E + + SQ L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
V+ N D+ G+T LH AA NN +C L+ GA V A+T + T
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER------ 143
T LH A A + EIV L+ G + DSDG T L + ++ ++ + L+E
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 144 --FSDLQT 149
+SD+QT
Sbjct: 132 MTYSDMQT 139
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP++P++ G TALH A + + I L+ G NVNA G TPLH AAS N ++
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCK 120
Query: 106 LLLDNGADS-TLKDSDGLTALDRSR--KESHEKISQIL 140
L+++GA + SD TA D+ +E + + SQ L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
V+ N D+ G+T LH AA NN +C L+ GA V A+T + T
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER------ 143
T LH A A + EIV L+ G + DSDG T L + ++ ++ + L+E
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 144 --FSDLQT 149
+SD+QT
Sbjct: 132 MTYSDMQT 139
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D G T L+ A + I +L+ GA+VNAV G TPLH AA + EI
Sbjct: 37 GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG-FTPLHLAAFIGHLEI 95
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+LL +GAD +D G TA D S +E +++IL
Sbjct: 96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA G TPL+ A + + EIV +LL NGAD D+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYG-LTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 121 GLTALDRSRKESHEKISQILLERFSDL 147
G T L + H +I+++LL+ +D+
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADV 106
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD KD GLT L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 136 ISQILLERFSDL 147
I ++LL+ +D+
Sbjct: 62 IVEVLLKNGADV 73
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
P D G + LH AA+ + +L+ G + +A T+ + TPLH AAS + IV +
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEV 85
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
LL +GAD KD +TAL + + +H+++ ++L++ +D+ T
Sbjct: 86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH AA + I +L+ GA+VNA + T LH A ++E+V LL+ GAD
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDML-KMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 116 LKDSDGLTALDRSRKESHEKISQIL 140
+ TA D S +E +++IL
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 37 PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
GH I V D N D TALH+A N++ + LLI GA+V+ ++
Sbjct: 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G++ LH+A R + +LI RGA +N + R G TPLH AAS + +IV
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGHRDIVQ 89
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
LL AD + G L + +++++ L+
Sbjct: 90 KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G++ LH+A R + +LI RGA +N + R G TPLH AAS + +IV
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGHRDIVQ 84
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
LL AD + G L + +++++ L+
Sbjct: 85 KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D + D G LH A + + LL+ GA VN V + TPLH AA+ EI
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEI 123
Query: 104 VTLLLDNGADSTLKDSDGLTALD 126
LLL +GAD T K+ DG T LD
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLD 146
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH+AA N + L+ GA+V+A + G PLH A S + E+ LL+ +GA
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG-LVPLHNACSYGHYEVAELLVKHGAVVN 102
Query: 116 LKDSDGLTALDRSRKESHEKISQILLERFSD 146
+ D T L + + +I ++LL+ +D
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
Q+TPLH AA +V LL +GAD KD GL L + H +++++L++
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D + D G LH A + + LL+ GA VN V + TPLH AA+ EI
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEI 125
Query: 104 VTLLLDNGADSTLKDSDGLTALD 126
LLL +GAD T K+ DG T LD
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLD 148
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH+AA N + L+ GA+V+A + G PLH A S + E+ LL+ +GA
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG-LVPLHNACSYGHYEVAELLVKHGAVVN 104
Query: 116 LKDSDGLTALDRSRKESHEKISQILLERFSD 146
+ D T L + + +I ++LL+ +D
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
Q+TPLH AA +V LL +GAD KD GL L + H +++++L++
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D + D G LH A + + LL+ GA VN V + TPLH AA+ EI
Sbjct: 69 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEI 127
Query: 104 VTLLLDNGADSTLKDSDGLTALD 126
LLL +GAD T K+ DG T LD
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLD 150
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH+AA N + L+ GA+V+A + G PLH A S + E+ LL+ +GA
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG-LVPLHNACSYGHYEVAELLVKHGAVVN 106
Query: 116 LKDSDGLTALDRSRKESHEKISQILLERFSD 146
+ D T L + + +I ++LL+ +D
Sbjct: 107 VADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
Q+TPLH AA +V LL +GAD KD GL L + H +++++L++
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G LH A + + LL+ GA VNA+ Q TPLH AAS E+ +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCS 141
Query: 106 LLLDNGADSTLKDSDGLTALD 126
LLL +GAD TL + G +A+D
Sbjct: 142 LLLSHGADPTLVNCHGKSAVD 162
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 56 TALHYAARS---NNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
TALH A S K + LL+ +GANVN + TPLH AA A+ +++ +L +GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGA 271
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
DS G TAL R+ H + ++LL SD
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAG-QATPLHRAASAANEEIVTLLLDNGADSTLKDS 119
AARS N+ + L++ NVN G ++TPLH AA IV LLL +GAD KD
Sbjct: 31 AARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
Query: 120 DGLTALDRSRKESHEKISQILLE 142
GL L + H +++++LL+
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLK 112
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
+V+ + D T LH AA N I LL+ GA+V+A + G PLH A S + E+
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG-LVPLHNACSYGHYEV 106
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LLL +GA D T L + ++ ++ +LL +D
Sbjct: 107 TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH AA + + +L GA +NA+ GQ T LHRAA A + + LLL G+D +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 116 LKDSDGLTALDRSRKESHEKISQILLE 142
+ G TA + +E + QIL E
Sbjct: 308 IISLQGFTA----AQMGNEAVQQILSE 330
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+ G TALH AA + + C LL+S G++ + ++ G AA NE + +L
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG-----FTAAQMGNEAVQQIL 328
