Query psy3343
Match_columns 274
No_of_seqs 322 out of 2551
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 22:33:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0110|consensus 100.0 1.7E-35 3.6E-40 276.4 13.7 256 7-274 296-560 (725)
2 TIGR01659 sex-lethal sex-letha 99.9 1.5E-23 3.2E-28 190.0 14.9 121 93-264 104-230 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.5E-22 9.7E-27 181.5 15.8 119 95-264 2-126 (352)
4 KOG0127|consensus 99.9 6.1E-22 1.3E-26 180.9 14.8 171 96-266 117-331 (678)
5 TIGR01645 half-pint poly-U bin 99.9 1.2E-21 2.6E-26 187.0 16.5 132 94-265 105-242 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.3E-21 1.1E-25 174.5 16.0 234 28-269 4-312 (352)
7 TIGR01628 PABP-1234 polyadenyl 99.9 3.4E-21 7.3E-26 186.3 14.9 124 97-269 1-130 (562)
8 TIGR01628 PABP-1234 polyadenyl 99.9 6.3E-21 1.4E-25 184.4 13.8 187 29-269 2-220 (562)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.5E-20 3.3E-25 178.4 16.0 130 96-264 2-133 (481)
10 TIGR01622 SF-CC1 splicing fact 99.8 6.6E-20 1.4E-24 173.0 16.5 133 93-265 86-224 (457)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2E-19 4.3E-24 170.7 17.7 157 94-265 273-434 (481)
12 KOG0148|consensus 99.8 9.8E-20 2.1E-24 154.0 11.3 134 96-264 62-201 (321)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1E-18 2.2E-23 167.0 16.2 150 92-264 171-332 (509)
14 KOG0131|consensus 99.8 3E-19 6.5E-24 143.1 8.6 123 94-266 7-136 (203)
15 KOG0145|consensus 99.8 5.3E-19 1.2E-23 148.8 9.8 120 93-263 38-163 (360)
16 KOG0123|consensus 99.8 1E-18 2.2E-23 159.4 11.5 188 28-270 2-210 (369)
17 KOG0117|consensus 99.8 2.7E-18 5.9E-23 153.9 11.7 169 94-262 81-294 (506)
18 KOG0127|consensus 99.8 4.2E-18 9.2E-23 155.9 12.0 150 95-269 4-159 (678)
19 KOG0109|consensus 99.8 1.4E-18 3.1E-23 148.3 7.9 111 97-262 3-113 (346)
20 TIGR01648 hnRNP-R-Q heterogene 99.7 2.4E-17 5.2E-22 157.3 15.3 110 94-260 56-172 (578)
21 KOG0144|consensus 99.7 2.2E-18 4.8E-23 153.9 7.7 126 94-269 32-166 (510)
22 TIGR01648 hnRNP-R-Q heterogene 99.7 3.6E-17 7.9E-22 156.1 13.1 181 28-262 59-270 (578)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.4E-16 5.2E-21 150.7 16.6 146 95-263 294-455 (509)
24 TIGR01622 SF-CC1 splicing fact 99.7 4.7E-16 1E-20 146.8 16.0 134 27-168 89-264 (457)
25 KOG0123|consensus 99.7 1.6E-16 3.4E-21 145.1 11.9 110 97-265 2-114 (369)
26 KOG0124|consensus 99.7 4.5E-17 9.7E-22 143.0 7.2 130 97-266 114-249 (544)
27 KOG0110|consensus 99.7 1.5E-16 3.2E-21 150.0 10.3 124 97-262 516-648 (725)
28 KOG0145|consensus 99.7 7E-16 1.5E-20 130.1 10.6 197 62-265 81-316 (360)
29 KOG0105|consensus 99.7 2.2E-15 4.8E-20 121.3 12.7 147 93-264 3-152 (241)
30 PLN03134 glycine-rich RNA-bind 99.6 1.5E-15 3.2E-20 121.5 10.8 78 93-170 31-114 (144)
31 PF00076 RRM_1: RNA recognitio 99.6 1.3E-14 2.8E-19 100.9 7.8 65 99-163 1-70 (70)
32 KOG0121|consensus 99.6 5.7E-15 1.2E-19 112.1 6.3 77 92-168 32-114 (153)
33 KOG4206|consensus 99.5 1.1E-13 2.3E-18 115.1 13.2 160 96-262 9-181 (221)
34 PLN03120 nucleic acid binding 99.5 1E-13 2.2E-18 119.1 10.1 73 96-169 4-79 (260)
35 COG0724 RNA-binding proteins ( 99.5 5.8E-13 1.3E-17 115.2 13.8 143 96-265 115-263 (306)
36 KOG0148|consensus 99.5 1.4E-13 3E-18 116.9 9.3 135 36-170 78-238 (321)
37 TIGR01659 sex-lethal sex-letha 99.5 9.3E-14 2E-18 126.2 8.3 136 27-170 107-275 (346)
38 KOG0107|consensus 99.5 1.1E-13 2.3E-18 110.7 7.3 75 95-169 9-84 (195)
39 PF14259 RRM_6: RNA recognitio 99.5 3.4E-13 7.5E-18 94.1 8.7 65 99-163 1-70 (70)
40 KOG0114|consensus 99.5 3.7E-13 8E-18 98.7 8.6 74 95-168 17-93 (124)
41 KOG4205|consensus 99.4 3.7E-13 8.1E-18 119.4 8.9 126 95-266 5-136 (311)
42 KOG0122|consensus 99.4 7.1E-13 1.5E-17 111.1 8.5 76 95-170 188-269 (270)
43 PLN03121 nucleic acid binding 99.4 1.2E-12 2.6E-17 110.9 9.9 73 95-168 4-79 (243)
44 PLN03213 repressor of silencin 99.4 1.4E-12 3E-17 118.9 9.1 77 94-170 8-88 (759)
45 smart00362 RRM_2 RNA recogniti 99.4 3E-12 6.5E-17 88.2 8.7 67 98-164 1-71 (72)
46 PF13893 RRM_5: RNA recognitio 99.4 4.3E-12 9.2E-17 84.8 8.5 55 113-167 1-56 (56)
47 KOG0125|consensus 99.4 1.2E-12 2.6E-17 113.9 7.3 79 93-171 93-175 (376)
48 TIGR01645 half-pint poly-U bin 99.4 2.9E-12 6.3E-17 123.0 9.8 75 95-169 203-283 (612)
49 KOG1457|consensus 99.3 1.8E-11 3.9E-16 101.5 12.2 74 97-170 35-118 (284)
50 KOG4207|consensus 99.3 4E-12 8.7E-17 104.2 5.3 75 96-170 13-93 (256)
51 KOG0144|consensus 99.3 2.6E-12 5.6E-17 115.4 4.3 118 30-170 79-206 (510)
52 cd00590 RRM RRM (RNA recogniti 99.3 3.4E-11 7.3E-16 83.3 9.1 69 98-166 1-74 (74)
53 KOG0147|consensus 99.3 1.7E-12 3.7E-17 119.8 2.9 140 92-269 175-321 (549)
54 KOG0126|consensus 99.3 2.5E-12 5.4E-17 103.5 3.3 80 89-168 28-113 (219)
55 KOG0113|consensus 99.3 1.7E-11 3.7E-16 105.6 8.3 76 93-168 98-179 (335)
56 KOG0117|consensus 99.3 1.3E-11 2.9E-16 111.3 7.5 72 97-170 260-331 (506)
57 KOG0149|consensus 99.2 1.3E-11 2.8E-16 103.2 6.0 74 95-169 11-90 (247)
58 KOG0146|consensus 99.2 6.7E-11 1.4E-15 100.6 9.1 74 95-168 18-99 (371)
59 smart00360 RRM RNA recognition 99.2 7.7E-11 1.7E-15 80.7 7.2 64 101-164 1-70 (71)
60 KOG0130|consensus 99.2 3.7E-11 7.9E-16 92.3 5.8 76 95-170 71-152 (170)
61 KOG0111|consensus 99.2 3.3E-11 7.1E-16 99.8 4.5 76 95-170 9-90 (298)
62 KOG1190|consensus 99.1 7.9E-10 1.7E-14 99.0 13.2 152 96-264 297-451 (492)
63 KOG4212|consensus 99.1 1.1E-09 2.4E-14 98.9 13.2 173 95-269 43-257 (608)
64 KOG0106|consensus 99.1 1.2E-10 2.6E-15 97.7 6.0 129 97-258 2-130 (216)
65 KOG0108|consensus 99.1 3.4E-10 7.3E-15 104.9 7.5 74 97-170 19-98 (435)
66 KOG1190|consensus 99.1 2.9E-10 6.2E-15 101.8 6.7 159 93-265 25-188 (492)
67 KOG4211|consensus 99.0 2.8E-09 6E-14 97.7 12.6 135 95-271 9-148 (510)
68 KOG0109|consensus 99.0 2.8E-10 6E-15 97.9 5.4 77 92-170 74-150 (346)
69 KOG0147|consensus 99.0 2.6E-10 5.7E-15 105.5 5.5 73 98-170 280-358 (549)
70 KOG0132|consensus 99.0 1.1E-09 2.5E-14 104.8 7.2 75 96-170 421-495 (894)
71 KOG0153|consensus 99.0 2.9E-09 6.4E-14 93.7 9.1 80 90-169 222-302 (377)
