Query psy3342
Match_columns 61
No_of_seqs 112 out of 530
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bkr_A Spectrin beta chain; fi 99.8 9.5E-22 3.2E-26 118.4 2.1 43 19-61 2-44 (109)
2 1wyq_A Spectrin beta chain, br 99.8 1.7E-21 5.9E-26 120.0 2.0 46 16-61 3-48 (127)
3 1bhd_A Utrophin; calponin homo 99.8 2.2E-21 7.5E-26 118.2 2.0 45 17-61 5-49 (118)
4 1wyl_A NEDD9 interacting prote 99.8 2.3E-21 7.8E-26 117.8 1.8 45 17-61 4-48 (116)
5 2d87_A Smoothelin splice isofo 99.8 1.9E-20 6.5E-25 115.6 4.0 44 18-61 5-48 (128)
6 2d89_A EHBP1 protein; all alph 99.8 1.1E-20 3.9E-25 115.1 1.7 45 17-61 6-50 (119)
7 2d88_A Protein mical-3; all al 99.8 7.2E-21 2.5E-25 116.3 0.2 46 16-61 5-50 (121)
8 3f7p_A Plectin-1; plakin, hemi 99.7 6.4E-19 2.2E-23 120.8 0.5 56 6-61 174-230 (296)
9 1wku_A Alpha-actinin 3; calpon 99.7 4.8E-19 1.6E-23 118.3 -1.1 53 6-61 129-181 (254)
10 1sh5_A Plectin 1, PLTN, PCN; a 99.7 1.9E-18 6.3E-23 114.3 1.4 56 6-61 118-174 (245)
11 1sjj_A Actinin; 3-helix bundle 99.6 5.4E-17 1.8E-21 119.4 -0.5 53 6-61 110-162 (863)
12 3hoc_A Filamin-A; calponin hom 99.6 7.2E-17 2.5E-21 109.4 -0.4 53 6-61 151-208 (272)
13 4b7l_A Filamin-B; structural p 99.6 1.5E-16 5E-21 110.3 -0.2 53 6-61 121-178 (347)
14 2wa7_A Filamin-B; disease muta 99.6 2.3E-16 7.9E-21 104.6 0.1 53 6-61 124-181 (245)
15 1dxx_A Dystrophin; structural 99.6 9.6E-16 3.3E-20 101.5 2.7 56 6-61 118-176 (246)
16 1aoa_A T-fimbrin; actin-bindin 99.4 1.7E-13 5.7E-18 91.8 1.8 41 19-61 167-209 (275)
17 1rt8_A Fimbrin; filamentous ac 99.3 2.5E-13 8.6E-18 97.4 2.7 43 18-61 407-451 (513)
18 1rt8_A Fimbrin; filamentous ac 99.3 9.9E-14 3.4E-18 99.5 0.1 43 18-61 159-203 (513)
19 1pxy_A Fimbrin-like protein; c 99.3 4.3E-13 1.5E-17 95.9 1.4 42 20-61 397-440 (506)
20 1pxy_A Fimbrin-like protein; c 99.1 1.2E-11 4E-16 88.5 2.4 43 18-61 150-194 (506)
21 1wjo_A T-plastin; CH domain, a 99.0 1.2E-10 3.9E-15 71.8 1.8 41 20-60 7-49 (124)
22 2vzc_A Alpha-parvin; membrane, 96.5 0.0014 4.7E-08 39.8 2.4 37 22-59 24-60 (131)
23 3hoc_A Filamin-A; calponin hom 94.8 0.015 5.1E-07 39.0 2.4 37 22-59 49-85 (272)
24 1wku_A Alpha-actinin 3; calpon 94.6 0.018 6.2E-07 37.9 2.4 38 21-59 28-65 (254)
25 4b7l_A Filamin-B; structural p 94.5 0.02 6.7E-07 39.4 2.4 37 22-59 19-55 (347)
26 2wa7_A Filamin-B; disease muta 94.5 0.021 7.2E-07 37.3 2.4 39 20-59 20-58 (245)
27 2yrn_A Neuron navigator 2 isof 94.2 0.0054 1.9E-07 36.7 -0.8 39 21-59 19-58 (129)
28 1sh5_A Plectin 1, PLTN, PCN; a 94.2 0.038 1.3E-06 35.8 3.2 39 21-59 13-55 (245)
29 3f7p_A Plectin-1; plakin, hemi 93.8 0.033 1.1E-06 37.8 2.4 37 22-59 75-111 (296)
30 1dxx_A Dystrophin; structural 92.1 0.073 2.5E-06 34.6 2.1 40 20-59 16-55 (246)
31 1aoa_A T-fimbrin; actin-bindin 90.5 0.05 1.7E-06 35.9 0.0 39 21-59 25-71 (275)
32 1sjj_A Actinin; 3-helix bundle 88.7 0.13 4.5E-06 37.9 1.1 38 21-59 9-46 (863)
33 2ee7_A Sperm flagellar protein 82.8 0.16 5.6E-06 30.8 -0.8 36 23-61 18-53 (127)
34 1wyp_A Calponin 1; CH domain, 81.0 0.82 2.8E-05 27.5 1.9 36 22-60 19-54 (136)
35 2qjz_A Microtubule-associated 76.0 2 6.8E-05 25.8 2.5 34 21-60 6-40 (123)
36 1ujo_A Transgelin; CH domain, 75.5 0.66 2.3E-05 28.2 0.3 40 21-60 10-52 (144)
37 1wyo_A Protein EB3, microtubul 71.2 3.3 0.00011 25.9 2.8 34 21-60 23-57 (159)
38 1h67_A Calponin alpha; cytoske 69.9 0.82 2.8E-05 26.3 -0.2 36 22-60 5-40 (108)
39 1wyn_A Calponin-2; CH domain, 69.5 1 3.5E-05 27.4 0.1 38 20-60 17-54 (146)
40 1p2x_A RNG2 protein, RAS GTPas 64.2 1.7 5.7E-05 26.8 0.3 37 22-60 13-50 (159)
41 1p5s_A RAS GTPase-activating-l 63.1 1.5 5.2E-05 28.1 0.0 37 22-60 57-94 (203)
42 2e8p_A ELF3 protein; cell-free 62.8 4.9 0.00017 23.0 2.2 34 22-58 29-66 (92)
43 1wym_A Transgelin-2; CH domain 60.0 1.2 4.1E-05 27.3 -0.9 37 22-60 19-60 (155)
44 1sv0_C Modulator of the activi 57.5 1.8 6.1E-05 24.0 -0.4 33 22-57 16-52 (82)
45 4abo_I MAL3, microtubule integ 54.3 8 0.00027 24.0 2.2 33 21-59 7-40 (145)
46 2qjx_A Protein BIM1; calponin 52.0 11 0.00039 22.6 2.6 33 21-59 11-44 (127)
47 2l3g_A RHO guanine nucleotide 48.0 3.2 0.00011 24.7 -0.3 41 19-59 11-56 (126)
48 3i6x_A P195, RAS GTPase-activa 46.9 4 0.00014 25.9 -0.0 36 23-60 50-86 (193)
49 2rr8_A Iqgap1 protein; F-actin 45.7 2.8 9.6E-05 26.5 -0.9 36 23-60 28-64 (190)
50 1ji7_A ETS-related protein TEL 43.4 11 0.00037 21.2 1.5 33 22-57 17-51 (89)
51 1wyr_A RHO guanine nucleotide 41.5 8.2 0.00028 22.6 0.8 42 19-60 5-51 (121)
52 2r8u_A Microtubule-associated 40.7 17 0.00059 24.4 2.3 34 21-59 16-49 (268)
53 2qb0_B Telsam domain - lysozym 40.3 10 0.00035 24.5 1.2 33 22-57 17-51 (241)
54 1ekz_A DSRBDIII, maternal effe 39.9 41 0.0014 17.5 3.8 22 18-40 6-27 (76)
55 3v5w_G G gamma-I, guanine nucl 39.5 7.4 0.00025 21.8 0.3 38 21-58 39-77 (77)
56 2dkx_A SAM pointed domain-cont 38.9 2.7 9.2E-05 24.1 -1.6 31 24-57 31-63 (96)
57 1sxd_A GA repeat binding prote 33.5 14 0.00048 20.8 0.9 33 22-57 28-62 (91)
58 1sxe_A Transcriptional regulat 33.3 8 0.00027 22.1 -0.2 34 22-57 32-67 (97)
59 3adg_A F21M12.9 protein; HYL1, 32.2 54 0.0019 16.9 3.1 20 19-38 3-22 (73)
60 1sv0_A ETS DNA-binding protein 31.8 13 0.00043 20.8 0.5 33 22-57 15-49 (85)
61 1wix_A HOOK homolog 1, RSGI RU 31.3 11 0.00039 23.1 0.2 37 19-59 8-44 (164)
62 1x66_A Friend leukemia integra 31.1 7.7 0.00026 22.2 -0.5 33 23-57 30-64 (98)
63 2ytu_A Friend leukemia integra 29.2 11 0.00037 22.7 -0.1 34 22-57 43-78 (128)
64 2jv3_A ETS1 proto-oncogene; ET 26.4 25 0.00084 20.5 1.1 33 22-57 46-80 (110)
65 3llh_A RISC-loading complex su 25.2 49 0.0017 18.0 2.2 17 17-33 12-28 (90)
66 2qar_B Telsam domain; polymer, 24.1 21 0.00071 20.1 0.5 33 22-57 17-51 (93)
67 2xf7_A GP23.1; viral protein; 23.1 3.5 0.00012 21.3 -2.7 15 44-58 10-24 (51)
68 3adj_A F21M12.9 protein; HYL1, 21.7 83 0.0028 16.3 2.6 19 20-38 5-23 (76)
69 1whq_A RNA helicase A; double- 21.5 67 0.0023 17.9 2.3 20 19-39 6-25 (99)
70 1di2_A XLRBPA, double stranded 20.4 98 0.0033 15.6 2.9 18 21-38 2-19 (69)
