RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3338
(152 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 97.1 bits (242), Expect = 8e-27
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N DN G T LH AA++ + I LL+ +GA+VNA + G TPLH AA N ++V
Sbjct: 31 ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGN-TPLHLAARNGNLDVV 89
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
LLL +GAD +D DG T L + K H ++ ++LL
Sbjct: 90 KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 90.1 bits (224), Expect = 4e-24
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N D G T LH AA + + + LL+ GA+VNA G+ TPLH AA + EIV LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR-TPLHLAAKNGHLEIVKLL 59
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
L+ GAD +D DG T L + + + + ++LL+ +D+
Sbjct: 60 LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV 99
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 74.6 bits (184), Expect = 2e-18
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 58 LHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLK 117
LH AA++ N + LL+ +GA+VN T LH AA N EIV LLL++GAD K
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 118 DSDGLTALDRSRKESHEKISQILLERFSDL 147
D DG TAL + + + +I ++LLE +D+
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADI 87
Score = 68.4 bits (168), Expect = 5e-16
Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
D N+ D TALH AAR+ N I LL+ GA+VNA + G T LH AA N E
Sbjct: 19 KGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN-TALHLAARNGNLE 75
Query: 103 IVTLLLDNGADSTLKD 118
IV LLL++GAD LKD
Sbjct: 76 IVKLLLEHGADINLKD 91
Score = 49.2 bits (118), Expect = 1e-08
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAV 83
G+L I D N D G TALH AAR+ N I LL+ GA++N
Sbjct: 39 GNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 65.8 bits (161), Expect = 2e-13
Identities = 32/69 (46%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
V NI D G+T LHYA +NN L+ GAN N V + G TPLH A N+EI
Sbjct: 183 VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD-TPLHIAILNNNKEIF 241
Query: 105 TLLLDNGAD 113
LLL+NG
Sbjct: 242 KLLLNNGPS 250
Score = 64.3 bits (157), Expect = 7e-13
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 46 DPNIPDNAGYTALHYAARSN--NKPICLLLISRGANVNAVTRA----------------G 87
+ NI ++ G LH SN + I LLI +G ++NA R G
Sbjct: 133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYG 192
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
TPLH A N E V LLD GA+ L + G T L + ++++I ++LL +
Sbjct: 193 F-TPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251
Query: 148 QT 149
+T
Sbjct: 252 KT 253
Score = 55.8 bits (135), Expect = 6e-10
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 44 SVDPNIPDNAGYTALHYAAR-----SNNKPICLLLISRGANVNAVTRAGQATPLHRAASA 98
D N T LHY + ++ K I LL+ GANVNA G TPL A S
Sbjct: 58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG-ITPLLYAISK 116
Query: 99 --ANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHE--KISQILLERFSDL 147
+ IV LLDNGA+ +K+SDG L + + KI ++L+++ D+
Sbjct: 117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169
Score = 40.8 bits (96), Expect = 1e-04
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAV 83
+PN+ + G T LH A +NNK I LL++ G ++ +
Sbjct: 214 LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI 254
Score = 31.9 bits (73), Expect = 0.088
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL-----DRSRKESHEKISQILLER 143
PL+ A A N ++V +LLDNGAD + T L + ++I ++LLE
Sbjct: 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 62.6 bits (152), Expect = 3e-12
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 46 DPNIPD-NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N+ D + G TALHYA + ++ + LL+S GANVN + +PLH A N+ IV
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK-TNNSPLHHAVKHYNKPIV 217
Query: 105 TLLLDNGADSTLKDSDGLTALDRS--RKESHEKISQILLERFSDL 147
+LL+NGA + +D G T L S + ++ I ++LLE D+
Sbjct: 218 HILLENGASTDARDKCGNTPLHISVGYCKDYD-ILKLLLEHGVDV 261
Score = 57.2 bits (138), Expect = 2e-10
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA-NEEIV 104
+ NIPD + LH+A + NKPI +L+ GA+ +A + G TPLH + + +I+
Sbjct: 193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGN-TPLHISVGYCKDYDIL 251
Query: 105 TLLLDNGADSTLKDS-DGLTALDRSRKESHEKISQILLERFSD 146
LLL++G D K GLTAL S K E+ ++LLE +D
Sbjct: 252 KLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGAD 292
Score = 43.7 bits (103), Expect = 9e-06
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 69 ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRS 128
I LL+S GA++N R T LH A ++ + LLL GA+ + D + L +
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208
Query: 129 RKESHEKISQILLE 142
K ++ I ILLE
Sbjct: 209 VKHYNKPIVHILLE 222
Score = 43.3 bits (102), Expect = 1e-05
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 48 NIPDNAGYTALHYA-ARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