72 KOG0415|consensus 98.9 1.5E-09 3.3E-14 95.7 5.9 79 91-169 234-318 (479)
73 KOG1548|consensus 98.9 9E-09 1.9E-13 90.6 10.6 155 93-260 131-309 (382)
74 smart00361 RRM_1 RNA recogniti 98.9 7.7E-09 1.7E-13 72.3 7.3 55 110-164 2-69 (70)
75 KOG4208|consensus 98.8 1.7E-08 3.8E-13 83.1 7.4 79 92-170 45-130 (214)
76 KOG4454|consensus 98.8 1.8E-09 3.8E-14 89.6 1.0 72 96-167 9-84 (267)
77 KOG0146|consensus 98.7 2.1E-08 4.5E-13 85.5 4.5 77 92-168 281-363 (371)
78 KOG4661|consensus 98.7 3.6E-08 7.8E-13 91.8 6.1 76 95-170 404-485 (940)
79 KOG0131|consensus 98.6 4.5E-08 9.7E-13 79.2 5.1 77 94-170 94-177 (203)
80 KOG0129|consensus 98.6 7.8E-07 1.7E-11 82.3 13.1 139 93-263 256-407 (520)
81 KOG0124|consensus 98.6 1.2E-07 2.5E-12 84.2 7.2 76 93-168 207-288 (544)
82 KOG0151|consensus 98.6 7.9E-08 1.7E-12 91.5 6.5 76 93-168 171-255 (877)
83 KOG4212|consensus 98.5 1.4E-07 3E-12 85.5 6.4 76 92-167 532-608 (608)
84 KOG0116|consensus 98.5 1.7E-07 3.7E-12 86.6 6.1 73 95-168 287-365 (419)
85 KOG4660|consensus 98.5 6.8E-08 1.5E-12 89.9 3.1 71 93-163 72-143 (549)
86 KOG0533|consensus 98.5 4.8E-07 1E-11 77.8 7.8 76 95-170 82-162 (243)
87 PF00076 RRM_1: RNA recognitio 98.5 1.7E-07 3.7E-12 64.6 3.7 36 230-265 1-36 (70)
88 PLN03134 glycine-rich RNA-bind 98.5 3.8E-07 8.2E-12 72.9 6.1 40 225-264 32-71 (144)
89 KOG0128|consensus 98.4 1.4E-08 3.1E-13 98.3 -2.8 110 94-271 665-780 (881)
90 KOG1456|consensus 98.4 1.7E-05 3.7E-10 70.9 14.6 159 92-266 283-446 (494)
91 KOG0121|consensus 98.3 7.9E-07 1.7E-11 68.1 3.8 44 225-268 34-77 (153)
92 PF11608 Limkain-b1: Limkain b 98.3 2.7E-06 5.9E-11 60.5 5.8 70 97-170 3-77 (90)
93 KOG4209|consensus 98.2 2.5E-06 5.5E-11 73.3 6.5 78 92-170 97-180 (231)
94 KOG0120|consensus 98.2 1.1E-06 2.4E-11 82.3 4.6 78 93-170 286-369 (500)
95 PF14259 RRM_6: RNA recognitio 98.2 1.8E-06 3.9E-11 59.8 3.7 38 230-267 1-38 (70)
96 KOG4205|consensus 98.1 4E-06 8.7E-11 74.8 5.1 74 96-170 97-176 (311)
97 PF04059 RRM_2: RNA recognitio 98.1 2.3E-05 5E-10 58.1 8.0 73 97-169 2-86 (97)
98 KOG0114|consensus 98.0 8E-06 1.7E-10 60.4 4.6 41 225-265 16-56 (124)
99 PF08777 RRM_3: RNA binding mo 98.0 1.4E-05 2.9E-10 60.4 6.1 69 97-165 2-75 (105)
100 KOG4676|consensus 98.0 7.6E-06 1.6E-10 73.5 4.9 167 96-264 7-188 (479)
101 smart00362 RRM_2 RNA recogniti 97.9 1.8E-05 3.9E-10 53.7 5.2 35 229-263 1-35 (72)
102 KOG1457|consensus 97.9 9.1E-06 2E-10 68.0 3.7 65 94-158 208-274 (284)
103 KOG0112|consensus 97.9 5.2E-06 1.1E-10 81.3 2.3 116 92-260 368-488 (975)
104 KOG1456|consensus 97.9 8.1E-05 1.8E-09 66.7 9.4 128 91-262 26-157 (494)
105 KOG2193|consensus 97.9 4.2E-06 9.2E-11 75.8 1.3 111 97-260 2-113 (584)
106 KOG0126|consensus 97.8 3.8E-06 8.2E-11 68.1 0.3 40 226-265 34-73 (219)
107 KOG4206|consensus 97.8 6.8E-05 1.5E-09 62.9 7.3 75 93-167 143-219 (221)
108 KOG0120|consensus 97.8 5E-05 1.1E-09 71.4 6.9 149 92-269 171-332 (500)
109 KOG4210|consensus 97.8 3.1E-05 6.7E-10 68.7 5.1 130 94-265 86-223 (285)
110 COG0724 RNA-binding proteins ( 97.7 5.3E-05 1.2E-09 65.1 5.6 43 227-269 115-158 (306)
111 cd00590 RRM RRM (RNA recogniti 97.7 8.4E-05 1.8E-09 50.6 5.2 37 229-265 1-37 (74)
112 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.9E-05 2.1E-09 48.5 4.8 52 97-149 2-53 (53)
113 KOG4211|consensus 97.7 0.00044 9.6E-09 64.1 10.6 73 95-168 102-180 (510)
114 KOG0106|consensus 97.7 3E-05 6.6E-10 65.4 2.9 73 93-167 96-168 (216)
115 KOG0113|consensus 97.6 8.5E-05 1.9E-09 64.7 4.9 45 225-269 99-144 (335)
116 KOG3152|consensus 97.6 3.7E-05 8E-10 65.6 2.3 70 92-161 70-157 (278)
117 KOG0226|consensus 97.5 7.8E-05 1.7E-09 63.6 3.8 75 93-167 187-267 (290)
118 COG5175 MOT2 Transcriptional r 97.5 0.00031 6.7E-09 62.2 6.4 74 96-169 114-202 (480)
119 smart00360 RRM RNA recognition 97.4 0.00022 4.8E-09 47.9 4.3 33 232-264 1-33 (71)
120 KOG0122|consensus 97.3 0.00032 7E-09 59.6 4.5 40 226-265 188-227 (270)
121 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0011 2.4E-08 49.4 6.9 71 95-167 5-89 (100)
122 KOG1365|consensus 97.3 0.00092 2E-08 60.3 7.5 151 96-271 161-327 (508)
123 KOG4307|consensus 97.3 0.00088 1.9E-08 64.5 7.5 72 95-166 866-943 (944)
124 KOG0115|consensus 97.2 0.00074 1.6E-08 57.8 6.0 72 143-272 5-76 (275)
125 KOG1548|consensus 97.2 0.002 4.4E-08 57.4 8.8 77 91-167 260-349 (382)
126 KOG0125|consensus 97.2 0.00058 1.2E-08 60.4 5.0 44 224-267 93-136 (376)
127 KOG4210|consensus 97.0 0.00043 9.3E-09 61.5 2.7 73 97-170 186-264 (285)
128 KOG1365|consensus 97.0 0.006 1.3E-07 55.2 9.7 143 93-271 57-209 (508)
129 KOG0153|consensus 96.9 0.0014 3E-08 58.4 4.6 43 221-263 222-264 (377)
130 KOG0533|consensus 96.8 0.0017 3.7E-08 56.0 4.7 43 227-269 83-125 (243)
131 KOG2314|consensus 96.8 0.0025 5.5E-08 60.1 6.0 70 96-165 58-139 (698)
132 KOG0108|consensus 96.8 0.0014 3E-08 61.3 4.3 38 228-265 19-56 (435)
133 KOG2202|consensus 96.7 0.00067 1.4E-08 58.1 1.5 60 111-170 83-148 (260)
134 KOG4207|consensus 96.6 0.0027 5.8E-08 52.9 4.2 42 226-267 12-53 (256)
135 KOG1855|consensus 96.6 0.0022 4.8E-08 58.6 3.8 62 93-154 228-308 (484)
136 KOG0415|consensus 96.5 0.0027 5.8E-08 56.8 3.9 42 223-264 235-276 (479)
137 KOG0116|consensus 96.4 0.0034 7.3E-08 58.5 4.1 37 227-263 288-324 (419)
138 KOG1995|consensus 96.4 0.0031 6.8E-08 56.5 3.5 78 93-170 63-154 (351)
139 KOG0105|consensus 96.4 0.011 2.4E-07 48.5 6.4 75 91-166 110-186 (241)
140 PF08675 RNA_bind: RNA binding 96.3 0.032 7E-07 39.9 7.7 56 96-154 9-64 (87)
141 KOG0112|consensus 96.2 0.0048 1.1E-07 61.2 4.2 75 94-168 453-529 (975)
142 KOG0151|consensus 96.2 0.0052 1.1E-07 59.5 3.9 40 222-261 169-208 (877)
143 KOG0130|consensus 96.0 0.0077 1.7E-07 46.9 3.6 42 223-264 68-109 (170)
144 KOG1996|consensus 95.9 0.019 4E-07 50.3 6.0 73 96-168 281-365 (378)
145 KOG4307|consensus 95.9 0.038 8.3E-07 53.7 8.3 163 95-270 310-478 (944)
146 PF15023 DUF4523: Protein of u 95.8 0.022 4.8E-07 44.8 5.3 75 92-168 82-160 (166)
147 KOG0132|consensus 95.8 0.0084 1.8E-07 58.7 3.4 36 226-261 420-455 (894)
148 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.041 9E-07 45.4 7.0 79 94-172 5-100 (176)
