Query psy3342
Match_columns 61
No_of_seqs 112 out of 530
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:31:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.9 4.7E-26 1E-30 181.2 3.0 59 3-61 143-208 (2473)
2 KOG0035|consensus 99.5 5.2E-15 1.1E-19 113.6 0.4 57 3-61 123-183 (890)
3 COG5069 SAC6 Ca2+-binding acti 99.1 5.2E-12 1.1E-16 93.3 -1.9 44 18-61 123-167 (612)
4 smart00033 CH Calponin homolog 98.9 1.7E-10 3.8E-15 66.3 -0.1 39 22-60 2-40 (103)
5 cd00014 CH Calponin homology d 98.8 6.7E-10 1.5E-14 64.5 0.2 40 21-60 2-41 (107)
6 PF00307 CH: Calponin homology 98.7 8.8E-09 1.9E-13 59.7 1.8 40 22-61 1-41 (108)
7 PF11971 CAMSAP_CH: CAMSAP CH 98.5 1.8E-08 3.9E-13 59.2 -1.0 33 28-61 1-33 (85)
8 KOG0035|consensus 97.2 0.00023 4.9E-09 55.9 2.4 41 20-61 421-461 (890)
9 KOG0046|consensus 91.4 0.2 4.3E-06 38.4 2.8 41 18-59 262-304 (627)
10 PF06294 DUF1042: Domain of Un 80.1 0.27 5.9E-06 31.5 -1.4 34 25-61 1-34 (158)
11 cd08540 SAM_PNT-ERG Sterile al 78.0 1.6 3.5E-05 25.0 1.5 35 22-58 10-46 (75)
12 cd08531 SAM_PNT-ERG_FLI-1 Ster 77.3 1.9 4E-05 24.7 1.6 35 22-58 10-46 (75)
13 cd08536 SAM_PNT-Mae Sterile al 75.8 2.3 5E-05 23.7 1.7 33 23-58 8-42 (66)
14 cd08541 SAM_PNT-FLI-1 Sterile 72.0 2.7 5.9E-05 25.0 1.5 35 22-58 22-58 (91)
15 cd08542 SAM_PNT-ETS-1 Sterile 71.8 3.1 6.8E-05 24.6 1.7 34 22-58 24-59 (88)
16 cd08534 SAM_PNT-GABP-alpha Ste 68.5 3.7 8.1E-05 24.2 1.5 34 22-58 24-59 (89)
17 cd08543 SAM_PNT-ETS-2 Sterile 66.3 4.8 0.0001 23.9 1.7 34 22-58 24-59 (89)
18 KOG3631|consensus 56.1 10 0.00022 27.4 2.1 34 21-55 258-291 (365)
19 KOG2046|consensus 54.1 6.8 0.00015 26.3 1.0 35 22-59 27-63 (193)
20 cd08535 SAM_PNT-Tel_Yan Steril 50.0 13 0.00029 20.7 1.6 34 22-58 8-43 (68)
21 cd08757 SAM_PNT_ESE Sterile al 47.7 15 0.00033 20.3 1.6 34 22-58 7-44 (68)
22 KOG3170|consensus 46.6 6.3 0.00014 27.2 -0.1 14 48-61 119-132 (240)
23 cd08532 SAM_PNT-PDEF-like Ster 42.7 17 0.00037 20.7 1.4 33 22-58 15-49 (76)
24 cd08539 SAM_PNT-ESE-3-like Ste 41.7 12 0.00026 21.5 0.6 33 22-57 10-46 (74)
25 PF02751 TFIIA_gamma_C: Transc 40.6 28 0.00061 18.7 1.9 12 2-13 20-31 (52)
26 cd08203 SAM_PNT Sterile alpha 39.6 24 0.00052 19.3 1.6 33 22-57 7-41 (66)
27 smart00251 SAM_PNT SAM / Point 37.4 34 0.00074 19.5 2.1 33 22-57 22-56 (82)
28 PF14908 DUF4496: Domain of un 36.6 45 0.00097 20.2 2.6 26 21-46 4-29 (140)
29 cd08537 SAM_PNT-ESE-1-like Ste 36.2 29 0.00063 20.2 1.6 34 21-57 14-51 (78)
30 cd08538 SAM_PNT-ESE-2-like Ste 35.9 25 0.00054 20.3 1.3 35 22-59 12-50 (78)
31 KOG0091|consensus 35.5 50 0.0011 22.4 2.9 26 2-29 3-28 (213)
32 cd08533 SAM_PNT-ETS-1,2 Steril 34.7 34 0.00074 19.3 1.7 33 23-58 10-44 (71)
33 KOG0518|consensus 33.4 26 0.00056 29.1 1.4 23 37-59 160-182 (1113)
34 KOG3721|consensus 33.0 30 0.00066 24.7 1.6 36 6-41 156-193 (302)
35 PF06377 Adipokin_hormo: Adipo 32.5 21 0.00045 19.0 0.6 9 43-53 3-11 (48)
36 PF12439 GDE_N: Glycogen debra 30.6 25 0.00055 23.3 0.9 16 1-16 84-99 (223)
