RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3342
(61 letters)
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 88.5 bits (220), Expect = 3e-25
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
G+ + ++ LL+W + T+ YPGV VSD +SSW DGLA A+++R
Sbjct: 1 GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYR 47
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology
domain, actin binding, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 88.6 bits (220), Expect = 3e-25
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
G+ + + LL W R T Y V + +F+SSW DG+AF A++H
Sbjct: 1 GSSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHN 47
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2e9k_A
Length = 121
Score = 88.5 bits (220), Expect = 4e-25
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 13 MGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
V+ LL W +R T Y GV V+D T SW+ GLA AIIHR
Sbjct: 2 SSGSSGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHR 49
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 88.6 bits (220), Expect = 4e-25
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
G+ + A+DALL W + T+ YP V V +FT+SWRDGLAFNAI+H+
Sbjct: 1 GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHK 47
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin
binding, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 87.0 bits (216), Expect = 1e-24
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 14 GAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
+A +LL W + T Y GV++++FT+SWR+GL+F AI+H
Sbjct: 3 SGSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHH 49
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 86.6 bits (215), Expect = 2e-24
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 13 MGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
M ++ LL W R+TT Y V V +FT+SW DGLAFNA++HR
Sbjct: 1 MSDLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHR 48
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 85.4 bits (212), Expect = 3e-24
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
SA+DALL W + T+ YP V + +FT+SWRDG+AFNA+IH+
Sbjct: 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHK 43
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 66.9 bits (163), Expect = 1e-15
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
S + LL+WA ++++F++ +D A+ ++++
Sbjct: 168 SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQ 208
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 63.5 bits (154), Expect = 2e-14
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 12 VMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
V G +++A++ LL W++R Y G+R +FT+SWRDG FNAIIHR
Sbjct: 125 VSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHR 173
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 63.0 bits (153), Expect = 3e-14
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 4 WSILISDIVMGA-EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
W+I++ + SA++ LL W +R T+ Y V V +F +SW+DGLA A+IHR
Sbjct: 123 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHR 180
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 63.0 bits (152), Expect = 5e-14
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 4 WS-ILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
W+ IL I + SA++ LL W +R T+ Y V + +F SW+DGL F A+IHR
Sbjct: 104 WTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHR 161
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 60.5 bits (146), Expect = 3e-13
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 13 MGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
G +++A++ LL W++R Y G+R +FTSSWRDG FNAIIHR
Sbjct: 182 SGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHR 229
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 58.1 bits (140), Expect = 2e-12
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
++ LL W R++T YP V V +FT+SW DGLA NA+IH
Sbjct: 135 NSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHS 175
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 57.8 bits (139), Expect = 3e-12
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 NVSARDALLKWARRTTSK-YPGVRVSDFTSSWRDGLAFNAIIHR 60
+ LLKW K VS+F++ +D A+ +++
Sbjct: 150 RLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNV 193
Score = 52.0 bits (124), Expect = 4e-10
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 4 WSILISDIVMGAEPNVSARDALLKWARRTTSKY-PGVRVSDFT-SSWRDGLAFNAIIHR 60
L+ + +L WA R +++ F S GL F ++
Sbjct: 381 MLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWA 439
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 55.1 bits (132), Expect = 3e-11
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
+ + LL W + K P + +++F+ W+ G A A++
Sbjct: 170 TPKQRLLGWIQN---KLPQLPITNFSRDWQSGRALGALVDS 207
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 53.8 bits (129), Expect = 7e-11
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 22 RDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
+ LL W + K P + +++F +W+DG A A++
Sbjct: 145 KQRLLGWIQN---KIPYLPITNFNQNWQDGKALGALVDS 180
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 54.0 bits (129), Expect = 8e-11
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 2 EQWSILISDIVMGAEPNVSARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHR 60
E + +L D + + LL+W VS+F+ DG + ++++
Sbjct: 143 ELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQ 202
Score = 53.2 bits (127), Expect = 2e-10
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 21 ARDALLKWARRTTSK-YPGVRVSDFTS-SWRDGLAFNAIIHR 60
+ ++ WA +K G ++ F S G+ ++H
Sbjct: 409 SDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHG 450
>3ea1_A 1-phosphatidylinositol phosphodiesterase;
phosphatidylinositol-specific phospholipase C, PI-PLC,
dimer, interfacially impaired; 1.75A {Bacillus
thuringiensis} PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A*
1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Length = 298
Score = 23.5 bits (50), Expect = 5.4
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 23 DALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
+ ++ G + D+ + L + +I N
Sbjct: 254 PEIANDIKQKNPTRVGWVIQDYINEKWSPLLYQEVIRAN 292
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON
enzyme, metal dependent, NEW fold, GDP binding, MCSG;
HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP:
d.340.1.1 PDB: 2g9i_A
Length = 254
Score = 23.1 bits (49), Expect = 8.3
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 16 EPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAI 57
+P+ SA + T + + +R G+ AI
Sbjct: 127 DPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAI 168
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A
{Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Length = 453
Score = 22.8 bits (48), Expect = 9.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 5 SILISDIVMGAEPNVSARDALLKWARR 31
I+ G + + R L+++ R
Sbjct: 419 VQFINGYSTGDLESKTKRAPLVQFERN 445
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.131 0.411
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 965,313
Number of extensions: 39287
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 22
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)