149 PF08777 RRM_3: RNA binding mo 95.7 0.013 2.8E-07 44.2 3.5 36 227-262 1-36 (105)
150 PF08952 DUF1866: Domain of un 95.6 0.062 1.3E-06 42.7 7.2 75 93-170 24-107 (146)
151 KOG2416|consensus 95.0 0.021 4.5E-07 54.4 3.2 77 92-168 440-520 (718)
152 KOG0129|consensus 94.8 0.061 1.3E-06 50.6 5.9 57 95-151 369-432 (520)
153 PF10309 DUF2414: Protein of u 94.7 0.15 3.2E-06 34.5 5.9 54 96-152 5-62 (62)
154 KOG4660|consensus 94.4 0.036 7.8E-07 52.5 3.4 41 224-264 72-112 (549)
155 KOG4285|consensus 94.2 0.17 3.6E-06 44.7 6.8 72 96-169 197-269 (350)
156 KOG4661|consensus 94.2 0.077 1.7E-06 50.5 5.0 46 223-270 401-446 (940)
157 PF04847 Calcipressin: Calcipr 94.2 0.16 3.5E-06 42.2 6.4 61 109-169 8-70 (184)
158 KOG4849|consensus 94.0 0.042 9E-07 49.3 2.7 70 96-165 80-157 (498)
159 KOG2135|consensus 93.5 0.042 9E-07 51.1 1.9 75 95-170 371-446 (526)
160 KOG2591|consensus 93.2 0.14 3.1E-06 48.6 5.0 71 94-165 173-247 (684)
161 KOG1855|consensus 93.1 0.12 2.6E-06 47.6 4.1 40 223-262 227-266 (484)
162 PF07576 BRAP2: BRCA1-associat 93.0 0.78 1.7E-05 34.8 7.9 65 95-159 12-81 (110)
163 KOG0115|consensus 92.1 0.15 3.3E-06 44.0 3.2 69 97-165 32-109 (275)
164 KOG4209|consensus 92.0 0.13 2.7E-06 44.4 2.7 43 224-266 98-140 (231)
165 KOG0128|consensus 91.9 0.066 1.4E-06 53.1 1.0 71 96-166 736-811 (881)
166 KOG0226|consensus 91.8 0.12 2.6E-06 44.6 2.3 127 98-269 98-233 (290)
167 KOG2318|consensus 91.4 1.1 2.5E-05 43.0 8.5 79 92-170 170-308 (650)
168 PF13893 RRM_5: RNA recognitio 90.9 0.26 5.6E-06 32.0 2.8 20 244-263 1-20 (56)
169 KOG4574|consensus 90.7 0.13 2.9E-06 51.1 1.8 73 97-169 299-373 (1007)
170 PF03880 DbpA: DbpA RNA bindin 90.5 1.6 3.4E-05 30.4 6.7 59 106-167 11-74 (74)
171 KOG3152|consensus 90.5 0.36 7.9E-06 41.7 4.0 39 227-265 74-112 (278)
172 KOG2068|consensus 90.3 0.12 2.6E-06 46.3 0.9 72 97-168 78-161 (327)
173 PF11767 SET_assoc: Histone ly 90.1 1.5 3.3E-05 30.0 6.1 55 107-164 11-65 (66)
174 PF14605 Nup35_RRM_2: Nup53/35 88.5 0.71 1.5E-05 30.1 3.4 32 228-260 2-33 (53)
175 PF07292 NID: Nmi/IFP 35 domai 86.8 4.5 9.8E-05 29.3 7.1 81 135-264 1-82 (88)
176 KOG0804|consensus 85.9 1.9 4.2E-05 40.2 5.8 66 94-159 72-142 (493)
177 smart00361 RRM_1 RNA recogniti 85.8 0.95 2.1E-05 31.0 3.1 24 241-264 2-30 (70)
178 KOG4208|consensus 83.0 2.4 5.3E-05 35.5 4.7 47 223-269 45-93 (214)
179 PF08675 RNA_bind: RNA binding 82.9 1.6 3.4E-05 31.4 3.1 27 228-255 10-36 (87)
180 PF04059 RRM_2: RNA recognitio 78.1 5.4 0.00012 29.5 4.7 37 228-264 2-40 (97)
181 KOG2253|consensus 76.8 1.4 3E-05 43.0 1.7 70 93-165 37-106 (668)
182 KOG4676|consensus 70.4 0.74 1.6E-05 42.2 -1.8 61 97-158 152-214 (479)
183 PF10567 Nab6_mRNP_bdg: RNA-re 67.1 7.9 0.00017 34.3 3.9 74 95-168 14-106 (309)
184 KOG2193|consensus 65.5 0.27 5.8E-06 45.4 -5.6 76 95-170 79-157 (584)
185 KOG4019|consensus 65.3 6.2 0.00013 32.5 2.7 75 96-170 10-90 (193)
186 PF14111 DUF4283: Domain of un 62.4 5.1 0.00011 31.5 1.8 105 110-262 35-140 (153)
187 PF10567 Nab6_mRNP_bdg: RNA-re 60.2 7.8 0.00017 34.4 2.6 40 225-264 13-52 (309)
188 KOG4483|consensus 58.6 15 0.00032 34.0 4.2 55 95-150 390-445 (528)
189 COG5175 MOT2 Transcriptional r 58.2 8.9 0.00019 34.7 2.7 39 225-263 112-156 (480)
190 KOG4410|consensus 56.2 12 0.00027 33.0 3.2 48 97-144 331-379 (396)
191 KOG1995|consensus 52.1 11 0.00023 34.3 2.2 32 225-256 64-95 (351)
192 PTZ00338 dimethyladenosine tra 51.6 79 0.0017 28.2 7.7 89 31-119 18-124 (294)
193 PF07292 NID: Nmi/IFP 35 domai 48.9 14 0.00031 26.7 2.1 27 92-118 48-74 (88)
194 KOG4849|consensus 47.5 11 0.00024 34.2 1.6 42 228-269 81-125 (498)
195 PF08544 GHMP_kinases_C: GHMP 45.6 69 0.0015 22.0 5.3 42 111-153 37-80 (85)
196 PF05172 Nup35_RRM: Nup53/35/4 44.3 25 0.00055 26.1 2.9 30 228-258 7-36 (100)
197 KOG2295|consensus 41.9 5 0.00011 38.6 -1.5 67 96-162 231-303 (648)
198 PF15513 DUF4651: Domain of un 41.7 32 0.0007 23.2 2.7 19 242-260 9-27 (62)
199 cd04870 ACT_PSP_1 CT domains f 40.2 31 0.00066 23.6 2.7 53 69-121 12-64 (75)
200 PF11411 DNA_ligase_IV: DNA li 37.7 23 0.0005 21.1 1.4 16 237-252 19-34 (36)
201 PRK00274 ksgA 16S ribosomal RN 36.1 1.9E+02 0.0041 25.3 7.6 93 26-119 19-128 (272)
202 PF02714 DUF221: Domain of unk 35.5 73 0.0016 28.4 5.0 32 135-168 1-32 (325)
203 KOG4008|consensus 32.9 41 0.00088 29.0 2.6 36 225-260 38-73 (261)
204 KOG2891|consensus 32.1 48 0.001 29.3 3.0 35 228-262 150-196 (445)
205 COG0030 KsgA Dimethyladenosine 31.9 2.3E+02 0.0049 24.9 7.3 91 31-123 12-122 (259)
206 PF15023 DUF4523: Protein of u 31.9 74 0.0016 25.4 3.8 37 224-260 83-123 (166)
207 COG5638 Uncharacterized conser 31.5 1.9E+02 0.0042 27.1 6.9 82 90-171 140-299 (622)
208 PF03468 XS: XS domain; Inter 30.8 53 0.0011 25.0 2.8 48 97-144 9-68 (116)
209 KOG4365|consensus 30.6 7.7 0.00017 36.3 -2.1 72 97-169 4-81 (572)
210 PF12116 SpoIIID: Stage III sp 25.8 46 0.00099 23.7 1.5 46 32-79 16-61 (82)
211 PF03439 Spt5-NGN: Early trans 25.0 1.4E+02 0.003 21.1 4.0 34 122-155 33-67 (84)
212 KOG0156|consensus 23.1 1.2E+02 0.0026 29.2 4.3 59 100-162 36-97 (489)
213 PF08299 Bac_DnaA_C: Bacterial 22.9 50 0.0011 22.5 1.3 21 34-54 2-22 (70)
214 COG0030 KsgA Dimethyladenosine 22.5 1.2E+02 0.0026 26.7 3.8 34 228-261 96-129 (259)
215 TIGR02675 tape_meas_nterm tape 22.4 38 0.00083 23.5 0.6 28 26-53 35-62 (75)
216 KOG4454|consensus 21.2 24 0.00052 30.1 -0.7 62 96-157 80-150 (267)
217 KOG1295|consensus 20.1 1.6E+02 0.0034 27.3 4.1 62 96-157 7-77 (376)
No 1
>KOG0110|consensus
Probab=100.00 E-value=1.7e-35 Score=276.42 Aligned_cols=256 Identities=42% Similarity=0.724 Sum_probs=204.5
Q ss_pred CCchHHHHHHHHHHhCCCccccccccChhHHHHHHHHHhCCCcccccC---CchhHHHhhhhhhhHHHHHHHHHHHCCCC
Q psy3343 7 SSYKTKKAKELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLT---GSGAATRLAMGETEIVEKTRAFLEENGVQ 83 (274)
Q Consensus 7 ~~~k~~~~~~~~~~~~~~~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~---~~~~avr~al~e~~~~~~~~~~l~~~g~~ 83 (274)
++||++|+.+++..+...++||+|||+.++|+..++.++||++.+++| +.+ +||+|++|++++.+++.++.++|+.