+ D G T LH + + I LL+ G +VNA + T LH +S +E + L
Sbjct: 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH--SSIKSERKLKL 285
Query: 107 LLDNGADSTLKDSDGLTAL 125
LL+ GAD +S LT L
Sbjct: 286 LLEYGADINSLNSYKLTPL 304
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 58 LHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAAN 100
LH A + N + L++RG NVN TPLH N
Sbjct: 41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRD-LTPLHIICKEPN 82
Score = 28.3 bits (63), Expect = 1.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
PLH+A A N ++V LL G + D LT L
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL 74
Score = 27.2 bits (60), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 102 EIVTLLLDNGADSTLKDSDGL-TALDRSRKESHEKISQILL 141
EI LLL GAD +KD TAL + + ++++++LL
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL 188
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 59.1 bits (142), Expect = 3e-11
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICL-----LLISRGANVNAVTRAG--QATPLHRAA 96
D N D G T LH AA + N P LL+ GA+++ TPLH AA
Sbjct: 96 GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Query: 97 SAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ +IV LLL+ GAD ++S G+TALD + K ++ ++LL++
Sbjct: 156 LNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK 202
Score = 51.4 bits (122), Expect = 2e-08
Identities = 40/111 (36%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE-----E 102
D G LH AA + I LL++ GA+VNA G TPLH AA N E
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGD-TPLHLAALNGNPPEGNIE 125
Query: 103 IVTLLLDNGADS---TLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
+ LLL+ GAD L+D DG T L + I ++LLE +D +
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR 176
Score = 48.7 bits (115), Expect = 1e-07
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 42 ICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE 101
N+ D G T LH+AA + + I LL+ GA+ N+ G T L AA
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV-TALDPAAKNGRI 193
Query: 102 EIVTLLLD 109
E+V LLLD
Sbjct: 194 ELVKLLLD 201
Score = 38.7 bits (89), Expect = 5e-04
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDR-----SRKESHEKISQILLERF 144
PLH AAS +++IV LLL +GAD KD+DG T L + E + +++++LLE
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134
Query: 145 SDLQTNI 151
+DL N
Sbjct: 135 ADLDVNN 141
Score = 27.1 bits (59), Expect = 3.9
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
DPN ++ G TAL AA++ + LL+ +G +++ + + + +
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNL 229
Query: 104 VTLLL 108
+L++
Sbjct: 230 TSLII 234
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 53.8 bits (130), Expect = 8e-11
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLL 108
G TALH AA S + L+ +G ++N G T LH AA N E++ LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN-TALHIAAENGNLEVLKLLL 54
Score = 42.6 bits (101), Expect = 1e-06
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
T LH+AA + E+V LL+ G D D DG TAL + + + ++ ++LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 36.1 bits (84), Expect = 4e-04
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 38 GHLPIC------SVDPNIPDNAGYTALHYAARSNNKPICLLLI 74
G L + VD N D G TALH AA + N + LL+
Sbjct: 12 GRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 56.6 bits (137), Expect = 3e-10
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNK-PICLLLISRGANVNAVTRAGQATPLHRAAS--AANEE 102
D N P+ G+T LH + + LLI GA+VNA + G+ TPLH S N +
Sbjct: 75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGR-TPLHVYLSGFNINPK 133
Query: 103 IVTLLLDNGADSTLKDSDGLTALD 126
++ LLL GAD D G+T L
Sbjct: 134 VIRLLLRKGADVNALDLYGMTPLA 157
Score = 52.7 bits (127), Expect = 7e-09
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPL--------HRAA 96
+ N + G T LHYAA NN C LI+ GA++NAV+ G TPL RA
Sbjct: 248 ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN-TPLSLMVRNNNGRAV 306
Query: 97 SAA 99
AA
Sbjct: 307 RAA 309
Score = 52.3 bits (126), Expect = 1e-08
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 46 DPNIPDNAGYTALHYAARSNNKP---ICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
D N G T LH +++ I LL+ GA+VNA R G TPLH A
Sbjct: 39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCG-FTPLHLYLYNATTL 97
Query: 103 -IVTLLLDNGADSTLKDSDGLTALDR--SRKESHEKISQILLERFSDL 147
++ LL+ GAD KD G T L S + K+ ++LL + +D+
Sbjct: 98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV 145
Score = 48.5 bits (116), Expect = 2e-07
Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 45 VDPNIPDNAGYTALHYAAR--SNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
DP D G T LH A S + + L L+ G ++NA R GQ TPLH AA N
Sbjct: 213 CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ-TPLHYAAVFNNPR 271
Query: 103 IVTLLLDNGADSTLKDSDGLTAL 125
L+ GAD SDG T L
Sbjct: 272 ACRRLIALGADINAVSSDGNTPL 294
Score = 47.3 bits (113), Expect = 6e-07
