RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3342
(61 letters)
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 68.8 bits (168), Expect = 6e-18
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
SA+DALL W + T+ YP V + +FT+SWRDG+AFNA+IH+
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHK 42
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 68.0 bits (166), Expect = 2e-17
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 7 LISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
++ +I+ G + ++ LL W R++T YP V V +FT+SW DGLA NA+IH
Sbjct: 4 VMKNIMAGLQ-QTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHS 56
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 66.0 bits (161), Expect = 5e-17
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 19 VSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
++ LL W R+TT Y V V +FT+SW DGLAFNA++HR
Sbjct: 4 TNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHR 45
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 66.1 bits (161), Expect = 6e-17
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 18 NVSARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
+++A++ LL W++R Y G+R +FT+SWRDG FNAIIHR
Sbjct: 4 DMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHR 46
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 58.5 bits (141), Expect = 7e-13
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
Query: 1 MEQWSILISDIVMGAEPNVSARDALLKWARRTTSKYPGVRVSDF-TSSWRDGLAFNAIIH 59
M + +S D + G ++ F S G+ ++H
Sbjct: 382 MRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLH 441
Query: 60 R 60
Sbjct: 442 G 442
Score = 53.1 bits (127), Expect = 6e-11
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 19 VSARDALLKWARRTTSKY-PGVRVSDFTSSWRDGLAFNAIIHR 60
+ LL+W VS+F+ DG + ++++
Sbjct: 152 LPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQ 194
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 55.0 bits (132), Expect = 1e-11
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 7 LISDIVMGAEPNVSARDALLKWARRTTSKY-PGVRVSDFTS-SWRDGLAFNAIIHR 60
L+ + +L WA R +++ F S GL F ++
Sbjct: 378 LLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWA 433
Score = 54.6 bits (131), Expect = 2e-11
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 19 VSARDALLKWARR-TTSKYPGVRVSDFTSSWRDGLAFNAIIHR 60
+ LLKW VS+F++ +D A+ +++
Sbjct: 145 LPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNV 187
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 49.6 bits (118), Expect = 2e-10
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIH 59
S + LL+WA ++++F++ +D A+ +++
Sbjct: 9 SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLN 48
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 40.4 bits (94), Expect = 8e-07
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 20 SARDALLKWARRTTSK-YPGVRVSDFT-SSWRDGLAFNAIIHR 60
D ++ W RT S+ + F + LA +I
Sbjct: 7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDA 49
>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Bacillus cereus [TaxId: 1396]}
Length = 296
Score = 25.2 bits (54), Expect = 0.57
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 23 DALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
+ + ++ G + D+ + L + +I N
Sbjct: 254 PEIANYIKQKNPARVGWVIQDYINEKWSPLLYQEVIRAN 292
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 25.1 bits (54), Expect = 0.59
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 3 QWSILISDIVMGAEP-NVSAR----DALLKWARRTTS 34
+W + + + ++ AEP N +AR DAL + + +
Sbjct: 447 RWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 483
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 24.0 bits (52), Expect = 1.2
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 30 RRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
P T W + +HR
Sbjct: 84 AALPPGCPDALQYRATLDWPAAGHLSLTVHRV 115
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 127
Score = 22.9 bits (49), Expect = 2.6
Identities = 6/42 (14%), Positives = 10/42 (23%)
Query: 20 SARDALLKWARRTTSKYPGVRVSDFTSSWRDGLAFNAIIHRN 61
D + D + F+ + HRN
Sbjct: 69 FQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRN 110
>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi
[TaxId: 1708]}
Length = 366
Score = 22.7 bits (48), Expect = 4.3
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 17 PNVSARDALLKWARRTTSKYPGVRVSDF---TSSWRDGLAFNAIIHR 60
D + T +P V D + R GLA N
Sbjct: 40 LTTGPTDGTTSDVKNVTGDFPAVFGWDTLIIEGNERPGLAENTRDEN 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.131 0.411
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 232,187
Number of extensions: 7186
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 16
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)