RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3338
(152 letters)
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 111 bits (279), Expect = 8e-32
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G TAL + A + LL GA+++ G T LH AA E+V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L++ GAD ++D GLTAL+ +R+ ++
Sbjct: 128 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164
Score = 82.9 bits (206), Expect = 5e-21
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 46 DPNIPD-NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D + D G TALH AA + L+ GA++ G T L A
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL-TALELAREILKTTPK 159
Query: 105 TLLLDNGADSTLKD 118
+ G L+
Sbjct: 160 GNPMQFGRRIGLEK 173
Score = 80.2 bits (199), Expect = 6e-20
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
+ G + + P + A+V + + TP AA A+E+ ++ L
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYE-TPWWTAARKADEQALSQL 63
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ D D +G TAL +K ++L E
Sbjct: 64 LE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98
Score = 56.0 bits (136), Expect = 9e-11
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 24/79 (30%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
+ D + D G TAL A + G +
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL--------- 171
Query: 92 LHRAASAANEEIVTLLLDN 110
E+++ +L
Sbjct: 172 ---------EKVINVLEGQ 181
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 109 bits (274), Expect = 3e-31
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G + + DP + +AL A I +L+ G +VN G TP
Sbjct: 47 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG-TP 105
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
L A + + V +LL++GAD T++ G ++D + + + Q++ L NI
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 103 bits (259), Expect = 6e-29
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G + + N D G+T L +AA + L+ GA+ + + + +
Sbjct: 14 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SA 72
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L A S +IV +LLD G D D +G T L + +H K ++LLE
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Score = 92.8 bits (232), Expect = 6e-25
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
A ++H A I + +N G TPL AA+ +V LL NGA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGA 60
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLER 143
D L +AL + + + I ++LL+
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Score = 89.0 bits (222), Expect = 2e-23
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
VD N D G T L YA N+ +L+ GA+ T +G + A + +
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY-NSMDLAVALGYRSVQ 151
Query: 105 TLLLDNGADSTLKDSD 120
++ + +
Sbjct: 152 QVIESHLLKLLQNIKE 167
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 107 bits (271), Expect = 4e-31
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DPN+ D+AG+T LH A + + LL+ A VN +PLH AA + +IV
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND-SPLHDAAKNGHVDIVK 93
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LLL GA + GL +D + ES + + + +
Sbjct: 94 LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 99.4 bits (249), Expect = 7e-28
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+DP ++ G T LH A+ + P L+ G++ N AG TPLH A + + ++V
Sbjct: 2 IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVV 59
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL + A + L + K H I ++LL
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 84.4 bits (210), Expect = 5e-22
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N + LH AA++ + I LL+S GA+ NAV G P+ + + ++
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL-RPVDYTDDESMKSLLL 126
Query: 106 LLLDNGADST 115
L N + S
Sbjct: 127 LPEKNESSSA 136
Score = 49.3 bits (119), Expect = 1e-08
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA 82
GH+ I + N + G + Y + K + LL ++ +
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 110 bits (277), Expect = 6e-31
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G TAL + A + LL GA+++ G T LH AA E+V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L++ GAD ++D GLTAL+ +R+ ++
Sbjct: 129 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 165
Score = 78.8 bits (195), Expect = 8e-19
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
+ G + + P + A+V + + TP AA A+E+ ++ L
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYE-TPWWTAARKADEQALSQL 64
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ D D +G TAL +K ++L E
Sbjct: 65 LE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99
Score = 68.4 bits (168), Expect = 6e-15
Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 10/86 (11%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
+ D + D G TAL A + G + +
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG----LEKVIN 177
Query: 92 LHRAASAANEEIVTLLLDNGADSTLK 117
+ E+ ++ G ++
Sbjct: 178 VLEGQVFEYAEVDEIVEKRGKGKDVE 203
Score = 49.5 bits (119), Expect = 4e-08
Identities = 5/53 (9%), Positives = 12/53 (22%), Gaps = 3/53 (5%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAAS 97
+ G + + + A A + + L A +
Sbjct: 190 DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA--KDYE-DGLEYAVA 239
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 108 bits (273), Expect = 2e-30
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + TPL AA + E
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGSYETAK 175
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LLD+ A+ + D D +++ H I ++L E
Sbjct: 176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Score = 101 bits (255), Expect = 7e-28
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D + + G T L AAR + + LI+ A+VNAV G+ + LH AA+ N +
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAA 141
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
+LL NGA+ ++++ T L + +E + +++LL+ F++
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Score = 98.6 bits (247), Expect = 1e-26
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGA-NVNAVTRAGQATPLHRAASAANEEIV 104
D NI DN G T LH A ++ + + +LI A +++A G TPL AA A E ++
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLAVEGML 108
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+++ AD D G +AL + ++ + +LL+
Sbjct: 109 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147
Score = 93.2 bits (233), Expect = 1e-24
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
N D G TALH AAR + L+ A+ N G+ TPLH A SA + + +
Sbjct: 18 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQI 76
Query: 107 LLDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+ N A D + DG T L + + + E + + L+
Sbjct: 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Score = 85.2 bits (212), Expect = 2e-21
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ ++ +N T L AAR + +L+ AN + + P A + +IV
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR-LPRDIAQERMHHDIVR 208
Query: 106 LLLDNGAD 113
LL +
Sbjct: 209 LLDEYNLV 216
Score = 69.4 bits (171), Expect = 2e-15
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 65 NNKPICLLLISRGANV-NAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLT 123
+ + I +GA++ N R G+ T LH AA + + LL+ AD+ ++D+ G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 124 ALDRSRKESHEKISQILLE 142
L + + + QIL+
Sbjct: 61 PLHAAVSADAQGVFQILIR 79
Score = 51.3 bits (124), Expect = 8e-09
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 8/48 (16%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLH 93
+ +I D+ A + I LL + LH
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS--------PQLH 222
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 106 bits (267), Expect = 4e-30
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP+I +AL A+ I LL+ R ++N G TPL A + + V
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNHVKCVE 119
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL GAD T + G T +D + + K+ Q++
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 99.0 bits (248), Expect = 3e-27
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N PD G+T L +A+ L+ GA+ + + + + + L A++ +IV
Sbjct: 28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE-SALSLASTGGYTDIVG 86
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL+ D + D +G T L + + +H K + LL R
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Score = 94.4 bits (236), Expect = 2e-25
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G+ I + D NI D G T L YA R N+ L++RGA++ +G TP
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY-TP 138
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLT 123
+ A + ++ ++ ++ +
Sbjct: 139 MDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 85.5 bits (213), Expect = 5e-22
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGAN-VNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
++H A + +G N VN G TPL A++ E V LL+ GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGF-TPLIWASAFGEIETVRFLLEWGA 60
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLER 143
D + + +AL + + I +LLER
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLER 91
Score = 51.3 bits (124), Expect = 4e-09
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 87 GQATPLHRAASAANEEIVTLLLDNGADS-TLKDSDGLTALDRSRKESHEKISQILLER 143
G + +H+ A+ + + L G + D G T L + + + LLE
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 106 bits (267), Expect = 5e-30
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N+ + T LH AA ++ I L+ A++NAV G PLH A +++
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN-VPLHYACFWGQDQVAE 122
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+ NGA ++ + G +D+++ E + + +
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159
Score = 98.3 bits (246), Expect = 6e-27
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G++ LH+A R + +LI RGA +N + R TPLH AAS + +IV
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQ 89
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LL AD + G L + +++++ L+
Sbjct: 90 KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Score = 89.0 bits (222), Expect = 2e-23
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N + G LHYA + L++ GA V+ + G+ P+ +A + E +
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE-MPVDKAKAPLRELLRE 155
Query: 106 LLLDNGAD 113
G +
Sbjct: 156 RAEKMGQN 163
Score = 88.6 bits (221), Expect = 3e-23
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGAN-VNAVTRAGQATPLHRAASAANEEIVTLLLD 109
+ R N L + N +N G +PLH A +V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIM 60
Query: 110 NGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GA + + T L + H I Q LL+
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
Score = 58.6 bits (143), Expect = 1e-11
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 13/65 (20%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G + +I + G + A + + G N+N P
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN-------RIP 168
Query: 92 LHRAA 96
Sbjct: 169 YKDTF 173
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 104 bits (262), Expect = 1e-29
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ T LH AA + I +L+ GA+VNA T LH A ++E+V
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-TALHWATEHNHQEVVE 117
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
LL+ GAD + TA D S +E +++IL
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 96.7 bits (242), Expect = 1e-26
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
D G + LH AA+ + +L+ G + +A T+ + TPLH AAS + IV +LL +
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKH 89
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GAD KD +TAL + + +H+++ ++L++
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 88.6 bits (221), Expect = 2e-23
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
L AAR+ +L++ GA G +PLH AA + +LL G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGT-SPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
+ T L + E H I ++LL+
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLK 88
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 104 bits (263), Expect = 3e-29
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ N D +G T L ++ + L+ GANVN G+ TPL A+ EIV