37 PF11039 DUF2824: Protein of u 29.5 1.6E+02 0.0035 19.1 4.5 57 2-58 57-115 (151)
38 PF14376 Haem_bd: Haem-binding 28.1 44 0.00095 20.7 1.6 17 16-32 118-136 (137)
39 COG1179 Dinucleotide-utilizing 23.0 98 0.0021 21.8 2.7 37 17-53 130-178 (263)
40 PF09752 DUF2048: Uncharacteri 20.5 86 0.0019 22.8 2.1 22 22-45 162-183 (348)
41 KOG1264|consensus 20.0 69 0.0015 26.7 1.6 40 19-58 545-592 (1267)
No 1
>KOG0517|consensus
Probab=99.92 E-value=4.7e-26 Score=181.17 Aligned_cols=59 Identities=51% Similarity=0.972 Sum_probs=55.8
Q ss_pred eeE----EEeeeeecCCCC---CCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 3 QWS----ILISDIVMGAEP---NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 3 ~~~----fqI~~i~~~~~~---~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
||| |||++|+++++. ..|||+|||.|||++|++||+|+|+|||+|||||+||+||||+|
T Consensus 143 IWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIHkH 208 (2473)
T KOG0517|consen 143 IWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIHKH 208 (2473)
T ss_pred HHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccCccchhcchhHHHHHHhc
Confidence 788 999999998764 57999999999999999999999999999999999999999987
No 2
>KOG0035|consensus
Probab=99.48 E-value=5.2e-15 Score=113.65 Aligned_cols=57 Identities=46% Similarity=0.931 Sum_probs=52.8
Q ss_pred eeE----EEeeeeecCCCCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 3 QWS----ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 3 ~~~----fqI~~i~~~~~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
||| |.|.+|+++. ..++++.||.|||+.|++|.+|.|.||+.||+||++|||+||+|
T Consensus 123 i~tlilr~~i~~is~~~--e~~a~egllLwcq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~ 183 (890)
T KOG0035|consen 123 IWTLILRFAIQDISVEC--ELSAKEGLLLWCQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRH 183 (890)
T ss_pred HHHhhccccccchhhhc--chhhhhhhhhheecccCCccccccccceecccchHHHHHHHHhc
Confidence 566 8999998875 57899999999999999999999999999999999999999986
No 3
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.10 E-value=5.2e-12 Score=93.32 Aligned_cols=44 Identities=43% Similarity=0.767 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHhhcCCCC-CeeecCCCCCcccchhhhhhhhcC
Q psy3342 18 NVSARDALLKWARRTTSKYP-GVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~~~y~-~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
..+.+..||+||++.+++|- ++.+-+|+.||+||+|||||||.+
T Consensus 123 elt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~ 167 (612)
T COG5069 123 ELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDS 167 (612)
T ss_pred hHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHHHHhhc
Confidence 47889999999999999994 599999999999999999999964
No 4
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.92 E-value=1.7e-10 Score=66.32 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
++.++.||+..++.+.+..++||..+|+||.+||+|++.
