BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3343
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 221 bits (562), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 179/279 (64%), Gaps = 12/279 (4%)
Query: 6 GSSYKTKKAKELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATRL 62
GSSYK KK K + H WN+LF+G NA+A+A+A+ YNATK++V T A R+
Sbjct: 490 GSSYKKKKEAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRV 549
Query: 63 AMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD 122
A+GET++V++ R+FL +NGV LD+F+Q RSK +IL KNLP TL +++ F FG
Sbjct: 550 ALGETQLVQEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGS 609
Query: 123 LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGK 182
LGRVL+P GIT +VEFL+ +A+ AF LAY+KF VPLYLEWAP GVF A +K +
Sbjct: 610 LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQ 669
Query: 183 EKEKNEEGEGEEE-------KKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNL 235
++ E+ E E+E +K + + G E EE EE+EE E P TL+IKNL
Sbjct: 670 HEQPAEKAEVEQETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNL 729
Query: 236 NFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
NF++TE++++ F K G I S T+++KK+ G LSM
Sbjct: 730 NFSTTEETLKGVFSKVGAIKSCTISKKKN--KAGVLLSM 766
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQ 141
QV + ++ ILV+N+P++ +++ LF FG+L V +P + G V+F+
Sbjct: 816 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 875
Query: 142 KNQAKAAFNSLAY-TKFKEVPLYLEWA 167
K AK AFN+L + T L LEWA
Sbjct: 876 KQDAKKAFNALCHSTHLYGRRLVLEWA 902
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 195 EKKENTAEEDNQQGVPEVEENVEEDEEREPEPDT-TLYIKNLNFNSTEDSIRRHFKKCGP 253
EK+ TA + P + E+EE E D+ L+++NL++ S+E+ + + F GP
Sbjct: 366 EKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGP 425
Query: 254 IASV 257
++ +
Sbjct: 426 LSEL 429
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/283 (45%), Positives = 175/283 (61%), Gaps = 17/283 (6%)
Query: 7 SSYKTKKAKELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATRLA 63
SSYK KK + K + H WN+LF+G NA+A+A+A+ YNATK++V T A R+A
Sbjct: 494 SSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVA 553
Query: 64 MGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 123
+GET++V++ R FL +NGV LD+F+Q RSK +ILVKNLP TL L+ F FG L
Sbjct: 554 LGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSL 613
Query: 124 GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKE 183
GRVL+P GIT +VEFL+ +A+ AF LAY+KF VPLYLEWAP GVF+ + K +
Sbjct: 614 GRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQ 673
Query: 184 KEKNEEGE-----------GEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE-PDTTLY 231
+E E GE + EN EE ++EE EE+EE E P TL+
Sbjct: 674 DTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLF 733
Query: 232 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
IKNLNF++TE+ ++ F K G + S ++++KK+ G LSM
Sbjct: 734 IKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKN--KAGVLLSM 774
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 81 GVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGI 133
V L QV ++ ILV+N+P++ +++ LF FG+L V +P +
Sbjct: 816 AVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRG 875
Query: 134 TGLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGVFAEA 175
G V+FL K AK AFN+L + T L LEWA V +A
Sbjct: 876 FGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQA 918
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 149/268 (55%), Gaps = 25/268 (9%)
Query: 12 KKAKELKK---IAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TGSGAATRLAMGE 66
KK +ELK+ A +WNSL++ +A+ ++A K ++L T S +A + A+ E
Sbjct: 418 KKQRELKRKNTAASSTFSWNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTE 477
Query: 67 TEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 126
T ++++T+ F EE+GV LDAF ARS ++LVKN PY T +L +LF PFG+LGR+
Sbjct: 478 THVIQETKNFFEEHGVDLDAFKNA--ARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRI 535
Query: 127 LVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEK 186
L+PP G ++EFL + AF+ LAYT+ K LYLE AP VF + ++S
Sbjct: 536 LIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVFTTSFKQS------- 588
Query: 187 NEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246
G+ E +K N E + V E+ E T+Y+KNLNF++ ++ ++