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVASKYGRSEIVK 151
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LL+ GAD + +D GLTA +R +++ +I E
Sbjct: 152 KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 99.0 bits (248), Expect = 4e-27
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D G TAL +A ++N I L+S+G+NVN +G+ TPL + E+
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGYSEMSY 118
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LL++GA+ ++ +G T L + K +I + LLE
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Score = 97.8 bits (245), Expect = 1e-26
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 1/105 (0%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAAS 97
N D+ T L A + L+ + G T L A
Sbjct: 19 SINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVK 77
Query: 98 AANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
I LL G++ KD G T L S + ++S LLE
Sbjct: 78 NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Score = 77.8 bits (193), Expect = 7e-19
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ N + G T L A++ I L+ GA+++A G T A +E++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFGRQEVIK 184
Query: 106 LLLDNGA 112
+ +
Sbjct: 185 IFTEVRR 191
Score = 67.0 bits (165), Expect = 9e-15
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
+ D G + L N + TPL A E + L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNR-TPLMVACMLGMENAIDKL 54
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
++N KD +G TAL + K + I++ LL
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 109 bits (274), Expect = 4e-29
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH+P+ V + GYT LH A+ N + L+ A+VNA T+ G +P
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY-SP 347
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LH+AA + +IVTLLL NGA SDG T L +++ + ++ +L +
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 107 bits (271), Expect = 1e-28
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
P+ P GYT LH AA+ N + L+ G + NA + G TPLH AA + E+V
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV-TPLHLAAQEGHAEMV 261
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL A+ L + GLT L +E H ++ +L++
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Score = 107 bits (270), Expect = 2e-28
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHLPI PN+ + T LH AAR+ + + L+ A VNA + Q TP
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TP 83
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LH AA + +V LLL+N A+ L + G T L + +E H + LLE+
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 105 bits (265), Expect = 9e-28
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ +G T LH A+ + PI L+ RGA+ N + TPLH AA A + E+
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVA 63
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL N A K D T L + + H + ++LLE
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102
Score = 104 bits (263), Expect = 2e-27
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
PN G T LH A NN I LL+ RG + ++ G TPLH AA E+
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVAR 229
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL G + + G+T L + +E H ++ +LL +
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Score = 102 bits (258), Expect = 6e-27
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH + + + N+ + +G T LH A+ + P+ +LI G V+A TR G TP
Sbjct: 256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY-TP 314
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LH A+ N ++V LL + AD K G + L ++ ++ H I +LL+
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 101 bits (255), Expect = 2e-26
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH + + +PN+ AG+T LH AAR + L L+ + A+ +T+ G TP
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TP 149
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LH AA + LLL+ A +GLT L + ++ I ++LL R
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Score = 92.2 bits (230), Expect = 6e-23
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N GY+ LH AA+ + I LL+ GA+ N V+ G TPL A +
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT-TPLAIAKRLGYISVT 393
Query: 105 TLL---LDNGADSTLKDSDGLTA-------LDRSRKESHEKIS 137
+L D + + D ++ LD S E E IS
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELIS 436
Score = 69.1 bits (170), Expect = 9e-15
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 SRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHE 134
S G + +G TPLH A+ + IV LL GA + + T L + + H
Sbjct: 2 SPGISGGGGGESGL-TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 135 KISQILLER 143
++++ LL+
Sbjct: 61 EVAKYLLQN 69
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 102 bits (256), Expect = 5e-29
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N G LHYAA I L+ +GA++NA + TPL A + V
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI-TPLLSAVYEGHVSCVK 90
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKI 136
LLL GAD T+K DGLTA + + ++ + +
Sbjct: 91 LLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 92.1 bits (230), Expect = 3e-25
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
+ +A ++ + +++G +VN G+ PLH AA EI+ LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLK 62
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLER 143
GAD D +T L + E H ++LL +
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSK 95
Score = 70.5 bits (174), Expect = 9e-17
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N PD T L A + LL+S+GA+ G T + A + ++
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL-TAFEATDNQAIKALL 122
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 102 bits (256), Expect = 6e-29
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G + DPN + G + + + LL+ GA N A P
Sbjct: 23 GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+H AA + + +L GA + D+ G +D + ++ H I++ L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 94.8 bits (237), Expect = 5e-26
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
S ++ + L AA L+ GA+ NA+ R G+ P+ + ++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR-RPIQVMMM-GSAQV 59
Query: 104 VTLLLDNGADSTLKDSDGLT-ALDRSRKESHEKISQILLER 143
LLL +GA+ D LT + + +E +L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Score = 82.5 bits (205), Expect = 3e-21
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 38 GHLPICSV------DPNIPDNAGYT-ALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
G + + +PN D A T +H AAR ++L GA ++ G+
Sbjct: 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-L 113
Query: 91 PLHRAASAANEEIVTLLLDNGAD 113
P+ A + +I L D
Sbjct: 114 PVDLAEEQGHRDIARYLHAATGD 136
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 103 bits (259), Expect = 6e-29
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+AG T L AA + I +L+ GA+VNA G TPLH AA + EIV
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFGHLEIVE 130
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LL NGAD +D G TA D S +E +++IL +
Sbjct: 131 VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 99.4 bits (249), Expect = 2e-27
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D +G+T LH AA + + I +L+ GA+VNAV AG TPL AA + EIV
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+LL NGAD D +G T L + H +I ++LL+
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 91.3 bits (228), Expect = 2e-24
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNA-GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ + L AAR+ +L++ GA+VNA +G TPLH AA + EIV
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIV 63
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LL NGAD D G+T L + H +I ++LL+
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Score = 57.8 bits (141), Expect = 1e-11
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 76 RGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEK 135
RG++ + + L AA A ++ V +L+ NGAD +D+ G T L + H +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 136 ISQILLER 143
I ++LL+
Sbjct: 62 IVEVLLKN 69
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 102 bits (257), Expect = 7e-29
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G + +PN P++ G + + + LL+ GA N A P
Sbjct: 23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRP 81
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+H AA + + +L GA ++D+ G +D + + H +++ L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 89.5 bits (223), Expect = 1e-23
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 38 GHLPICSV------DPNIPDNAGYT-ALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
G + + +PN D A T +H AAR ++L GA ++ G+
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-L 113
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALD 126
P+ A + ++ L + + + A +
Sbjct: 114 PVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 87.9 bits (219), Expect = 3e-23
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
L AA L+ GAN NA G+ P+ + + LL
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMMM-GSARVAELL 63
Query: 108 LDNGADSTLKDSDGLT-ALDRSRKESHEKISQILLER 143
L +GA+ D LT + + +E +L
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Score = 64.4 bits (158), Expect = 5e-14
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 12/73 (16%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G L V ++ D G + A ++ + L + +
Sbjct: 89 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG------SNH 142
Query: 92 LHRAASAANEEIV 104
A+ +I
Sbjct: 143 ARIDAAEGPSDIP 155
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 104 bits (263), Expect = 9e-29
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D+ G +ALH+AA NN ++L+ GAN + + TPL AA + E
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE-TPLFLAAREGSYETAK 207
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LLD+ A+ + D D +++ H I ++L
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244
Score = 101 bits (254), Expect = 2e-27
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D + + G T L AAR + + LI+ A+VNAV G+ + LH AA+ N +
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAA 173
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
+LL NGA+ ++++ T L + +E + +++LL+ F++
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Score = 98.3 bits (246), Expect = 3e-26
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGA-NVNAVTRAGQATPLHRAASAANEEIV 104
D NI DN G T LH A ++ + + +LI A +++A G TPL AA A E ++
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAARLAVEGML 140
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+++ AD D G +AL + ++ + +LL+
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Score = 93.7 bits (234), Expect = 2e-24
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
N D G TALH AAR + L+ A+ N G+ TPLH A SA + + +
Sbjct: 50 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQI 108
Query: 107 LLDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+ N A D + DG T L + + + E + + L+
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145
Score = 87.5 bits (218), Expect = 4e-22
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 45 VDPNIPDNAGYTALHYAARS-------------NNKPICLLLISRGANVNAVTRAGQATP 91
+D N+ G+T L A+ S + + I +GA+++ T T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LH AA + + LL+ AD+ ++D+ G T L + + + QIL+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Score = 82.9 bits (206), Expect = 3e-20
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ ++ +N T L AAR + +L+ AN + + P A + +IV
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR-LPRDIAQERMHHDIVR 240
Query: 106 LLLDNGAD 113
LL
Sbjct: 241 LLDLEHHH 248
Score = 52.5 bits (127), Expect = 4e-09
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
+ +I D+ A + I LL + +
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 104 bits (262), Expect = 1e-28
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D NI DN LH+AA S I +L++ +++AV G +PLH AA + V
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCVV 194
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L L +D TLK+ +G T L + S + + +
Sbjct: 195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231