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~ 40 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNS 40 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHH
Confidence 578999999999998778899999999999999999985
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=98.83 E-value=6.7e-10 Score=64.50 Aligned_cols=40 Identities=23% Similarity=0.684 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
.++.++.||+..++.+..+.++||.++|+||++||+|++.
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~ 41 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNS 41 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHH
Confidence 5788999999999999766899999999999999999985
No 6
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.68 E-value=8.8e-09 Score=59.71 Aligned_cols=40 Identities=35% Similarity=0.708 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCCC-CCeeecCCCCCcccchhhhhhhhcC
Q psy3342 22 RDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 22 k~~LL~W~q~~~~~y-~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
++.|+.|++.....+ ++..++||..+|+||++||.||+.+
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l 41 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKL 41 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHH
Confidence 478999999999877 3578999999999999999999853
No 7
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.46 E-value=1.8e-08 Score=59.24 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=27.2
Q ss_pred HHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 28 WARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 28 W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|.+.+...+ ...|.||+.|++||+++|+|||.|
T Consensus 1 ~~~~~~~~~-~~~v~dl~~~l~DG~~Lc~Lih~Y 33 (85)
T PF11971_consen 1 WVNARCAPY-FPPVEDLTQDLSDGRALCALIHFY 33 (85)
T ss_pred CCCcccCCC-CcchhhhhhhhccHHHHHHHHHHh
Confidence 444455545 789999999999999999999987
No 8
>KOG0035|consensus
Probab=97.21 E-value=0.00023 Score=55.94 Aligned_cols=41 Identities=24% Similarity=0.126 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.....||.||++.+.+|+++.++++ .+|+.|.+||||+|.+
T Consensus 421 d~~~~lle~~ke~~~~~ea~~~~~~-~~~~~~e~~~ai~~~~ 461 (890)
T KOG0035|consen 421 DYGQALLEECKELTKKHEAFESDLS-AHQDNVEAFCAIAHEL 461 (890)
T ss_pred chHHHHHHHHHhhcccccccccchh-hhhcchhHHHHHHHHh
Confidence 4457889999999999999999999 9999999999999964
No 9
>KOG0046|consensus
Probab=91.43 E-value=0.2 Score=38.41 Aligned_cols=41 Identities=20% Similarity=0.494 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHhhc--CCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 18 NVSARDALLKWARRTT--SKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~--~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
++++.+.||+|++.+. ++| ...++||++...||.+..-|++
T Consensus 262 ~L~PEkiLLrW~N~HL~kag~-~k~~~nFs~DikD~eaY~~LLn 304 (627)
T KOG0046|consen 262 RLPPEKILLRWMNYHLKKAGW-KKTVTNFSSDIKDSEAYTHLLN 304 (627)
T ss_pred cCCHHHHHHHHHHHHHHhccc-ceehhhhhhhhccHHHHHHHHH
Confidence 5799999999999766 445 3578999999999999776654
No 10
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=80.14 E-value=0.27 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 25 LLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 25 LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|++|.+.-.- .+.+.++..++.||..+.-|+++|
T Consensus 1 l~~WL~~l~l---s~~~~n~~rDfsdG~lvAEIl~~y 34 (158)
T PF06294_consen 1 LLKWLQSLDL---SRPPKNIRRDFSDGYLVAEILSRY 34 (158)
T ss_dssp HHHHHHHS-----S--SS-HHHHHTTSHHHHHHHHHH
T ss_pred ChHHHhcCCC---CCCCCchHHHcccccHHHHHHHHH
Confidence 5789988222 246778888899999999999875
No 11