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+VNA + G TPLH AA + EIV +LL GAD +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 121 GLTALDRSRKESHEKISQIL 140
G TA D S +E +++IL
Sbjct: 68 GKTAFDISIDNGNEDLAEIL 87
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N D GYT LH AAR + I +L+ GA+VNA + G+ T + NE++
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK-TAFDISIDNGNEDL 83
Query: 104 VTLL 107
+L
Sbjct: 84 AEIL 87
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD KD DG T L + +E H +I ++LL+ +D+
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D PD T LH+AA +N + IS+GA V+ + +TPLH A + +V
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L+ GAD +L D +G + + + + H I L+ + D+
Sbjct: 94 QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAA-RSNNKPICLLLISRGANVNAVTRAGQAT 90
GH I + D ++ D G T L +AA R+++ LL++ +VN + + T
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRK 130
LH A A N +++LLL+ GA+ ++ G +ALD +++
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T LH+A R + + + L+ GA+ + + G + +H AA + IV L+ G D
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEG-CSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 116 LKDSDGLTALDRSRKESH 133
+ D +G+T L + +H
Sbjct: 137 MMDQNGMTPLMWAAYRTH 154
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+V A + G +TPLH AA + E+V LLL+ GAD +D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNG-STPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 121 GLTALDRSRKESHEKISQIL 140
G TA D S +E +++IL
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D D G T LH AAR+ + + LL+ GA+VNA + G+ T + NE++
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK-TAFDISIDNGNEDL 87
Query: 104 VTLL 107
+L
Sbjct: 88 AEIL 91
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD KD +G T L + + H ++ ++LLE +D+
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
AAR+ +L++ GA+V A + G +TPLH AA + E+V LLL+ GAD +D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNG-STPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 121 GLTALDRSRKESHEKISQIL 140
G TA D S +E +++IL
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L AA A ++ V +L+ NGAD KD +G T L + + H ++ ++LLE +D+
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D D G T LH AAR+ + + LL+ GA+V A + G+ T + NE++
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNEDL 105
Query: 104 VTLL 107
+L
Sbjct: 106 AEIL 109
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N G LHYAA I L+ +GA++NA + TPL A + V
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVK 85
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQ 138
LLL GAD T+K DGLTAL+ + ++ + + Q
Sbjct: 86 LLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 74 ISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESH 133
+++G +VN G+ PLH AA EI+ LL GAD D +T L + E H
Sbjct: 22 VAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 80
Query: 134 EKISQILLERFSD 146
++LL + +D
Sbjct: 81 VSCVKLLLSKGAD 93
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 58 LHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLK 117
LH AA + + IC +L+ GAN++ + Q TPL AA + E V L+ GA K
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 118 DSDGLTALDRSRKESHEKISQILL 141
D++G T L + K+ H ++ Q LL
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 21 EHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANV 80
+H+ L +LL+ G D NI DN LH+AA S I +L++ ++
Sbjct: 122 KHVDLVKLLLSKGS-----------DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 81 NAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
+AV G +PLH AA + V L L +D TLK+ +G T L
Sbjct: 171 HAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
H+ + +L+ G ++ CS D P L AA +N+ LI GA V+
Sbjct: 23 HVDICHMLVQAG----ANIDTCSEDQRTP-------LMEAAENNHLEAVKYLIKAGALVD 71
Query: 82 AVTRAGQATPLHRAASAANEEIVTLLLDNGA-DSTLKDSDGLTALDRSRKESHEKISQIL 140
G +T LH AA + E+V LL NG D +D G T + + + H + ++L
Sbjct: 72 PKDAEG-STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 141 LERFSDL 147
L + SD+
Sbjct: 131 LSKGSDI 137
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
H + LL+ G+ +D N D+ G+T + +A + + LL+S+G+++N
Sbjct: 89 HYEVVQYLLSNGQ----------MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 82 AVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
+ + LH AA + +I +LL D + G + L + +E+ + L
Sbjct: 139 -IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
Query: 142 ERFSDL 147
R SD+
Sbjct: 198 SRDSDV 203
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DPN+ D+AG+T LH A + + LL+ A VN T +PLH AA + +IV
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDAAKNGHVDIVK 93
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKES 132
LLL GA + GL +D + ES
Sbjct: 94 LLLSYGASRNAVNIFGLRPVDYTDDES 120
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
+DP ++ G T LH A+ + P L+ G++ N AG TPLH A + + ++
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKV 58
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
V LLL + A + L + K H I ++LL
Sbjct: 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 80 VNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQI 139
++ T T LH A+ + V LL NG+D +KD G T L + H K+ ++
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 140 LLER 143
LL+
Sbjct: 62 LLQH 65
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 60 YAARSNNKPICLL-LISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKD 118
Y A N + C+ L+ GA+VN GQ +PLH A A+EE+ LL+D GAD+ K+
Sbjct: 139 YLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Query: 119 SDGLTALDRSRKESHEKISQILLER 143
++G ++ ES ++Q+ LER
Sbjct: 197 AEGKRPVELVPPES--PLAQLFLER 219
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 55 YTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADS 114
++ +H AA ++ LIS+G VN +T A +PLH A + V +LL +GA
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 115 TLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
+D T L + +LL+ + +Q
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N G LHYAA I L+ +GA++NA + TPL A + V
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH-HITPLLSAVYEGHVSCVK 90
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQ 138
LLL GAD T+K DGLTA + + ++ + + Q
Sbjct: 91 LLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 74 ISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESH 133
+++G +VN G+ PLH AA EI+ LL GAD D +T L + E H