Score = 102 bits (258), Expect = 5e-28
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
++ + + LH AA + + IC +L+ GAN++ + + TPL AA + E V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAV 60
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ GA KD++G T L + K+ H ++ Q LL
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99
Score = 98.6 bits (247), Expect = 2e-26
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+D N D+ G+T + +A + + LL+S+G+++N LH AA + +I
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDIA 160
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+LL D + G + L + +E+ + L R
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199
Score = 94.0 bits (235), Expect = 1e-24
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGA-NVNAVTRAGQATPLHRAASAANEEIV 104
+ D G T LH AA+ + + L+S G +VN G TP+ A + ++V
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLV 127
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL G+D ++D++ L + I++ILL
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166
Score = 84.4 bits (210), Expect = 5e-21
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + + G + LH AAR N +L +SR ++V + G+ TPL A+ +
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSAL 227
Query: 106 LLLDNGADS 114
+ DS
Sbjct: 228 QMSKALQDS 236
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 102 bits (256), Expect = 1e-28
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G I PN+ D +G + +H AAR+ +L+ GA+VN G P
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA-LP 104
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+H A + +V+ L +D +D+ GLT L+ + + + + IL
Sbjct: 105 IHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 99.8 bits (250), Expect = 9e-28
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
V P+ + G TAL + I L L+ +GA+ N +G +P+H AA + +
Sbjct: 27 VHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGT-SPVHDAARTGFLDTL 84
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+L+++GAD + D G + + +E H + L
Sbjct: 85 KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Score = 82.5 bits (205), Expect = 5e-21
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 54 GYTALHYAARSNN-KPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
L AA + + + LL + +A+ R G+ T L + I LL GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQ-VMMFGSTAIALELLKQGA 59
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLE 142
++D+ G + + + + ++L+E
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 101 bits (254), Expect = 1e-28
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D G T L+ A + I +L+ GA+VNAV G TPLH AA + EI
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF-TPLHLAAFIGHLEIAE 97
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LL +GAD +D G TA D S +E +++IL +
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 89.8 bits (224), Expect = 4e-24
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNA-GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ + L AAR+ +L++ GA+VNA G TPL+ A + + EIV
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEIV 63
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+LL NGAD D+ G T L + H +I+++LL+
Sbjct: 64 EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 105 bits (265), Expect = 1e-28
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N + G TALH A +N + L+ GAN+N G PLH AAS +I
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCGYLDIA 122
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ GA +S+G T LD + +E+ E++ Q + R
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Score = 101 bits (254), Expect = 4e-27
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
++ +G TALH AA + LLI +VN G TPLH AA EE
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW-TPLHAAAHWGKEEAC 248
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+L++N D + G TA D + ++ + ++ +
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286
Score = 86.4 bits (215), Expect = 2e-21
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ + G A S + L L+ RGA++N G T LH+A N ++V
Sbjct: 33 KTKVKFDDGAV-FLAACSSGDTEEVLRLLERGADINYANVDGL-TALHQACIDDNVDMVK 90
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L++NGA+ D++G L + + I++ L+ +
Sbjct: 91 FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Score = 86.4 bits (215), Expect = 2e-21
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ N PDN G+ LH AA I LIS+GA+V AV G TPL A A EE++
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQ 156
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
++ D A + Q L
Sbjct: 157 NEVNRQ------GVDIEAARKEEERIMLRDARQWLNS 187
Score = 80.6 bits (200), Expect = 3e-19
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAAS 97
+ + N A R + L S N ++G T LH AA+
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG-GTALHVAAA 208
Query: 98 AANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDL 147
E++ LL+ D +KD DG T L + E+ +IL+E D+
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Score = 80.6 bits (200), Expect = 4e-19
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D NI D G+T LH AA + C +L+ ++ AV + GQ T A +
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ-TAFDVADEDILGYLE 281
Query: 105 TLLLDNGADSTLKD 118
L + K
Sbjct: 282 ELQKKQNLLHSEKR 295
Score = 80.2 bits (199), Expect = 4e-19
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
+ D ++ + + G A S+ + E V L
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG--AVFLAACSSGDTEEVLRL 59
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ GAD + DGLTAL ++ + + + + L+E
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 101 bits (255), Expect = 2e-28
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G LH A + + LL+ GA VN TPLH AA+ EI
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICK 125
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LLL +GAD T K+ DG T LD K+ I +L
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRG 161
Score = 96.7 bits (242), Expect = 2e-26
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
V+ + T LH+AA N + L+ GA+V+A + G PLH A S + E+
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL-VPLHNACSYGHYEVA 91
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LL+ +GA + D T L + + +I ++LL+
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Score = 85.5 bits (213), Expect = 4e-22
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISR-GANVNAVTRAGQATPLHRAASAANEEIVTLLLD 109
++ L AA++ + L + N + TPLH AA +V LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQ 63
Query: 110 NGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+GAD KD GL L + H +++++L++
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Score = 81.7 bits (203), Expect = 1e-20
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N+ D +T LH AA IC LL+ GA+ R G TPL + +I
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN-TPLD-LVKDGDTDIQD 157
Query: 106 LLLDNGA 112
LL + A
Sbjct: 158 LLRGDAA 164
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 103 bits (259), Expect = 3e-28
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKP-ICLLLISRGANVNAVTRAGQAT 90
GH I + D ++ D G T L +AA + LL++ +VN + + T
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LH A A N +++LLL+ GA+ ++ G +ALD +++ + + L E
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 103 bits (259), Expect = 3e-28
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G C D PD T LH+AA +N + IS+GA V+ + +TP
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LH A + +V L+ GAD +L D +G + + + + H I L+ +
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Score = 95.2 bits (238), Expect = 4e-25
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL + DP++ D G + +H AA+ + I LI++G +V+ + + G TP
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM-TP 145
Query: 92 LHRAASAANE-EIVTLLLDNGADSTLKD-SDGLTALDRSRKESHEKISQILLER 143
L AA + + LLL L D TAL + + + +LLE
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Score = 91.7 bits (229), Expect = 9e-24
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
D+ + A + C L+ G +V + T LH AA ++V
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYY 61
Query: 108 LDNGADSTLKDSD-GLTALDRSRKESHEKISQILLER 143
+ GA D T L + ++ H + L++
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Score = 82.1 bits (204), Expect = 4e-20
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 46 DPNIPDNA-GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
N+ D TALH+A + N + LL+ GANV+A G+ + L A N ++
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMI 226
Query: 105 TLLLDNGADSTLKD 118
L + +
Sbjct: 227 NHLQEARQAKGYDN 240
Score = 50.1 bits (121), Expect = 2e-08
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA 82
G+ + S+ + + + G +AL A + N + L
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 103 bits (259), Expect = 3e-28
Identities = 30/96 (31%), Positives = 42/96 (43%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
+ G+T LH A+ I LL+S GA+VNA T LH A N ++V+LL
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L GAD G + + +I Q L +
Sbjct: 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Score = 98.0 bits (245), Expect = 3e-26
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N +N T LH A +N I L+ G + G TPLH A V
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVG 95
Query: 106 LLLDNGADSTL------KDSDGLTALDRSRKESHEKISQILLER 143
+L + L + +G T L + + I ++L+
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139
Score = 93.4 bits (233), Expect = 2e-24
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 38 GHLPICSV------DPNIPDNA-GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
G+L I + D N + G TALH A N + LL+ GA+VN VT G +
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY-S 186
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKIS 137
P + I L ++ + + + +
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 93.0 bits (232), Expect = 2e-24
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 51 DNAGYTALHYAARSNNKPICL----LLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
G + LH A K + + + A +N Q TPLH A EI
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEA 63
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL G D L+D G T L + ++ +L +
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 100 bits (253), Expect = 3e-28
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+P++ D G+ +H AAR+ L+ A+VN G PLH AA + +V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVVE 120
Query: 106 LLLDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+ + A + ++ G TA D +R ++ ++
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 97.1 bits (243), Expect = 1e-26
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
V+ N + G TAL N I L+ RGAN + R G +H AA A + +
Sbjct: 29 VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGF-AVIHDAARAGFLDTL 86
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL+ AD ++D++G L + KE H ++ + L++
Sbjct: 87 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Score = 90.5 bits (226), Expect = 4e-24
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
L AA + L+ NVNA G+ T L N EI LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR-TALQ-VMKLGNPEIARRLLLR 59
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GA+ LKD G + + + Q LLE
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Score = 79.7 bits (198), Expect = 6e-20
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGA-NVNAVTRAGQATPLHRAASAANEEIV 104
D NI DN G LH AA+ + + L+ A NV G T A E+V
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVV 153
Query: 105 TLLLDNGA 112
+L+ NGA
Sbjct: 154 SLMQANGA 161
Score = 46.6 bits (112), Expect = 2e-07
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGA 78
+ ++ G TA A + L+ + GA
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 104 bits (261), Expect = 4e-28
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 46 DPNIPD-NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N P+ G T LH A + + LL+ GA+ A G+ TPL A N +
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR-TPLGSALLRPNPILA 241
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LL +GA D L+ S +S E
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 102 bits (257), Expect = 1e-27