No 1
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=99.83 E-value=9.5e-22 Score=118.37 Aligned_cols=43 Identities=56% Similarity=1.075 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.|+|++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus 2 ~s~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~ 44 (109)
T 1bkr_A 2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKH 44 (109)
T ss_dssp CHHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999974
No 2
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-21 Score=120.03 Aligned_cols=46 Identities=54% Similarity=1.006 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 16 EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 16 ~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
....++|++||+|||.++++|++++|+||++||+||+|||||||+|
T Consensus 3 ~~~~s~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~ 48 (127)
T 1wyq_A 3 SGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKH 48 (127)
T ss_dssp CSCCCSTHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999975
No 3
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=99.82 E-value=2.2e-21 Score=118.22 Aligned_cols=45 Identities=49% Similarity=0.930 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.+.+++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus 5 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~ 49 (118)
T 1bhd_A 5 QQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRH 49 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999975
No 4
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=99.82 E-value=2.3e-21 Score=117.76 Aligned_cols=45 Identities=44% Similarity=0.865 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
..++++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus 4 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~ 48 (116)
T 1wyl_A 4 GSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRL 48 (116)
T ss_dssp SCSSSHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999974
No 5
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=99.80 E-value=1.9e-20 Score=115.57 Aligned_cols=44 Identities=39% Similarity=0.800 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
..++|++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus 5 ~~~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~ 48 (128)
T 2d87_A 5 SSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNF 48 (128)
T ss_dssp SCCHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999974
No 6
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-20 Score=115.07 Aligned_cols=45 Identities=42% Similarity=0.902 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 17 PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 17 ~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.+.+++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus 6 ~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~ 50 (119)
T 2d89_A 6 SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHF 50 (119)
T ss_dssp SCCCCHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999974
No 7
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=99.79 E-value=7.2e-21 Score=116.35 Aligned_cols=46 Identities=48% Similarity=0.855 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 16 EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 16 ~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.+.++++++||+|||+++++|++++|+||++||+||+|||||||+|
T Consensus 5 ~~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~ 50 (121)
T 2d88_A 5 SSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRY 50 (121)
T ss_dssp CCSCSSSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHh
Confidence 3568899999999999999999999999999999999999999974
No 8
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=99.71 E-value=6.4e-19 Score=120.76 Aligned_cols=56 Identities=48% Similarity=0.897 Sum_probs=50.8
Q ss_pred EEeeeeecCC-CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGA-EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~-~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|||++|.+++ ...++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus 174 ~~i~~i~~~g~~~~~s~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~ 230 (296)
T 3f7p_A 174 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRH 230 (296)
T ss_dssp HTTTTCCCSSCCTTSCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHH
T ss_pred cceeeeeccCCcccCCHHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHH
Confidence 8999987754 2468999999999999999999999999999999999999999974
No 9
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=99.70 E-value=4.8e-19 Score=118.26 Aligned_cols=53 Identities=45% Similarity=0.861 Sum_probs=48.9
Q ss_pred EEeeeeecCCCCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|+|++++++ .++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus 129 ~~i~~i~~~---~~~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~ 181 (254)
T 1wku_A 129 FAIQDISVE---ETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRH 181 (254)
T ss_dssp HHTTTCEET---TEEHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred Hhhcccccc---cccHHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHH
Confidence 888888764 57899999999999999999999999999999999999999974
No 10
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=99.70 E-value=1.9e-18 Score=114.25 Aligned_cols=56 Identities=46% Similarity=0.893 Sum_probs=50.5
Q ss_pred EEeeeeecCC-CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGA-EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~-~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|+|+++.+++ ...++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus 118 ~~i~~i~~~g~~~~~~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~ 174 (245)
T 1sh5_A 118 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRH 174 (245)
T ss_dssp HTTTTCCCTTCCSSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTT
T ss_pred hcccccccccccccCCHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHH
Confidence 8888887654 2457999999999999999999999999999999999999999986
No 11
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.60 E-value=5.4e-17 Score=119.39 Aligned_cols=53 Identities=43% Similarity=0.842 Sum_probs=49.2
Q ss_pred EEeeeeecCCCCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|+|++++++ .++++++||.|||.++++|++++|+||++||+||+|||||||+|
T Consensus 110 ~~~~~~~~~---~~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~ 162 (863)
T 1sjj_A 110 FAIQDISVE---ETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRH 162 (863)
T ss_dssp CCCCCCCCC---CCCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTT
T ss_pred Hhhcccchh---ccchHHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHh
Confidence 899988764 57889999999999999999999999999999999999999986
No 12
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=99.59 E-value=7.2e-17 Score=109.38 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=42.0
Q ss_pred EEeeeeecCCC-----CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGAE-----PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~~-----~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|||+.+..+.+ .+.+++++||+|||.+ |++++|+||++||+||+|||||||+|
T Consensus 151 ~~i~~l~~~~e~~~~~~~~s~k~~LL~W~n~~---~~~~~I~nFs~sw~DG~af~aLi~~~ 208 (272)
T 3hoc_A 151 YSISMPMWDEEEDEEAKKQTPKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSC 208 (272)
T ss_dssp HHTTCC------------CCHHHHHHHHHHHH---CTTSCCCCSSGGGTTSHHHHHHHHHH
T ss_pred HhhhhhhccccccccccccCHHHHHHHHHHhh---CCCCCCCChhhcccchHHHHHHHHHh
Confidence 88887755432 3578999999999997 46899999999999999999999974
No 13
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=99.57 E-value=1.5e-16 Score=110.32 Aligned_cols=53 Identities=26% Similarity=0.530 Sum_probs=43.9
Q ss_pred EEeeeeecCCC-----CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGAE-----PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~~-----~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|||+.+..+.+ ...+++++||+|||.++ ++++|+||++||+||+|||||||+|
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~---~~~~v~nF~~sw~DG~af~aLi~~~ 178 (347)
T 4b7l_A 121 YSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PYLPITNFNQNWQDGKALGALVDSC 178 (347)
T ss_dssp HHTTSSCCC-------CCCCHHHHHHHHHHHHC---TTSCCCCSSGGGTTSHHHHHHHHHH
T ss_pred HhhhhhhcccccchhhhhhhHHHHHHHHHHhhC---CCcccCCCCCCccchHHHHHHHHHh
Confidence 88877644332 35789999999999986 5678999999999999999999974
No 14
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=99.57 E-value=2.3e-16 Score=104.58 Aligned_cols=53 Identities=26% Similarity=0.530 Sum_probs=44.2
Q ss_pred EEeeeeecCCC-----CCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGAE-----PNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~~-----~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|||+.+..+.+ .+.+++++||+|||.+. ++++|+||++||+||+|||||||+|
T Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~---~~~~v~nFs~s~~dG~a~~aLi~~~ 181 (245)
T 2wa7_A 124 YSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PYLPITNFNQNWQDGKALGALVDSC 181 (245)
T ss_dssp HHTTSSCCSSCC----CCCCHHHHHHHHHHHHS---TTSCCCCSSGGGTTSHHHHHHHHHH
T ss_pred HcccccccccccccccccccHHHHHHHHHHHhC---CCCCCCCCcccchhhHHHHHHHHHH
Confidence 77776644432 35799999999999986 5688999999999999999999974
No 15
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=99.56 E-value=9.6e-16 Score=101.51 Aligned_cols=56 Identities=38% Similarity=0.754 Sum_probs=46.5
Q ss_pred EEeeeeecCC---CCCCCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 6 ILISDIVMGA---EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 6 fqI~~i~~~~---~~~~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
|||+++..+. ....+++++||+|||.++++|++++|+||++||+||+|||||||+|
T Consensus 118 ~~i~~~~~e~~~~~~~~~~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~ 176 (246)
T 1dxx_A 118 WQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSH 176 (246)
T ss_dssp HTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhcccccHHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHH
Confidence 6666653321 1245789999999999999999999999999999999999999974
No 16
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.35 E-value=1.7e-13 Score=91.83 Aligned_cols=41 Identities=20% Similarity=0.490 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHhhcC--CCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 19 VSARDALLKWARRTTS--KYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~--~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.+++++||+|||++++ +|+. |+||++||+||+|||||||+|
T Consensus 167 ~s~~~~LL~W~n~~l~~~g~~~--I~nF~~s~~DG~a~~aLi~~~ 209 (275)
T 1aoa_A 167 LSPEELLLRWANFHLENSGWQK--INNFSADIKDSKAYFHLLNQI 209 (275)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCC--CSCSSTTTTTSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCc--chhhhhhhhhhHHHHHHHHHH
Confidence 5899999999999764 4543 999999999999999999974
No 17
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.35 E-value=2.5e-13 Score=97.38 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHhhcC-CCCCeeecCCC-CCcccchhhhhhhhcC
Q psy3342 18 NVSARDALLKWARRTTS-KYPGVRVSDFT-SSWRDGLAFNAIIHRN 61 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~~-~y~~v~i~~fs-~Sw~dG~af~aLih~~ 61 (61)
..++++ ||.|||++++ .|++++|+||+ +||+||+|||||||+|
T Consensus 407 ~~~~~~-LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~ 451 (513)
T 1rt8_A 407 TLSDSD-MVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGI 451 (513)
T ss_dssp CCCHHH-HHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHH
T ss_pred cCCHHH-HHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHHHHh
Confidence 467765 9999999987 58899999999 8999999999999974
No 18