Sbjct: 589 ---GKPELAQKVNAVEATTSEKVGT--------EDIESLDTATIYVKNLNFSTKQEEFQK 637
Query: 247 HFKKCGPIASVTVARKKDPKSPGQFLSM 274
FK S + K DPK PG++LSM
Sbjct: 638 VFKPLEGYLSAVIRAKPDPKRPGKYLSM 665
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 79 ENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 129
EN V N + + +KR+ L +NL Y DLK+LF PFG L +V +P
Sbjct: 306 ENNVSEQERNIQLISETKRLFL-RNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSL 152
IL+KNLP+ D+++L +G L V VP G EF+ +A A +L
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGF-AFAEFVTAREAANAMRAL 781
Query: 153 AYTKFKEVPLYLEWA 167
T L L++A
Sbjct: 782 KNTHLLGRHLVLQYA 796
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 151/270 (55%), Gaps = 10/270 (3%)
Query: 6 GSSYKTKKAKELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLTGS--GAATRLA 63
SS+K +K ++ K +G H WN+LF+ ++AI ++AE Y T+ ++L + A R+
Sbjct: 460 SSSFKAEKEQKQKTTSGSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMT 519
Query: 64 MGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 123
+ ET ++ +T+ FLE+ GV + RS ++LVKN+P++T +L LF FG+L
Sbjct: 520 LMETHVINETKKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGEL 579
Query: 124 GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFA-EAKEKSKGK 182
RV++ P L+E++ N+AK F +LAY+KF VPLYLEWAPEGVF A K K
Sbjct: 580 SRVVLSPARTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKK 639
Query: 183 EKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTED 242
++ + + +KKE + ++ + + + +YIKNLN+ +T +
Sbjct: 640 SEKSEKSSDSSNDKKEVESTTKTAATTTTTKKGTDNNTQ-------FVYIKNLNWKTTNE 692
Query: 243 SIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ FK +V +A K +PK+P + L
Sbjct: 693 TLVGKFKSLKDYVNVNIATKANPKNPSERL 722
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP--PYGIT---GLVEFLQKNQAKAAFNSLA 153
I++KNLP+ + +++ LF +G++ V +P P G G VEFL + +AK A +L
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALG 856
Query: 154 YTKFKEVPLYLEWA 167
+ F L L++A
Sbjct: 857 NSHFYGRHLVLQYA 870
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQKNQAKAAFNS 151
I V+NL Y T DL+ +F FG + + +P GI ++ + +N A A N
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPEN-AVQALND 421
Query: 152 LAYTKFKEVPLYL---EWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTA 201
+ F+ +++ + AP F+E K+ + + + + E+E+K+ T
Sbjct: 422 MDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTT 474
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 199 NTAEEDNQQGVPE-VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
N E + ++ +PE +++++ + + +P + + IKNL F ST IR+ F G I SV
Sbjct: 765 NVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSV 824
Query: 258 TVARK 262
+ +K
Sbjct: 825 RIPKK 829
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 21/256 (8%)
Query: 21 AGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TGSGAATRLAMGETEIVEKTRAFLE 78
A +WNSL++ +A+ ++AE +KA++L T S AA + A ET ++++T+A+ +
Sbjct: 402 ASSTFSWNSLYMNADAVMSSVAERIGVSKADLLDPTSSDAAVKQAHAETHVIQETKAYFK 461
Query: 79 ENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVE 138
NGV LDAF Q R ILVKN Y T DL+ LFEPFG + R+L+PP G +V
Sbjct: 462 ANGVNLDAFKQ--RERGNLAILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVA 519
Query: 139 FLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKE 198
F + ++A+ AF SLAY K + L+LE AP+ +F EA + E +G
Sbjct: 520 FARPDEAQKAFKSLAYRKLGDSILFLEKAPKDLF-EADVPPQNPLPETKAVSQGFSTADT 578
Query: 199 NTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVT 258
A+E +++ + TL+IKNLNF++T S+ F+ S
Sbjct: 579 FAADEGDEEVMATA----------------TLFIKNLNFSTTNQSLIEAFRPLDGFVSAR 622
Query: 259 VARKKDPKSPGQFLSM 274
+ K DPK+PGQ LSM
Sbjct: 623 IKTKPDPKNPGQTLSM 638
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQ 144
+ AR +II +KNLP++ D+++LF +G L V VP G G +F+ +
Sbjct: 692 IAARRTKII-IKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGF-GFADFVSARE 749
Query: 145 AKAAFNSLAYTKFKEVPLYLEWA 167
A+ A ++L T L LE+A
Sbjct: 750 AENAMDALKNTHLLGRRLVLEFA 772
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 147/281 (52%), Gaps = 31/281 (11%)
Query: 3 IDEG--SSYKTKKAKELKK---IAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TG 55
IDE S KK K++K+ + +WNSL++ T+A+ ++AE +KA++L T