Identities = 27/99 (27%), Positives = 43/99 (43%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ + G+T LH A + + LL GA++N TPLH A A ++
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL GAD T + G T L + + ++++L
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247
Score = 94.9 bits (237), Expect = 1e-24
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGAN---VNAVTRAGQATPLHRAASAANEEIV 104
G TALH A ++P L+ A ++ GQ T LH AA V
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTV 61
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNIA 152
L GA + + G TAL + + + +LL+ + +
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109
Score = 90.7 bits (226), Expect = 4e-23
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
++ ++ G TALH AA L + GA V R G T LH A +L
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCACVL 97
Query: 108 LDNGADSTLKDSDGLTAL 125
L SD
Sbjct: 98 LQPRPSHPRDASDTYLTQ 115
Score = 83.7 bits (208), Expect = 2e-20
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 13/111 (11%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQA------------TPLH 93
+ + G+TALH A R +L+ + P
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 94 RAASAANE-EIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ E E D ++ DG T L + ++ ++L +
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180
Score = 78.7 bits (195), Expect = 1e-18
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP G T L A N + LL + GA +P + S ++ +
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSSSGSDSDSDNRD 275
Query: 106 LLLDNG 111
+
Sbjct: 276 EGDEYD 281
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 104 bits (263), Expect = 6e-28
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + D G LH A + + LL+ GA VNA+ TPLH AAS E+ +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF-TPLHEAASKNRVEVCS 141
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
LLL +GAD TL + G +A+D + + + S LQ
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184
Score = 103 bits (260), Expect = 2e-27
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
V+ + D T LH AA N I LL+ GA+V+A + G PLH A S + E+
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL-VPLHNACSYGHYEVT 107
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL +GA D T L + ++ ++ +LL
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Score = 101 bits (254), Expect = 1e-26
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ N + T LH AA + + +L GA +NA+ GQ T LHRAA A + +
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ-TALHRAALAGHLQTCR 297
Query: 106 LLLDNGADSTLKDSDGLTALD 126
LLL G+D ++ G TA
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQ 318
Score = 98.3 bits (246), Expect = 2e-25
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 46 DPNIPDNAGYTALHYAARS---NNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
+ TALH A S K + LL+ +GANVN + TPLH AA A+ +
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHVAAERAHND 261
Query: 103 IVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
++ +L +GA DS G TAL R+ H + ++LL
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Score = 96.4 bits (241), Expect = 8e-25
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 39 HLPICSVDPNIPDNAGYTALHYAARSNN-KPICLLLISRGANVNAVTRAGQATPLHRAAS 97
L S + L AARS N + + LL N +A TPLH AA
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAG 67
Query: 98 AANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
IV LLL +GAD KD GL L + H +++++LL+
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Score = 86.4 bits (215), Expect = 4e-21
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N D+ G TALH AA + + C LL+S G++ + ++ G T E V
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF-TAAQMGN-----EAVQ 325
Query: 106 LLLDNGADSTLKDSDG 121
+L D D
Sbjct: 326 QILSESTPMRTSDVDY 341
Score = 81.4 bits (202), Expect = 3e-19
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 22/101 (21%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N D +T LH AA N +C LL+S GA+ V G+ + + A + E +T
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK-SAVDMAPTPELRERLT 174
Query: 106 LLLDN---------------------GADSTLKDSDGLTAL 125
+ + TAL
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215
Score = 64.4 bits (158), Expect = 4e-13
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 71 LLLISRGANVNAVTRAGQATPLHRAASAAN-EEIVTLLLDNGADSTLKDSDGLTALDRSR 129
L L A + L AA + N E+++ LL + D T L +
Sbjct: 8 LDLADPSAKAVLTGEYKK-DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 130 KESHEKISQILLER 143
+ +I Q+LL+
Sbjct: 67 GYNRVRIVQLLLQH 80
Score = 52.9 bits (128), Expect = 4e-09
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 38 GHLPICS------VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL C DP+I G+TA + ++S +
Sbjct: 291 GHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQ-----QILSESTPMRTSDVDY---R 342
Query: 92 LHRAASAAN 100
L A+ A +
Sbjct: 343 LLEASKAGD 351
Score = 30.9 bits (71), Expect = 0.14
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 102 EIVTLLLDNGADSTLKDSDGLTALDR-SRKESHEKISQILLER 143
+ L D A + L L +R + EK+ +L
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL 47
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 101 bits (255), Expect = 6e-28
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLIS-RGANVNAVTRAGQATPLHRAASAANEEI 103
V N D AG TAL++A +K I +L + +N + G T LH AA +I
Sbjct: 97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD-TALHAAAWKGYADI 155
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
V LLL GA + L++ + A D + + + +
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195
Score = 95.0 bits (237), Expect = 4e-25
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 38 GHLPI-------CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
GH I +++ N + G TALH AA I LL+++GA + +
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK-L 175
Query: 91 PLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESH 133
A +AA ++ A TL +++ + S E H
Sbjct: 176 AFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 90.0 bits (224), Expect = 3e-23
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 38 GHLPI-CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAA 96
G + S + LH AA+ N + VN + +AG T L+ A
Sbjct: 56 GRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS-TALYWAC 114
Query: 97 SAANEEIVTLLLDN-GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+++IV +L + ++ G TAL + + + I Q+LL
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 76.5 bits (189), Expect = 4e-18
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + T + V + PLH AA N +
Sbjct: 37 DIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAEQAESID-NPLHEAAKRGNLSWLR 90
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
LDN D G TAL + H+ I ++L
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF 126
Score = 75.7 bits (187), Expect = 7e-18
Identities = 11/96 (11%), Positives = 24/96 (25%), Gaps = 6/96 (6%)
Query: 47 PNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTL 106
P P G + A + L ++ +T T + S ++
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLI-- 61
Query: 107 LLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+ L + K + + L+
Sbjct: 62 ---PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD 94
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 99.3 bits (249), Expect = 7e-28
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL + + D N D G T LH AAR+ + + LL+ GA+VNA + G+ TP
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TP 71
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LH AA + E+V LLL+ GAD KD +G T L + + H ++ ++LLE
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 95.1 bits (238), Expect = 2e-26
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T LH AAR+ + + LL+ GA+VNA + G+ TPLH AA + E+V LLL+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 60
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLER 143
KD +G T L + + H ++ ++LLE
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 83.2 bits (207), Expect = 1e-21
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D G T LH AAR+ + + LL+ GA+VNA + G+ TPLH AA + E+V
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVK 118
Query: 106 LLLDNGA 112
LLL+ GA
Sbjct: 119 LLLEAGA 125
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 98.2 bits (246), Expect = 1e-27
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
G T LH AA++ + L+S+GA+VNA ++ G TPLH AA + EIV LL
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLL 61
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L GAD + DG T ++K H +I ++L +
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Score = 95.9 bits (240), Expect = 1e-26
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N G T LH AA++ + I LL+++GA+VNA ++ G TP H A + EIV
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGHHEIVK 92
Query: 106 LLLDNGADSTLKDSDGLTAL 125
LL GAD +
Sbjct: 93 LLDAKGADVNARSWGSSHHH 112
Score = 64.3 bits (158), Expect = 2e-14
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GH I + D N G T H A ++ + I LL ++GA+VNA +
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS-HH 111
Query: 92 LH 93
H
Sbjct: 112 HH 113
Score = 29.3 bits (67), Expect = 0.24
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 6/29 (20%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHY 60
GH I + D N H+
Sbjct: 86 GHHEIVKLLDAKGADVNARSWGSSHHHHH 114
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 102 bits (256), Expect = 2e-27
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
I + D + D+ G TAL+YA S N L + + + + G T
Sbjct: 73 EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ A + IV+ L + + L+ + + K H + +LL+
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDY 183
Score = 98.0 bits (245), Expect = 7e-26
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 42 ICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE 101
+ S D D G++A +YA NN + L++ GA N + PLH+AA+ +
Sbjct: 19 LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN---EFPLHQAATLEDT 75
Query: 102 EIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+IV +LL +G D + D G TAL + + + ++ +++
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117
Score = 82.6 bits (205), Expect = 4e-20
Identities = 9/98 (9%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ +H ++ + + +LL+ + N + A + E++
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L + + + + +I+++++E+
Sbjct: 213 ALFKYDINIYSANLENV-------LLDDAEIAKMIIEK 243
Score = 79.5 bits (197), Expect = 7e-19
Identities = 8/102 (7%), Positives = 26/102 (25%), Gaps = 9/102 (8%)
Query: 46 DPNIPDNAGYT-ALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
N ++ + + A + + + L N+ + + EI
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--------SANLENVLLDDAEIA 237
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
++++ + + ++ K L
Sbjct: 238 KMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279
Score = 69.1 bits (170), Expect = 5e-15
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G L +K + L + G + + A + N +V LL+ GA
Sbjct: 1 GMD-LSRINTWKSKQLKSFLS--SKDTFKADVHGH-SASYYAIADNNVRLVCTLLNAGAL 56
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLER 143
L + L ++ KI +ILL
Sbjct: 57 KNLL--ENEFPLHQAATLEDTKIVKILLFS 84
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 101 bits (253), Expect = 2e-27
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
DP+ P+ G TALH A N I LI+ GANVN+ G TPLH AAS + I
Sbjct: 45 NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW-TPLHCAASCNDTVIC 103
Query: 105 TLLLDNGADSTLKD-SDGLTALDR--SRKESHEKISQILLER 143
L+ +GA SDG TA ++ +E + + L +
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145
Score = 94.6 bits (236), Expect = 5e-25
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAAN--EEI 103
+ N PD+ G+T LH AA N+ IC+ L+ GA + A T + AT + +
Sbjct: 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC 138
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHE 134
T L D L +S + AL E +
Sbjct: 139 ATYLADVEQSMGLMNSGAVYALWDYSAEFGD 169
Score = 90.4 bits (225), Expect = 3e-23
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 46 DPNIPDNAGY---TALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEE 102