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.34 E-value=9.9e-14 Score=99.47 Aligned_cols=43 Identities=21% Similarity=0.521 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHhhc--CCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 18 NVSARDALLKWARRTT--SKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~--~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
+.++++.||+|||.++ ++|+ ++|+||++||+||+|||||||+|
T Consensus 159 ~~~~~~~LL~W~n~~l~~~g~~-~~V~nFs~s~~DG~a~~aLl~~~ 203 (513)
T 1rt8_A 159 RLPPEKILLRWFNYHLKAANWP-RTVSNFSKDVSDGENYTVLLNQL 203 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCS-CCCSCSSGGGTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCC-cCcccchhhhhccHHHHHHHHHH
Confidence 3688999999999876 4675 89999999999999999999964
No 19
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.30 E-value=4.3e-13 Score=95.91 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHhhcCC-CCCeeecCCC-CCcccchhhhhhhhcC
Q psy3342 20 SARDALLKWARRTTSK-YPGVRVSDFT-SSWRDGLAFNAIIHRN 61 (61)
Q Consensus 20 sak~~LL~W~q~~~~~-y~~v~i~~fs-~Sw~dG~af~aLih~~ 61 (61)
.++++||.|||+++++ +++++|+||+ +||+||+|||||||+|
T Consensus 397 ~~~~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~ 440 (506)
T 1pxy_A 397 MTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAV 440 (506)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhh
Confidence 4578999999999976 4589999999 8999999999999975
No 20
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.14 E-value=1.2e-11 Score=88.52 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHhhc--CCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 18 NVSARDALLKWARRTT--SKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~--~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
..++++.||+|||.++ ++|+ ++|+||++||+||++||+|||+|
T Consensus 150 ~~~~~~~LL~W~n~~l~~~g~~-~~v~nFs~s~~DG~a~~~Ll~~~ 194 (506)
T 1pxy_A 150 RLPPEKVLLKWMNFHLKKGGYK-KTVSNFSADLKDAQAYAFLLNVL 194 (506)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCC-SCCCCSSTTTTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCC-ccCccccccccchHHHHHHHHHh
Confidence 3689999999999865 4674 89999999999999999999964
No 21
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.99 E-value=1.2e-10 Score=71.81 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHhhcCC-CCCeeecCCC-CCcccchhhhhhhhc
Q psy3342 20 SARDALLKWARRTTSK-YPGVRVSDFT-SSWRDGLAFNAIIHR 60 (61)
Q Consensus 20 sak~~LL~W~q~~~~~-y~~v~i~~fs-~Sw~dG~af~aLih~ 60 (61)
-.++.||+|||.+++. +.+++|+||+ +||+||++||+|||.
T Consensus 7 i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~ 49 (124)
T 1wjo_A 7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDA 49 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHH
Confidence 3468899999999875 4457899999 999999999999995
No 22
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=96.52 E-value=0.0014 Score=39.84 Aligned_cols=37 Identities=14% Similarity=0.452 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
+++...|++...+.+ ++.|+|+.++.+||+.+|.|+-
T Consensus 24 ~ktft~WiN~~L~~~-~~~v~dL~~Dl~DGv~L~~Lle 60 (131)
T 2vzc_A 24 KKTLITFVNKHLNKL-NLEVTELETQFADGVYLVLLMG 60 (131)
T ss_dssp HHHHHHHHHHHHGGG-TCCCCCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCcccCHHHHcccHHHHHHHHH
Confidence 677899999987766 5689999999999999999873
No 23
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=94.83 E-value=0.015 Score=39.03 Aligned_cols=37 Identities=16% Similarity=0.478 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
|+++..|++...++. +..|+|+-.+.+||+.+|.|+-
T Consensus 49 kktft~WiN~~L~~~-~~~V~dL~~DL~DGv~L~~Lle 85 (272)
T 3hoc_A 49 QNTFTRWCNEHLKCV-SKRIANLQTDLSDGLRLIALLE 85 (272)
T ss_dssp HHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCCcccHHHHHhhHHHHHHHHH
Confidence 568999999987655 4679999999999999999874
No 24
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=94.64 E-value=0.018 Score=37.89 Aligned_cols=38 Identities=18% Similarity=0.531 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
-++++..|++...++. +..++||-...+||+.+|.|+-
T Consensus 28 q~~~f~~WiN~~L~~~-~~~v~~l~~dl~DGv~L~~Lle 65 (254)
T 1wku_A 28 QRKTFTAWCNSHLRKA-GTQIENIEEDFRNGLKLMLLLE 65 (254)
T ss_dssp HHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcccc-CCCccCHHHHccCHHHHHHHHH
Confidence 3678999999987665 4578999999999999999874
No 25
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=94.50 E-value=0.02 Score=39.41 Aligned_cols=37 Identities=16% Similarity=0.497 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
+++..+|++...++. +..|+|+-.+.+||+.+|.|+-
T Consensus 19 ~ktFt~WiN~~L~~~-~~~V~dL~~Dl~DG~~L~~Lle 55 (347)
T 4b7l_A 19 QNTFTRWCNEHLKSV-NKRIGNLQTDLSDGLRLIALLE 55 (347)
T ss_dssp HHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CCCcCCHHHHhcCHHHHHHHHH
Confidence 577889999987655 4679999999999999999874
No 26
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=94.48 E-value=0.021 Score=37.28 Aligned_cols=39 Identities=15% Similarity=0.430 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
.-++++..|++...++. +..|+|+-...+||+.+|.|+-
T Consensus 20 ~q~~~f~~WiN~~L~~~-~~~v~dl~~dL~DGv~L~~Lle 58 (245)
T 2wa7_A 20 IQQNTFTRWCNEHLKCV-NKRIGNLQTDLSDGLRLIALLE 58 (245)
T ss_dssp HHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-CCCccCHHHHcccHHHHHHHHH
Confidence 34678999999987655 4678999999999999999874
No 27
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.23 E-value=0.0054 Score=36.68 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCC-CCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y-~~v~i~~fs~Sw~dG~af~aLih 59 (61)
-++++..|++...+.. ....|+||....+||..+|.|+-
T Consensus 19 q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle 58 (129)
T 2yrn_A 19 QKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHH
Confidence 3578999999877543 11258999999999999999874
No 28