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=77.96 E-value=1.6 Score=25.01 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCc--ccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSW--RDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw--~dG~af~aLi 58 (61)
++....|++...+.| +++-.|++ .| -+|.++|+|=
T Consensus 10 ~~~V~~WL~Wa~~ef-~L~~~~~~-~F~~m~Gk~LC~Ls 46 (75)
T cd08540 10 TDHVRQWLEWAVKEY-GLPDVDVL-LFQNIDGKELCKMT 46 (75)
T ss_pred HHHHHHHHHHHHHHh-CCCCCCcc-cccCCCHHHHHhCC
Confidence 456677887777777 33333332 35 3899999873
No 12
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=77.30 E-value=1.9 Score=24.69 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
++....|++...+.| +++++.+|.. -||.++|+|=
T Consensus 10 ~~~V~~WL~Wa~~ef~L~~i~~~~F~~--m~Gk~LC~lt 46 (75)
T cd08531 10 REHVRQWLEWAVKEYGLQDVDVSRFQN--IDGKELCKMT 46 (75)
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhccC--CChHHHHcCC
Confidence 455677777766666 3455566632 5899999863
No 13
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=75.85 E-value=2.3 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 23 DALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 23 ~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
+....|++..++.| +.+.+.+|. -+|.++|+|=
T Consensus 8 ~~V~~WL~w~~~ef~L~~~~~~~F~---m~Gk~LC~ls 42 (66)
T cd08536 8 EHVRTWLRWVSARYQLEVVDLDKFL---MNGKGLCLMS 42 (66)
T ss_pred HHHHHHHHHHHHHhCCCCCCccccC---CCHHHHHcCC
Confidence 44567777666666 346678885 5999999863
No 14
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=72.05 E-value=2.7 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcCCCC--CeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKYP--GVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~--~v~i~~fs~Sw~dG~af~aLi 58 (61)
++....|++..++.|. ++.+.+|.. -+|.++|+|=
T Consensus 22 ~~hV~~WL~Wa~~ef~L~~vd~~~F~~--m~Gk~LC~Ls 58 (91)
T cd08541 22 QEHVRQWLEWAIKEYGLMEIDTSFFQN--MDGKELCKMN 58 (91)
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhccC--CCHHHHHhCC
Confidence 4667778877776662 344444421 3899999873
No 15
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=71.76 E-value=3.1 Score=24.61 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
++....|.+...+.| +++.+.+|. -+|.++|+|=
T Consensus 24 ~~~V~~WL~Wa~~ef~L~~i~~~~F~---m~Gk~LC~Ls 59 (88)
T cd08542 24 ETHVRDWVMWAVNEFSLKGVDFQKFC---MNGAALCALG 59 (88)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccCC---CCHHHHHcCC
Confidence 345566666555555 467778884 6999999874
No 16
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=68.50 E-value=3.7 Score=24.24 Aligned_cols=34 Identities=18% Similarity=0.494 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
++....|.+..++.| +++++.+|. -+|.++|+|=
T Consensus 24 ~~~V~~WL~Wa~~ef~L~~v~~~~F~---m~Gk~LC~Ls 59 (89)
T cd08534 24 EDQVLHWVVWAVKEFSLTDIDLSDWN---ITGRELCSLT 59 (89)
T ss_pred HHHHHHHHHHHHHHcCCCCCChhhcC---CCHHHHhcCC
Confidence 456677777766666 356677784 4999999873
No 17
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=66.29 E-value=4.8 Score=23.89 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
+.....|.+.....| +++.+.+|. -+|.++|+|=
T Consensus 24 ~~~V~~WL~Wa~~ef~L~~i~~~~F~---m~Gk~LC~Ls 59 (89)
T cd08543 24 EQQVCQWLLWATNEFSLVNVNFQQFG---MNGQELCNLG 59 (89)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccCC---CChHHHHcCC
Confidence 455566666555555 457788884 6899999874
No 18
>KOG3631|consensus
Probab=56.06 E-value=10 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhh
Q psy3342 21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFN 55 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~ 55 (61)
.|++|+..|+...... +++|+|+.+-|.||.-+.