Sbjct: 27 VAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85
Query: 134 EKISQILLERFSD 146
++LL + +D
Sbjct: 86 VSCVKLLLSKGAD 98
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP+ P+ G TALH A N I LI+ GANVN+ G TPLH AAS + I
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASCNDTVICM 104
Query: 106 LLLDNGA---DSTLKDSDGLTALDR 127
L+ +GA +TL SDG TA ++
Sbjct: 105 ALVQHGAAIFATTL--SDGATAFEK 127
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 56 TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADST 115
T L+ A + + L+ GA+VN GQ +PLH A+EE+ LL+D GAD+
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADTQ 249
Query: 116 LKDSDGLTALDRSRKESHEKISQILLER 143
K+++G ++ ES ++Q+ LER
Sbjct: 250 AKNAEGKRPVELVPPES--PLAQLFLER 275
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 55 YTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADS 114
++ +H AA ++ LIS+G VN +T A +PLH A + V +LL +GA
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 115 TLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
+D T L + +LL+ + +Q
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G TAL + A + LL GA+++ G T LH AA E+V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 106 LLLDNGADSTLKDSDGLTALDRSRK 130
L++ GAD ++D GLTAL+ +R+
Sbjct: 128 ALVELGADIEVEDERGLTALELARE 152
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N N G T LH A + LI GA+V + Q PLHRAAS + +++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIE 157
Query: 106 LLLDNGADST-LKDSDGLTALDRSRKESHEKISQILLERFS 145
LL G + +D G T L + E H + +L+E++
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISR--GANVNAVTRAGQATPLHRAASAANEEIVT 105
+ PD++G+T H A N + L R ++N +T G T LH A E+
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQ 124
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L++NGA +KD L R+ K+ ++L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N N G T LH A + LI GA+V + Q PLHRAAS + +++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIE 157
Query: 106 LLLDNGADST-LKDSDGLTALDRSRKESHEKISQILLERFS 145
LL G + +D G T L + E H + +L+E++
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISR--GANVNAVTRAGQATPLHRAASAANEEIVT 105
+ PD++G+T H A N + L R ++N +T G T LH A E+
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQ 124
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L++NGA +KD L R+ K+ ++L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N N G T LH A + LI GA+V + Q PLHRAAS + +++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLIE 157
Query: 106 LLLDNGADST-LKDSDGLTALDRSRKESHEKISQILLERFS 145
LL G + +D G T L + E H + +L+E++
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISR--GANVNAVTRAGQATPLHRAASAANEEIVT 105
+ PD++G+T H A N + L R ++N +T G T LH A E+
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG-VTCLHLAVGKKWFEVSQ 124
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L++NGA +KD L R+ K+ ++L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
PN+ D +G + +H AAR+ +L+ GA+VNA+ G + P+H A + +V+
Sbjct: 67 PNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG-SLPIHLAIREGHSSVVSF 125
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L +D +D+ GLT L+ +R+ + + IL
Sbjct: 126 LAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
PN+ D +G + +H AAR+ +L+ GA+VNA+ G + P+H A + +V+
Sbjct: 69 PNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG-SLPIHLAIREGHSSVVSF 127
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L +D +D+ GLT L+ +R+ + + IL
Sbjct: 128 LAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G TAL + A + LL GA+++ G T LH AA E+V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 106 LLLDNGADSTLKDSDGLTALDRSRK 130
L++ GAD ++D GLTAL+ +R+
Sbjct: 129 ALVELGADIEVEDERGLTALELARE 153
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
+P + N+ G + LH AA + LL+ GAN A A QA PLH A
Sbjct: 72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQG 130
Query: 100 NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+ ++V LLD+ A KD G T L + H ++ +LL+
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ 173
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 38 GHLPI--CSVD----PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH + C +D PN D +G T L YA + + LL+ GA++NA G T
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN-TA 188
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LH A + +V LLL +GA + + TA+D + + S KI ++L
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELL 235
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
A ++ + + L+ GANVN G TPLH A + E+IV LLL +GAD L+ +
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 121 GLT 123
G T
Sbjct: 92 GAT 94
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN---------AVTRAGQATPLHRAA 96
D N D G+TA AA L RGANVN R G AT L AA
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 97 SAANEEIVTLLLDN-GADSTLKDSDG----LTALDRSRKESHEKISQILLERFSDL 147
+ E++ +LLD GAD D+ G + AL S E I+ +LL+ +D+
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 232
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 53 AGYTALHYAARSNNKPIC-LLLISRGANVNAVTRAGQATPLHRAASAAN---EEIVTLLL 108
G TAL AA + + +LL GA+VNA G+ +H S+ + E I LLL
Sbjct: 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 226
Query: 109 DNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
D+GAD ++ G T L + ++ H + Q LLE+
Sbjct: 227 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 50 PDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLD 109
+ G+T LH A + + + I LL+ GA+ + + ATP AA A + +++ L L
Sbjct: 55 EEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAGSVKLLKLFLS 113
Query: 110 NGADSTLKDSDGLTAL 125
GAD D G TA
Sbjct: 114 KGADVNECDFYGFTAF 129
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 36 PPGHLPICSV-------DPNIPDNAGYTALHYAARSNN----KPICLLLISRGANVNAVT 84
GH+ + + D N DN G AL +A S++ + I LL+ GA+VN
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 236
Query: 85 RAGQATPLHRAASAANEEIVTLLLDNG-ADSTLKDSDGLTALDRSRKESHEKISQILLER 143
G+ TPL A + +V LL+ + DSDG TAL + + +KI+++L +R
Sbjct: 237 ERGK-TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP + G T AA + + + L +S+GA+VN G T AA + +
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYG-FTAFMEAAVYGKVKALK 142
Query: 106 LLLDNGADSTLK-----DSD-----GLTALDRSRKESHEKISQILLERFS 145
L GA+ L+ D + G TAL + ++ H ++ +ILL+
Sbjct: 143 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D +G T L ++ + L+ GANVN G+ TPL A+ EIV L
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVASKYGRSEIVKKL 153
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+ GAD + +D GLTA +R +++ +I E
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 50 PDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLD 109
D G TAL +A ++N I L+S+G+NVN +G+ TPL + E+ LL+
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGYSEMSYFLLE 122
Query: 110 NGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+GA+ ++ +G T L + K +I + LLE +D+
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
A ++ + + L+ GANVN G TPLH A + E+IV LLL +GAD L+ +
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 121 GLT 123
G T
Sbjct: 72 GAT 74
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN---------AVTRAGQATPLHRAA 96
D N D G+TA AA L RGANVN R G AT L AA
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 97 SAANEEIVTLLLDN-GADSTLKDSDG----LTALDRSRKESHEKISQILLERFSDL 147
+ E++ +LLD GAD D+ G + AL S E I+ +LL+ +D+
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 53 AGYTALHYAARSNNKPIC-LLLISRGANVNAVTRAGQATPLHRAASAAN---EEIVTLLL 108
G TAL AA + + +LL GA+VNA G+ +H S+ + E I LLL
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 109 DNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
D+GAD ++ G T L + ++ H + Q LLE+
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 50 PDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLD 109
+ G+T LH A + + + I LL+ GA+ + + ATP AA A + +++ L L
Sbjct: 35 EEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 110 NGADSTLKDSDGLTAL 125
GAD D G TA
Sbjct: 94 KGADVNECDFYGFTAF 109
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 36 PPGHLPICSV-------DPNIPDNAGYTALHYAARSNN----KPICLLLISRGANVNAVT 84
GH+ + + D N DN G AL +A S++ + I LL+ GA+VN
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216
Query: 85 RAGQATPLHRAASAANEEIVTLLLDNG-ADSTLKDSDGLTALDRSRKESHEKISQILLER 143
G+ TPL A + +V LL+ + DSDG TAL + + +KI+++L +R
Sbjct: 217 ERGK-TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP + G T AA + + + L +S+GA+VN G T AA + +
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG-FTAFMEAAVYGKVKALK 122
Query: 106 LLLDNGADSTLK-----DSD-----GLTALDRSRKESHEKISQILLERFS 145
L GA+ L+ D + G TAL + ++ H ++ +ILL+
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 54 GYTALHYAARSNNKPICLLLI-SRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
G TALHYAA+ +N PI L+ +G+N + G+ TP+ AA E+V L+ GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK-TPIXLAAQEGRIEVVXYLIQQGA 337
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQIL 140
D+ TA ++ +H I I
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 47/175 (26%)
Query: 21 EHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAA------------------ 62
E+ PL + +L R +L DP I + + +ALH AA
Sbjct: 166 ENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLK 225
Query: 63 -------RSNNKPICL--------------LLISRGANVNAVTRAGQ-------ATPLHR 94
R+ + + LL+ +GA V+ A + T LH
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
Query: 95 AASAANEEIVTLLL-DNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
AA +N IV L+ + G++ +D DG T + + +E ++ L+++ + ++
Sbjct: 286 AAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 94 RAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
R + ++IV LL++NGAD ++KD+ G TA+D + ++ + +IS+IL
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D N + G TALH A +N + L+ GAN+N G PLH AAS +I
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCGYLDI 121
Query: 104 VTLLLDNGADSTLKDSDGLTALD 126
L+ GA +S+G T LD
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLD 144
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
+G TALH AA + LLI +VN G TPLH AA EE +L++N
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEACRILVENLC 256
Query: 113 DSTLKDSDGLTALD 126
D + G TA D
Sbjct: 257 DMEAVNKVGQTAFD 270
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 54/161 (33%), Gaps = 59/161 (36%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANV------------------------NAV 83
N PDN G+ LH AA I LIS+GA+V N V
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 84 TRAG-----------------------------------QATPLHRAASAANEEIVTLLL 108
R G T LH AA+ E++ LL+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 109 DNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
D +KD DG T L + E+ +IL+E D++
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D NI D G+T LH AA + C +L+ ++ AV + GQ A A+E+I+
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT-----AFDVADEDILG 278
Query: 106 LL 107
L
Sbjct: 279 YL 280
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
A S + L L+ RGA++N G T LH+A N ++V L++NGA+ D++
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDG-LTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 121 GLTAL 125
G L
Sbjct: 106 GWIPL 110
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 95 AASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
A S+ + E V LL+ GAD + DGLTAL ++ + + + + L+E +++
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G+T LH A+ I LL+S GA+VNA T LH A N ++V+LLL GAD
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 114 STLKDSDGLT----ALDRSRKESHEKISQILLERFSDL 147
G + R +++ Q+ LE L
Sbjct: 174 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 211
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
Q TPLH A EI LL G D L+D G T L
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 79
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G+T L +AA + L+ GA+ + + G+ + L A S +IV +L
Sbjct: 28 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKML 86
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LD G D D +G T L + +H K ++LLE +D
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP + +AL A I +L+ G +VN G TPL A + + V
Sbjct: 59 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVK 117
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
+LL++GAD T++ G ++D + + + Q++ L N
Sbjct: 118 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 162
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
C VD N D G T L YA N+ +L+ GA+ T +G
Sbjct: 89 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G+T L +AA + L+ GA+ + + G+ + L A S +IV +L
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKML 88
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LD G D D +G T L + +H K ++LLE +D
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP + +AL A I +L+ G +VN G TPL A + + V
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVK 119