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=94.19 E-value=0.038 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCC----CCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTTSKY----PGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y----~~v~i~~fs~Sw~dG~af~aLih 59 (61)
-++++..|++...+.. .+..++|+-...+||+.+|.|+-
T Consensus 13 q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle 55 (245)
T 1sh5_A 13 QKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLE 55 (245)
T ss_dssp HHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHH
Confidence 4678899999988763 24579999999999999999874
No 29
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=93.81 E-value=0.033 Score=37.82 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
++++..|++...+.. +..|+|+-.+.+||+.+|.|+-
T Consensus 75 kktft~WINs~L~~~-~~~V~dL~~DL~DGvvL~~Lle 111 (296)
T 3f7p_A 75 KKTFTKWVNKHLIKA-QRHISDLYEDLRDGHNLISLLE 111 (296)
T ss_dssp HHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHcccC-CCCcccHHHHHhhHHHHHHHHH
Confidence 578899999887544 3579999999999999999873
No 30
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=92.08 E-value=0.073 Score=34.63 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
.-++++..|++...+....-.++|+-.+.+||+.+|.|+-
T Consensus 16 ~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle 55 (246)
T 1dxx_A 16 VQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLE 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHH
Confidence 4577899999987754311268999999999999999874
No 31
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=90.55 E-value=0.05 Score=35.92 Aligned_cols=39 Identities=18% Similarity=0.454 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCCC------Ce--eecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTTSKYP------GV--RVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~------~v--~i~~fs~Sw~dG~af~aLih 59 (61)
.++++..|++..++..+ .+ .|+||-...+||+.+|.|+-
T Consensus 25 q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle 71 (275)
T 1aoa_A 25 EKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMIN 71 (275)
T ss_dssp HHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHH
Confidence 36899999999887643 22 47899999999999999874
No 32
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=88.71 E-value=0.13 Score=37.88 Aligned_cols=38 Identities=21% Similarity=0.552 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
-++++..|++...++. +..|+|+-...+||+.+|.|+-
T Consensus 9 q~~~f~~Win~~L~~~-~~~v~~l~~dl~DG~~L~~l~e 46 (863)
T 1sjj_A 9 QRKTFTAWCNSHLRKA-GTQIENIEEDFRDGLKLMLLLE 46 (863)
T ss_dssp HHHHHHHHHHHHHHHH-CSCCCCCSSTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCCccCHHHHhcCHHHHHHHHH
Confidence 4678999999886554 3578999999999999999874
No 33
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.82 E-value=0.16 Score=30.80 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhcC
Q psy3342 23 DALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61 (61)
Q Consensus 23 ~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~~ 61 (61)
.-|+.|++.-.=++ +++|+...+.||..+..|+++|
T Consensus 18 ~el~~WL~~l~Ls~---~~rn~rRDFSdG~lvAEIl~~y 53 (127)
T 2ee7_A 18 HQLYLWVDNIPLSR---PKRNLSRDFSDGVLVAEVIKFY 53 (127)
T ss_dssp HHHHHHHHHSCCSC---CSSCHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC---CCCchhhhccchhHHHHHHHHH
Confidence 56889999543333 5788888899999999998875
No 34
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=81.01 E-value=0.82 Score=27.50 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
++.+..|....++.-. ..||-.+-+||..+|-|+.+
T Consensus 19 ~~e~~~WIe~~l~~~~---~~~l~~~L~DGvvLCkL~N~ 54 (136)
T 1wyp_A 19 EQELREWIEGVTGRRI---GNNFMDGLKDGIILCEFINK 54 (136)
T ss_dssp HHHHHHHHHHHTCCCC---CSCTTHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC---cHHHHHHHccHHhHHHHHHh
Confidence 5789999998886432 36899999999999998863
No 35
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=76.01 E-value=2 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhc-CCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 21 ARDALLKWARRTT-SKYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 21 ak~~LL~W~q~~~-~~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
.+.-||.|++..+ .+++.+ ..-+||.++|-|++.
T Consensus 6 sr~ElL~WIN~~L~~~~~ki------E~L~~Ga~yCqlmd~ 40 (123)
T 2qjz_A 6 SRHDMLAWINESLQLNLTKI------EQLCSGAAYCQFMDM 40 (123)
T ss_dssp CHHHHHHHHHHHHTCCCCCG------GGGGGSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCchH------HHcCchHHHHHHHHH
Confidence 3566899998877 333322 236899999999873
No 36
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=75.52 E-value=0.66 Score=28.17 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCCC---eeecCCCCCcccchhhhhhhhc
Q psy3342 21 ARDALLKWARRTTSKYPG---VRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~---v~i~~fs~Sw~dG~af~aLih~ 60 (61)
.++.+..|....++..-. -...+|-.+-+||..+|-|+.+
T Consensus 10 ~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~ 52 (144)
T 1ujo_A 10 LEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNS 52 (144)
T ss_dssp HHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHH
Confidence 467889999988754311 1236888889999999998863
No 37
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.20 E-value=3.3 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcC-CCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 21 ARDALLKWARRTTS-KYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 21 ak~~LL~W~q~~~~-~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
.+.-||.|++..++ +|+.+ ..-+||.++|-|++.
T Consensus 23 sr~ElL~WIN~~L~~~~~ki------E~L~~GaayCQLmd~ 57 (159)
T 1wyo_A 23 SRHDMLAWVNDSLHLNYTKI------EQLCSGAAYCQFMDM 57 (159)
T ss_dssp CHHHHHHHHHHHSCCCCSSG------GGGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCchh------hhcCccHHHHHHHHH
Confidence 35669999998873 33322 236899999999873
No 38
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=69.89 E-value=0.82 Score=26.34 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