T Consensus 258 VK~sli~FvNkhLnkl-nLeVt~LdtQFaDGV~Lv 291 (365)
T KOG3631|consen 258 VKKSLITFVNKHLNKL-NLEVTELDTQFADGVYLV 291 (365)
T ss_pred HHHHHHHHHHHHhhhc-cceeehhhhhhccchHHH
Confidence 4788999999988777 899999999999996543
No 19
>KOG2046|consensus
Probab=54.10 E-value=6.8 Score=26.32 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=26.7
Q ss_pred HHHHHHHHHhh--cCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 22 RDALLKWARRT--TSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 22 k~~LL~W~q~~--~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
.+-|+.|+... ++.. .-.||..-.+||..||-||.
T Consensus 27 ~~el~~WI~~~~~~~~~---~~~~f~~~LKDG~iLCkl~N 63 (193)
T KOG2046|consen 27 EKELREWIENVVLTELP---ARGDFQDLLKDGVILCKLIN 63 (193)
T ss_pred HHHHHHHHHHhhccCCC---cccCHHHHHcchHHHHHHHH
Confidence 45688999874 3221 36789999999999999985
No 20
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=50.00 E-value=13 Score=20.74 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
++....|++...+.| +++.+.+|. -||.++|+|=
T Consensus 8 ~~~V~~WL~wa~~ef~L~~i~~~~F~---mnGk~LC~ls 43 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPPIDSNTFE---MNGKALCLLT 43 (68)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhccC---CCHHHHhcCC
Confidence 345566766666556 346667774 6899999863
No 21
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=47.67 E-value=15 Score=20.31 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCCC--C--CeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKY--P--GVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~--~v~i~~fs~Sw~dG~af~aLi 58 (61)
++..+.|++..++.| + ++.+.+| =-||.++|.+=
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F---~m~Gk~LC~ms 44 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKF---NIDGQTLCSMT 44 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCcccc---CCCHHHHHcCC
Confidence 345677877666443 2 3566777 36899999863
No 22
>KOG3170|consensus
Probab=46.62 E-value=6.3 Score=27.21 Aligned_cols=14 Identities=14% Similarity=0.624 Sum_probs=12.3
Q ss_pred cccchhhhhhhhcC
Q psy3342 48 WRDGLAFNAIIHRN 61 (61)
Q Consensus 48 w~dG~af~aLih~~ 61 (61)
+++|++.|+||+++
T Consensus 119 y~~gvp~c~Ll~~~ 132 (240)
T KOG3170|consen 119 YKQGVPLCALLSHH 132 (240)
T ss_pred eccccHHHHHHHHH
Confidence 68999999999864
No 23
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=42.68 E-value=17 Score=20.73 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcCCCCCe--eecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGV--RVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v--~i~~fs~Sw~dG~af~aLi 58 (61)
++....|++...+.|. + ++.+| =-||.++|+|=
T Consensus 15 ~~~V~~WL~w~~~ef~-L~~~~~~F---~mnG~~LC~ls 49 (76)
T cd08532 15 PANVQKWLLWTEHQYR-LPPPPRCF---ELNGKDLCALS 49 (76)
T ss_pred HHHHHHHHHHHHHHhC-CCCchhcC---CCCHHHHHcCC
Confidence 4667788887777772 2 44555 46899999863
No 24
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=41.72 E-value=12 Score=21.51 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhcCCC--C--CeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--P--GVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~--~v~i~~fs~Sw~dG~af~aL 57 (61)
|...+.|++..++.+ + +++..+| ==||.++|.+
T Consensus 10 k~~V~~WL~~~~~~~~~~~~~i~~~~F---~MnG~~LC~m 46 (74)
T cd08539 10 KYQVWEWLQHLLDTNQLDASCIPFQEF---DINGEHLCSM 46 (74)
T ss_pred HHHHHHHHHHHHHHcCCCcccccHHHc---CCChHHHHcc
Confidence 567788988774433 2 2344555 4689999976
No 25
>PF02751 TFIIA_gamma_C: Transcription initiation factor IIA, gamma subunit; InterPro: IPR015871 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the beta-barrel domain found at the C-terminal of the gamma subunit of transcription factor TFIIA. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=40.56 E-value=28 Score=18.68 Aligned_cols=12 Identities=8% Similarity=0.745 Sum_probs=9.9
Q ss_pred ceeEEEeeeeec
Q psy3342 2 EQWSILISDIVM 13 (61)
Q Consensus 2 ~~~~fqI~~i~~ 13 (61)
+.|||.+.+...