Sbjct: 385 IDEHELSKLPLKKQKQIKRKLEASSSTFSWNSLYMNTDAVMSSVAERLGVSKADLLDPTS 444
Query: 56 SGAATRLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKA 115
+ AA + A ET ++++T+A+ NGV LDAF Q R ILVKN Y DL+
Sbjct: 445 ADAAVKQAHAETHVIQETKAYFTANGVNLDAFKQ--RERGNTAILVKNFSYGVKVDDLRK 502
Query: 116 LFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF--A 173
LFEP+G + R+L+PP G +VEF + ++A+ AF LAY K + L+LE AP +F
Sbjct: 503 LFEPYGQITRLLMPPSGTIAIVEFARPDEAQKAFKGLAYRKVGDSILFLEKAPANLFDAT 562
Query: 174 EAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIK 233
A + S + K + QG + ED + EP +TL++K
Sbjct: 563 TAPQTSVLETKAVS-------------------QGFSTADTFAAEDGD-EPVVTSTLFVK 602
Query: 234 NLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
NLNF++T + FK S + K DPK PG+ LSM
Sbjct: 603 NLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSM 643
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQ 144
+ AR +II +KNLP++ D+++LF +G L V VP G G +F+ +
Sbjct: 697 IAARRTKII-IKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGF-GFADFVSARE 754
Query: 145 AKAAFNSLAYTKFKEVPLYLEWAPE 169
A+ A ++L T L LE+A E
Sbjct: 755 AENAMDALKNTHLLGRRLVLEFANE 779
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 144/269 (53%), Gaps = 16/269 (5%)
Query: 12 KKAKELKKIAGHVHT---WNSLFLGTNAIAEAMAETYNATKAEVLT--GSGAATRLAMGE 66
KK +ELKK A T WNSL++ ++A+ E++A TK++++ S +A + A+ E
Sbjct: 405 KKQRELKKKAQAAKTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVKQALAE 464
Query: 67 TEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 126
++ R + E+ GV L +F++ + R +IILVKN P+ T ++ LF +G L R+
Sbjct: 465 AHVIGDVRKYFEDRGVDLTSFDK--KERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRM 522
Query: 127 LVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEK 186
L+PP G ++EF A+AAF+ LAY +FK LYLE P+ +F +E
Sbjct: 523 LMPPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFT--------REPTT 574
Query: 187 NEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDE-EREPEPDTTLYIKNLNFNSTEDSIR 245
NE E+++ A E + E+ E+DE E P +++KNLNF +T ++
Sbjct: 575 NEVATIPEQQQNEHAVEAKISANEILGESKEDDEIESVQGPTVAVFVKNLNFATTVQALS 634
Query: 246 RHFKKCGPIASVTVARKKDPKSPGQFLSM 274
FK TV K DPK+ G+ LSM
Sbjct: 635 DLFKPLPGFVVATVKTKPDPKNSGKTLSM 663
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 145/273 (53%), Gaps = 10/273 (3%)
Query: 12 KKAKELKKIAG---HVHTWNSLFLGTNAIAEAMAETYNATKAEVLTG--SGAATRLAMGE 66
KK +ELK+ A +WNSL++ +A+ ++A+ K+E++ S +A + A+ E
Sbjct: 425 KKQRELKRKANSAQQTFSWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAE 484
Query: 67 TEIVEKTRAFLEENGVQLDAFNQVVEA-RSKRIILVKNLPYRTLPTDLKALFEPFGDLGR 125
++ R F E GV L F Q+ + R R+ILVKN PY T ++ LF PFG L R
Sbjct: 485 ASVIGDVRKFFETRGVDLTKFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQR 544
Query: 126 VLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKE 185
+L+PP G +++F A+AAF+ ++Y +FK+ +YLE P F + + E E
Sbjct: 545 LLLPPSGTIAILQFRDVPAARAAFSKISYKRFKDGIIYLEKGPSDCFTRDAQGDELVESE 604
Query: 186 KNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEER----EPEPDTTLYIKNLNFNSTE 241
+ + +E K + A+ Q +P +++ +D++ + P +++IKNLNF++T
Sbjct: 605 TDIQKATAKEAKISGADLLEAQSLPAADKDDHDDDDDDDDVQAGPTVSIFIKNLNFSTTS 664
Query: 242 DSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+ FK V K DPK PG+ LSM
Sbjct: 665 QQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSM 697
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSL 152
I+VKNLP+ D+ LF FG L V VP G VEFL +A+ A + L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGF-AFVEFLLPKEAENAMDQL 812
Query: 153 AYTKF---KEVPLYLEWAPEGVFAEAKEKSKGKEKEKN 187
+ V ++E PE V + ++ ++ +K+ N
Sbjct: 813 QGVHLLGRRLVMEFVEQDPEDVEQQIEKMTRKVKKQVN 850
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 148/280 (52%), Gaps = 19/280 (6%)
Query: 2 GIDEGSSYKTKKAKELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLT------G 55
G + ++ K +A++ K+ A W+ L++ ++A+A ++A+ K+++L
Sbjct: 400 GSKKTATLKQARAEQKKQDATKDFNWSMLYMSSDAVASSIADRLGVNKSDILNPGANGGA 459
Query: 56 SGAATRLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKA 115
AA RLA+ ET I+++T+ FL + G+ +DAF RS ILVKN+PY T +++
Sbjct: 460 DNAAVRLALAETRIIQETKEFLAQQGINVDAFQGAKGPRSDTTILVKNIPYGTSAEEVEK 519
Query: 116 LFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEA 175