++.+..|....++.-. ..+|-.+-+||..+|-|+.+
T Consensus 5 e~e~~~WIe~~l~~~~---~~~l~~~L~dGvvLCkL~N~ 40 (108)
T 1h67_A 5 ERQLRVWIEGATGRRI---GDNFMDGLKDGVILCELINK 40 (108)
T ss_dssp SHHHHHHHHHHHSCCC---CSCHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC---cHHHHHHHccHHHHHHHHHH
Confidence 3568899998875432 36888889999999998753
No 39
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=69.50 E-value=1 Score=27.43 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhhc
Q psy3342 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 20 sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
..++.+..|....++.- + ..+|-.+-+||..+|-|+.+
T Consensus 17 ~~~~e~~~WIe~~l~~~--i-~~~l~~~L~DGvvLCkL~N~ 54 (146)
T 1wyn_A 17 QKEAELRTWIEGLTGLS--I-GPDFQKGLKDGTILCTLMNK 54 (146)
T ss_dssp THHHHHHHHHHHHHCCC--C-CSCHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--C-cHHHHHHHccHHHHHHHHHH
Confidence 34688999999888533 2 36888889999999999863
No 40
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=64.18 E-value=1.7 Score=26.76 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCCCee-ecCCCCCcccchhhhhhhhc
Q psy3342 22 RDALLKWARRTTSKYPGVR-VSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~-i~~fs~Sw~dG~af~aLih~ 60 (61)
.+.+..|....++.- ++ ..||-.+-+||..+|-|+.+
T Consensus 13 ~~e~~~WIe~~l~~~--l~~~~~l~~~LkdGvvLCkL~N~ 50 (159)
T 1p2x_A 13 VDEAKKWIEECLGTD--LGPTSTFEQSLRNGVVLALLVQK 50 (159)
T ss_dssp HHHHHHHHHHHHTSC--CCCGGGHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCChHHHHHHHcchHHHHHHHHH
Confidence 356788998887532 22 35788889999999998863
No 41
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=63.09 E-value=1.5 Score=28.10 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCC-CCeeecCCCCCcccchhhhhhhhc
Q psy3342 22 RDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 22 k~~LL~W~q~~~~~y-~~v~i~~fs~Sw~dG~af~aLih~ 60 (61)
.+.+..|....++.- | ...||-.+-+||..+|-|+.+
T Consensus 57 ~~e~~~WIe~~l~~~l~--~~~~f~~~LrDGvvLCkLiN~ 94 (203)
T 1p5s_A 57 VDEAKKWIEECLGTDLG--PTSTFEQSLRNGVVLALLVQK 94 (203)
T ss_dssp HHHHHHHHHHHHTSCCC--CGGGHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC--ChHHHHHHHcchHHHHHHHHH
Confidence 467778998877432 2 245888899999999999863
No 42
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.83 E-value=4.9 Score=23.02 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcC--CC--CCeeecCCCCCcccchhhhhhh
Q psy3342 22 RDALLKWARRTTS--KY--PGVRVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 22 k~~LL~W~q~~~~--~y--~~v~i~~fs~Sw~dG~af~aLi 58 (61)
++..+.|.+...+ ++ .++.+.+|. -||.++|.+=
T Consensus 29 ~~~V~~WL~Wavke~~~dl~~i~~~~f~---m~G~~LC~ms 66 (92)
T 2e8p_A 29 KTQVLDWISYQVEKNKYDASAIDFSRCD---MDGATLCNCA 66 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTTCC---CCSHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCChhhcC---CCHHHHHcCC
Confidence 6778888887654 34 356777773 7999999863
No 43
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=59.95 E-value=1.2 Score=27.33 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCCeee-----cCCCCCcccchhhhhhhhc
Q psy3342 22 RDALLKWARRTTSKYPGVRV-----SDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i-----~~fs~Sw~dG~af~aLih~ 60 (61)
++.+..|....++.. ++. .+|-.+-+||..+|-|+.+
T Consensus 19 e~e~~~WIe~~l~~~--l~~~~~~~~~~~~~LkDGvvLCkL~N~ 60 (155)
T 1wym_A 19 EQILIQWITTQCRKD--VGRPQPGRENFQNWLKDGTVLCELINA 60 (155)
T ss_dssp HHHHHHHHHHHSSSC--CCCCCSSHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCCCcccHHHHHHHHcchHHHHHHHHH
Confidence 668999999888543 222 4788889999999999863
No 44
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=57.51 E-value=1.8 Score=23.97 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhcCCC----CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY----PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y----~~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|.+...+.| +++....|. -||.++|+|
T Consensus 16 ~~~V~~WL~w~~~e~~l~l~~~~~~~f~---m~G~~Lc~l 52 (82)
T 1sv0_C 16 RADVWKWLINMAVSEGLEVTAELPQKFP---MNGKALCLM 52 (82)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTHHHHTCC---SCHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccccCC---CCHHHHHhC
Confidence 345666766544443 456677784 599999986
No 45
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=54.28 E-value=8 Score=23.96 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhc-CCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTT-SKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~-~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
.+..||.|++... -+|. .|.++ .+|-|+|-|++
T Consensus 7 SR~eLL~WiN~~L~~n~t--kIE~l----~sGAaYCQlmD 40 (145)
T 4abo_I 7 SRQELLAWINQVTSLGLT--RIEDC----GKGYAMIQIFD 40 (145)
T ss_dssp CHHHHHHHHHHHHTCCCC--SGGGG----GGSHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCcc--hHHHc----cccHHHHHHHH
Confidence 3566999999876 4453 34454 67999999886
No 46
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=51.98 E-value=11 Score=22.59 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhc-CCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTT-SKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~-~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
.+..||.|++... .+|.. |.++ .+|-|+|-|++
T Consensus 11 sR~elL~WiN~~L~~n~~k--iEel----~tGaayCQl~d 44 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNYKK--IEEC----GTGAAYCQIMD 44 (127)
T ss_dssp CHHHHHHHHHHHHTCCCCS--GGGG----GGSHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCccH--HHHc----cchHHHHHHHh
Confidence 3567999999865 45654 4455 67999998876
No 47
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=48.02 E-value=3.2 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHhhcC-CCCC---eeecCC-CCCcccchhhhhhhh
Q psy3342 19 VSARDALLKWARRTTS-KYPG---VRVSDF-TSSWRDGLAFNAIIH 59 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~-~y~~---v~i~~f-s~Sw~dG~af~aLih 59 (61)
...++.+..|....+. ..++ .+..+| ..+-+||..+|-|+.