T Consensus 20 nVWTFi~kn~~f 31 (52)
T PF02751_consen 20 NVWTFILKNVEF 31 (52)
T ss_dssp TEEEEEEEEEEE
T ss_pred cEEEEEEcCEEE
Confidence 579999999855
No 26
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=39.65 E-value=24 Score=19.27 Aligned_cols=33 Identities=18% Similarity=0.531 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
++..+.|++...+.| +.+.+.+| =-+|.++|.+
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~~~~~~F---~m~G~~Lc~l 41 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPPIDFSKF---NMNGKELCLL 41 (66)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhhc---CCCHHHHHhC
Confidence 345667777666555 34566777 3589999986
No 27
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=37.36 E-value=34 Score=19.53 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCCCC--CeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKYP--GVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~--~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|++..++.|. ++...+| =-+|.++|.|
T Consensus 22 ~~~V~~Wl~w~~~ef~L~~~~~~~f---~m~G~~Lc~l 56 (82)
T smart00251 22 EDHVLEWLEWAVKEFSLSPIDFSKF---DMSGKELCSM 56 (82)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccC---CCCHHHHHcC
Confidence 4566778877776673 3444555 3589999986
No 28
>PF14908 DUF4496: Domain of unknown function (DUF4496)
Probab=36.59 E-value=45 Score=20.23 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCCC
Q psy3342 21 ARDALLKWARRTTSKYPGVRVSDFTS 46 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v~i~~fs~ 46 (61)
..+++-.|++++.....+|.|.+|.+
T Consensus 4 vW~a~~~~i~~qL~~~kgV~Ip~fGt 29 (140)
T PF14908_consen 4 VWNALSEYIERQLSLGKGVSIPGFGT 29 (140)
T ss_pred HHHHHHHHHHHHHhcCCCEEeCCCcE
Confidence 46788999999999888999999965
No 29
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=36.21 E-value=29 Score=20.20 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcCC--C--CCeeecCCCCCcccchhhhhh
Q psy3342 21 ARDALLKWARRTTSK--Y--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 21 ak~~LL~W~q~~~~~--y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
.|...+.|++..++. | .+|++.+| ==||.++|.+
T Consensus 14 tk~qVleWL~~~~e~n~~dl~~v~f~~F---~MnG~~LC~l 51 (78)
T cd08537 14 TKTQVLEWISYHVEKNKYDASSIDFSRC---DMDGATLCNC 51 (78)
T ss_pred cHHHHHHHHHHHHHhccCCcccCCHHHh---CCchHHHHcc
Confidence 467789999988833 5 34566666 4589999986
No 30
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=35.90 E-value=25 Score=20.32 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCCCC--C--eeecCCCCCcccchhhhhhhh
Q psy3342 22 RDALLKWARRTTSKYP--G--VRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~--~--v~i~~fs~Sw~dG~af~aLih 59 (61)
+...+.|++..++.|. + +++.+| =-||.++|++=+
T Consensus 12 ~~~V~~WL~Wav~ef~L~~~~i~~~~f---~m~Gk~LC~ms~ 50 (78)
T cd08538 12 KRHVWEWLQFCCDQYKLDANCISFCHF---NISGLQLCSMTQ 50 (78)
T ss_pred HHHHHHHHHHHHHHcCCCccccchhhc---CCCHHHHHcCCH
Confidence 5677889988887773 1 355666 358999998743
No 31
>KOG0091|consensus
Probab=35.49 E-value=50 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=19.9
Q ss_pred ceeEEEeeeeecCCCCCCCHHHHHHHHH
Q psy3342 2 EQWSILISDIVMGAEPNVSARDALLKWA 29 (61)
Q Consensus 2 ~~~~fqI~~i~~~~~~~~sak~~LL~W~ 29 (61)
+||.||..-|.++. ....|..||...