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
+LL++GAD T++ G ++D + + + Q++ L NI
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
C VD N D G T L YA N+ +L+ GA+ T +G
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G+T L +AA + L+ GA+ + + G+ + L A S +IV +L
Sbjct: 46 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKML 104
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LD G D D +G T L + +H K ++LLE +D
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP + +AL A I +L+ G +VN G TPL A + + V
Sbjct: 77 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVK 135
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
+LL++GAD T++ G ++D + + + Q++ L NI
Sbjct: 136 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 181
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
C VD N D G T L YA N+ +L+ GA+ T +G
Sbjct: 107 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
L D N DN+G TALH+AA NN +L+ AN +A + TPL AA
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE-TPLFLAAREG 195
Query: 100 NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+ E LLDN A+ + D D + + H I ++L E
Sbjct: 196 SYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T L AAR + + LI+ A++NA +G+ T LH AA+ N E V +LL + A+
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGK-TALHWAAAVNNTEAVNILLMHHAN 176
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLERFSD 146
+D T L + +E + S+ LL+ F++
Sbjct: 177 RDAQDDKDETPLFLAAREGSYEASKALLDNFAN 209
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPIC-LLLISRGANVNAVTRAGQATPLHRAASAANE 101
D N DN G T LH A ++ + +LL +R N+NA G TPL AA A E
Sbjct: 73 AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG-TTPLILAARLAIE 131
Query: 102 EIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
+V L+ AD D+ G TAL + ++ + ILL
Sbjct: 132 GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 73 LISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKES 132
L+++GA +NA T LH AA A + LLD GAD+ +D+ G T L +
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 95
Query: 133 HEKISQILL 141
+ QILL
Sbjct: 96 AMGVFQILL 104
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
D G T+LH AAR L+ GA+ N+ G+ TPLH A +A + +LL N
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR-TPLHAAVAADAMGVFQILLRN 106
Query: 111 GA 112
A
Sbjct: 107 RA 108
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 14/85 (16%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNA-------------VTRAGQATPLHRAASAAN 100
G TALH A + N + L++RGA+V+A + G+ PL AA +
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE-HPLSFAACVGS 133
Query: 101 EEIVTLLLDNGADSTLKDSDGLTAL 125
EEIV LL+++GAD +DS G T L
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G+T LH A+ I LL+S GA+VNA T LH A N ++V+LLL GAD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
Q TPLH A EI LL G D L+D G T L
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
PN+ D +G + +H AAR+ +L+ GA+VN G A P+H A + +V+
Sbjct: 67 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG-ALPIHLAVQEGHTAVVSF 125
Query: 107 LLDNGADSTL--KDSDGLTALDRSRKESHEKISQIL 140
L A+S L +D+ GLT L+ + + + + IL
Sbjct: 126 L---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
PN+ D +G + +H AAR+ +L+ GA+VN G A P+H A + +V+
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG-ALPIHLAVQEGHTAVVSF 119
Query: 107 LLDNGADSTL--KDSDGLTALDRSRKESHEKISQIL 140
L A+S L +D+ GLT L+ + + + + IL
Sbjct: 120 L---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N PD G+T L +A+ L+ GA+ + + + + + L A++ +IV LL
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE-RESALSLASTGGYTDIVGLL 88
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
L+ D + D +G T L + + +H K + LL R +DL T
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
DP+I +AL A+ I LL+ R ++N G TPL A + +
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG-GTPLLYAVRGNHVK 116
Query: 103 IVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
V LL GAD T + G T +D + + K+ Q++
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 18 ILPEHIPLTIILLTTGRYPP--GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLIS 75
IL + + L +TG Y G L VD NI D G T L YA R N+ L++
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEI 103
RGA++ +G TP+ A + ++
Sbjct: 124 RGADLTTEADSGY-TPMDLAVALGYRKV 150
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
+I +N T LH A + + LL++ GA+ A+ R GQ T H A + + L
Sbjct: 40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLRAL 98
Query: 108 LDNGADSTL----KDSDGLTALDRSRKESHEKISQILLERFSDL 147
LD+ A TL ++ DGLTAL + ++ Q+LLER +D+
Sbjct: 99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G TALH A + + LL+ RGA+++AV +PL A + +V LLL +GA+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 114 STLKDSDGLTAL 125
+ G +AL
Sbjct: 176 VNAQMYSGSSAL 187
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
+G + L +A +N+ + LL+ GANVNA +G ++ LH A+ +V L+ +GA
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG-SSALHSASGRGLLPLVRTLVRSGA 207
Query: 113 DSTLKDSDGLTAL--DRSRK 130
DS+LK+ T L RSR+
Sbjct: 208 DSSLKNCHNDTPLMVARSRR 227
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
DNA T L A +N+ C L+ GANVN AG+ PLH A + + L L
Sbjct: 234 DNA--TPLIQATAANSLLACEFLLQNGANVNQADSAGRG-PLHHATILGHTGLACLFLKR 290
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQIL 140
GAD +DS+G L + + ++ I +L
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 74 ISRGANVNAVTRAGQ--ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
++ GA+VN V GQ ATPL +A +A + LL NGA+ DS G L +
Sbjct: 220 LAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 132 SHEKISQILLERFSDL 147
H ++ + L+R +DL
Sbjct: 279 GHTGLACLFLKRGADL 294
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG LH+A + + L + RGA++ A G+ PL A AN +IVTLL
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR-DPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
DNA T L A +N+ C L+ GANVN AG+ PLH A + + L L
Sbjct: 234 DNA--TPLIQATAANSLLACEFLLQNGANVNQADSAGRG-PLHHATILGHTGLACLFLKR 290
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQIL 140
GAD +DS+G L + + ++ I +L
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 74 ISRGANVNAVTRAGQ--ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
++ GA+VN V GQ ATPL +A +A + LL NGA+ DS G L +
Sbjct: 220 LAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 132 SHEKISQILLERFSDL 147
H ++ + L+R +DL
Sbjct: 279 GHTGLACLFLKRGADL 294