P A L AA + + + + + G T LH A AN
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALHNAICGANYS 68
Query: 103 IVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
IV L+ GA+ DS G T L + + I L++
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109
Score = 67.3 bits (165), Expect = 1e-14
Identities = 12/108 (11%), Positives = 21/108 (19%), Gaps = 11/108 (10%)
Query: 38 GHLPICSV------DPNIPD-NAGYTALHYAARSNN--KPICLLLISRGANVNAVTRAGQ 88
IC + G TA L ++ +
Sbjct: 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157
Query: 89 ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKI 136
L SA + ++ +D T + E
Sbjct: 158 -YALW-DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203
Score = 65.7 bits (161), Expect = 5e-14
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 72 LLISRGANVNAVTRAGQ--ATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSR 129
++ + + RA L AA E+V + D + + +G+TAL +
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 130 KESHEKISQILLER 143
++ I L+
Sbjct: 63 CGANYSIVDFLITA 76
Score = 54.2 bits (131), Expect = 8e-10
Identities = 9/73 (12%), Positives = 16/73 (21%), Gaps = 8/73 (10%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G+ + + ++ AL + V + T
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGESVTVLRRDGPEE-TD 191
Query: 92 LHRAASAANEEIV 104
AA E V
Sbjct: 192 WWWAALHGQEGYV 204
Score = 25.3 bits (56), Expect = 8.2
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 104 VTLLLDNGADSTLKDS---DGLTALDRSRKESHEKISQILLER 143
+ +L + L L + ++ Q ++
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 99.8 bits (250), Expect = 3e-27
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRG-ANVNAVTRAGQATPLHRAASAAN--- 100
D N + G AL AA + LL+ G +++ G T L A
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY-TALIEAVGLREGNQ 155
Query: 101 --EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
++IV LL++NGAD ++KD+ G TA+D + ++ + +IS+IL +
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 92.9 bits (232), Expect = 1e-24
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
L A + + K + +L V+ V G TPL+ A + EI L+D
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDR 61
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
GAD L++S + + + +I +L+
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLK 93
Score = 92.9 bits (232), Expect = 1e-24
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ D G T L+ A +N+ I LI RGA++N +P A + EI+
Sbjct: 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD-SPYLYAGAQGRTEIL 88
Query: 105 TLLLDNGA-DSTLKDSDGLTALDRSRKESHEKISQILLER 143
+L + D + G AL + ++ H ++LLE
Sbjct: 89 AYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Score = 68.2 bits (168), Expect = 4e-15
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 38 GHLPIC-------SVDPNIPDNAGYTALHYAARSNN-----KPICLLLISRGANVNAVTR 85
GH+ D + ++ GYTAL A + I LL+ GA+ +
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN 176
Query: 86 AGQATPLHRAASAANEEIVTLLL 108
+G+ T + A EI +L
Sbjct: 177 SGR-TAMDYANQKGYTEISKILA 198
Score = 25.9 bits (58), Expect = 5.1
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 116 LKDSDGLTALDRSRKESHEKISQILLER 143
+K + L+ + + +K+ +IL +
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDT 28
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 100 bits (252), Expect = 3e-27
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 46 DPNIPD-NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D + D +G + L +A +N+ + LL+ GANVNA +G + LH A+ +V
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS-SALHSASGRGLLPLV 199
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ +GADS+LK+ T L +R I + R
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 97.5 bits (244), Expect = 5e-26
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ +I +N T LH A + + LL++ GA+ A+ R GQ T H A + +
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLR 96
Query: 106 LLLDNGADSTL----KDSDGLTALDRSRKESHEKISQILLER 143
LLD+ A TL ++ DGLTAL + ++ Q+LLER
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Score = 97.1 bits (243), Expect = 7e-26
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
++D + G TALH A + + LL+ RGA+++AV +PL A + +
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
V LLL +GA+ + G +AL + + + L+
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204
Score = 94.8 bits (237), Expect = 6e-25
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISR----GANVNAVTRAGQATPLHRAASAANEEI 103
D G T LH A N P L++ G ++ Q TPLH A +
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSV 61
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTNI 151
V LL+ GA D G TA + + + LL+ + ++
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Score = 85.2 bits (212), Expect = 2e-21
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ N +G +ALH A+ P+ L+ GA+ + TPL A S +I+
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND-TPLMVARSRRVIDILR 233
Query: 106 LLLDNGA 112
A
Sbjct: 234 GKATRPA 240
Score = 52.5 bits (127), Expect = 4e-09
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGAN 79
D ++ + T L A I +R A+
Sbjct: 208 DSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 99.8 bits (250), Expect = 8e-27
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
D N + LH AR+ ++ + LL+ GA+ A G+ P
Sbjct: 145 QQRACVKKLLESGADVNQGKG-QDSPLHAVARTASEELACLLMDFGADTQAKNAEGK-RP 202
Query: 92 LHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+ + L L+ +L L + H KI++++L
Sbjct: 203 VELVPP--ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251
Score = 99.4 bits (249), Expect = 1e-26
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ + + T L+ A + + L+ GA+VN + +PLH A A+EE+
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD-SPLHAVARTASEELAC 183
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL+D GAD+ K+++G ++ ES ++Q+ LER
Sbjct: 184 LLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLER 219
Score = 98.3 bits (246), Expect = 4e-26
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
NI + LH A + +L+ GA VN VT TPL A + + + V
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN 86
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL +GA +SD + + + + H + L+
Sbjct: 87 LLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY 123
Score = 94.8 bits (237), Expect = 8e-25
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
+ ++ +H AA ++ LIS+G VN +T +PLH A + V +LL +GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV-SPLHEACLGGHLSCVKILLKHGA 60
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLE 142
+D T L + +LL+
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Score = 90.2 bits (225), Expect = 4e-23
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
P++ + +H AAR + LI+ G N++ TPL+ A V
Sbjct: 94 SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVK 151
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL++GAD + + L + + E+++ +L++
Sbjct: 152 KLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDF 188
Score = 79.4 bits (197), Expect = 5e-19
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D + G + P+ L + R + + + +I
Sbjct: 191 DTQAKNAEGKRPVELVPP--ESPLAQLFLEREGPPSLMQLCRL-RIRKCFGIQQHHKITK 247
Query: 106 LLLDNGADSTL 116
L+L L
Sbjct: 248 LVLPEDLKQFL 258
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 99.9 bits (250), Expect = 1e-26
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ + + T L+ A + + L+ GA+VN + +PLH A+EE+
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD-SPLHAVVRTASEELAC 239
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL+D GAD+ K+++G ++ ES + LER
Sbjct: 240 LLMDFGADTQAKNAEGKRPVELVPPESPLAQ--LFLER 275
Score = 96.4 bits (241), Expect = 3e-25
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAAS 97
G + S + ++ +H AA ++ LIS+G VN +T +PLH A
Sbjct: 44 GIRLL-SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV-SPLHEACL 101
Query: 98 AANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ V +LL +GA +D T L + +LL+
Sbjct: 102 GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Score = 94.5 bits (236), Expect = 2e-24
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
NI + LH A + +L+ GA VN VT TPL A + + + V
Sbjct: 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN 142
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LLL +GA +SD + + + + H + L+
Sbjct: 143 LLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY 179
Score = 88.3 bits (220), Expect = 3e-22
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
P++ + +H AAR + LI+ G N++ TPL+ A V
Sbjct: 150 SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVK 207
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL++GAD + + L + + E+++ +L++
Sbjct: 208 KLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDF 244
Score = 74.1 bits (183), Expect = 6e-17
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N + LH R+ ++ + LL+ GA+ A G+ P+ + +
Sbjct: 215 DVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGK-RPVELVPPESPLAQL- 271
Query: 106 LLLDNGAD 113
L GA
Sbjct: 272 FLEREGAS 279
Score = 71.4 bits (176), Expect = 7e-16
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 42 ICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE 101
+ S+D G + L+S +AV + +P+H AA ++
Sbjct: 21 MASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPLMGDAV--SDW-SPMHEAAIHGHQ 72
Query: 102 EIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ L+ G + +D ++ L + H +ILL+
Sbjct: 73 LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Score = 50.6 bits (122), Expect = 2e-08
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA 82
D + G + + L L GA++
Sbjct: 247 DTQAKNAEGKRPVELVPP-ESPLAQLFLEREGASLPK 282
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 98.7 bits (247), Expect = 2e-26
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N N G T LH A + LI GA+V + Q PLHRAAS + +++
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-IPLHRAASVGSLKLI 156
Query: 105 TLLLDNG-ADSTLKDSDGLTALDRSRKESHEKISQILLER 143
LL G + +D G T L + E H + +L+E+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 93.3 bits (233), Expect = 2e-24
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGAN-VNAVTRAGQATPLHRAASAANEEIV 104
I D LH AA + + LL G + VN + G TPL A + + +
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAA 190
Query: 105 TLLLDN-GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
LL++ GA+ L D+ G A D + +E++ + L
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKKFFLN 226
Score = 92.1 bits (230), Expect = 5e-24
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA---VTRAGQATPLHRAASAANEE 102
D G LH++ I L+S+ NVN +G TP H A S N E
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW-TPFHIACSVGNLE 86
Query: 103 IVTLLLDN--GADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+V L D D + G+T L + + ++SQ L+E
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Score = 84.8 bits (211), Expect = 2e-21
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 54 GYTALHYAARSNNKP-ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
LH A N + LL S+ + + + G+ PLH + S EI + LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKME 60
Query: 113 D---STLKDSDGLTALDRSRKESHEKISQILLER 143
+ D G T + + ++ + L +R
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
Score = 72.9 bits (180), Expect = 1e-16
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISR-GANVNAVTRAGQATPLHRAASAANEEIV 104
N D G+T L +A + +LL+ + GA + V G A NE++
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAED---VALNEQVK 221
Query: 105 TLLLDN 110
L+N
Sbjct: 222 KFFLNN 227
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 98.4 bits (246), Expect = 2e-26
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 42 ICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQA------------ 89
+ G TALH A + N + L++RGA+V+A
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
PL AA +EEIV LL+++GAD +DS G T L + ++ + +
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Score = 88.4 bits (220), Expect = 1e-22
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
P+ G L +AA ++ I LLI GA++ A G T LH N+
Sbjct: 113 RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFAC 171
Query: 106 ----LLLDNGAD------STLKDSDGLTALDRSRKESHEKISQILLER 143