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 43 CSVDPNIPDNAGYTALH-YAARSN-NKPICLLLISRGANVNAVTRAGQATPLHR--AASA 98
D N D G T LH Y + N N + LL+ +GA+VNA+ G TPL +
Sbjct: 106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYG-MTPLAVLLKSRN 164
Query: 99 ANEEIVTLLLDNGADSTLKDSDGLTALD---RSRKESHEKISQIL 140
AN E++ LL+D GAD D + L +S K + +++
Sbjct: 165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELI 209
Score = 35.8 bits (83), Expect = 0.004
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLL--LISRGANVNAVTRAGQATPLHRAA--SAAN 100
D N D G T L +S N + LL LI GA+V AV + + LH
Sbjct: 143 ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR-SLLHHHLQSFKPR 201
Query: 101 EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
IV L+ G D D G T L S K S +L
Sbjct: 202 ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL 241
Score = 35.4 bits (82), Expect = 0.007
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 72 LLISRGANVNAVTRAGQATPLH---RAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
L++ GA+VN G+ TPLH +S ++IV LLL+ GAD + G T L
Sbjct: 32 RLLAAGADVNFRGEYGK-TPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPL 87
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 51.1 bits (122), Expect = 3e-08
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 31 TTGRYPPGHLPICSVD-------------PNIPDNAGYTALHYAARSNNKPICLLLISRG 77
T ++ P HL + D +I D G T L A + IC +L+ G
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191
Query: 78 ANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTL 116
AN++ + G L A +IV L + GAD +
Sbjct: 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230
Score = 41.9 bits (98), Expect = 4e-05
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T LH A I LLI+RGA+ + + + +PLH A + + + LL+D+ A
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
++D G T L + + I ++LL+
Sbjct: 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLD 189
Score = 38.4 bits (89), Expect = 7e-04
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP+IP+ ++ LH A + LLI A ++ G TPL A + + I
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG-CTPLIIAMAKGDIAICK 185
Query: 106 LLLDNGADSTLKDSDG-LTALDRSRKESHEKISQILLERFSD 146
+LLD+GA+ +G + AL + + + I ++ ++R +D
Sbjct: 186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227
Score = 33.4 bits (76), Expect = 0.035
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
++PN G + + A + + LL+ GA + V + LH A + + V
Sbjct: 26 INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEEGDVKAV 84
Query: 105 TLLLDNG--ADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LLD G AD DG+T L + I ++L+ R +D
Sbjct: 85 EELLDLGKFADDVFY-KDGMTPLHLATILKKLDIMKLLIARGAD 127
Score = 32.3 bits (73), Expect = 0.086
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 28 ILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
+L+ G P D PD + LH A + L+ G + V
Sbjct: 53 LLMKHGAIP---------DVKYPDIE--SELHDAVEEGDVKAVEELLDLGKFADDVFYKD 101
Query: 88 QATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
TPLH A +I+ LL+ GAD + ++D + L
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL 139
Score = 27.6 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 52 NAGYTALHYAARSNNKPICLLLISRGANVNAVT 84
N AL YA +N I L I RGA+ N +
Sbjct: 200 NGCVAALCYAIENNKIDIVRLFIKRGADCNIMF 232
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 46.2 bits (110), Expect = 8e-08
Identities = 25/54 (46%), Positives = 28/54 (51%)
Query: 73 LISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALD 126
L+ G T TPLH AA E+V LL G D L+DSDGLTALD
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 44.7 bits (106), Expect = 3e-07
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRA 95
+D N D G T LH AA+ + L+ G ++N G T L A
Sbjct: 6 PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL-TALDLA 56
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 49.8 bits (119), Expect = 8e-08
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Query: 41 PICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAA- 99
P+C++ NI D Y + I +LI GA++N G+ TPL+ S
Sbjct: 74 PLCTILSNIKD--------YKHMLD---IVKILIENGADINKKNSDGE-TPLYCLLSNGY 121
Query: 100 --NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHE---KISQILLERFSDLQT 149
N EI+ +++NGAD+TL D DG T L + +H +I ++LLE+ D+ T
Sbjct: 122 INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT 176
Score = 37.9 bits (88), Expect = 0.001
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+D N D G+ L+Y+ NN+ I L+ G ++N +T G T L A ++ I
Sbjct: 249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGN-TCLFTAFENESKFIF 307
Query: 105 TLLLD 109
+L+
Sbjct: 308 NSILN 312
Score = 26.7 bits (59), Expect = 6.3
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 57 ALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTL 116
+L Y + K I L I ++N V G PL+ + S N +I LL G D +
Sbjct: 229 SLLYDNKRFKKNI-LDFIFSYIDINQVDELG-FNPLYYSVSHNNRKIFEYLLQLGGDINI 286