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG LH+A + + L + RGA++ A G+ PL A AN +IVTLL
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR-DPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
DNA T L A +N+ C L+ GANVN AG+ PLH A + + L L
Sbjct: 234 DNA--TPLIQATAANSLLACEFLLQNGANVNQADSAGRG-PLHHATILGHTGLACLFLKR 290
Query: 111 GADSTLKDSDG 121
GAD +DS+G
Sbjct: 291 GADLGARDSEG 301
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D+AG LH+A + + L + RGA++ A G+ PL A AN +IVTLL
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR-DPLTIAMETANADIVTLL 320
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 74 ISRGANVNAVTRAGQ--ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
++ GA+VN V GQ ATPL +A +A + LL NGA+ DS G L +
Sbjct: 220 LAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 132 SHEKISQILLERFSDL 147
H ++ + L+R +DL
Sbjct: 279 GHTGLACLFLKRGADL 294
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 42 ICSVDPNIPDNAGYTALHYAA----RSNNKPICLLLISRGANVNA-VTRAGQATPLHRAA 96
+C VD + AGY+ + A ++ + +L + R N+NA ++AGQ T L A
Sbjct: 135 VCKVDKQ--NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ-TALMLAV 191
Query: 97 SAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
S ++V LL AD ++D DG TAL + + H++I+ +LL
Sbjct: 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 52 NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN- 110
AG TAL A + L++ A+VN G +T L A ++EI LLL
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG-STALMCACEHGHKEIAGLLLAVP 239
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLERFS 145
D +L D DG TAL + +I+ +L R +
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N PD G+T L +A+ L+ GA+ + + + + + L A++ +IV LL
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE-RESALSLASTGGYTDIVGLL 88
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
L+ D + D +G T L + +H K + LL R +DL T
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTE 131
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
DP+I +AL A+ I LL+ R ++N G TPL A + +
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG-GTPLLYAVHGNHVK 116
Query: 103 IVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
V LL GAD T + G T +D + + K+ Q++
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 29 LLTTGRYPP--GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRA 86
L +TG Y G L VD NI D G T L YA N+ L++RGA++ +
Sbjct: 75 LASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADS 134
Query: 87 GQATPLHRAASAANEEI 103
G TP+ A + ++
Sbjct: 135 GY-TPMDLAVALGYRKV 150
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 42 ICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE 101
+ S D D G++A +YA NN + L++ GA N + PLH+AA+ +
Sbjct: 19 LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDT 75
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
+IV +LL +G D + D G TAL
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTAL 99
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 10 NDLPTCKPILPEHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPI 69
N+ P + E + ILL +G +D + D+ G TAL+YA S N
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSG-----------LDDSQFDDKGNTALYYAVDSGNXQT 110
Query: 70 CLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLL 108
L + + + + G T + A + IV+ L
Sbjct: 111 VKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFL 149
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 56 TALHYAARSNNKP---ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
TALH A RS ++ I L+ N++ T G +T LH N E + LLL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG-STALHYCCLTDNAECLKLLLRGKA 229
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLERFS 145
+ + G T LD +++ HE ++L + S
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 54 GYTALHYAARSNNKPICLLLISRG-ANVNAVTRAGQATPLHRAASAANEEIVTLL 107
G TALHY ++N CL L+ RG A++ +G+ TPL A +E LL
Sbjct: 205 GSTALHYCCLTDNAE-CLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHCEELL 257
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G TAL + N I L+ RGAN + R G A +H AA A + + LL+N AD
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLENQAD 95
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
++D++G L + KE H ++ + L++
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGA-NVNAVTRAGQATPLHRAASAANEE 102
D NI DN G LH AA+ + + L+ A NV G T A E
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNE 151
Query: 103 IVTLLLDNGA 112
+V+L+ NGA
Sbjct: 152 VVSLMQANGA 161
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G+T LH A + + LL GA++N TPLH A A ++ LLL GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 114 STLKDSDGLTAL 125
T + G T L
Sbjct: 218 PTARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G+T LH A + + LL GA++N TPLH A A ++ LLL GAD
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 114 STLKDSDGLTAL 125
T + G T L
Sbjct: 218 PTARMYGGRTPL 229
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLI-SRGANVNAVTRAGQATPLHRAASAANE 101
S D NI DN G T LH A ++ + + +LI +R +++A G TPL AA A E
Sbjct: 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVE 105
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
++ L+++ AD D G +AL
Sbjct: 106 GMLEDLINSHADVNAVDDLGKSAL 129
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G TALH AAR + L+ A+ N G+ TPLH A SA + + +L
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 77
Query: 108 LDNGA-DSTLKDSDGLTAL 125
+ N A D + DG T L
Sbjct: 78 IRNRATDLDARMHDGTTPL 96
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + + TPL AA + E
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 175
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LLD+ A+ + D D +++ H I ++L E
Sbjct: 176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 73 LISRGANV-NAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
I +GA++ N R G+ T LH AA + + LL+ AD+ ++D+ G T L +
Sbjct: 10 FIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 68
Query: 132 SHEKISQILLE-RFSDLQTNI 151
+ + QIL+ R +DL +
Sbjct: 69 DAQGVFQILIRNRATDLDARM 89
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLI-SRGANVNAVTRAGQATPLHRAASAANE 101
S D NI DN G T LH A ++ + + +LI +R +++A G TPL AA A E
Sbjct: 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVE 137
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
++ L+++ AD D G +AL
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSAL 161
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G TALH AAR + L+ A+ N G+ TPLH A SA + + +L