T Consensus 11 ~~~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN 56 (126)
T 2l3g_A 11 MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLE 56 (126)
T ss_dssp CCHHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHH
Confidence 3567889999988743 2211 123456 578899999999875
No 48
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=46.93 E-value=4 Score=25.93 Aligned_cols=36 Identities=8% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCCCCCee-ecCCCCCcccchhhhhhhhc
Q psy3342 23 DALLKWARRTTSKYPGVR-VSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 23 ~~LL~W~q~~~~~y~~v~-i~~fs~Sw~dG~af~aLih~ 60 (61)
+.+..|....++.- ++ ..+|..+-+||..+|-|+.+
T Consensus 50 ~e~~~WIe~~lg~~--l~~~~~l~~~LrdGvvLCkL~N~ 86 (193)
T 3i6x_A 50 EEAKRWMEACLGED--LPPTTELEEGLRNGVYLAKLGNF 86 (193)
T ss_dssp HHHHHHHHHHHSSC--CCCGGGHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCChHHHHHHhccHHHHHHHHHH
Confidence 46778999888532 22 24788999999999998753
No 49
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=45.73 E-value=2.8 Score=26.47 Aligned_cols=36 Identities=8% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCCee-ecCCCCCcccchhhhhhhhc
Q psy3342 23 DALLKWARRTTSKYPGVR-VSDFTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 23 ~~LL~W~q~~~~~y~~v~-i~~fs~Sw~dG~af~aLih~ 60 (61)
+.+..|....++.- ++ ..+|-.+-+||..+|-|+.+
T Consensus 28 ~e~~~WIe~~lg~~--lp~~~~f~~~LrDGvvLCkL~N~ 64 (190)
T 2rr8_A 28 EEAKRWMEACLGED--LPPTTELEEGLRNGVYLAKLGNF 64 (190)
T ss_dssp HHHHHHHHHHSCCC--CCCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCChhHHHHHHcchhhHHHHHHH
Confidence 67888998887532 22 35788889999999999863
No 50
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=43.41 E-value=11 Score=21.18 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCCC--CeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKYP--GVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~--~v~i~~fs~Sw~dG~af~aL 57 (61)
++-...|++.....|. .+..+.| =-||.++|+|
T Consensus 17 ~~~V~~WL~w~~~ef~L~~~~~~~f---~mdGk~Lc~L 51 (89)
T 1ji7_A 17 RDDVAQWLKWAENEFSLRPIDSNTF---EMNGKALLLL 51 (89)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCTTTT---CSCHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCchhcC---CCCHHHHHcC
Confidence 3456667766665553 3444455 3799999986
No 51
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=41.52 E-value=8.2 Score=22.57 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhhcC-CCCCee---ecC-CCCCcccchhhhhhhhc
Q psy3342 19 VSARDALLKWARRTTS-KYPGVR---VSD-FTSSWRDGLAFNAIIHR 60 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~-~y~~v~---i~~-fs~Sw~dG~af~aLih~ 60 (61)
+...+.+..|...... +.++.+ -.+ |-.+-+||..+|-|+.+
T Consensus 5 ~~~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~ 51 (121)
T 1wyr_A 5 SSGEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINR 51 (121)
T ss_dssp CCSHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHH
Confidence 3456778899988743 222211 223 46778999999998863
No 52
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=40.67 E-value=17 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.402 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 21 ARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
.+.-||.|++...... -..|.++ .+|-|+|-|++
T Consensus 16 sR~elL~WiN~~L~~~-~~kiEel----~tGaayCQlmd 49 (268)
T 2r8u_A 16 SRHDMLAWINESLQLN-LTKIEQL----CSGAAYCQFMD 49 (268)
T ss_dssp CHHHHHHHHHHHHTCC-CCCGGGG----GGSHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC-cchHHHc----ccchHHHHHHH
Confidence 4567999998877432 1345555 66999999876
No 53
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=40.27 E-value=10 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|++.....| +++++.+|. -+|..+|.|
T Consensus 17 ~~~V~~Wl~w~~~~f~l~~~~~~~f~---~~G~~Lc~m 51 (241)
T 2qb0_B 17 RDDVAQWLKWAENEFSLRPIDSNTFE---MNGKALLLL 51 (241)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCTTTTC---SCHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHhcC---CChHHHHHc
Confidence 455666666555444 456778886 599999986
No 54
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=39.88 E-value=41 Score=17.53 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCee
Q psy3342 18 NVSARDALLKWARRTTSKYPGVR 40 (61)
Q Consensus 18 ~~sak~~LL~W~q~~~~~y~~v~ 40 (61)
...+|..|..|||..-.. |.-.
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~ 27 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFK 27 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEE
T ss_pred CCCHHHHHHHHHHHcCCC-CEEE
Confidence 457899999999987654 5433
No 55
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=39.48 E-value=7.4 Score=21.78 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhcCCCCCe-eecCCCCCcccchhhhhhh
Q psy3342 21 ARDALLKWARRTTSKYPGV-RVSDFTSSWRDGLAFNAII 58 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~v-~i~~fs~Sw~dG~af~aLi 58 (61)
+-+-|..+|.+.....|-+ .|..=..-|++-..+|+|+
T Consensus 39 aaadL~~yc~~~~~~DpLl~Gvp~~~NPFkeKk~~c~lL 77 (77)
T 3v5w_G 39 AAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFSAIL 77 (77)
T ss_dssp HHHHHHHHHHHSGGGCTTTSCCCGGGCTTTTC-------
T ss_pred HHHHHHHHHHhcCCCCCCcCCCCCCCCCCCCCcCccccC
Confidence 3456889999888766643 2221123388888888875
No 56
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.86 E-value=2.7 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHhhcCCCC--CeeecCCCCCcccchhhhhh
Q psy3342 24 ALLKWARRTTSKYP--GVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 24 ~LL~W~q~~~~~y~--~v~i~~fs~Sw~dG~af~aL 57 (61)
....|.+...+.|. ++.+..|. -||.++|+|
T Consensus 31 ~V~~WL~W~~~ef~L~~i~~~~f~---m~G~~LC~l 63 (96)
T 2dkx_A 31 NVQKWLLWTEHQYRLPPMGKAFQE---LAGKELCAM 63 (96)
T ss_dssp THHHHHHHHHHHTTCCCCHHHHSS---CCHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCCCcccCC---CCHHHHHhC
Confidence 44556665555552 33333333 589999986
No 57
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=33.54 E-value=14 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.390 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|.+...+.| +++.+++| =-||.++|.+
T Consensus 28 ~~~V~~WL~W~~~ef~L~~v~~~~f---~m~G~~LC~l 62 (91)
T 1sxd_A 28 TDQVLHWVVWVMKEFSMTDIDLTTL---NISGRELCSL 62 (91)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCSGGG---CSCHHHHHHS
T ss_pred HHHHHHHHHHHHHccCCCCCChhhC---CCCHHHHHcC
Confidence 455566666555445 34556666 3689999986
No 58
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=33.30 E-value=8 Score=22.12 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|++...+.| +++.+..|.. -||+++|+|
T Consensus 32 ~~~V~~WL~W~~~ef~L~~i~~~~F~~--m~G~~LC~l 67 (97)