LF G++ +VL+PP G +VE N+A+ AF ++AY +FK LYLE AP G+ +
Sbjct: 520 LFGEHGEVDKVLIPPSGTIAVVEMPVVNEARLAFRAIAYKRFKGGILYLEKAPVGLLTQH 579
Query: 176 KEKSKGKEKEKNEEGEGEEEKKEN-TAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKN 234
K G++ K G+ N + + D G +E V+ TLY+KN
Sbjct: 580 K---VGEKVVKQAPIVGKSIDSSNPSVDLDGPAGAGAGDEAVD---------GATLYVKN 627
Query: 235 LNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
L+F++T++ + F A + K DP+ PG LSM
Sbjct: 628 LSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSM 667
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-PYGIT----GLVEFLQKNQAKAAFNSLA 153
IL+KNLP+ D++ LF G L V +P + T G VE+ +A++A +L
Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALK 780
Query: 154 YTKFKEVPLYLEWA 167
+T L L+W+
Sbjct: 781 HTHLLGRHLVLQWS 794
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 140/272 (51%), Gaps = 36/272 (13%)
Query: 12 KKAKELKK---IAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TGSGAATRLAMGE 66
KK + L+K A WNSLF+ +A+ AMAE +KAE+L T + AA + A+ E
Sbjct: 401 KKQQLLRKKAEAASSTFNWNSLFMSQDAVNTAMAERLGVSKAELLDPTDASAAVKQAVAE 460
Query: 67 TEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 126
T ++++ + + NGV ++AF + R ILVKN+ T+ +L+ LFE G + RV
Sbjct: 461 TTVIQEAKQYFAANGVNIEAFK--TQQRGDTTILVKNIKNTTI-EELRTLFEEHGTVLRV 517
Query: 127 LVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEK 186
L+PP G +V+F Q Q + AF AY++FK+ L+LE P+G+F +
Sbjct: 518 LMPPSGTIAIVQFAQPVQCRTAFARKAYSRFKDSVLFLEKGPKGLFTD------------ 565
Query: 187 NEEGEGEEEKKENTAEEDNQQ--GV--PEVEENVEEDEEREPEPDTTLYIKNLNFNSTED 242
N A + + GV P V + +E D+ E ++L+++NLNF++T
Sbjct: 566 ------------NVAVPTDARPAGVQKPSVADLLERDDAEEQLETSSLFVRNLNFSTTSQ 613
Query: 243 SIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+ FK V K DPK PGQ LSM
Sbjct: 614 GLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSM 645
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 259
E + L+++NL++ TED +R HF K G + V V
Sbjct: 305 EKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHV 339
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSL 152
++VKNLP+ +++ LF +G L + +P G EF +A AFNSL
Sbjct: 706 LVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGF-AFAEFSTAKEALNAFNSL 764
Query: 153 AYTKFKEVPLYLEWA------PEGVFAEAKEKSKGK 182
T L +++A PE A ++K++ +
Sbjct: 765 KDTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQ 800
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 138/272 (50%), Gaps = 11/272 (4%)
Query: 12 KKAKELKKIAG---HVHTWNSLFLGTNAIAEAMAETYNATKAEVLTG--SGAATRLAMGE 66
KK KELK+ A +WNSL++ +A+ ++A K++++ S +A + A+ E
Sbjct: 440 KKQKELKRKAAASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAE 499
Query: 67 TEIVEKTRAFLEENGVQLDAFNQV--VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG 124
++ R + E GV L F+Q+ R ++ILVKN P+ T +L +F P+G L
Sbjct: 500 AHVIGDVRKYFESKGVDLTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLE 559
Query: 125 RVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSK--GK 182
R+L+PP G +V+F A+AAF L+Y +FK+ +YLE P+ F + E
Sbjct: 560 RLLMPPAGTIAIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGPKDCFTKPAEADDLINN 619
Query: 183 EKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTED 242
K EE E + N E N+ V E N DE+ P +++IKNLNF++T
Sbjct: 620 TSAKEEENPVEVKPSSNDLMEANKD-VTEGSSNA-HDEDVIDGPTVSIFIKNLNFSTTNQ 677
Query: 243 SIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
++ FK V K DPK G+ LSM
Sbjct: 678 NLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSM 709
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSL 152
I+VKNLP+ D+ LF FG L V VP G VEFL +A+ A + L
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGF-AFVEFLLPKEAENAMDQL 823
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 16/250 (6%)
Query: 27 WNSLFLGTNAIAEAMAETYNATKAEVLTG-SG-AATRLAMGETEIVEKTRAFLEENGVQL 84
W SL++ ++A+A ++A+ +K+E+L SG +A +LA+ ET ++E+T+ + EE G+ L
Sbjct: 346 WASLYMNSDAVAASVADRMGISKSELLNADSGNSAVKLALAETTVIEETKKYFEEAGIVL 405
Query: 85 DAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ 144
++ V RS+ ILVKN+PY T L LF P G L RVL+PP G G+VEF
Sbjct: 406 ESLQPRV-PRSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMD 464
Query: 145 AKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEED 204