LLL + ++ GLT + E + + Q L+++
Sbjct: 172 QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 86.1 bits (214), Expect = 1e-21
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 54 GYTALHYAARSNNKP-ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGA 112
+ L AA+ N+ + LL G V+ G+ T LH AA N E +L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAP 61
Query: 113 D-----STLKDSDGLTALDRSRKESHEKISQILLER 143
+ T + +G TAL + + + + LL R
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Score = 85.3 bits (212), Expect = 2e-21
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANV-----NAVTRAGQATPLHRAASAAN 100
+ + G TALH AA +N ++L+ + + GQ T LH A N
Sbjct: 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAVINQN 87
Query: 101 EEIVTLLLDNGADSTLKDSD-------------GLTALDRSRKESHEKISQILLER 143
+V LL GA + + + G L + E+I ++L+E
Sbjct: 88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143
Score = 81.1 bits (201), Expect = 8e-20
Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 9/85 (10%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICL----LLISRGANVNAVTRAGQA-----TPLHRAA 96
D D+ G T LH NK LL+S + + TP A
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Query: 97 SAANEEIVTLLLDNGADSTLKDSDG 121
N + L+
Sbjct: 206 VEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 55.7 bits (135), Expect = 2e-10
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQ 88
+P+N G T A N + L+ + ++ A
Sbjct: 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 98.5 bits (246), Expect = 2e-26
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQ--A 89
GH I + N D+ G+T LH AA NN +C L+ GA V A+T + A
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKIS 137
+ L + + + AL ++ +++
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188
Score = 98.5 bits (246), Expect = 2e-26
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP++P++ G TALH A + + I L+ G NVNA G TPLH AAS N ++
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVCK 120
Query: 106 LLLDNGAD---STLKDSDGLTALDRSRKESHEKISQILLE 142
L+++GA T D +E + + SQ L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Score = 94.2 bits (235), Expect = 1e-24
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 50 PDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLD 109
P+ G +L R+N + I+ G V L ++ ++V ++
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPL-ALLLDSSLEGEFDLVQRIIY 58
Query: 110 NGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
D +L + +G+TAL + H +I + L++
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 99 bits (250), Expect = 5e-26
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 4/107 (3%)
Query: 37 PGHLPICS-VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRA 95
PG + ++ D+ +H AAR LI G + R G T LH A
Sbjct: 2 PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLA 60
Query: 96 ASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
+ L G G + + + + L+E
Sbjct: 61 CKFGCVDTAKYLASVGEV--HSLWHGQKPIHLAVMANKTDLVVALVE 105
Score = 99.2 bits (248), Expect = 8e-26
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISR-----GANVNAVTRAGQATPLHRAASAAN 100
P D A T L A N+ L++ ++ + G + LH A
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINW 223
Query: 101 EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
E++ ++ G D ++D++ L S + + +++ LL++
Sbjct: 224 EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266
Score = 96.1 bits (240), Expect = 1e-24
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNN--KPICLLLISRGANVNAVTRAGQATPLHRA 95
+ + ++ G TALH+ + +L+ GA+ A +A + TPL RA
Sbjct: 122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE-TPLMRA 180
Query: 96 ASAANEEIVTLLLD-----NGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
N E + L++D + + G + L + + E ++ +E
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232
Score = 94.6 bits (236), Expect = 4e-24
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 28 ILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAG 87
+++ T + + + G + LH+A N + + + + G +VN
Sbjct: 191 LMMDTVPSKSS------LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH 244
Query: 88 QATPLHRAASAANEEIVTLLLD-------------NGADSTLKDSDGLTALDRSRKESHE 134
PL+ + AA + LL NG L + + S +
Sbjct: 245 T-VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303
Query: 135 KISQILLER 143
++ Q+L E+
Sbjct: 304 EVLQLLQEK 312
Score = 94.2 bits (235), Expect = 7e-24
Identities = 9/81 (11%), Positives = 19/81 (23%), Gaps = 1/81 (1%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
+ AA + + + LL + V G + A +
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA-GGAVKRKKKAAPAVKR 340
Query: 106 LLLDNGADSTLKDSDGLTALD 126
+ L A + +
Sbjct: 341 MKLAPSAPVRTRSRSRARSSA 361
Score = 93.4 bits (233), Expect = 1e-23
Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA------------VTRAGQATPLH 93
D N+ DN L+ + R+ + L+ + R +
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295
Query: 94 RAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
AA + +E++ LL + + + G + +K++ + ++ L
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344
Score = 73.0 bits (180), Expect = 3e-16
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE--EIVTLLL 108
G + + + + GQ T LH E E++ +L+
Sbjct: 108 KERGQMPESLLNECDEREVN------EIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILV 160
Query: 109 DNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
GA T KD T L R+ + + + ++++
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200
Score = 61.4 bits (150), Expect = 4e-12
Identities = 5/50 (10%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRA 95
+ N G + + + ++ A V +R+ +
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRA-RSSAVS 363
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 93.4 bits (233), Expect = 7e-26
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
+ L AAR+ +L++ GA+V A + G TPLH AA + E+V LLL+
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLEA 79
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQIL 140
GAD +D G TA D S +E +++IL
Sbjct: 80 GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 74.5 bits (184), Expect = 2e-18
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 61 AARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSD 120
+ ++ L+ RG+++ + L AA A ++ V +L+ NGAD KD +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLG-KKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 121 GLTALDRSRKESHEKISQILLER 143
G T L + + H ++ ++LLE
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEA 79
Score = 64.9 bits (159), Expect = 9e-15
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
G + D D G T LH AAR+ + + LL+ GA+V A + G+ T
Sbjct: 35 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TA 93
Query: 92 LHRAASAANEEIVTLL 107
+ NE++ +L
Sbjct: 94 FDISIDNGNEDLAEIL 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 92.8 bits (232), Expect = 7e-26
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
G T LH AAR+ + + LL+ GA+VNA + G+ TPLH AA + E+V LLL+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 60
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLE 142
KD +G T L + + H ++ ++LLE
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 81.6 bits (203), Expect = 2e-21
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
GHL + + D N D G T LH AAR+ + + LL+ GA+VNA + G+ TP
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TP 71
Query: 92 LHRAASAANEEIVTLLLDNGA 112
LH AA + E+V LLL+ GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGA 92
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 98.9 bits (247), Expect = 2e-25
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLIS-RGANVNAVTRAGQATPLHRAASAANE 101
+ + G TALHYAA+ +N PI L+ +G+N + G+ TP+ AA
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TPIMLAAQEGRI 326
Query: 102 EIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
E+V L+ GA D+ TA ++ +H I I
Sbjct: 327 EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 90.0 bits (224), Expect = 3e-22
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D N D T L A + + + L+ GA+ ++ + + LH+AA+ + ++
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER-SALHQAAANRDFGMMV 216
Query: 106 LLLDN---GADSTLKDSDGLTAL 125
+L++ D D +G+TAL
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTAL 239
Score = 88.1 bits (219), Expect = 1e-21
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 38 GHLPIC------SVDPNIPDNAGYTALHYAARSNNKPICLLLI--------SRGANVNAV 83
G I SV+ P + T LH+ A +++ LI + GA+VNA+
Sbjct: 104 GSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM 162
Query: 84 TRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
TPL A A +V L+ GAD T+ + +AL ++ + +L
Sbjct: 163 DCDEN-TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLN 220
Score = 88.1 bits (219), Expect = 1e-21
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 46 DPNIPDNAGYTALHYAARSNNK---PICLLLISRGANVNAVTRAGQA-------TPLHRA 95
D D G TAL A + + LL+ +GA V+ A + T LH A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 96 ASAANEEIVTLLL-DNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
A +N IV L+ + G++ +D DG T + + +E ++ L+++ +
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338
Score = 83.8 bits (208), Expect = 4e-20
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 38 GHLPICSV-------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
++PI + + D G T + AA+ + + LI +GA+V AV T
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH-T 348
Query: 91 PLHRAASAANEEIVTLLLDNGAD 113
A + + IV + +
Sbjct: 349 ARQLAQANNHHNIVDIFDRCRPE 371
Score = 80.8 bits (200), Expect = 6e-19
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
P P+ LH A + + I + N+ R + T LH AS ++ E
Sbjct: 86 IPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNR-TVLHWIASNSSAEKSE 142
Query: 106 LLL--------DNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L+ GAD D D T L + ++ L++
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 188
Score = 77.3 bits (191), Expect = 1e-17
Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 3/94 (3%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLL 107
N + + N + + LH A+ + I +
Sbjct: 55 NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESP-IKLHTEAA-GSYAITEPI 112
Query: 108 LDNGADSTLKDSDGLTALDRSRKESHEKISQILL 141
+ T L S + S+ L+
Sbjct: 113 TRESVNII-DPRHNRTVLHWIASNSSAEKSEDLI 145
Score = 48.8 bits (117), Expect = 1e-07
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANV 80
D +TA A +N+ I +
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 96.0 bits (240), Expect = 4e-25
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGAD 113
L A ++ + + L+ GANVN G TPLH A + E+IV LLL +GAD
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 114 STLKDSDGLTALDRSRKESHEKISQILLER 143
L+ +G T + K+ ++ L +
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Score = 94.5 bits (236), Expect = 2e-24
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 46 DPNIPDN-AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ N + G+T LH A + + + I LL+ GA+ + G TP AA A + +++
Sbjct: 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAIAGSVKLL 88
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
L L GAD D G TA + K + L +R
Sbjct: 89 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Score = 94.1 bits (235), Expect = 3e-24
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICL----LLISRGANVNAVTRAGQATPLHRAASAANE 101
D N DN G AL +A S++ LL+ GA+VN G+ TPL A +
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHL 232
Query: 102 EIVTLLLDN-GADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+V LL+ + DSDG TAL + + +KI+++L +R
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Score = 91.8 bits (229), Expect = 2e-23
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQA---------TPLHRAA 96
D N D G+TA AA L RGANVN + + T L AA
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 97 SAANEEIVTLLLDN-GADSTLKDSDGLTAL----DRSRKESHEKISQILLER 143
+ E++ +LLD GAD D+ G AL S E I+ +LL+
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Score = 91.4 bits (228), Expect = 3e-23
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
DP + G T AA + + + L +S+GA+VN G T AA + +
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALK 122