Query: 117 KDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
G T L + + + I +L + + T
Sbjct: 287 ITELGNTCLFTAFENESKFIFNSILNKKPNKNT 319
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 45.2 bits (108), Expect = 1e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTR 85
G T LH AAR+ + + LL+ GA+VNA +
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 39.1 bits (92), Expect = 2e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKD 118
TPLH AA + E+V LLL+ GAD +D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 47.9 bits (114), Expect = 2e-07
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 66 NKPICLLLISRGANVNAVTRAGQATPLHRAAS---AANEEIVTLLLDNGADSTLKDSDGL 122
N I LI GA+VN TR + LH S EI+ +L+D+G+ T +D DG
Sbjct: 65 NVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK 124
Query: 123 TALDR 127
L
Sbjct: 125 NLLHM 129
Score = 27.9 bits (62), Expect = 1.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 90 TPLHRAASA--ANEEIVTLLLDNGADSTLK-DSDGLTALDRS---RKESHEKISQILLER 143
TP+ N EI+ L++NGAD K + L+AL K +I +IL++
Sbjct: 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS 112
Query: 144 FSDLQ 148
S +
Sbjct: 113 GSSIT 117
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 47.7 bits (113), Expect = 5e-07
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
C +D NI D T LHYA + + +L GA+VN G P+H A +
Sbjct: 113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG-CYPIHIAIKHNFFD 171
Query: 103 IVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
I+ LLL+ GA + +KD++G + L + + ++L++ + +
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216
Score = 47.3 bits (112), Expect = 6e-07
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D NI D+ G +H A + N I LL+ +GA N G+ +PLH AA + +
Sbjct: 149 DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE-SPLHNAAEYGDYACIK 207
Query: 106 LLLDNGADSTLKDSDGLTAL 125
LL+D+G K +G T L
Sbjct: 208 LLIDHGNHIMNKCKNGFTPL 227
Score = 40.7 bits (95), Expect = 9e-05
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 52 NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAAS-AANEEIVTLLLDN 110
G+T LH A N I LL+ + N + +TPLH A + + +I+ +LL +
Sbjct: 221 KNGFTPLHNAIIHNRSAIELLINNASINDQDID---GSTPLHHAINPPCDIDIIDILLYH 277
Query: 111 GADSTLKDSDGLTALDRSRK 130
AD ++KD+ G +D + K
Sbjct: 278 KADISIKDNKGENPIDTAFK 297
Score = 37.3 bits (86), Expect = 0.002
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
NI + T L A RS + I L I GA++N + PL A +I+ LL
Sbjct: 29 NISVDETTTPLIDAIRSGDAKIVELFIKHGADINHIN-TKIPHPLLTAIKIGAHDIIKLL 87
Query: 108 LDNGADSTL 116
+DNG D+++
Sbjct: 88 IDNGVDTSI 96
Score = 29.9 bits (67), Expect = 0.56
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 66 NKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTAL 125
K + ++ G +VN + T LH A + E + +L + GAD ++D +G +
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELK-TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161
Query: 126 DRSRKESHEKISQILLERFSDLQTN 150
+ K + I ++LLE+ +
Sbjct: 162 HIAIKHNFFDIIKLLLEKGAYANVK 186
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 46.8 bits (111), Expect = 8e-07
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 72 LLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKE 131
+L++ GA+ N G+ TPLH A + + ++V +LL+ GAD TL D DG T L+ + +
Sbjct: 100 ILLTGGADPNCRDYDGR-TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN 158
Query: 132 SHEKISQILL 141
++ Q+L
Sbjct: 159 GFREVVQLLS 168
Score = 34.1 bits (78), Expect = 0.020
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 28 ILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
ILLT G DPN D G T LH A + + + +L+ GA+ + + G
Sbjct: 100 ILLTGG-----------ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148
Query: 88 QATPLHRAASAANEEIVTLLL 108
+ TPL A E+V LL
Sbjct: 149 K-TPLELAEENGFREVVQLLS 168
Score = 26.8 bits (59), Expect = 5.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
+LL GAD +D DG T L + H ++ ++LLE +D
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD 140
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 45.1 bits (107), Expect = 4e-06
Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNA-------VTRAGQAT------PLHRAASAAN 100
G TALH AA N I LL+ RGA+V A V G + PL+ AA +
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187
Query: 101 EEIVTLLLDNGADSTLKDSDGLTAL 125
IV LL ++ AD DS G T L
Sbjct: 188 PSIVALLSEDPADILTADSLGNTLL 212
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 44.6 bits (105), Expect = 4e-06
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 42 ICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE 101
+ S D D G++AL+YA NN + L++ GA N + PLH+AA+ +
Sbjct: 18 LSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDT 74
Query: 102 EIVTLLLDNGADSTLKDSDGLTAL 125
+IV +LL +G D + D G TAL
Sbjct: 75 KIVKILLFSGMDDSQFDDKGNTAL 98
Score = 32.3 bits (73), Expect = 0.064
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 12/141 (8%)