T Consensus 296 ~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gs-avr~al~etr~~~e~~~~~ee~gV~ 374 (725)
T KOG0110|consen 296 SDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGS-AVRLALGETRVVQEVRRFFEENGVK 374 (725)
T ss_pred CcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcch-HHHHHHHHhhhchhhhhhHHhhCcc
Confidence 569999999999977777999999999999999999999999999999 445 9999999999999999999999999
Q ss_pred ccccchhhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 84 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 84 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
+++|++ ..++.+.|+|+|||..+..++|..+|..||.|.++.||+.+..++|+|.++.+|..|++.|++..+...++|
T Consensus 375 l~~F~~--~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~ply 452 (725)
T KOG0110|consen 375 LDAFSQ--AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLY 452 (725)
T ss_pred cccchh--hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccc
Confidence 999998 889999999999999999999999999999999999998877899999999999999999999999999999
Q ss_pred EEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcc--cc--c-cccc-ccCCCCCCceEEEeCCCC
Q psy3343 164 LEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEV--EE--N-VEED-EEREPEPDTTLYIKNLNF 237 (274)
Q Consensus 164 v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-~~~~-~~~~~~~~~~lfV~NL~~ 237 (274)
++|+|..+|... ++............ ++.+ .+.......... .. + .... ........++|||+||+|
T Consensus 453 le~aP~dvf~~~-pka~~~~~e~~~~~-ee~~-----~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf 525 (725)
T KOG0110|consen 453 LEWAPEDVFTED-PKADDLSAESRSKM-EENP-----SERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNF 525 (725)
T ss_pred cccChhhhccCC-cccccccccccccc-ccCc-----ceecccccccccccCCccccccchhhhhccccchhhhhhcCCc
Confidence 999999988854 22111111100000 0000 000000000000 00 0 0000 011112233499999999
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEecCCCCCCCCCCCCC
Q psy3343 238 NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274 (274)
Q Consensus 238 ~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g~~ls~ 274 (274)
++|.++|..+|.+.|.|.+|.|.++++++. +.|||
T Consensus 526 ~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~--k~lSm 560 (725)
T KOG0110|consen 526 DTTLEDLEDLFSKQGTVLSIEISKKKDPAN--KYLSM 560 (725)
T ss_pred ccchhHHHHHHHhcCeEEEEEEeccccccc--ccccc
Confidence 999999999999999999999999999876 88888
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=1.5e-23 Score=190.00 Aligned_cols=121 Identities=26% Similarity=0.333 Sum_probs=107.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++||||+|.+.++|..|+..|++..+.+++|.|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 446799999999999999999999999999999998753 48999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
+... . .....++|||.|||+.+|+++|++
T Consensus 184 a~p~-------~--------------------------------------------~~~~~~~lfV~nLp~~vtee~L~~ 212 (346)
T TIGR01659 184 ARPG-------G--------------------------------------------ESIKDTNLYVTNLPRTITDDQLDT 212 (346)
T ss_pred cccc-------c--------------------------------------------cccccceeEEeCCCCcccHHHHHH
Confidence 7422 0 011246899999999999999999
Q ss_pred HhhhcCCeeEEEEecCCC
Q psy3343 247 HFKKCGPIASVTVARKKD 264 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~~~ 264 (274)
+|++||.|..|+|++++.
T Consensus 213 ~F~~fG~V~~v~i~~d~~ 230 (346)
T TIGR01659 213 IFGKYGQIVQKNILRDKL 230 (346)
T ss_pred HHHhcCCEEEEEEeecCC
Confidence 999999999999998863
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.88 E-value=4.5e-22 Score=181.52 Aligned_cols=119 Identities=19% Similarity=0.330 Sum_probs=106.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.++|||+|||+.+++++|+++|++||+|.+|+|.++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999753 4899999999999999999999999999999999984
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
.. . ....+++|||+|||..+++++|+++|
T Consensus 82 ~~-------~--------------------------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f 110 (352)
T TIGR01661 82 PS-------S--------------------------------------------DSIKGANLYVSGLPKTMTQHELESIF 110 (352)
T ss_pred cc-------c--------------------------------------------cccccceEEECCccccCCHHHHHHHH
Confidence 32 0 11234689999999999999999999
Q ss_pred hhcCCeeEEEEecCCC
Q psy3343 249 KKCGPIASVTVARKKD 264 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~~ 264 (274)
++||.|..++++.+..
T Consensus 111 ~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 111 SPFGQIITSRILSDNV 126 (352)
T ss_pred hccCCEEEEEEEecCC
Confidence 9999999999998763
No 4
>KOG0127|consensus
Probab=99.88 E-value=6.1e-22 Score=180.90 Aligned_cols=171 Identities=25% Similarity=0.524 Sum_probs=114.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC--C---eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--G---ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~--~---~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..+|+|+|||+.+...+|+.+|+.||.|..|.||+. + |||||.|.+..+|..|++.+|+..|.||+|.|+||..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 689999999999999999999999999999999972 2 79999999999999999999999999999999999755
Q ss_pred -CCcccccccc-----ccccccccc-ccchhh-hhcc----chhhcccCCC--------Cccc-ccc---cc----c---
Q psy3343 171 -VFAEAKEKSK-----GKEKEKNEE-GEGEEE-KKEN----TAEEDNQQGV--------PEVE-ENV---EE----D--- 219 (274)
Q Consensus 171 -~f~~~~~~~~-----~~~~~~~~~-~~~~~~-~~~~----~~~~~~~~~~--------~~~~-~~~---~~----~--- 219 (274)
.|........ .....+..+ .+++.. .++. ..+.+..... .++. ..+ .. .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 2222111000 000000000 000000 0000 0000000000 0000 000 00 0
Q ss_pred --------ccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCC
Q psy3343 220 --------EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266 (274)
Q Consensus 220 --------~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~ 266 (274)
.......+.+|||+||||++|+++|.++|++||+|.++.|+.+++..
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~ 331 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTG 331 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCC
Confidence 01223345799999999999999999999999999999999999764
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=1.2e-21 Score=186.98 Aligned_cols=132 Identities=14% Similarity=0.208 Sum_probs=107.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+.+++++|+++|++||.|.+|.|+. ++|||||+|.+.++|..|++.|+|..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3458999999999999999999999999999999865 4689999999999999999999999999999999864
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
... ..... ... . ........++|||+|||+++++++|+++
T Consensus 185 ~~~------p~a~~----~~~--------------~----------------~~~~~~~~~rLfVgnLp~~vteedLk~l 224 (612)
T TIGR01645 185 SNM------PQAQP----IID--------------M----------------VQEEAKKFNRIYVASVHPDLSETDIKSV 224 (612)
T ss_pred ccc------ccccc----ccc--------------c----------------ccccccccceEEeecCCCCCCHHHHHHH
Confidence 321 00000 000 0 0001123469999999999999999999
Q ss_pred hhhcCCeeEEEEecCCCC
Q psy3343 248 FKKCGPIASVTVARKKDP 265 (274)
Q Consensus 248 F~~fG~I~~v~v~~~~~~ 265 (274)
|+.||.|.+|+|++++.+
T Consensus 225 Fs~FG~I~svrl~~D~~t 242 (612)
T TIGR01645 225 FEAFGEIVKCQLARAPTG 242 (612)
T ss_pred HhhcCCeeEEEEEecCCC
Confidence 999999999999998764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=5.3e-21 Score=174.45 Aligned_cols=234 Identities=15% Similarity=0.227 Sum_probs=140.2
Q ss_pred cccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh--------hhhhhh----HHHHHHHHHH-HCCCCccc---
Q psy3343 28 NSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL--------AMGETE----IVEKTRAFLE-ENGVQLDA--- 86 (274)
Q Consensus 28 n~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~--------al~e~~----~~~~~~~~l~-~~g~~~~~--- 86 (274)
+.|||+... ..+++.+|.+ |....|++ +.|++. -.+++...+. .+|..+..