A AF +LAY + LYLE P G+F K+E G E+
Sbjct: 465 AGRAFKALAYRRLGNAVLYLEKGPVGMF-------------KSETAPGVGPISTEQKREE 511
Query: 205 NQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264
+ + E E++ E + E +TL++K LNF +T ++ + V K D
Sbjct: 512 EAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPD 571
Query: 265 PKSPGQFLSM 274
PK PG+ LSM
Sbjct: 572 PKRPGEKLSM 581
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI---TG--------LVEFLQKNQAKA 147
+LVKNLP+ D++ LF +G L + +P + TG +EF +A
Sbjct: 642 VLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAAR 701
Query: 148 AFNSLAYTKFKEVPLYLEWAPEGVFAEAK---EKSKGKEKEKNEEGEGEEEKKE-NTAEE 203
A +L +T L L+WA EG + K EK KG+ + + G+ + K + +E
Sbjct: 702 AMEALKHTHLLGRHLVLQWANEGEEVDIKGLREKVKGEVRGMEDGGDRKRRKLDFKGGKE 761
Query: 204 DNQQGV 209
D G+
Sbjct: 762 DEMDGL 767
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 16/250 (6%)
Query: 27 WNSLFLGTNAIAEAMAETYNATKAEVLTG-SG-AATRLAMGETEIVEKTRAFLEENGVQL 84
W SL++ ++A+A ++A+ +K+E+L SG +A +LA+ ET ++E+T+ + EE G+ L
Sbjct: 346 WASLYMNSDAVAASVADRMGISKSELLNADSGNSAVKLALAETTVIEETKKYFEEAGIVL 405
Query: 85 DAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ 144
++ V RS+ ILVKN+PY T L LF P G L RVL+PP G G+VEF
Sbjct: 406 ESLQPRV-PRSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMD 464
Query: 145 AKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEED 204
A AF +LAY + LYLE P G+F K+E G E+
Sbjct: 465 AGRAFKALAYRRLGNAVLYLEKGPVGMF-------------KSETAPGVGPISTEQKREE 511
Query: 205 NQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264
+ + E E++ E + E +TL++K LNF +T ++ + V K D
Sbjct: 512 EAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPD 571
Query: 265 PKSPGQFLSM 274
PK PG+ LSM
Sbjct: 572 PKRPGEKLSM 581
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI---TG--------LVEFLQKNQAKA 147
+LVKNLP+ D++ LF +G L + +P + TG +EF +A
Sbjct: 642 VLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAAR 701
Query: 148 AFNSLAYTKFKEVPLYLEWAPEGVFAEAK---EKSKGKEKEKNEEGEGEEEKKE-NTAEE 203
A +L +T L L+WA EG + K EK KG+ + + G+ + K + +E
Sbjct: 702 AMEALKHTHLLGRHLVLQWANEGEEVDIKGLREKVKGEVRGMEDGGDRKRRKLDFKGGKE 761
Query: 204 DNQQGV 209
D G+
Sbjct: 762 DEMDGL 767
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 138/277 (49%), Gaps = 28/277 (10%)
Query: 12 KKAKELKK---IAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLT--GSGAATRLAMGE 66
KK +ELK+ A +WNSLF+ +A+ ++A K++++ SG+A + A+ E
Sbjct: 396 KKQRELKRKATAAQQTFSWNSLFMNQDAVLSSVAAKLGMEKSQLIDPENSGSAVKQALAE 455
Query: 67 TEIVEKTRAFLEENGVQLDAFNQV--VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG 124
++ R + E GV L F + V R RIILVKN P+ T +L LF PFG +
Sbjct: 456 AHVIGDVRKYFEARGVDLTQFEKFKKVTERDDRIILVKNFPHGTTREELAELFLPFGKIE 515
Query: 125 RVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEK 184
R+L+PP G ++++ A+ AF L+Y +FKE LYLE P+ F+
Sbjct: 516 RLLMPPSGTIAIIQYRDVPAARGAFTKLSYKRFKEAILYLEKGPKDCFS----------- 564
Query: 185 EKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE-------PDTTLYIKNLNF 237
E G+E + + A ED ++ VE+ ++ D + P ++++KNLNF
Sbjct: 565 ---REPRGDELLEGDAAPEDVKEIKKSVEDVMDADSKTPSSEATAIDGPTVSIFVKNLNF 621
Query: 238 NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
++T + FK V K DPK+ + LSM
Sbjct: 622 STTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSM 658
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 101 VKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSLAY 154
VKNLP+ D+ LF FG L V VP G VEFL ++A+ A + L
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGF-AFVEFLLPSEAENAMDQLQG 774
Query: 155 TKFKEVPLYLEWA 167
L +++A
Sbjct: 775 VHLLGRRLVMQYA 787
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 18/268 (6%)
Query: 12 KKAKELKK---IAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TGSGAATRLAMGE 66
KK +ELK+ A +WNSL++ +A+ E++A++ K+E++ S AA + A+ E
Sbjct: 397 KKQQELKRKAEAAKQQFSWNSLYMNQDAVMESVAKSMGIKKSELIDPDSSDAAVKQALAE 456
Query: 67 TEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 126
++ +++ E+ GV L +F+ + R R+ILVKN P+ T ++ +F +GDL +V
Sbjct: 457 ATVIGDVKSYFEKMGVDLASFDN--KDRDDRVILVKNFPFGTTQPEIAEMFSEYGDLYKV 514
Query: 127 LVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEK 186
++PP G +V F A+AAF LA+ +FK LYLE P+ + EK