Query: 10 NDLPTCKPILPEHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPI 69
N+ P + E + ILL +G +D + D+ G TAL+YA S N
Sbjct: 61 NEFPLHQAATLEDTKIVKILLFSG-----------MDDSQFDDKGNTALYYAVDSGNMQT 109
Query: 70 CLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSR 129
L + + + + G T + A + IV+ L ST + L+ + +
Sbjct: 110 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDLAILLSCIHITI 168
Query: 130 KESHEKISQILLERFSDLQTN 150
K H + +LL+ + TN
Sbjct: 169 KNGHVDMMILLLDYMTSTNTN 189
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 43.4 bits (102), Expect = 1e-05
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 45 VDPNIP----DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAAN 100
DP P +N+ L YA +N LLI GA+VN + TPL+ +
Sbjct: 57 ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGC 116
Query: 101 EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ + +LL GAD ++ +D +T ++ + + ++ ++ +
Sbjct: 117 LKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN 159
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 39.5 bits (93), Expect = 1e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNA 82
G T LH AAR+ N + LL+ GA++NA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 31.5 bits (72), Expect = 0.013
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 90 TPLHRAASAANEEIVTLLLDNGAD 113
TPLH AA N E+V LLL++GAD
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGAD 27
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 38.3 bits (90), Expect = 4e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNA 82
G T LH AA + N + LL+ +GA++NA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.9 bits (76), Expect = 0.005
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 90 TPLHRAASAANEEIVTLLLDNGAD 113
TPLH AA N E+V LLLD GAD
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGAD 27
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 41.0 bits (96), Expect = 1e-04
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 83 VTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL-- 140
+ + TPLH AAS E+ V +LL + + ++D++G TAL + H KI +IL
Sbjct: 553 IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYH 612
Query: 141 LERFSDLQT 149
SD
Sbjct: 613 FASISDPHA 621
Score = 38.7 bits (90), Expect = 6e-04
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 32/127 (25%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP+I D+ G T LH AA + L+L+ NV+ + A T L A SA + +I
Sbjct: 550 DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-IRDANGNTALWNAISAKHHKIFR 608
Query: 106 L-------------------------------LLDNGADSTLKDSDGLTALDRSRKESHE 134
+ LL G + +D G TAL + E H
Sbjct: 609 ILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHV 668
Query: 135 KISQILL 141
+ ++L+
Sbjct: 669 DMVRLLI 675
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 40.4 bits (94), Expect = 2e-04
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 46 DPNIPDNAGYTALHYAAR-SNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N D T LH A+ NK I + L+ GANVNA TP+H AA N I+
Sbjct: 333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC-DKTPIHYAAVRNNVVII 391
Query: 105 TLLLDNGAD 113
LLD GAD
Sbjct: 392 NTLLDYGAD 400
Score = 39.7 bits (92), Expect = 2e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 69 ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRS 128
I +L+ GA+VNA TP+H AA N ++V LLL GAD + D L+ L+ +
Sbjct: 160 IAEMLLEGGADVNA-KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
Query: 129 RKESHEKISQILLERFSDLQTN 150
+ + +++ S++ N
Sbjct: 219 VDSKNIDTIKAIIDNRSNINKN 240
Score = 38.5 bits (89), Expect = 6e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N D T +HYAA N + LL+S GA+VN + + L A + N + +
Sbjct: 169 ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD-LSVLECAVDSKNIDTI 227
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKES 132
++DN ++ D L A+ E+
Sbjct: 228 KAIIDNRSNINKNDLSLLKAIRNEDLET 255
Score = 34.7 bits (79), Expect = 0.013
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI-VTL 106
N D T +HYAA NN I L+ GA++ A+++ T LH A N + V
Sbjct: 369 NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK-IGTALHFALCGTNPYMSVKT 427
Query: 107 LLDNGADSTLKDSDGLTALDRS-RKESHEKISQILLERFSDL 147
L+D GA+ K+ D T L + +K + ++LL+ +D+
Sbjct: 428 LIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV 469
Score = 31.6 bits (71), Expect = 0.16
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 10 NDLPTCKPILPEHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNN-KP 68
NDL K I E + +++L G N D+ T LH+A+++ +
Sbjct: 240 NDLSLLKAIRNEDLETSLLLYDAG-----------FSVNSIDDCKNTPLHHASQAPSLSR 288
Query: 69 ICLLLISRGANVNAVTRAGQATPLH-RAASAANEEIVTLLLDNGADSTLKDSDGLTALDR 127
+ L+ RGA+VNA G+ TPL+ A + + E + L+ GAD D +T L +
Sbjct: 289 LVPKLLERGADVNAKNIKGE-TPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQ 347
Query: 128 S 128
+
Sbjct: 348 A 348
Score = 30.4 bits (68), Expect = 0.36