T Consensus 4 ~~l~V~nLp--------~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i 75 (352)
T TIGR01661 4 TNLIVNYLP--------QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTI 75 (352)
T ss_pred cEEEEeCCC--------CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeE
Confidence 567888874 7788888866 54444444 233443 2456666553 45554321
Q ss_pred ---cchhh-hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCe
Q psy3343 87 ---FNQVV-EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTK 156 (274)
Q Consensus 87 ---~~~~~-~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~ 156 (274)
+..+. .....++|||+|||+.+++++|+.+|++||.|..+.++. .+|||||+|.+.++|..|++.|+|..
T Consensus 76 ~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~ 155 (352)
T TIGR01661 76 KVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT 155 (352)
T ss_pred EEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc
Confidence 11111 122457899999999999999999999999999988865 35899999999999999999999999
Q ss_pred eCC--eEEEEEEecCCCCcccccccc--ccc-cccccc------------------ccchhh--hhccchh--h--cccC
Q psy3343 157 FKE--VPLYLEWAPEGVFAEAKEKSK--GKE-KEKNEE------------------GEGEEE--KKENTAE--E--DNQQ 207 (274)
Q Consensus 157 ~~g--~~l~v~~a~~~~f~~~~~~~~--~~~-~~~~~~------------------~~~~~~--~~~~~~~--~--~~~~ 207 (274)
+.| .+|.|.|+............. ... ...... .....+ ...+... . ....
T Consensus 156 ~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T TIGR01661 156 PSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAV 235 (352)
T ss_pred cCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccc
Confidence 877 678888875332110000000 000 000000 000000 0000000 0 0000
Q ss_pred CC---Ccccccc-----------cccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCCC
Q psy3343 208 GV---PEVEENV-----------EEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 208 ~~---~~~~~~~-----------~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~-~~~~~g 269 (274)
.. ....... ..........+.+|||+|||+.+++++|+++|++||.|.+|+|++++ .+.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG 312 (352)
T TIGR01661 236 AQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKG 312 (352)
T ss_pred ccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccc
Confidence 00 0000000 00001113345589999999999999999999999999999999998 444444
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=3.4e-21 Score=186.29 Aligned_cols=124 Identities=24% Similarity=0.363 Sum_probs=108.2
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
.+|||+|||+++|+++|+++|++||.|.+|++.++ .|||||+|.+.++|.+|+..|++..+.|++|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999763 479999999999999999999999999999999997432
Q ss_pred CCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhh
Q psy3343 171 VFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKK 250 (274)
Q Consensus 171 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~ 250 (274)
. . . ......+|||+|||.++++++|+++|+.
T Consensus 81 ~------~--------~-----------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~ 111 (562)
T TIGR01628 81 P------S--------L-----------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSK 111 (562)
T ss_pred c------c--------c-----------------------------------cccCCCceEEcCCCccCCHHHHHHHHHh
Confidence 0 0 0 0112358999999999999999999999
Q ss_pred cCCeeEEEEecCCCCCCCC
Q psy3343 251 CGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 251 fG~I~~v~v~~~~~~~~~g 269 (274)
||.|.+|+|+++.++++.|
T Consensus 112 ~G~i~~~~i~~~~~g~skg 130 (562)
T TIGR01628 112 FGNILSCKVATDENGKSRG 130 (562)
T ss_pred cCCcceeEeeecCCCCccc
Confidence 9999999999998876655
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=6.3e-21 Score=184.40 Aligned_cols=187 Identities=26% Similarity=0.304 Sum_probs=138.4
Q ss_pred ccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh--------hhhhhh----HHHHHHHHHHH-CCCCcc-----
Q psy3343 29 SLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL--------AMGETE----IVEKTRAFLEE-NGVQLD----- 85 (274)
Q Consensus 29 ~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~--------al~e~~----~~~~~~~~l~~-~g~~~~----- 85 (274)
||||+... .++++++|.+ |....||+ ++|+++ -.+++.+.+.. ++..+.
T Consensus 2 sl~VgnLp--------~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLD--------PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIR 73 (562)
T ss_pred eEEEeCCC--------CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEE
Confidence 78888873 7788888866 44444544 334443 34555565543 333211
Q ss_pred -ccch--hhh-cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCe
Q psy3343 86 -AFNQ--VVE-ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTK 156 (274)
Q Consensus 86 -~~~~--~~~-~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~ 156 (274)
.+.. +.. ....++|||+|||.++++++|+++|+.||.|.+|.+.. ++|||||+|.+.++|..|++.|+|..
T Consensus 74 i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 153 (562)
T TIGR01628 74 IMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML 153 (562)
T ss_pred eecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE
Confidence 1111 111 12347899999999999999999999999999998875 35899999999999999999999999
Q ss_pred eCCeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCC
Q psy3343 157 FKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLN 236 (274)
Q Consensus 157 ~~g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~ 236 (274)
+.|+.|+|.+..... . +. .......++|||+|||
T Consensus 154 ~~~~~i~v~~~~~~~------~----~~------------------------------------~~~~~~~~~l~V~nl~ 187 (562)
T TIGR01628 154 LNDKEVYVGRFIKKH------E----RE------------------------------------AAPLKKFTNLYVKNLD 187 (562)
T ss_pred ecCceEEEecccccc------c----cc------------------------------------cccccCCCeEEEeCCC
Confidence 999999998754220 0 00 0012235789999999
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 237 FNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 237 ~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
+++|+++|+++|++||.|.++.|+++.+++..|
T Consensus 188 ~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G 220 (562)
T TIGR01628 188 PSVNEDKLRELFAKFGEITSAAVMKDGSGRSRG 220 (562)
T ss_pred CcCCHHHHHHHHHhcCCEEEEEEEECCCCCccc
Confidence 999999999999999999999999998776654
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.85 E-value=1.5e-20 Score=178.38 Aligned_cols=130 Identities=21% Similarity=0.341 Sum_probs=106.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHh--CCCeeCCeEEEEEEecCCCCc
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL--AYTKFKEVPLYLEWAPEGVFA 173 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l--~~~~~~g~~l~v~~a~~~~f~ 173 (274)
+++|||+|||+.+++++|+++|++||.|.+|.++++++||||+|.+.++|..|+..+ ++..+.|++|+|.|+......
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 579999999999999999999999999999999999999999999999999999874 789999999999998543100
Q ss_pred ccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCC
Q psy3343 174 EAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 253 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~ 253 (274)
.... . . ..........+|||+||++.+|+++|+++|++||.
T Consensus 82 ~~~~----------~--------------~---------------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~ 122 (481)
T TIGR01649 82 RDGN----------S--------------D---------------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK 122 (481)
T ss_pred cCCC----------C--------------c---------------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC
Confidence 0000 0 0 00001112358999999999999999999999999
Q ss_pred eeEEEEecCCC
Q psy3343 254 IASVTVARKKD 264 (274)
Q Consensus 254 I~~v~v~~~~~ 264 (274)
|.+|.|+++.+
T Consensus 123 V~~v~i~~~~~ 133 (481)
T TIGR01649 123 VLRIVTFTKNN 133 (481)
T ss_pred EEEEEEEecCC
Confidence 99999988654
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.84 E-value=6.6e-20 Score=172.99 Aligned_cols=133 Identities=22% Similarity=0.328 Sum_probs=107.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
.+..++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 45678999999999999999999999999999999976 35899999999999999996 999999999999987
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
+.... ......... ........++|||+|||+.+|+++|++
T Consensus 165 ~~~~~-------~~~~~~~~~--------------------------------~~~~~p~~~~l~v~nl~~~~te~~l~~ 205 (457)
T TIGR01622 165 SQAEK-------NRAAKAATH--------------------------------QPGDIPNFLKLYVGNLHFNITEQELRQ 205 (457)
T ss_pred cchhh-------hhhhhcccc--------------------------------cCCCCCCCCEEEEcCCCCCCCHHHHHH
Confidence 64220 000000000 000112367999999999999999999
Q ss_pred HhhhcCCeeEEEEecCCCC
Q psy3343 247 HFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~~~~ 265 (274)
+|++||.|.+|.|++++++
T Consensus 206 ~f~~~G~i~~v~~~~d~~~ 224 (457)
T TIGR01622 206 IFEPFGDIEDVQLHRDPET 224 (457)
T ss_pred HHHhcCCeEEEEEEEcCCC
Confidence 9999999999999998764
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.83 E-value=2e-19 Score=170.74 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=109.3
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Q psy3343 94 RSKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 171 (274)
Q Consensus 94 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 171 (274)
..+++|||+|||+ .+|+++|+++|+.||.|.+|.++++ +|||||+|.+.++|..|+..|+|..|.|++|+|.++....