Sbjct: 515 MMPPAGTIAIVIFKHIPDARAAFAKLAFRRFKTSILYLEKGPKNLLP----------NEK 564
Query: 187 NEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246
E E E K++ +++ +V + D ER T++++KNLNF +T +
Sbjct: 565 MESDEVEHVKQDKIVTIEDKLSASDVMDTGSND-ERPATASTSVFVKNLNFKTTSRVLTD 623
Query: 247 HFKKCGPIASVTVARKKDPKSPGQFLSM 274
FK V K D K+ G+FLSM
Sbjct: 624 AFKALDGFLVAQVKMKPDSKNKGKFLSM 651
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-----GLVEFLQKNQAKAAFNSLA 153
IL+KNLP+ D++ LF FG L V VP + E++ +A+ A ++L
Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQ 764
Query: 154 YTKFKEVPLYLEWA 167
T L L++A
Sbjct: 765 GTHLLGRRLVLQYA 778
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 7/253 (2%)
Query: 26 TWNSLFLGTNAIAEAMAETYNATKAEVLT--GSGAATRLAMGETEIVEKTRAFLEENGVQ 83
+WNSL++ +A+ ++A KA+++ S +A + A+ E ++ R + E GV
Sbjct: 437 SWNSLYMNQDAVLGSVAAKLGVQKADLIDPENSNSAVKQALAEAHVIGDVRKYFETKGVD 496
Query: 84 LDAFNQVV--EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ 141
L F+ + R R+ILVKN P+ T +L LF PFG L R+L+PP G +V+F
Sbjct: 497 LTKFSNLKSPSQRDDRVILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRD 556
Query: 142 KNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTA 201
++AF+ LA+ +FK +YLE P+ F +A E ++E + +E ++A
Sbjct: 557 IASGRSAFSKLAFKRFKGTVIYLEKGPKDCFTKAASNEDAME---HDEEKSAKEAGPSSA 613
Query: 202 EEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261
+ + E+ +EDE+ P +++IKNLNF +T + FK V
Sbjct: 614 DLLESVSSKKTEDKEDEDEQVVDGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKT 673
Query: 262 KKDPKSPGQFLSM 274
K DPK + LSM
Sbjct: 674 KPDPKQKNKVLSM 686
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSL 152
I+VKNLP+ D+ LF FG L V VP G VEF+ +A+ A + L
Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGF-AFVEFVLPKEAENAMDQL 798
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 41/206 (19%)
Query: 99 ILVKNLPYRTL-PTDLKALFEPFGDLGRVLVPPYG---ITGLVEFLQKNQ--AKAAFNSL 152
++++NLP+ P L+ F FG + + +P G + G K++ A+ A NSL
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 153 AYTKFKEVPLYLEWA-PEGVF-------AEAKEKSK---------------GKEKEKNEE 189
T+ P+ ++WA + F A ++E++K + E EE
Sbjct: 169 NGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEE 228
Query: 190 GEGEEEKKENTAE-EDNQQGVPEVEE--------NVEEDEEREPEP-DTTLYIKNLNFNS 239
+G E KE E E+ V +VE+ N E R+ E + T++++NL F
Sbjct: 229 VDGHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFEC 288
Query: 240 TEDSIRRHFKKCGPIASVTVARKKDP 265
TE + HF++ GP+A + KDP
Sbjct: 289 TEQELYNHFRQFGPLAYAKLV--KDP 312
>sp|A7TQR2|RRT5_VANPO Regulator of rDNA transcription protein 5 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=RRT5 PE=3
SV=1
Length = 333
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL------------VEFLQKNQAK 146
I + NL Y + +L + + L VLVP + + G +F +A+
Sbjct: 33 IYISNLDYSSTEDELIEYLKDYKPLS-VLVPSHTVRGFRSNHVKPLGIAYADFETPEKAR 91
Query: 147 AAFNSLAYTKFK----EVPLYLEWAPEGVFAEA---KEKSKGKEKEKNEEGEGEEEKKEN 199
A +L T FK +V LY+ ++PE V A + SK + +K + E ++
Sbjct: 92 EAVEALNETNFKNRNLKVKLYVPFSPENVCKPAPKPRRLSKLRRSKKPADEENNAASQDP 151
Query: 200 TAEEDNQQG-VPEVEENVEED-EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 253
T E ++G E EN + ++ +P D T+Y L N+T+ +R HFK P
Sbjct: 152 TVEATQERGQASEDPENAANNAKQAKPTSDDTVYCGYLPKNTTDADLREHFKDYNP 207
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 206 QQGVPEVEENVEEDEEREPEPD----TTLYIKNLNFNSTEDSIRRHFKKCGPIA 255
Q PE E + + ERE D T +YI NL+++STED + + K P++
Sbjct: 5 QSNNPEPIEVSDNNPERESTADALLTTRIYISNLDYSSTEDELIEYLKDYKPLS 58
>sp|B3LYP1|NCBP2_DROAN Nuclear cap-binding protein subunit 2 OS=Drosophila ananassae
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
+ER TTLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 22 QERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFC 74
>sp|B4JUT1|NCBP2_DROGR Nuclear cap-binding protein subunit 2 OS=Drosophila grimshawi
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
+ER TTLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 22 QERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFC 74
>sp|B4LZ88|NCB2B_DROVI Nuclear cap-binding protein subunit 2B OS=Drosophila virilis
GN=Cbp20-B PE=3 SV=1
Length = 154
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