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 52 NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAAN-EEIVTLLLDN 110
N +L A R+ + LLL G +VN++ + TPLH A+ A + +V LL+
Sbjct: 238 NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDC-KNTPLHHASQAPSLSRLVPKLLER 296
Query: 111 GADSTLKDSDGLTAL 125
GAD K+ G T L
Sbjct: 297 GADVNAKNIKGETPL 311
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 39.6 bits (92), Expect = 2e-04
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 69 ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDR- 127
I L I ++N + AG T L+RA A ++V+ LL+NGA+ S+G T LD
Sbjct: 203 IYKLCIPYIEDINQLD-AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA 261
Query: 128 -------SRKESHEKISQILL 141
+R+E+H KI +ILL
Sbjct: 262 VDRGSVIARRETHLKILEILL 282
Score = 26.5 bits (58), Expect = 7.0
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 37 PGHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
P L I + D N D G T L+ A + + L+ GANVNAV G
Sbjct: 198 PTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG 254
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 38.5 bits (89), Expect = 7e-04
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE--EIV 104
PN D+ G LH A++ NN I +L++ GA+ NA + + TPL+ + +E E +
Sbjct: 65 PNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHK-TPLYYLSGTDDEVIERI 123
Query: 105 TLLLDNGA 112
LL+ GA
Sbjct: 124 NLLVQYGA 131
Score = 30.8 bits (69), Expect = 0.26
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 73 LISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKES 132
L+ RG + N G PLH A+ N IV +LL +GAD D T L
Sbjct: 58 LLHRGYSPNETDDDGN-YPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD 116
Query: 133 HEKISQILL 141
E I +I L
Sbjct: 117 DEVIERINL 125
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 35.9 bits (83), Expect = 0.004
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 58 LHYAARSNNKP-ICLLLISRGANVNAVTRAGQATPL------HRAASAANEEIVTLLLDN 110
L Y R + K I LLI GA+VN + TPL S ++IV LLL
Sbjct: 40 LLYLKRKDVKIKIVKLLIDNGADVN--YKGYIETPLCAVLRNREITSNKIKKIVKLLLKF 97
Query: 111 GADSTLKDSDG 121
GAD LK +G
Sbjct: 98 GADINLKTFNG 108
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 35.0 bits (80), Expect = 0.007
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 48 NIPDNAGYTALHYAARSNNK----PICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
N D+AG +H AA + I LI GA++NA T LH AA + ++
Sbjct: 54 NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDL 113
Query: 104 VTLLL-DNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L G D ++D + + + + QIL E
Sbjct: 114 AEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE 153
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 34.2 bits (78), Expect = 0.017
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 69 ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRS 128
ICL + ++N + + G+ T LH+A + +V+LLL++G+D ++ ++G T + +
Sbjct: 437 ICLPYLK---DINMIDKRGE-TLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIA 492
Query: 129 RKES 132
ES
Sbjct: 493 INES 496
Score = 33.4 bits (76), Expect = 0.036
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N+ D G T LH A R N + + LL+ G++VN + G + N E++
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK 503
Query: 106 LLL 108
+LL
Sbjct: 504 MLL 506
Score = 26.5 bits (58), Expect = 6.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 100 NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK----ISQILLE 142
N E+V LLLD+G + K+ LT L+ H K I+ LLE
Sbjct: 47 NVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLE 93
>gnl|CDD|240523 cd13150, DAXX_histone_binding, Histone binding domain of the
death-domain associated protein (DAXX). DAXX is a
nuclear protein that modulates transcription of various
genes and is involved in cell death and/or the
suppression of growth. DAXX is also a histone chaperone
conserved in Metazoa that acts specifically on histone
H3.3. This alignment models a functional domain of DAXX
that interacts with the histone H3.3-H4 dimer, and in
doing so competes with DNA binding and interactions
between the histone chaperone ASF1/CIA and the H3-H4
dimer.
Length = 198
Score = 33.7 bits (78), Expect = 0.020
Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 100 NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
E + L D+ D L+D + L+ +RK ++++++ +E++ + Q ++
Sbjct: 147 WENFGSHLTDDEKDPALEDPELKRKLEENRKIGDKRLNEV-IEKYVNKQDDL 197
>gnl|CDD|234399 TIGR03923, T7SS_EccE, type VII secretion protein EccE. This model
represents the transmembrane protein EccB of the
actinobacterial flavor of type VII secretion systems.
Species such as Mycobacterium tuberculosis have several
instances of this system per genome, designated EccE1,
EccE2, etc. This model represents a conserved core
region, and many members have 200 or more additional
C-terminal residues [Protein fate, Protein and peptide
secretion and trafficking].