T 1sxe_A 32 TDHVRQWLEWAVKEYGLPDVNILLFQN--IDGKELCKM 67 (97)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCGGGSTT--CCHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHhcCC--CCHHHHHhC
Confidence 466777777666555 2344444411 689999986
No 59
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=32.16 E-value=54 Score=16.88 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHhhcCCCCC
Q psy3342 19 VSARDALLKWARRTTSKYPG 38 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~~y~~ 38 (61)
..+|..|..|||..-...|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~ 22 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPV 22 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCE
T ss_pred CCHHHHHHHHHHHcCCCCCE
Confidence 46899999999987655444
No 60
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=31.80 E-value=13 Score=20.76 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|.+...+.| +++.+++|. -||.++|++
T Consensus 15 ~~~V~~WL~W~~~ef~L~~i~~~~F~---m~G~~LC~l 49 (85)
T 1sv0_A 15 REDVLVFLRFCVREFDLPKLDFDLFQ---MNGKRLCLL 49 (85)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCGGGGC---SCHHHHTTC
T ss_pred HHHHHHHHHHHHHccCCCCCChhhCC---CCHHHHHcC
Confidence 344556655444444 456667773 799999986
No 61
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=31.29 E-value=11 Score=23.13 Aligned_cols=37 Identities=16% Similarity=0.445 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCeeecCCCCCcccchhhhhhhh
Q psy3342 19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~~y~~v~i~~fs~Sw~dG~af~aLih 59 (61)
....++|+.|++.=... -++.++ ..-.||.+|.-++|
T Consensus 8 ~~~~~aLl~W~~tf~~~---~~~~~~-~dL~DG~~L~~iL~ 44 (164)
T 1wix_A 8 LPLCDSLIIWLQTFKTA---SPCQDV-KQLTNGVTMAQVLH 44 (164)
T ss_dssp CHHHHHHHHHHTTCCCS---SCCCSH-HHHTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC---CCcCcH-HHhccHHHHHHHHH
Confidence 45678999998542211 133333 22678999887776
No 62
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.10 E-value=7.7 Score=22.19 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 23 DALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 23 ~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
+....|++...+.| +++.+..|. =-||+++|+|
T Consensus 30 ~~V~~WL~W~~~ef~L~~v~~~~F~--~m~G~~LC~l 64 (98)
T 1x66_A 30 EHVRQWLEWAIKEYSLMEIDTSFFQ--NMDGKELCKM 64 (98)
T ss_dssp THHHHHHHHHHHHTTCCSCCGGGGT--TCCHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCChhhCC--CCCHHHHHcC
Confidence 45566666555555 233334331 1689999986
No 63
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.22 E-value=11 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcCCCCCeeecCCCCCc--ccchhhhhh
Q psy3342 22 RDALLKWARRTTSKYPGVRVSDFTSSW--RDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~~v~i~~fs~Sw--~dG~af~aL 57 (61)
++....|++...+.|. +.-.|+. .| -||.++|+|
T Consensus 43 ~~~V~~WL~Wa~~ef~-L~~id~~-~Fq~mnGk~LC~L 78 (128)
T 2ytu_A 43 QEHVRQWLEWAIKEYS-LMEIDTS-FFQNMDGKELCKM 78 (128)
T ss_dssp TTHHHHHHHHHHHHTC-CCSCCCG-GGSSCCTTHHHHC
T ss_pred HHHHHHHHHHHHHhcC-CCCCChH-hCCCCCHHHHHcC
Confidence 3556667666665562 3223332 35 489999986
No 64
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=26.45 E-value=25 Score=20.48 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCCC--CCeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKY--PGVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y--~~v~i~~fs~Sw~dG~af~aL 57 (61)
++....|.+...+.| +++.+.+|. -||.++|.+
T Consensus 46 ~~~V~~WL~W~~~ef~L~~v~~~~F~---m~G~~LC~l 80 (110)
T 2jv3_A 46 ETHVRDWVMWAVNEFSLKGVDFQKFC---MSGAALCAL 80 (110)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCTTTTC---CCHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCChhcCC---CCHHHHHhC
Confidence 455666666555444 345566773 699999986
No 65
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=25.24 E-value=49 Score=17.99 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHhhc
Q psy3342 17 PNVSARDALLKWARRTT 33 (61)
Q Consensus 17 ~~~sak~~LL~W~q~~~ 33 (61)
....+|..|..|||+.-
T Consensus 12 ~~kd~Ks~LqE~~q~~~ 28 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIG 28 (90)
T ss_dssp -CCCHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHhcC
Confidence 34689999999998653
No 66
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=24.14 E-value=21 Score=20.10 Aligned_cols=33 Identities=18% Similarity=0.500 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhcCCCC--CeeecCCCCCcccchhhhhh
Q psy3342 22 RDALLKWARRTTSKYP--GVRVSDFTSSWRDGLAFNAI 57 (61)
Q Consensus 22 k~~LL~W~q~~~~~y~--~v~i~~fs~Sw~dG~af~aL 57 (61)
.+....|.+.....|. ++..+.|. -||.++|.|
T Consensus 17 ~~~V~~WL~w~~~ef~L~~i~~~~f~---mdGk~Lc~L 51 (93)
T 2qar_B 17 RDDVAQWLKWAENEFSLSPIDSNTFE---MNGKALLLL 51 (93)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCGGGGC---SCHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCcchhcCC---CCHHHHHcC
Confidence 3456667766665553 34455553 799999986
No 67
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=23.14 E-value=3.5 Score=21.25 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=10.2
Q ss_pred CCCCcccchhhhhhh
Q psy3342 44 FTSSWRDGLAFNAII 58 (61)
Q Consensus 44 fs~Sw~dG~af~aLi 58 (61)
|-.||.||.++-.++
T Consensus 10 F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 10 FLDSWLDGTASEELL 24 (51)
T ss_dssp HHHHHHHTCCCHHHH
T ss_pred HHHHHhcchhhHHHH
Confidence 456899998765543
No 68
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=21.65 E-value=83 Score=16.34 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHhhcCCCCC
Q psy3342 20 SARDALLKWARRTTSKYPG 38 (61)
Q Consensus 20 sak~~LL~W~q~~~~~y~~ 38 (61)
.+|..|..|||..-...|.
T Consensus 5 n~Kt~LqE~~q~~~~~~p~ 23 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPL 23 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCE
T ss_pred CHHHHHHHHHHHhCCCCCe
Confidence 5788999999987654443
No 69
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=21.52 E-value=67 Score=17.92 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCe
Q psy3342 19 VSARDALLKWARRTTSKYPGV 39 (61)
Q Consensus 19 ~sak~~LL~W~q~~~~~y~~v 39 (61)
...|..|..|||.. ...|.-
T Consensus 6 ~d~Kt~LqE~~Qk~-~~~P~Y 25 (99)
T 1whq_A 6 SGIKNFLYAWCGKR-KMTPAY 25 (99)
T ss_dssp CSSHHHHHHHHHHT-TCCCEE
T ss_pred CCHHHHHHHHHHHC-CCCCeE
Confidence 45799999999998 555543
No 70
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=20.41 E-value=98 Score=15.60 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhcCCCCC
Q psy3342 21 ARDALLKWARRTTSKYPG 38 (61)
Q Consensus 21 ak~~LL~W~q~~~~~y~~ 38 (61)
++..|..|||..-...|.
T Consensus 2 p~s~LqE~~q~~~~~~p~ 19 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPE 19 (69)
T ss_dssp HHHHHHHHHHHHTCCCCE
T ss_pred CHHHHHHHHHHcCCCCCE
Confidence 567899999987655443
Done!