T Consensus 3 pif~yqfrlivigd--stvgkssll~~f 28 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGD--STVGKSSLLRYF 28 (213)
T ss_pred cceEEEEEEEEEcC--CcccHHHHHHHH
Confidence 69999999998874 445678888653
No 32
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=34.71 E-value=34 Score=19.27 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhhh
Q psy3342 23 DALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 23 ~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
+....|.+..++.| +++.+.+|. -+|.++|+|=
T Consensus 10 ~~V~~WL~Wa~~ef~L~~v~~~~F~---m~Gk~LC~ls 44 (71)
T cd08533 10 THVRQWLLWAVNEFSLEGVNFQKFC---MSGRDLCALG 44 (71)
T ss_pred HHHHHHHHHHHHHcCCCCCCcccCC---CCHHHHHcCC
Confidence 44556666555554 357778884 5899999873
No 33
>KOG0518|consensus
Probab=33.40 E-value=26 Score=29.14 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCeeecCCCCCcccchhhhhhhh
Q psy3342 37 PGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 37 ~~v~i~~fs~Sw~dG~af~aLih 59 (61)
|.+...+|++.|.+|+|+.+++-
T Consensus 160 P~~~~v~~~td~n~~~Alg~~le 182 (1113)
T KOG0518|consen 160 PFVVKVNEGTDWNDVQALGPGLE 182 (1113)
T ss_pred CceeccccccCcccceEeccchh
Confidence 67889999999999999988763
No 34
>KOG3721|consensus
Probab=33.05 E-value=30 Score=24.74 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=25.6
Q ss_pred EEeeeee--cCCCCCCCHHHHHHHHHHhhcCCCCCeee
Q psy3342 6 ILISDIV--MGAEPNVSARDALLKWARRTTSKYPGVRV 41 (61)
Q Consensus 6 fqI~~i~--~~~~~~~sak~~LL~W~q~~~~~y~~v~i 41 (61)
|-.+++. ++..-+......|-.||++.|+.|.+|-|
T Consensus 156 FYLSNm~PQvg~gfNr~~Wn~lE~~cR~lt~~y~sV~V 193 (302)
T KOG3721|consen 156 FYLSNMVPQVGDGFNRDYWNRLEMYCRRLTKKYDSVYV 193 (302)
T ss_pred hhhhccCcccccccchhHHHHHHHHHHHHHhhhCeEEE
Confidence 5556653 23223456788999999999999988764
No 35
>PF06377 Adipokin_hormo: Adipokinetic hormone; InterPro: IPR010475 This family consists of several insect adipokinetic hormone as well as the related crustacean red pigment concentrating hormone (RPCH) []. Flight activity of insects comprises one of the most intense biochemical processes known in nature, and therefore provides an attractive model system to study the hormonal regulation of metabolism during physical exercise. In long-distance flying insects, such as the migratory locust, both carbohydrate and lipid reserves are utilised as fuels for sustained flight activity. The mobilisation of these energy stores in Locusta migratoria (Migratory locust) is mediated by three structurally related adipokinetic hormones (AKHs), which are all capable of stimulating the release of both carbohydrates and lipids from the fat body [].; GO: 0005179 hormone activity
Probab=32.54 E-value=21 Score=19.01 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=6.9
Q ss_pred CCCCCcccchh
Q psy3342 43 DFTSSWRDGLA 53 (61)
Q Consensus 43 ~fs~Sw~dG~a 53 (61)
|||.+| |..
T Consensus 3 nFSp~W--GKR 11 (48)
T PF06377_consen 3 NFSPGW--GKR 11 (48)
T ss_pred ccCCCc--ccc
Confidence 799999 643
No 36
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=30.62 E-value=25 Score=23.33 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=13.1
Q ss_pred CceeEEEeeeeecCCC
Q psy3342 1 MEQWSILISDIVMGAE 16 (61)
Q Consensus 1 ~~~~~fqI~~i~~~~~ 16 (61)
++.|+|++.++.+++.