+ER TTLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 22 QERSLRDSTTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFC 74
>sp|B0W939|NCBP2_CULQU Nuclear cap-binding protein subunit 2 OS=Culex quinquefasciatus
GN=Cbp20 PE=3 SV=1
Length = 160
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 217 EEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER +TLYI NL+F +TE+ I F +CG I + + K K+P F
Sbjct: 23 RHEQERLLRNSSTLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFC 78
>sp|B4QV17|NCBP2_DROSI Nuclear cap-binding protein subunit 2 OS=Drosophila simulans
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFC 74
>sp|B4IBA4|NCBP2_DROSE Nuclear cap-binding protein subunit 2 OS=Drosophila sechellia
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFC 74
>sp|Q9V3L6|NCBP2_DROME Nuclear cap-binding protein subunit 2 OS=Drosophila melanogaster
GN=Cbp20 PE=1 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFC 74
>sp|B4PL68|NCBP2_DROYA Nuclear cap-binding protein subunit 2 OS=Drosophila yakuba GN=Cbp20
PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFC 74
>sp|B4KCD5|NCBP2_DROMO Nuclear cap-binding protein subunit 2 OS=Drosophila mojavensis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
+ER +TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 22 QERSLRDSSTLYVGNLSFYTTEEQIHELFSRCGDVRIIVMGLDKYKKTPCGFC 74
>sp|Q293V6|NCBP2_DROPS Nuclear cap-binding protein subunit 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Cbp20 PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER + TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFC 74
>sp|B4GLK8|NCBP2_DROPE Nuclear cap-binding protein subunit 2 OS=Drosophila persimilis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER + TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFC 74
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
+E+ + +TLY+ NL+F +TE+ I+ F KCG + + + K K+P F
Sbjct: 35 QEKSLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFC 87
>sp|B4NB54|NCBP2_DROWI Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
++ER + TLY+ NL+F +TE+ I F +CG + + + K K+P F
Sbjct: 21 EQERSLKESCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFC 74
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260
P L++ NL+F+ T+D +R+HF+ CG I + +A
Sbjct: 237 PSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMA 271
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269
+ +Y+KN+N TE+ +R+HF +CG I S + + KS G
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG 345
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 52/168 (30%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT---GLVEFLQKNQAKAAFNSLA 153
+ VKNLP L+ +F+ FG++ V G + G V+F Q++ A AA +L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 154 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVE 213
T + +Y+ G F + ++ K +EK N
Sbjct: 174 STIVADKEIYV-----GKFMKKTDRVKPEEKYTN-------------------------- 202
Query: 214 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261
LY+KNL+ + +ED +R F + G I S+ +A+
Sbjct: 203 ----------------LYMKNLDADVSEDLLREKFAEFGKIVSLAIAK 234
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
+EPE L+I L+F +T+DS+R HF+K G + V R DP++
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQT 72
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
+EPE L+I L+F +T+DS+R HF+K G + V R DP++
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQT 72
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
+EPE L+I L+F +T+DS+R HF+K G + V R DP++
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQT 72
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 218 EDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
E++ EPE L+I L++ +T++S+++HF++ G I V V KDPK+
Sbjct: 7 ENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVM--KDPKT 54
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
+EE++ +++I N++FNST + I HFK CG I T+ + K K F
Sbjct: 46 EEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNF 98
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 215 NVEEDEE-REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
N ++ EE EPE L+I L++ +T+D ++ HF+K G I V V KDPK+
Sbjct: 10 NYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVM--KDPKT 61