Query: 106 LLLDNGADSTLKD----------SDGLTALDRSRKESHEKISQILL 141
L GA+ L+ G TAL + ++ H ++ +ILL
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Score = 89.1 bits (222), Expect = 2e-22
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLIS-RGANVNAVTRAGQATPLHRAASAAN---- 100
D G TAL AA + + +L+ GA+VNA G+ L A +++
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDSDV 198
Query: 101 EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
E I LLLD+GAD ++ G T L + ++ H + Q LLE+
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 84.8 bits (211), Expect = 7e-21
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPIC-LLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
D N+ G T L A + + LL +N G+ T L A ++I
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIA 269
Query: 105 TLLLDNGADSTLKD 118
LL GA + D
Sbjct: 270 ELLCKRGASTDCGD 283
Score = 56.3 bits (137), Expect = 2e-10
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA 82
++ N D+ G TAL A K I LL RGA+ +
Sbjct: 244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 94.9 bits (236), Expect = 4e-25
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
D TALH+A + + I L+ G VN AG +PLH AASA +EIV
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVK 90
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
LL GA + +G T L + ++ +I+ +LLE ++
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Score = 87.6 bits (217), Expect = 2e-22
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 52 NAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDNG 111
+ + A + +++ + + + T LH A SA + EIV LL G
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLG 63
Query: 112 ADSTLKDSDGLTAL 125
KD G + L
Sbjct: 64 VPVNDKDDAGWSPL 77
Score = 85.3 bits (211), Expect = 3e-21
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVT 105
N D+AG++ LH AA + I L+ +GA+VNAV + G TPLH AAS EI
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAV 123
Query: 106 LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQT 149
+LL+ GA+ KD TA+ R+ + + K+ ILL +
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Score = 75.7 bits (186), Expect = 8e-18
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
N + G T LHYAA N I ++L+ GAN +A T +HRAA+ N ++V
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMV 155
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
+LL A + ++D++G T L + E + ++ L+ + + +
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Score = 69.1 bits (169), Expect = 3e-15
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+P+ D+ TA+H AA N + +L+ A+ N G TPLH A E
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEERVEEA 188
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L+ GA +++ + T L ++ + L
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLA 224
Score = 59.9 bits (145), Expect = 6e-12
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
NI D G T LH A L+++GA++ + + TPL A ++
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKG--GLGLI 219
Query: 105 TLLLDNGAD 113
L G +
Sbjct: 220 LKRLAEGEE 228
Score = 39.1 bits (91), Expect = 2e-04
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
I + T L A + L ++ G +
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 92.4 bits (230), Expect = 1e-24
Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 20/129 (15%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNK------PICLLLISRGANVNAVTR 85
I D G T + +C + + +GA++ A+ +
Sbjct: 53 ARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112
Query: 86 AGQATPLHRAASAANEEIV-------TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQ 138
+ + + + + +G +KD GLTAL+ ++ +
Sbjct: 113 PYK-IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171
Query: 139 ILLERFSDL 147
++ +
Sbjct: 172 MMEDYIKKY 180
Score = 82.0 bits (203), Expect = 1e-20
Identities = 9/83 (10%), Positives = 19/83 (22%), Gaps = 8/83 (9%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPIC-------LLLISRGANVNAVTRAGQATPLHRAAS 97
D + + L+ G + + G T L
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL-TALEFVKR 163
Query: 98 AANEEIVTLLLDNGADSTLKDSD 120
+ ++ D LK++
Sbjct: 164 CQKPIALKMMEDYIKKYNLKENS 186
Score = 79.3 bits (196), Expect = 1e-19
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE------EIV 104
N Y L I + LI++GA++ + T+ G T E+
Sbjct: 39 SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGT-TLFFPLFQGGGNDITGTTELC 97
Query: 105 TLLLDNGADSTLKDSDGLTAL 125
+ L+ GAD T +
Sbjct: 98 KIFLEKGADITALYKPYKIVV 118
Score = 67.4 bits (165), Expect = 5e-15
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQA--TPLHRAASAANEEIVTLLLDNG 111
Y + AA L L +G L A +I L++ G
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 112 ADSTLKDSDGLTALDRSRKESHEKIS------QILLER 143
AD + +G T + I+ +I LE+
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 87.5 bits (217), Expect = 5e-22
Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
ILL + G TALH A K LL+ +GA+V+
Sbjct: 61 RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120
Query: 82 AVTRAGQA-------------TPLHRAASAANEEIVTLLLDNG---ADSTLKDSDGLTAL 125
A R PL AA IV L +NG AD +DS G T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 74.8 bits (184), Expect = 3e-17
Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNKPICLLLISRG---ANVNAVTRAGQATPLHRAASAA 99
D G L AA +N I L G A++ G T LH + A
Sbjct: 129 QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN-TVLHALVAIA 187
Query: 100 NE---------EIVTLLLDNGAD-------STLKDSDGLTALDRSRKESHEKISQILLER 143
+ ++ LLL A L ++DGL+ L + K I Q ++ R
Sbjct: 188 DNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247
Score = 59.4 bits (144), Expect = 1e-11
Identities = 23/121 (19%), Positives = 34/121 (28%), Gaps = 29/121 (23%)
Query: 51 DNAGYTALHYAA---RSNNKPICLLLISRG-----------ANVNAVTRAGQATPLHRAA 96
+ G T L A + +L+ + V GQ T LH A
Sbjct: 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ-TALHIAI 101
Query: 97 SAANEEIVTLLLDNGADSTLKDS--------------DGLTALDRSRKESHEKISQILLE 142
+ V LL++ GAD + G L + + I L E
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161
Query: 143 R 143
Sbjct: 162 N 162
Score = 59.4 bits (144), Expect = 2e-11
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 15/85 (17%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNK---------PICLLLISRGANVNAVTRAGQA----- 89
D D+ G T LH + + LL+ + A + T
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225
Query: 90 -TPLHRAASAANEEIVTLLLDNGAD 113
+PL AA I ++
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 53.2 bits (128), Expect = 2e-09
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 21/109 (19%)
Query: 56 TALHYAARSNN----KPICLLLISRGANVNAVTRAGQA---TPLHRAA---SAANEEIVT 105
L + + + L++ + + T L +A SA + +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 106 LLLDNGADS-----------TLKDSDGLTALDRSRKESHEKISQILLER 143
+LLD + G TAL + + + ++L+E+
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115
Score = 49.8 bits (119), Expect = 4e-08
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNA 82
+ +N G + L AA++ I +I R A
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 87.1 bits (216), Expect = 9e-22
Identities = 32/136 (23%), Positives = 42/136 (30%), Gaps = 16/136 (11%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
+LL R + G TALH A N + LL+ GA+V
Sbjct: 69 QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
Query: 82 AVTRAGQA-------------TPLHRAASAANEEIVTLLLDNG---ADSTLKDSDGLTAL 125
A PL AA IV LL N AD + +DS G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Query: 126 DRSRKESHEKISQILL 141
+ + +
Sbjct: 189 HALVEVADNTVDNTKF 204
Score = 74.4 bits (183), Expect = 4e-17
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 20/117 (17%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRG---ANVNAVTRAGQATPLHRAASAANEE 102
G L AA +N I L+ A+++A G T LH A+
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN-TVLHALVEVADNT 198
Query: 103 IVT----------------LLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
+ L + + GLT L + + +L+R
Sbjct: 199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Score = 61.3 bits (149), Expect = 3e-12
Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 24/105 (22%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPI----------------CLLLISRGANVNAVTRAGQA 89
D + D+ G T LH + + L R G
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL- 234
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHE 134
TPL AAS+ ++ +L + H
Sbjct: 235 TPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272
Score = 59.4 bits (144), Expect = 1e-11
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 21/119 (17%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPIC-------LLLISRGANVNAVTRAGQATPLHRAASA 98
P ++ A +N R + T L +A
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 99 A---NEEIVTLLLDNGADS-----------TLKDSDGLTALDRSRKESHEKISQILLER 143
+ + LLLD + T G TAL + + + + +L+E
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 84.3 bits (208), Expect = 2e-20
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 40 LPICSVDPNIP-DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASA 98
P ++ NIP D G T LH+ N + L+ G+N G+ + L +A +
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE-SCLVKAVKS 174
Query: 99 AN----EEIVTLLLDNGADSTLKDSDGLTAL----DRSRKESHEKISQILLE 142
N LL L+DS T L S ++ L+
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226
Score = 72.4 bits (177), Expect = 4e-16
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 1/134 (0%)
Query: 19 LPEHIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNN-KPICLLLISRG 77
+ L +L + P L S + N + + + + + + +
Sbjct: 61 MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 120
Query: 78 ANVNAVTRAGQATPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKIS 137
N+N TPLH S AN E+V L+ +G++ D+ G + L ++ K + S
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS 180
Query: 138 QILLERFSDLQTNI 151
L +
Sbjct: 181 GTFEALLDYLYPCL 194
Score = 67.0 bits (163), Expect = 4e-14
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAA 96
I + N D+ G T L+ AAR N I L+ GA+ ++G P+ A
Sbjct: 267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL-RPVDFGA 324
Score = 65.0 bits (158), Expect = 2e-13
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 39 HLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISR----GANVNAVTRAGQATPLHR 94
+ P + K L + +NA G T L+
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD-TCLNI 289
Query: 95 AASAANEEIVTLLLDNGADSTLKDSDGLTALD 126
AA N IV LLD GAD + + GL +D
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVD 321
Score = 60.4 bits (146), Expect = 9e-12
Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 17/123 (13%)
Query: 45 VDPNIPDNAGYTALHYAARSNN----KPICLLLISRGANVNAVTRAGQATPLHRAASAAN 100
+ DN G + L A +S N LL + + T LH +
Sbjct: 155 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR-TILHHIIITSG 213
Query: 101 ------------EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
+ ++ ++ ++ + + + L+ +
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273
Query: 149 TNI 151
+
Sbjct: 274 NML 276
Score = 44.2 bits (104), Expect = 4e-06
Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
V+ N L + + L + +N N+ + H + + +E+
Sbjct: 53 VVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112
Query: 104 VTLLLDNGADSTLK-DSDGLTALDRSRKESHEKISQILLERFSD 146
+ + + D G T L ++ ++ + L++ S+
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 82.5 bits (204), Expect = 4e-20
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Query: 22 HIPLTIILLTTGRYPPGHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVN 81
+ LL + P+ + G++ALH A + LL+ GA+V+
Sbjct: 58 VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117
Query: 82 AVTRAGQA------------TPLHRAASAANEEIVTLLLDNG---ADSTLKDSDGLTAL 125
PL AA ++VT LL+N A DS G T L
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176
Score = 77.5 bits (191), Expect = 2e-18
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 20/117 (17%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRG---ANVNAVTRAGQATPLHRAASAAN-- 100
G L AA + + L+ A++ A G T LH A+
Sbjct: 128 HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN-TVLHALVMIADNS 186
Query: 101 --------------EEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
++ L + + GLT L + KE +I + +L+R