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 3568999999998 6999999999999999999999875 5899999999999999999999999999999999975431
Q ss_pred Ccccccccccccccccccccchhhhhccchhh-cccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhh
Q psy3343 172 FAEAKEKSKGKEKEKNEEGEGEEEKKENTAEE-DNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKK 250 (274)
Q Consensus 172 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~ 250 (274)
....... ..... ......+.. ...+... .. ......-..++.+|||+|||+.+|+++|+++|++
T Consensus 353 ~~~~~~~-------~~~~~----~~~~~d~~~~~~~r~~~---~~-~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~ 417 (481)
T TIGR01649 353 VQPPREG-------QLDDG----LTSYKDYSSSRNHRFKK---PG-SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE 417 (481)
T ss_pred ccCCCCC-------cCcCC----CcccccccCCccccCCC---cc-cccccccCCCCcEEEEecCCCCCCHHHHHHHHHh
Confidence 1110000 00000 000000000 0000000 00 0000011246789999999999999999999999
Q ss_pred cCC--eeEEEEecCCCC
Q psy3343 251 CGP--IASVTVARKKDP 265 (274)
Q Consensus 251 fG~--I~~v~v~~~~~~ 265 (274)
||. |.+|++..++++
T Consensus 418 ~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 418 NGVHKVKKFKFFPKDNE 434 (481)
T ss_pred cCCccceEEEEecCCCC
Confidence 998 888988765543
No 12
>KOG0148|consensus
Probab=99.82 E-value=9.8e-20 Score=153.98 Aligned_cols=134 Identities=24% Similarity=0.348 Sum_probs=110.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.--+||+-|...++-++|++.|.+||+|..+++.+ ++|||||.|.+.++|+.||..|||..|.+|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 46799999999999999999999999999999877 579999999999999999999999999999999999976
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhh
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 249 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~ 249 (274)
+. .+.... ...++.- -.......|+|||+||+..+||+.|+++|+
T Consensus 142 Kp---------~e~n~~-----------~ltfdeV---------------~NQssp~NtsVY~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 142 KP---------SEMNGK-----------PLTFDEV---------------YNQSSPDNTSVYVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred Cc---------cccCCC-----------CccHHHH---------------hccCCCCCceEEeCCcCccccHHHHHHhcc
Confidence 62 000000 0001110 022345678999999999999999999999
Q ss_pred hcCCeeEEEEecCCC
Q psy3343 250 KCGPIASVTVARKKD 264 (274)
Q Consensus 250 ~fG~I~~v~v~~~~~ 264 (274)
+||.|..|||.+++.
T Consensus 187 ~fG~I~EVRvFk~qG 201 (321)
T KOG0148|consen 187 PFGPIQEVRVFKDQG 201 (321)
T ss_pred cCCcceEEEEecccc
Confidence 999999999998763
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=1e-18 Score=167.01 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=106.1
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccC------------CCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPF------------GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE 159 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~------------G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g 159 (274)
..+..++|||+|||+.+|+++|.++|..| +.|..+.+..++|||||+|.+.++|..|+. |+|..|.|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeC
Confidence 45566899999999999999999999874 456777787889999999999999999994 99999999
Q ss_pred eEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCC
Q psy3343 160 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNS 239 (274)
Q Consensus 160 ~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~ 239 (274)
++|.|.+.... .+...... .. ... .+. ... ...+............++|||+|||+.+
T Consensus 250 ~~l~v~r~~~~--~~~~~~~~-~~--~~~-----~~~------~~~------~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 307 (509)
T TIGR01642 250 VFLKIRRPHDY--IPVPQITP-EV--SQK-----NPD------DNA------KNVEKLVNSTTVLDSKDRIYIGNLPLYL 307 (509)
T ss_pred ceeEecCcccc--CCccccCC-CC--CCC-----CCc------ccc------cccccccccccCCCCCCEEEEeCCCCCC
Confidence 99999754321 10000000 00 000 000 000 0000000001122346799999999999
Q ss_pred CHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 240 TEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 240 tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
|+++|+++|++||.|..+.|++++.
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~ 332 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIA 332 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCC
Confidence 9999999999999999999998864
No 14
>KOG0131|consensus
Probab=99.79 E-value=3e-19 Score=143.10 Aligned_cols=123 Identities=21% Similarity=0.278 Sum_probs=107.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.+..+|||+||+..++++.|.++|-+.|+|.++.+|++ +||||++|.+.++|.-|++-||..++.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999999984 589999999999999999999999999999999987
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
... + .....+.+|||+||.+.+++..|.+.
T Consensus 87 s~~-------~-------------------------------------------~nl~vganlfvgNLd~~vDe~~L~dt 116 (203)
T KOG0131|consen 87 SAH-------Q-------------------------------------------KNLDVGANLFVGNLDPEVDEKLLYDT 116 (203)
T ss_pred ccc-------c-------------------------------------------ccccccccccccccCcchhHHHHHHH
Confidence 411 0 01224579999999999999999999
Q ss_pred hhhcCCeeE-EEEecCCCCC
Q psy3343 248 FKKCGPIAS-VTVARKKDPK 266 (274)
Q Consensus 248 F~~fG~I~~-v~v~~~~~~~ 266 (274)
|+.||.+.+ -.|++++++.
T Consensus 117 FsafG~l~~~P~i~rd~~tg 136 (203)
T KOG0131|consen 117 FSAFGVLISPPKIMRDPDTG 136 (203)
T ss_pred HHhccccccCCcccccccCC
Confidence 999999877 4788888843
No 15
>KOG0145|consensus
Probab=99.79 E-value=5.3e-19 Score=148.82 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=109.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC------eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~------~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.++|.|.-||.++|+++|+.+|+..|+|++|++.+++ ||+||.|.++++|++|+..|||.++..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 5567999999999999999999999999999999999965 7999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
|.+. .+...+.+|||.+||..+|..+|.+
T Consensus 118 ARPS---------------------------------------------------s~~Ik~aNLYvSGlPktMtqkelE~ 146 (360)
T KOG0145|consen 118 ARPS---------------------------------------------------SDSIKDANLYVSGLPKTMTQKELEQ 146 (360)
T ss_pred ccCC---------------------------------------------------hhhhcccceEEecCCccchHHHHHH
Confidence 9533 0223467999999999999999999
Q ss_pred HhhhcCCeeEEEEecCC
Q psy3343 247 HFKKCGPIASVTVARKK 263 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~~ 263 (274)
+|++||.|..-+|..|.
T Consensus 147 iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 147 IFSPFGRIITSRILVDQ 163 (360)
T ss_pred HHHHhhhhhhhhhhhhc
Confidence 99999999998888775
No 16
>KOG0123|consensus
Probab=99.78 E-value=1e-18 Score=159.38 Aligned_cols=188 Identities=23% Similarity=0.317 Sum_probs=139.6
Q ss_pred cccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh-----hhhhhhH----HHHHHHHHHHCCCC-cc--ccchh
Q psy3343 28 NSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL-----AMGETEI----VEKTRAFLEENGVQ-LD--AFNQV 90 (274)
Q Consensus 28 n~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~-----al~e~~~----~~~~~~~l~~~g~~-~~--~~~~~ 90 (274)
.+||++ ..|+.++|++ +..+.||+ +|||+++ -+++.+++..-... +. .+.-.
T Consensus 2 ~sl~vg-----------~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 2 ASLYVG-----------PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred CceecC-----------CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 578888 4567777766 44444444 6777765 24455555443322 11 01111
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...+..+.|||+||++.++..+|.++|+.||.|.+|++.. ++|| ||+|.+.+.|++|+..+||..+.|+.|+|..
T Consensus 71 ~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 71 WSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred hhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 1345556699999999999999999999999999999987 4588 9999999999999999999999999999998
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
+..+ .++..... . ....-+++||+|++.+++++.|..