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 108 LDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+ N A D + DG T L + + + E + + L+ +D+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + + TPL AA + E
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 207
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+LLD+ A+ + D D +++ H I ++L
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 73 LISRGANV-NAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
I +GA++ N R G+ T LH AA + + LL+ AD+ ++D+ G T L +
Sbjct: 42 FIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100
Query: 132 SHEKISQILLE-RFSDLQTNI 151
+ + QIL+ R +DL +
Sbjct: 101 DAQGVFQILIRNRATDLDARM 121
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLI-SRGANVNAVTRAGQATPLHRAASAANE 101
S D NI DN G T LH A ++ + + +LI +R +++A G TPL AA A E
Sbjct: 80 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVE 138
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
++ L+++ AD D G +AL
Sbjct: 139 GMLEDLINSHADVNAVDDLGKSAL 162
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G TALH AAR + L+ A+ N G+ TPLH A SA + + +L
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 110
Query: 108 LDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+ N A D + DG T L + + + E + + L+ +D+
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + + TPL AA + E
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 208
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LLD+ A+ + D D +++ H I ++L E
Sbjct: 209 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 245
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 73 LISRGANV-NAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
I +GA++ N R G+ T LH AA + + LL+ AD+ ++D+ G T L +
Sbjct: 43 FIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 101
Query: 132 SHEKISQILLE-RFSDLQTNI 151
+ + QIL+ R +DL +
Sbjct: 102 DAQGVFQILIRNRATDLDARM 122
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISR-GANVNAVTRAGQATPLHRAASAANEEI 103
V N D AG TAL++A +K I L ++ +N + G T LH AA +I
Sbjct: 97 VGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGD-TALHAAAWKGYADI 155
Query: 104 VTLLLDNGADSTLKDSDGLTALD 126
V LLL GA + L++ + A D
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFD 178
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLI-SRGANVNAVTRAGQATPLHRAASAANE 101
S D NI DN G T LH A ++ + + +LI +R +++A G TPL AA A E
Sbjct: 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVE 137
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
++ L+++ AD D G +AL
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSAL 161
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G TALH AA + L+ A+ N G+ TPLH A SA + + +L
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQIL 109
Query: 108 LDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
+ N A D + DG T L + + + E + + L+ +D+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + + TPL AA + E
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAK 207
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+LLD+ A+ + D D +++ H I ++L
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 73 LISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKES 132
I +GA+++ T AT LH AA+ + + LL+ AD+ ++D+ G T L +
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 133 HEKISQILLE-RFSDLQTNI 151
+ + QIL+ R +DL +
Sbjct: 102 AQGVFQILIRNRATDLDARM 121
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G TAL + N I L+ RGAN + R G A +H AA A + + LL+ AD
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAV-IHDAARAGQLDTLQTLLEFQAD 95
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
++D++G L + KE H ++ + L++
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
L + +P++ D G+ +H AAR+ L+ A+VN G PLH AA
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEG 114
Query: 100 NEEIVTLLLDNGADST-LKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
+ +V L+ + A + ++ G TA D +R ++ ++ + TN+
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G TAL + N I L+ RGAN + R G A +H AA A + + LL+ AD
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGNAV-IHDAARAGFLDTLQTLLEFQAD 95
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
++D++G L + KE H ++ + L++
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
L + +P++ D G +H AAR+ L+ A+VN G PLH AA
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEG 114
Query: 100 NEEIVTLLLDNGADST-LKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
+ +V L+ + A + ++ G TA D +R ++ ++ + TN+
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 58 LHYAARSNNK---PICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADS 114
LH A + N+ P+ +I G +++A G T LH AA + + LLL A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRALV 252
Query: 115 TLKDSDGLTALDRSRKESHEKISQIL 140
+ G TALD +RK+ H++ ++L
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELL 278
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G TAL + N I L+ RGAN + R G A +H AA A + + LL+ AD
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQAD 95
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
++D++G L + KE H ++ + L++
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
L + +P++ D G+ +H AAR+ L+ A+VN G PLH AA
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEG 114
Query: 100 NEEIVTLLLDNGADST-LKDSDGLTALDRSRKESHEKISQIL 140
+ +V L+ + A + ++ G TA D +R ++ ++
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGA-NVNAVTRAGQATPLHRAASAANEE 102
D NI DN G LH AA+ + + L+ A NV G T A E
Sbjct: 93 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNE 151
Query: 103 IVTLLLDNGA 112
+V+L+ NGA
Sbjct: 152 VVSLMQANGA 161
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 58 LHYAARSNNK---PICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADS 114
LH A + N+ P+ +I G +++A G T LH AA + + LLL A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRALV 233
Query: 115 TLKDSDGLTALDRSRKESHEKISQIL 140
+ G TALD +RK+ H++ ++L
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELL 259
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G TAL + N I L+ RGAN + R G A +H AA A + + LL+ AD
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQAD 95
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
++D++G L + KE H ++ + L++
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 40 LPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA 99
L + +P++ D G+ +H AAR+ L+ A+VN G PLH AA