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 191 EGEEEKKENTAEEDNQQ---GVPEVEENVEEDEEREP--EPDTTLYIKNLNFNSTEDSIR 245
+GE K +N E NQ G +E N + EE P D ++I LN+ +T+DS+R
Sbjct: 123 DGENSKNDNYNE--NQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLR 180
Query: 246 RHFKKCGPIASVTVAR 261
+F++ G + TV R
Sbjct: 181 DYFEQFGEVLDCTVMR 196
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
+EE++ +++I N++FNST + + HFK CG I T+ + K K F
Sbjct: 52 EEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNF 104
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 191 EGEEEKKENTAEEDNQQG--VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248
+ E EK+ N + G + +EE +E D ++Y+ N+++ +T + + HF
Sbjct: 131 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADAR-------SIYVGNVDYGATAEELEAHF 183
Query: 249 KKCGPIASVTVARKKDPKSPGQF 271
CG + VT+ K P F
Sbjct: 184 HGCGSVNRVTILCDKYTGHPKGF 206
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 191 EGEEEKKENTAEEDNQQG--VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248
+ E EK+ N + G + VEE +E D ++Y+ N+++ +T + + HF
Sbjct: 131 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADAR-------SIYVGNVDYGATAEELEAHF 183
Query: 249 KKCGPIASVTVARKKDPKSPGQF 271
CG + VT+ K P F
Sbjct: 184 HGCGSVNRVTILCDKFTGHPKGF 206
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261
T +Y+KN++ ++TE+ R F+K G I S T+AR
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLAR 269
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 39/175 (22%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFNSL 152
+ VKN+ T + + LFE FG++ + +G V F + A AA +L
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 153 AYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEV 212
FK LY+ A +K +E+E ++ E +K + QGV
Sbjct: 298 NDKDFKGQKLYVGRA---------QKKHEREEELRKQYEAARIEKASK-----YQGV--- 340
Query: 213 EENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
LYIKNL+ + ++ +R F G I S V R P+S
Sbjct: 341 ----------------NLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPES 379
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 191 EGEEEKKENTAEEDNQQG--VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248
+ E EK+ N + G + VEE +E D ++Y+ N+++ +T + + HF
Sbjct: 130 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADAR-------SIYVGNVDYGATAEELEAHF 182
Query: 249 KKCGPIASVTVARKKDPKSPGQF 271
CG + VT+ K P F
Sbjct: 183 HGCGSVNRVTILCDKFTGHPKGF 205
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 191 EGEEEKKENTAEEDNQQG--VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248
+ E EK+ N + G + +EE +E D ++Y+ N+++ +T + + HF
Sbjct: 140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADAR-------SIYVGNVDYGATAEELEAHF 192
Query: 249 KKCGPIASVTVARKKDPKSPGQF 271
CG + VT+ K P F
Sbjct: 193 HGCGSVNRVTILCDKFSGHPKGF 215
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 191 EGEEEKKENTAEEDNQQG--VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248
+ E EK+ N + G + +EE +E D ++Y+ N+++ +T + + HF
Sbjct: 140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADAR-------SIYVGNVDYGATAEELEAHF 192
Query: 249 KKCGPIASVTVARKKDPKSPGQF 271
CG + VT+ K P F
Sbjct: 193 HGCGSVNRVTILCDKFSGHPKGF 215
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG----QFLS 273
TL++ NL+FN +D ++ F++ G + SV +A +D S G QF S
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFAS 360
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 207 QGVPEVEENV--EEDEEREPEPDT-TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263
+G P+V + + EE + E D+ ++++ N+ + T + I HFK CG I +T+ +
Sbjct: 40 EGTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDR 99
Query: 264 DPKSP 268
+ +P
Sbjct: 100 NTGTP 104
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263
TL++ +N+++TE +RR F+ GPI + + K
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNK 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,546,851
Number of Sequences: 539616
Number of extensions: 4607752
Number of successful extensions: 63990
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 829
Number of HSP's that attempted gapping in prelim test: 39314
Number of HSP's gapped (non-prelim): 15608
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)