T Consensus 84 ~P~w~y~~~~~~l~k~ 99 (223)
T PF12439_consen 84 LPVWRYRVGDVVLEKR 99 (223)
T ss_pred CeEEEEEECCEEEEEE
Confidence 5789999999877765
No 37
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=29.50 E-value=1.6e+02 Score=19.05 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=31.7
Q ss_pred ceeEEEeeeeec-CCCCCCCHHHHHHHHHHhhcCCCCCeeecCC-CCCcccchhhhhhh
Q psy3342 2 EQWSILISDIVM-GAEPNVSARDALLKWARRTTSKYPGVRVSDF-TSSWRDGLAFNAII 58 (61)
Q Consensus 2 ~~~~fqI~~i~~-~~~~~~sak~~LL~W~q~~~~~y~~v~i~~f-s~Sw~dG~af~aLi 58 (61)
|||.+-++.=.+ +++.++=+++.=+..|+.-..+-+-..+..| ..-.+-|++.|.|+
T Consensus 57 ~i~~~~vecHa~y~P~fRG~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ll 115 (151)
T PF11039_consen 57 EIQPSVVECHAMYDPGFRGYALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLL 115 (151)
T ss_pred EEeeeeEEEEeeeccccchhHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhh
Confidence 344444443322 3444455566555667766655544333333 33378899999987
No 38
>PF14376 Haem_bd: Haem-binding domain
Probab=28.08 E-value=44 Score=20.67 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=11.2
Q ss_pred CCCCCH--HHHHHHHHHhh
Q psy3342 16 EPNVSA--RDALLKWARRT 32 (61)
Q Consensus 16 ~~~~sa--k~~LL~W~q~~ 32 (61)
+.++|. |+.|+.|++.+
T Consensus 118 ~a~Ls~~ek~~Ll~Wi~~~ 136 (137)
T PF14376_consen 118 EAKLSEEEKQALLNWIKEQ 136 (137)
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 334444 67899998754
No 39
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=23.04 E-value=98 Score=21.83 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHhhc-----------CCCC-CeeecCCCCCcccchh
Q psy3342 17 PNVSARDALLKWARRTT-----------SKYP-GVRVSDFTSSWRDGLA 53 (61)
Q Consensus 17 ~~~sak~~LL~W~q~~~-----------~~y~-~v~i~~fs~Sw~dG~a 53 (61)
+...+|-+|+.||++.- +..| .++|.|.++.-.|.+|
T Consensus 130 D~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~v~DiskT~~DPLa 178 (263)
T COG1179 130 DSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQVADISKTIQDPLA 178 (263)
T ss_pred hhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceEEeeechhhccCcHH
Confidence 35678999999998732 1122 3678898888777765
No 40
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=20.52 E-value=86 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCC
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFT 45 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs 45 (61)
-.+||.||+++ +|..+-++.+|
T Consensus 162 ~~~Ll~Wl~~~--G~~~~g~~G~S 183 (348)
T PF09752_consen 162 SRALLHWLERE--GYGPLGLTGIS 183 (348)
T ss_pred HHHHHHHHHhc--CCCceEEEEec
Confidence 36899999887 77667666664
No 41
>KOG1264|consensus
Probab=20.04 E-value=69 Score=26.68 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhhcCCCC-------CeeecCCCCC-cccchhhhhhh
Q psy3342 19 VSARDALLKWARRTTSKYP-------GVRVSDFTSS-WRDGLAFNAII 58 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~~y~-------~v~i~~fs~S-w~dG~af~aLi 58 (61)
..|++.|+..|.+.-+..- +.=|.||+-| |++|++-+.=|
T Consensus 545 ~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRI 592 (1267)
T KOG1264|consen 545 TEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRI 592 (1267)
T ss_pred hHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEE
Confidence 4678889999976653331 1237888888 99998855444
Done!