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEG 114
Query: 100 NEEIVTLLLDNGADST-LKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
+ +V L+ + A + ++ G TA D +R ++ ++ + TN+
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + + TPL AA + E
Sbjct: 40 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNKEETPLFLAAREGSYETAK 98
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LLD+ A+ + D D +++ H I ++L E
Sbjct: 99 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T L AAR + + LI+ A+VNAV G+ + LH AA+ N + +LL NGA+
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGAN 73
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLERFS 145
++++ T L + +E + +++LL+ F+
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFA 105
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G TALH AAR + L+ A+ G+ TPLH A SA + + +L
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGR-TPLHAAVSADAQGVFQIL 74
Query: 108 LDNGA-DSTLKDSDGLTAL 125
L N A D + DG T L
Sbjct: 75 LRNRATDLDARMHDGTTPL 93
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPIC-LLLISRGANVNAVTRAGQATPLHRAASAANE 101
S D I DN G T LH A ++ + + +LL +R +++A G TPL AA A E
Sbjct: 44 ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDG-TTPLILAARLALE 102
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
++ L+++ AD D G +AL
Sbjct: 103 GMLEDLINSHADVNAVDDLGKSAL 126
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + + TPL AA + E
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNKEETPLFLAAREGSYETAK 172
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LLD+ A+ + D D +++ H I ++L E
Sbjct: 173 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T L AAR + + LI+ A+VNAV G+ + LH AA+ N + +LL NGA+
Sbjct: 89 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGAN 147
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLERFSD 146
++++ T L + +E + +++LL+ F++
Sbjct: 148 KDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 73 LISRGANV-NAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
I +GA++ N R G+ T LH AA + + LL+ AD+ ++D+ G T L +
Sbjct: 7 FIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSA 65
Query: 132 SHEKISQILLE-RFSDLQTNI 151
+ + QILL R +DL +
Sbjct: 66 DAQGVFQILLRNRATDLDARM 86
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNA-----VTRAGQAT-------PLHRAASAANE 101
G++ALH A + LL+ GANV+A + GQ T PL AA
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 102 EIVTLLLDN---GADSTLKDSDGLTAL 125
++V+ LL+N A DS G T L
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVL 181
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVT----------RAG---QATPLHRAASAAN 100
G TALH A N + LL+ GA+V A R G PL AA
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 101 EEIVTLLLDNG---ADSTLKDSDGLTAL 125
IV LL N AD + +DS G T L
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVL 188
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRA-------------GQATPLHRAASAAN 100
G TALH A K LL+ +GA+V+A R PL AA
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 101 EEIVTLLLDNG---ADSTLKDSDGLTAL 125
IV L +NG AD +DS G T L
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVL 180
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution:
Implications For A Large Conformational Change During
Catalysis
Length = 316
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
AGYTA YAAR+N +P+ + + +G + T
Sbjct: 16 AGYTAAVYAARANLQPVLITGMEKGGQLTTTTE 48
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
AGYTA YAAR+N +P+ + + +G + T
Sbjct: 16 AGYTAAVYAARANLQPVLITGMEKGGQLTTTTE 48
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
AGYTA YAAR+N +P+ + + +G + T
Sbjct: 16 AGYTAAVYAARANLQPVLITGMEKGGQLTTTTE 48
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
AGYTA YAAR+N +P+ + + +G + T
Sbjct: 16 AGYTAAVYAARANLQPVLITGMEKGGQLTTTTE 48
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution:
Implications For A Large Conformational Change During
Catalysis
Length = 316
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
AGYTA YAAR+N +P+ + + +G + T
Sbjct: 16 AGYTAAVYAARANLQPVLITGMEKGGQLTTTTE 48
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRA-------------GQATPLHRAASAAN 100
G TALH A K LL+++GA+V+A R PL AA
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 150
Query: 101 EEIVTLLLDN---GADSTLKDSDGLTAL 125
IV L +N AD +DS G T L
Sbjct: 151 PHIVNYLTENPHKKADMRRQDSRGNTVL 178
>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
Length = 257
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 125 LDRSRKESHEKISQILLERFSDLQTNIA 152
LD S+ ES E+ S+ +LERF D+ +A
Sbjct: 81 LDVSKAESVEEFSKKVLERFGDVDVVVA 108
>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon
Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp
Length = 235
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 125 LDRSRKESHEKISQILLERFSDLQTNIA 152
LD S+ ES E+ S+ +LERF D+ +A
Sbjct: 59 LDVSKAESVEEFSKKVLERFGDVDVVVA 86
>pdb|2V6I|A Chain A, Kokobera Virus Helicase
Length = 431
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 31 TTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLL-LISRGANVNA-VTRAGQ 88
TT +PP + PI + IPD A + + + + + + I +GA + + +AG+
Sbjct: 137 TTEAFPPSNSPIIDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGK 196
>pdb|2V6J|A Chain A, Kokobera Virus Helicase: Mutant Met47thr
Length = 431
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 31 TTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLL-LISRGANVNA-VTRAGQ 88
TT +PP + PI + IPD A + + + + + + I +GA + + +AG+
Sbjct: 137 TTEAFPPSNSPIIDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGK 196
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVN--AVTRAGQA----------TPLHRAASAANE 101
G++ALH A + LL+ GA+V+ A R Q PL AA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 102 EIVTLLLDN 110
++VT LL+N
Sbjct: 163 DVVTYLLEN 171
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVN--AVTRAGQA----------TPLHRAASAANE 101
G++ALH A + LL+ GA+V+ A R Q PL AA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 102 EIVTLLLDN 110
++VT LL+N
Sbjct: 150 DVVTYLLEN 158
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRK 130
TPLH S AN E+V L+ +G++ D+ G + L ++ K
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,436,669
Number of Sequences: 62578
Number of extensions: 172215
Number of successful extensions: 1129
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 396
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)