Length = 341
Score = 32.4 bits (74), Expect = 0.075
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 72 LLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDR 127
L + N+ A+ G L R A AA + L + G + + + A
Sbjct: 179 LRLDAADNLAALQARGGRIGLARTAVAAARRLADHLREAGWRARPLTAPEIPAAVA 234
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 31.4 bits (71), Expect = 0.093
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 54 GYTALHYAARSNNKPICLLLISR-GANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
G T LH A + N + L ++ G N+ + A TP + A + +++ +L GA
Sbjct: 92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYA-FKTPYYVACERHDAKMMNILRAKGA 150
Score = 30.6 bits (69), Expect = 0.18
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 70 CLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
LL+ GA++N R TPLH A N E+ T L
Sbjct: 74 LKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111
>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
Length = 321
Score = 30.8 bits (69), Expect = 0.25
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVT 84
AGYTA YAAR+N +P+ + + +G + T
Sbjct: 17 AGYTAAVYAARANLQPVLITGMEKGGQLTTTT 48
>gnl|CDD|227869 COG5582, COG5582, Uncharacterized conserved protein [Function
unknown].
Length = 182
Score = 30.5 bits (69), Expect = 0.25
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 50 PDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLD 109
P+ A Y LH+A S N +L S N + T L A A E V
Sbjct: 92 PNEAIYIQLHFAGASKNPQYLAVLES---NPQLPENLSEQTKLKELADALIERSVHAFER 148
Query: 110 NGADSTLKDSDGLTALDRSRKESHEKISQIL 140
L+ D ALD KE ++ QIL
Sbjct: 149 ---KKLLQQID--EALDMRDKERFYQLVQIL 174
>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol
dehydrogenase (secoisolariciresinol-DH)-like, classical
(c) SDRs. Podophyllum secoisolariciresinol-DH is a homo
tetrameric, classical SDR that catalyzes the
NAD-dependent conversion of (-)-secoisolariciresinol to
(-)-matairesinol via a (-)-lactol intermediate.
(-)-Matairesinol is an intermediate to various
8'-lignans, including the cancer-preventive mammalian
lignan, and those involved in vascular plant defense.
This subgroup also includes rice momilactone A synthase
which catalyzes the conversion of
3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide
into momilactone A, Arabidopsis ABA2 which during
abscisic acid (ABA) biosynthesis, catalyzes the
conversion of xanthoxin to abscisic aldehyde and, maize
Tasselseed2 which participate in the maize sex
determination pathway. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering). In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering)
contributing to the active site; while substrate binding
is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 249
Score = 29.7 bits (67), Expect = 0.44
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 55 YTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
YTA +A + L G VN V+ G ATPL A +E + + A
Sbjct: 153 YTASKHAVLGLTRSAATELGEHGIRVNCVSPYGVATPLLTAGFGVEDEAIEEAVRGAA 210
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (pfam00070) [Energy metabolism,
Electron transport].
Length = 299
Score = 29.9 bits (68), Expect = 0.49
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 53 AGYTALHYAARSNNKPICL 71
AG TA YAAR+N KP+ +
Sbjct: 10 AGLTAAIYAARANLKPLLI 28
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 29.4 bits (66), Expect = 0.69
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 66 NKPICLLLISRGANVNAVTRAG--QATPLHRAASAANEEIVTLLL 108
+ P L+L+ RGA+ + + + L RA++A +EE V LLL
Sbjct: 631 SYPEGLVLVPRGADDGSTVPGPHIRGSRL-RASAAGDEE-VDLLL 673
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 28.3 bits (63), Expect = 1.6
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 51 DNAGYTALH-YAARSN-NKPICLLLISRGANVNAVTRAGQATPLHRAASA---------- 98
D+AG T LH Y R N + I LL G ++N G T LH S
Sbjct: 314 DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGN-TVLHTYLSMLSVVNILDPE 372
Query: 99 ----ANEEIVTLLLDNGADSTLKDSDGLTAL 125
+++ L+ GAD T + G T L
Sbjct: 373 TDNDIRLDVIQCLISLGADITAVNCLGYTPL 403
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 27.5 bits (61), Expect = 2.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 51 DNAGYTALHYAARSNNKPICL---LLISRGANVNAVTRAGQATPLHRAASAANEEI 103
D+ G H A + + LL++ GA++NA T LH AAS N E+
Sbjct: 54 DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYEL 109
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 28.0 bits (62), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
D N D G + L+Y S++ + LI GA++N T+ G
Sbjct: 402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG 443
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 27.7 bits (61), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVT 84
D ++ DN T L+YA NN L+ GA+VN +
Sbjct: 454 DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS 492
>gnl|CDD|132259 TIGR03215, ac_ald_DH_ac, acetaldehyde dehydrogenase (acetylating).
Members of this protein family are acetaldehyde
dehydrogenase (acetylating), EC 1.2.1.10. This enzyme
oxidizes acetaldehyde, using NAD(+), and attaches
coenzyme A (CoA), yielding acetyl-CoA. It occurs as a
late step in the meta-cleavage pathways of a variety of
compounds, including catechol, biphenyl, toluene,
salicylate, etc.