T Consensus 150 ~~~~----------~er~~~~~--------------------------------~-~~~~~t~v~vk~~~~~~~~~~l~~ 186 (369)
T KOG0123|consen 150 FERK----------EEREAPLG--------------------------------E-YKKRFTNVYVKNLEEDSTDEELKD 186 (369)
T ss_pred ccch----------hhhccccc--------------------------------c-hhhhhhhhheeccccccchHHHHH
Confidence 7543 01100000 0 122357999999999999999999
Q ss_pred HhhhcCCeeEEEEecCCCCCCCCC
Q psy3343 247 HFKKCGPIASVTVARKKDPKSPGQ 270 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~~~~~~~g~ 270 (274)
+|++||.|.++.|+.+..++++|-
T Consensus 187 ~f~~~g~i~s~~v~~~~~g~~~~~ 210 (369)
T KOG0123|consen 187 LFSAYGSITSVAVMRDSIGKSKGF 210 (369)
T ss_pred hhcccCcceEEEEeecCCCCCCCc
Confidence 999999999999999999876653
No 17
>KOG0117|consensus
Probab=99.77 E-value=2.7e-18 Score=153.95 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=113.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~ 166 (274)
...+-|||+.||.++.|++|..+|++.|.|-.++|+. ++|||||.|.+.+.|++|++.||+.+|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4569999999999999999999999999999999877 3689999999999999999999999986 88888876
Q ss_pred ecC--CCCccccccccccc--ccccccc-cch-------hhhhcc-----c-----------hhhcc-cCCC-----C--
Q psy3343 167 APE--GVFAEAKEKSKGKE--KEKNEEG-EGE-------EEKKEN-----T-----------AEEDN-QQGV-----P-- 210 (274)
Q Consensus 167 a~~--~~f~~~~~~~~~~~--~~~~~~~-~~~-------~~~~~~-----~-----------~~~~~-~~~~-----~-- 210 (274)
+.. .+|..+.+..+.+. ..+.... +.. .+.+.+ . +.++. ...+ .
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 544 47777766544211 0000000 000 000000 0 00000 0000 0
Q ss_pred -ccccccccccc-CCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 211 -EVEENVEEDEE-REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 211 -~~~~~~~~~~~-~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
-+..+.+++-+ .....-..|||+||+-+||+|.|+++|++||.|..|+.++|
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 00001111111 12223358999999999999999999999999999998865
No 18
>KOG0127|consensus
Probab=99.76 E-value=4.2e-18 Score=155.95 Aligned_cols=150 Identities=23% Similarity=0.362 Sum_probs=114.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
++.+|||++||+.++.++|.++|+.+|+|..+.+.. .+|||||.|.-.++++.|+..+.+..|.|+.|.|+.|.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 348999999999999999999999999999999876 35899999999999999999999999999999999986
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
... ..+.......... +...+... ........+-..|.|+||||.|.+.+|+.+|
T Consensus 84 ~R~----r~e~~~~~e~~~v---------eK~~~q~~------------~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF 138 (678)
T KOG0127|consen 84 KRA----RSEEVEKGENKAV---------EKPIEQKR------------PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF 138 (678)
T ss_pred ccc----cchhcccccchhh---------hcccccCC------------cchhhccCccceEEeecCCcccCcHHHHHHH
Confidence 541 0000000000000 00000000 0001112346799999999999999999999
Q ss_pred hhcCCeeEEEEecCCCCCCCC
Q psy3343 249 KKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~~~~~~g 269 (274)
+.||.|..|.|+++++|+-.|
T Consensus 139 s~~G~V~Ei~IP~k~dgklcG 159 (678)
T KOG0127|consen 139 SNFGKVVEIVIPRKKDGKLCG 159 (678)
T ss_pred hhcceEEEEEcccCCCCCccc
Confidence 999999999999999988765
No 19
>KOG0109|consensus
Probab=99.76 E-value=1.4e-18 Score=148.28 Aligned_cols=111 Identities=23% Similarity=0.388 Sum_probs=101.7
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCcccc
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAK 176 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~~~~ 176 (274)
..|||+|||.++++.+|+.+|++||.|.+|.|.+ +||||+.++...|..|+..|+|.+|+|..|.|+-+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------ 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------ 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--ccceEEeecccccHHHHhhcccceecceEEEEEecccc------
Confidence 4689999999999999999999999999999985 49999999999999999999999999999999976422
Q ss_pred cccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE
Q psy3343 177 EKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~ 256 (274)
....++|+|+||.+.++..+|+..|++||+|..
T Consensus 75 -----------------------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpvie 107 (346)
T KOG0109|consen 75 -----------------------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIE 107 (346)
T ss_pred -----------------------------------------------CCCccccccCCCCccccCHHHhhhhcccCCcee
Confidence 124579999999999999999999999999999
Q ss_pred EEEecC
Q psy3343 257 VTVARK 262 (274)
Q Consensus 257 v~v~~~ 262 (274)
|.|+++
T Consensus 108 cdivkd 113 (346)
T KOG0109|consen 108 CDIVKD 113 (346)
T ss_pred eeeecc
Confidence 999876
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.75 E-value=2.4e-17 Score=157.29 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=94.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a 167 (274)
...++|||+|||+++++++|+++|++||.|..|+|+. ++|||||+|.+.++|.+|++.|++..+. |+.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3459999999999999999999999999999999875 4689999999999999999999999885 677666554
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
. ..++|||+|||.++|+++|.+.
T Consensus 136 ~---------------------------------------------------------~~~rLFVgNLP~~~TeeeL~ee 158 (578)
T TIGR01648 136 V---------------------------------------------------------DNCRLFVGGIPKNKKREEILEE 158 (578)
T ss_pred c---------------------------------------------------------cCceeEeecCCcchhhHHHHHH
Confidence 1 1368999999999999999999
Q ss_pred hhhcCC-eeEEEEe
Q psy3343 248 FKKCGP-IASVTVA 260 (274)
Q Consensus 248 F~~fG~-I~~v~v~ 260 (274)
|++++. +..+.+.
T Consensus 159 Fskv~egvv~vIv~ 172 (578)
T TIGR01648 159 FSKVTEGVVDVIVY 172 (578)
T ss_pred hhcccCCceEEEEe
Confidence 999974 5555444
No 21
>KOG0144|consensus
Probab=99.75 E-value=2.2e-18 Score=153.93 Aligned_cols=126 Identities=23% Similarity=0.378 Sum_probs=108.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCe-eCC--eEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTK-FKE--VPLYL 164 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~-~~g--~~l~v 164 (274)
.+...+||+-+|..++|.||+++|++||.|.+|.|++| +|||||.|.+.++|.+|+.+|+... |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44588999999999999999999999999999999885 4899999999999999999998854 544 67888
Q ss_pred EEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHH
Q psy3343 165 EWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSI 244 (274)
Q Consensus 165 ~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L 244 (274)
.||... .+ .......|||+-|+..+||.++
T Consensus 112 k~Ad~E--------------------------------~e------------------r~~~e~KLFvg~lsK~~te~ev 141 (510)
T KOG0144|consen 112 KYADGE--------------------------------RE------------------RIVEERKLFVGMLSKQCTENEV 141 (510)
T ss_pred cccchh--------------------------------hh------------------ccccchhhhhhhccccccHHHH
Confidence 887322 00 0112368999999999999999
Q ss_pred HHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 245 RRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 245 ~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
+++|++||.|..|.|+++.++.++|
T Consensus 142 r~iFs~fG~Ied~~ilrd~~~~sRG 166 (510)
T KOG0144|consen 142 REIFSRFGHIEDCYILRDPDGLSRG 166 (510)
T ss_pred HHHHHhhCccchhhheecccccccc
Confidence 9999999999999999999998887
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=3.6e-17 Score=156.05 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=123.5
Q ss_pred cccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh-------hhhhhh----HHHHHHHHHHH-CCCCccc--cc
Q psy3343 28 NSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL-------AMGETE----IVEKTRAFLEE-NGVQLDA--FN 88 (274)
Q Consensus 28 n~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~-------al~e~~----~~~~~~~~l~~-~g~~~~~--~~ 88 (274)
.+|||+... ..+++.+|.+ +....+|+ +.++.. -.+.+...+.. ++..+.. .-
T Consensus 59 ~~lFVgnLp--------~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 59 CEVFVGKIP--------RDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CEEEeCCCC--------CCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 478998874 6777777755 43344443 223322 23344444432 3333210 00
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHccccCCC-eeEEEee-C------CCeEEEEEecCHHHHHHHHHHhCC--CeeC
Q psy3343 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD-LGRVLVP-P------YGITGLVEFLQKNQAKAAFNSLAY--TKFK 158 (274)
Q Consensus 89 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~l~-~------~~~~afV~F~~~~~A~~A~~~l~~--~~~~ 158 (274)
........++|||+|||+++++++|.+.|++++. +..+.+. . +++||||+|.+.++|..|++.|.. ..+.