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 66.0 bits (161), Expect = 5e-14
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 51 DNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIVTLLLDN 110
++ +AL + L G TPL AA EI +L
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL-TPLKLAAKEGKIEIFRHILQR 243
Query: 111 GAD 113
Sbjct: 244 EFS 246
Score = 59.4 bits (144), Expect = 1e-11
Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 28/127 (22%)
Query: 44 SVDPNIPDNAGYTALHYAA---RSNNKPICLLLISRG-----------ANVNAVTRAGQA 89
+ + G T L A + + L+ A G
Sbjct: 33 TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGH- 91
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSR-------------KESHEKI 136
+ LH A + + V LL++NGAD L+ + +
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 137 SQILLER 143
LLE
Sbjct: 152 VTYLLEN 158
Score = 50.6 bits (121), Expect = 2e-08
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 38 GHLPICSV------DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAV 83
G L + + I ++ G T L AA+ I ++ R + A
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250
Score = 31.3 bits (71), Expect = 0.094
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 90 TPLHRAASAANEEIVTLLLD--------NGADSTLKDSDGLTAL---DRSRKESHEKISQ 138
L S E +T LL+ + + S G T L + ++
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 139 ILLERFSD 146
LL+ D
Sbjct: 64 PLLQIDKD 71
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 79.3 bits (195), Expect = 1e-18
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNNK---PICLLLISRGANVNAVTRAGQATPLHR 94
G + LH A + N+ P+ +I G +++A G T LH
Sbjct: 174 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-TALHY 232
Query: 95 AASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
AA + + LLL A + G TALD +RK+ H++ ++L +
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 53.1 bits (127), Expect = 3e-09
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 59 HYAARSNNKPICLLLISRGANVN-----AVTRAGQATPLHRAASAANE---EIVTLLLDN 110
A + + L + G + +A + LH A AN+ +V ++ N
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 111 GADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQ 148
G K +DG TAL + + ++LL+ + +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Score = 28.0 bits (62), Expect = 1.3
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGAN 79
+ AG TAL A + ++K LL A
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 77.3 bits (190), Expect = 4e-18
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 39 HLPICSVDPNIPDNA------GYTALHYAARSNNK---PICLLLISRGANVNAVTRAGQA 89
VD TALH A RS ++ I L+ N++ T G
Sbjct: 148 QAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS- 206
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
T LH N E + LLL A + + G T LD +++ HE ++L +
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 45.0 bits (106), Expect = 2e-06
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQA-----TPLHRAASAAN 100
+ A +L A ++ + L + G ++ T LH A + +
Sbjct: 122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD 181
Query: 101 E---EIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
IV L+ N + + G TAL + + ++LL
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Score = 29.6 bits (66), Expect = 0.39
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGAN 79
I + +G T L A R ++ LL +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 76.0 bits (186), Expect = 3e-17
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 44 SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEI 103
V+ T L A +N+ C L+ GANVN AG+ PLH A + +
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR-GPLHHATILGHTGL 283
Query: 104 VTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSDLQTN 150
L L GAD +DS+G L + + ++ I +L
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 69.9 bits (171), Expect = 5e-15
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 43 CSVDPNIPDNAGYTALHYAARSNNK---PICLLLISRGANVNAVTRAGQATPLHRAASAA 99
+ LH A + N+ P+ +I G +++A G T LH AA
Sbjct: 160 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-TALHYAALYN 218
Query: 100 NEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQIL 140
+ + LLL A + G TALD +RK+ H++ ++L
Sbjct: 219 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 53.0 bits (127), Expect = 4e-09
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 38 GHLPIC------SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATP 91
LP+ + G TALHYAA N LL+ A V V AG+ T
Sbjct: 185 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TA 243
Query: 92 LHRAASAANEEIVTLL 107
L A ++E LL
Sbjct: 244 LDIARKKHHKECEELL 259
Score = 49.5 bits (118), Expect = 6e-08
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 58 LHYAARSNNKPICLLLISRGANVNAVTRAGQA-----TPLHRAASAA---NEEIVTLLLD 109
L A + + L + G + A LH A A + +V ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 110 NGADSTLKDSDGLTALDRSRKESHEKISQILLER 143
NG K +DG TAL + + ++LL+
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 64.2 bits (156), Expect = 4e-13
Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 4/106 (3%)
Query: 46 DPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQ-ATPLHRAASAANEEIV 104
+ Y A AA + + + L + AA + ++
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 179
Query: 105 TLLLDNGADSTLKD--SDGLTALDR-SRKESHEKISQILLERFSDL 147
L + ++ A + H + LL+ L
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225
Score = 58.4 bits (141), Expect = 4e-11
Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 15/113 (13%)
Query: 38 GHLPICSVDPNIPDNAGYTALHYAARSNNKPICLLL--------ISRGANVNAVTRAGQA 89
G + + G+ L R N++ + + I A +
Sbjct: 265 GVFDLVTKSE---CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN- 320
Query: 90 TPLHRAASAANEEIVTLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLE 142
L A N+ LLL + L ++ + + + LE
Sbjct: 321 ELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVALE 370
Score = 54.6 bits (131), Expect = 1e-09
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 6/108 (5%)
Query: 48 NIPDNAGYTALHYAARSNNKP---ICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
+ AA + LL++ V + AA + ++
Sbjct: 86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY-QAFRLAAENGHLHVL 144
Query: 105 TLLLDNGADSTLKD--SDGLTALDRSRKESHEKISQILLERFSDLQTN 150
L + + ++ A + + H + L E T
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 192
Score = 53.8 bits (129), Expect = 2e-09
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 45 VDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANEEIV 104
L A R N+ C LL+S + + +A + + ++
Sbjct: 310 APTATIPGDANELLRLALRLGNQGACALLLSIPSVLA----LTKANNYYINETGGRLDLR 365
Query: 105 TLLLDNGA 112
+ L++
Sbjct: 366 AVALEHHH 373
Score = 50.3 bits (120), Expect = 3e-08
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 10/94 (10%)
Query: 38 GHLPIC--------SVDPNIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQ- 88
GHL + + + Y A AA + + + L +
Sbjct: 139 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198
Query: 89 ATPLHRAASAAN-EEIVTLLLDNGADSTLKDSDG 121
AA ++ LLD +
Sbjct: 199 YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232
Score = 45.7 bits (108), Expect = 1e-06
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 48 NIPDNAGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAASAANE---EIV 104
N+ L+YA + N L S + AA + +
Sbjct: 59 NMEQVRQLLCLYYAHYNRNA---KQLWSDAHKKGIKSE----VICFVAAITGCSSALDTL 111
Query: 105 TLLLDNGADSTLKDSDGLTALDRSRKESHEKISQILLERFSD 146
LLL + + ++ A + + H + L E
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 153
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 34.4 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
A +TA YAAR+ KP+ L G N + GQ T
Sbjct: 19 AAHTAAIYAARAELKPL---LFE-GWMANDIAPGGQLT 52
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET:
FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 34.1 bits (79), Expect = 0.010
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRAGQAT 90
A +TA Y AR+ KPI L G N + GQ T
Sbjct: 33 AAHTAAIYLARAEIKPI---LYE-GMMANGIAAGGQLT 66
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 32.5 bits (75), Expect = 0.034
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 53 AGYTALHYAARSNNKPICLLLISRG 77
AG TA Y R+ L++ +G
Sbjct: 19 AGLTAAIYTGRAQLST---LILEKG 40
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 32.5 bits (75), Expect = 0.036
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGA 78
AG +A YA R K +++ +G
Sbjct: 15 AGLSAGLYATRGGLKN--VVMFEKGM 38
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD;
2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB:
1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 32.5 bits (75), Expect = 0.038
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 53 AGYTALHYAARSNNKPI 69
AGYTA YAAR+N +P+
Sbjct: 16 AGYTAAVYAARANLQPV 32
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 32.1 bits (74), Expect = 0.044
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 53 AGYTALHYAARSNNKPI 69
AGYTA YAAR+ P+
Sbjct: 25 AGYTAALYAARAQLAPL 41
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 31.4 bits (72), Expect = 0.062
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 53 AGYTALHYAARSNNKPICLLLISRG 77
+G +A + AR+ K L++ G
Sbjct: 12 SGLSAALFLARAGLKV---LVLDGG 33
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 30.9 bits (71), Expect = 0.13
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 53 AGYTALHYAARSNNKPICLLLISRG 77
AG +A YA R K +L +G
Sbjct: 12 AGLSAGLYATRGGVKN--AVLFEKG 34
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 30.6 bits (70), Expect = 0.15
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 53 AGYTALHYAARSNNKPI 69
A Y A Y+AR K +
Sbjct: 26 AAYGAALYSARYMLKTL 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.16
Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 60/196 (30%)
Query: 9 WNDLPTCKPILPEHIPLTIILLTTGRYPPGHLPICSVDPNIPD--NAGYTALHYAARSNN 66
W +L C PE + L ++ + P NI ++ L +S
Sbjct: 186 WLNLKNCNS--PETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 67 KPICL---------------------LLISRGANVNAVTRAGQATPL---HRAASAANEE 102
CL LL +R V A T + H + + +E
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 103 IVTLLLD--NGADSTL-----------------KDSDGLTALDRSRKESHEKISQIL--- 140
+ +LLL + L DGL D + + +K++ I+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 141 ---LE------RFSDL 147
LE F L
Sbjct: 363 LNVLEPAEYRKMFDRL 378
Score = 27.1 bits (59), Expect = 3.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 113 DSTLKDSDGLTALDRSRKESHEKISQILLE 142
D D+ + SR + + K+ Q LLE
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 29.0 bits (66), Expect = 0.49
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 53 AGYTALHYAARSNNKPI 69
AG A Y+AR +
Sbjct: 12 AGAAAAIYSARKGIRTG 28
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 28.3 bits (64), Expect = 1.0
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRA 86
AG +A R+ LL+ G N
Sbjct: 13 AGLSAALQLGRARKNI---LLVDAGERRNRFASH 43
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 53 AGYTALHYAARSNNKPICLLLISRG 77
AG++A YAARS ++ +
Sbjct: 27 AGFSAAVYAARSGFSV---AILDKA 48
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 27.7 bits (62), Expect = 2.0
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 53 AGYTALHYAARSNNKPI 69
AG A Y+AR +
Sbjct: 223 AGAAAAVYSARKGIRTG 239
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 26.7 bits (60), Expect = 3.3
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 53 AGYTALHYAARSNNKPICLLLISRGANVNAVTRA 86
AG A R+ + L N N VT+
Sbjct: 17 AGLNASLVLGRARKQI---ALFDNNTNRNRVTQN 47
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 25.7 bits (57), Expect = 5.7
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 54 GYTALHYAARSNNKPICLLLISRGANVNAVTRAGQATPLHRAA-SAANEEIVTLLLDNGA 112
G +H A+ + L + G +AA +++
Sbjct: 95 GRLIMHGLAQGAFSRLNLRGA-----IIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPI 149
Query: 113 DSTLKD 118
+ L D
Sbjct: 150 EHVLSD 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,233,605
Number of extensions: 123477
Number of successful extensions: 1096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 307
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)