Length = 285
Score = 27.7 bits (62), Expect = 2.7
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 79 NVNAVTRAGQAT-PL----HRAASAANEEIV 104
NVN VT GQAT P+ R A EIV
Sbjct: 117 NVNMVTCGGQATIPIVAAISRVAPVHYAEIV 147
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 27.7 bits (61), Expect = 3.1
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 12 LPTCKPILPEHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICL 71
+ + P I + + + LP+ A S +
Sbjct: 391 VAPPGLVAPTEINPSFLASPRKKMKREKLPVTFG-ALDDTLAWKEPSKEDQTSED----- 444
Query: 72 LLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLT 123
A + A P + EE+ L+ N D++L +G++
Sbjct: 445 --GKMLAIMGEAAAALALEPKKKKKEKEGEELQPKLVMNSEDASLASQEGMS 494
>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
Length = 309
Score = 27.1 bits (60), Expect = 4.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 77 GANV-NAVTR-AGQATPLHRAASAANEEIVTLLLDNG 111
G NV A+ G AT + A A E +V+LL D
Sbjct: 41 GINVARAIAHLGGSATAIFPAGGATGEHLVSLLADEN 77
>gnl|CDD|185165 PRK15253, PRK15253, putative fimbrial assembly chaperone protein
StcB; Provisional.
Length = 242
Score = 26.9 bits (59), Expect = 4.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 39 HLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTR 85
+L + + PN +NAG L +A ++ K LI R + + AVT+
Sbjct: 120 YLNVLDIPPNSQENAGKNVLKFAMQNRIK-----LIWRPSRIAAVTK 161
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 26.9 bits (60), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRA 86
AG TA YAAR+ K +L++ G +T+
Sbjct: 14 AGLTAAIYAARAGLK--VVLILEGGEPGGQLTKT 45
>gnl|CDD|240294 PTZ00150, PTZ00150, phosphoglucomutase-2-like protein; Provisional.
Length = 584
Score = 26.6 bits (59), Expect = 5.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 89 ATPLHRA--ASAANEEIVTLLLDNGADSTLKDS 119
ATP + +A+ +++T +NGA T++ S
Sbjct: 503 ATPDGKPLLPVSASTQMITFYFENGAIITIRGS 535
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 26.6 bits (58), Expect = 7.2
Identities = 4/54 (7%), Positives = 11/54 (20%), Gaps = 7/54 (12%)
Query: 29 LLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA 82
V + Y + P ++ R +++
Sbjct: 136 AYEEAL--GEEADPVRVPERAA-----CGMAYTTGTTGLPKGVVYSHRALVLHS 182
>gnl|CDD|220411 pfam09802, Sec66, Preprotein translocase subunit Sec66. Members of
this family of proteins are a component of the
heterotetrameric Sec62/63 complex composed of SEC62,
SEC63, SEC66 and SEC72. The Sec62/63 complex associates
with the Sec61 complex to form the Sec complex. Sec 66
is involved in SRP-independent post-translational
translocation across the endoplasmic reticulum and
functions together with the Sec61 complex and KAR2 in a
channel-forming translocon complex. Furthermore, Sec66
is also required for growth at elevated temperatures.
Length = 190
Score = 25.8 bits (57), Expect = 8.9
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 9 WNDLPTCKPILPEHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAA-----R 63
L +PI PEH+ I Y P P + + AL A R
Sbjct: 32 AKKLAELEPIFPEHLQRDIYFSLKHLYEP---EEVPKTPKVHEKVLKAALLRRAAEAIRR 88
Query: 64 S----NNKPICLLLISRG 77
S NKP +L G
Sbjct: 89 SIKLKENKPALNILYQNG 106
>gnl|CDD|224315 COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 314
Score = 26.2 bits (58), Expect = 9.2
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 83 VTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD-GLTALDRSRKESHEKISQILL 141
+R P A + A ++ LD S ++D GLT +RS+ +I+
Sbjct: 157 SSRITHNHPRAIAGAVAVAAAISRALDGQDWSAIEDQQLGLTVTERSKAIRIYIAEKIVY 216
Query: 142 ER 143
Sbjct: 217 NL 218
>gnl|CDD|226990 COG4643, COG4643, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 366
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 34 RYPPGHLPICS-VDPNIPDNAGYTALHYAARSNN 66
++P + I + D N +N G T AA++ N
Sbjct: 248 KFPDAQIIIAADDDINTANNPGLTKAEEAAQAVN 281
>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 253
Score = 25.8 bits (57), Expect = 9.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 73 LISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
L +G VN+V+ T HR E+ + L
Sbjct: 172 LAPKGVRVNSVSPGVIVTGFHRRMGMPEEQYIKFL 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,566,373
Number of extensions: 664121
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 118
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)