BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3342
(61 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
G+ + A+DALL W + T+ YP V V +FT+SWRDGLAFNAI+H++
Sbjct: 1 GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKH 48
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 4 WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
W+I+ ISDI V G +++A++ LL W++R Y G+R +FTSSWRDG FNAII
Sbjct: 115 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 174
Query: 59 HRN 61
HR+
Sbjct: 175 HRH 177
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 4 WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
W+I+ ISDI V G +++A++ LL W++R Y G+R +FTSSWRDG FNAII
Sbjct: 168 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAII 227
Query: 59 HRN 61
HR+
Sbjct: 228 HRH 230
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
At 1.1 Angstrom Resolution
Length = 109
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
SA+DALL W + T+ YP V + +FT+SWRDG+AFNA+IH++
Sbjct: 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH 44
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
SA+DALL W + T+ YP V + +FT+SWRDG+AFNA+IH++
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH 43
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 4 WSIL----ISDI-VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
W+I+ ISDI V G +++A++ LL W++R Y G+R +FT+SWRDG FNAII
Sbjct: 112 WTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 171
Query: 59 HRN 61
HR+
Sbjct: 172 HRH 174
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 4 WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
W+I+ I DI + SA++ LL W +R T+ Y V V +F SW+DGLAFNA+IH
Sbjct: 108 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIH 164
Query: 60 RN 61
R+
Sbjct: 165 RH 166
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
G+ + ++ LL+W + T+ YPGV VSD +SSW DGLA A+++R
Sbjct: 1 GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYR 47
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
++ LL+W + T+ YPGV VSD +SSW DGLA A+++R
Sbjct: 15 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYR 53
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
LL W R+TT Y V V +FT+SW DGLAFNA++HR+
Sbjct: 13 LLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH 49
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
LL W R+TT Y V V +FT+SW DGLAFNA++HR+
Sbjct: 126 LLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH 162
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 12 VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
+M ++ LL W R++T YP V V +FT+SW DGLA NA+IH
Sbjct: 127 IMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIH 174
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 4 WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
W+I+ I DI + SA++ LL W +R T+ Y V + +F SW+DGL F A+IH
Sbjct: 103 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIH 159
Query: 60 RN 61
R+
Sbjct: 160 RH 161
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 4 WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
W+I+ I DI + SA++ LL W +R T+ Y V V +F +SW+DGLA A+IH
Sbjct: 123 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIH 179
Query: 60 RN 61
R+
Sbjct: 180 RH 181
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
PN S +LL W + T Y GV++++FT+SWR+GL+F AI+H
Sbjct: 8 PNAS--QSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHH 49
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 4 WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
W+I+ I DI + SA++ LL W +R T+ Y V V +F +SW+DGLA A+IH
Sbjct: 119 WTIILRFAIQDISV---EETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIH 175
Query: 60 RN 61
R+
Sbjct: 176 RH 177
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 4 WSIL----ISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
W+I+ I DI + SA++ LL W +R T+ Y V + +F SW+DGL F A+IH
Sbjct: 104 WTIILRFAIQDISV---EETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIH 160
Query: 60 RN 61
R+
Sbjct: 161 RH 162
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
V+ LL W +R T Y GV V+D T SW+ GLA AIIHR
Sbjct: 7 GVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHR 49
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
LL W ++ T Y V V+D T+SWR GLA AIIHR
Sbjct: 14 LLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHR 49
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
+ +++ LL+W R T Y V + +F+SSW G+AF A+IH+
Sbjct: 3 LGSKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHK 44
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human
Smoothelin Splice Isoform L2
Length = 128
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
G+ + + LL W R T Y V + +F+SSW DG+AF A++H
Sbjct: 1 GSSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVH 46
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
+ + LL W + +K P + +++F +W+DG A A++
Sbjct: 140 TPKQRLLGWIQ---NKIPYLPITNFNQNWQDGKALGALV 175
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 31 RTTSKYPGVRVSDFTSSWRDGLAFNAII 58
R +K P + +++F +W+DG A A++
Sbjct: 151 RIQNKIPYLPITNFNQNWQDGKALGALV 178
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
+ + LL W + +K P + +++F +W+DG A A++
Sbjct: 150 TPKQRLLGWIQ---NKIPYLPITNFNQNWQDGKALGALV 185
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
+ + LL W + +K P + +++F +W+DG A A++
Sbjct: 143 TPKQRLLGWIQ---NKIPYLPITNFNQNWQDGKALGALV 178
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAII 58
+ + LL W + +K P + +++F +W+DG A A++
Sbjct: 143 TPKQRLLGWIQ---NKIPYLPITNFNQNWQDGKALGALV 178
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 12 VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
V+GA+P+ L W + ++ ++ WRD A +
Sbjct: 163 VIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHG 207
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 12 VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNA 56
V+GA+P+ L W + ++ ++ WRD A +
Sbjct: 163 VIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHG 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,900,335
Number of Sequences: 62578
Number of extensions: 50690
Number of successful extensions: 109
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 28
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)