T Consensus 131 ~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 131 GVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred cccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 0112234689999999999999999999999864 4444442 1 368999999999999999998864 4678
Q ss_pred CeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCC
Q psy3343 159 EVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFN 238 (274)
Q Consensus 159 g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 238 (274)
|+.|.|.|+.... .. . ........+|||+||+++
T Consensus 211 Gr~I~VdwA~p~~------~~--------d--------------------------------~~~~~~~k~LfVgNL~~~ 244 (578)
T TIGR01648 211 GHVIAVDWAEPEE------EV--------D--------------------------------EDVMAKVKILYVRNLMTT 244 (578)
T ss_pred CceEEEEeecccc------cc--------c--------------------------------ccccccccEEEEeCCCCC
Confidence 9999999985330 00 0 001123468999999999
Q ss_pred CCHHHHHHHhhhc--CCeeEEEEecC
Q psy3343 239 STEDSIRRHFKKC--GPIASVTVARK 262 (274)
Q Consensus 239 ~tee~L~~~F~~f--G~I~~v~v~~~ 262 (274)
+|+++|+++|++| |.|.+|+++++
T Consensus 245 ~tee~L~~~F~~f~~G~I~rV~~~rg 270 (578)
T TIGR01648 245 TTEEIIEKSFSEFKPGKVERVKKIRD 270 (578)
T ss_pred CCHHHHHHHHHhcCCCceEEEEeecC
Confidence 9999999999999 99999988753
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.71 E-value=2.4e-16 Score=150.66 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=103.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.++|||+|||+.+++++|+++|+.||.|..+.|.. ++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 347999999999999999999999999999998865 35899999999999999999999999999999999985
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCC---------
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNS--------- 239 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~--------- 239 (274)
...-....... .. ...-. .. .... . .........++.+|+|.||.+.-
T Consensus 374 ~~~~~~~~~~~--~~--~~~~~--~~------~~~~----------~-~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~ 430 (509)
T TIGR01642 374 VGANQATIDTS--NG--MAPVT--LL------AKAL----------S-QSILQIGGKPTKVVQLTNLVTGDDLMDDEEYE 430 (509)
T ss_pred cCCCCCCcccc--cc--ccccc--cc------cccc----------h-hhhccccCCCceEEEeccCCchhHhcCcchHH
Confidence 43110000000 00 00000 00 0000 0 00001123456799999996421
Q ss_pred -CHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 240 -TEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 240 -tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..++|+++|++||.|.+|.|++..
T Consensus 431 ~~~edl~~~f~~~G~v~~v~i~~~~ 455 (509)
T TIGR01642 431 EIYEDVKTEFSKYGPLINIVIPRPN 455 (509)
T ss_pred HHHHHHHHHHHhcCCeeEEEeeccC
Confidence 236899999999999999999863
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=4.7e-16 Score=146.78 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=99.5
Q ss_pred ccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh------------hhhhhhHHHHHHHHHHHCCCCccccc-
Q psy3343 27 WNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL------------AMGETEIVEKTRAFLEENGVQLDAFN- 88 (274)
Q Consensus 27 wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~------------al~e~~~~~~~~~~l~~~g~~~~~~~- 88 (274)
-.+|||+... +.++..+|.+ |....|++ |..+..-.+.+.+++..+|..+..-.
T Consensus 89 ~~~l~V~nlp--------~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i 160 (457)
T TIGR01622 89 DRTVFVLQLA--------LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPI 160 (457)
T ss_pred CcEEEEeCCC--------CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeee
Confidence 4578888774 5666666644 33333333 33344456777777877765432100
Q ss_pred -----h-------------hhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHH
Q psy3343 89 -----Q-------------VVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQ 144 (274)
Q Consensus 89 -----~-------------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~ 144 (274)
. .......++|||+|||+.+++++|+++|++||.|..|.++. .+|||||+|.+.++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 0 00112258999999999999999999999999999999875 35899999999999
Q ss_pred HHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 145 AKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 145 A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
|..|+..|+|..|.|++|.|.|+.
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEcc
Confidence 999999999999999999999976
No 25
>KOG0123|consensus
Probab=99.69 E-value=1.6e-16 Score=145.09 Aligned_cols=110 Identities=23% Similarity=0.311 Sum_probs=101.0
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC---CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCc
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFA 173 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~---~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~ 173 (274)
..|||+ +++|+..|.++|+++|++.++++.++ =|||||.|.++.+|.+|+.++|...++|+++++.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd--- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD--- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC---
Confidence 468998 89999999999999999999999774 379999999999999999999999999999999998422
Q ss_pred ccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCC
Q psy3343 174 EAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 253 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~ 253 (274)
.+.|||+||+.+++...|.++|+.||+
T Consensus 76 -----------------------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ 102 (369)
T KOG0123|consen 76 -----------------------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGN 102 (369)
T ss_pred -----------------------------------------------------CceeeecCCCcccCcHHHHHHHHhhcC
Confidence 123999999999999999999999999
Q ss_pred eeEEEEecCCCC
Q psy3343 254 IASVTVARKKDP 265 (274)
Q Consensus 254 I~~v~v~~~~~~ 265 (274)
|.||+|+++.+|
T Consensus 103 ilS~kv~~~~~g 114 (369)
T KOG0123|consen 103 ILSCKVATDENG 114 (369)
T ss_pred eeEEEEEEcCCC
Confidence 999999999998
No 26
>KOG0124|consensus
Probab=99.69 E-value=4.5e-17 Score=142.96 Aligned_cols=130 Identities=14% Similarity=0.232 Sum_probs=106.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
++|||+.|.+.+.|+.|+..|.+||+|.+|.|.- .+|||||+|+-++.|..|++.|||..+.||.|+|.+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 8999999999999999999999999999998843 4699999999999999999999999999999999864211
Q ss_pred CCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhh
Q psy3343 171 VFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKK 250 (274)
Q Consensus 171 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~ 250 (274)
++.. +--++-. .+.....+|||..+.++.++++|+.+|+.
T Consensus 194 ------pQAQ--------------piID~vq--------------------eeAk~fnRiYVaSvHpDLSe~DiKSVFEA 233 (544)
T KOG0124|consen 194 ------PQAQ--------------PIIDMVQ--------------------EEAKKFNRIYVASVHPDLSETDIKSVFEA 233 (544)
T ss_pred ------cccc--------------hHHHHHH--------------------HHHHhhheEEeeecCCCccHHHHHHHHHh
Confidence 1110 0000000 01223569999999999999999999999
Q ss_pred cCCeeEEEEecCCCCC
Q psy3343 251 CGPIASVTVARKKDPK 266 (274)
Q Consensus 251 fG~I~~v~v~~~~~~~ 266 (274)
||+|.+|.+.+.+.+.
T Consensus 234 FG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 234 FGEIVKCQLARAPTGR 249 (544)
T ss_pred hcceeeEEeeccCCCC
Confidence 9999999999998754
No 27
>KOG0110|consensus
Probab=99.68 E-value=1.5e-16 Score=149.96 Aligned_cols=124 Identities=26% Similarity=0.376 Sum_probs=104.4
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--C-------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--Y-------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--~-------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
++|||+||++.+|.++|..+|..+|.|.++.|.. + .|||||+|.++++|+.|++.|+|+.++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4599999999999999999999999999998865 2 289999999999999999999999999999999998
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
... +.... +. .......++.|.|+||||..+-.+++++
T Consensus 596 ~~k------~~~~~---------------------gK---------------~~~~kk~~tKIlVRNipFeAt~rEVr~L 633 (725)
T KOG0110|consen 596 ENK------PASTV---------------------GK---------------KKSKKKKGTKILVRNIPFEATKREVRKL 633 (725)
T ss_pred cCc------ccccc---------------------cc---------------ccccccccceeeeeccchHHHHHHHHHH
Confidence 622 00000 00 0011223679999999999999999999
Q ss_pred hhhcCCeeEEEEecC
Q psy3343 248 FKKCGPIASVTVARK 262 (274)
Q Consensus 248 F~~fG~I~~v~v~~~ 262 (274)
|..||.|.+|+|+++
T Consensus 634 F~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 634 FTAFGQLKSVRLPKK 648 (725)
T ss_pred Hhcccceeeeccchh
Confidence 999999999999988
No 28
>KOG0145|consensus
Probab=99.65 E-value=7e-16 Score=130.11 Aligned_cols=197 Identities=15% Similarity=0.237 Sum_probs=123.2
Q ss_pred hhhhhhhHH----HHHHH-HHHHCCCCcc------ccchh-hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEee
Q psy3343 62 LAMGETEIV----EKTRA-FLEENGVQLD------AFNQV-VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 129 (274)
Q Consensus 62 ~al~e~~~~----~~~~~-~l~~~g~~~~------~~~~~-~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~ 129 (274)
.+|||..+- +++.+ .-..||..+. ++..| .......+|||.+||..+|..||..+|++||.|..-+|.
T Consensus 81 qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL 160 (360)
T KOG0145|consen 81 QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRIL 160 (360)
T ss_pred cccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhh
Confidence 367776442 23322 2345676654 22222 234456899999999999999999999999998655554
Q ss_pred C------CCeEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEEecCCCCccccccccccc------cccccc--cc-c
Q psy3343 130 P------YGITGLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEGVFAEAKEKSKGKE------KEKNEE--GE-G 192 (274)
Q Consensus 130 ~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~f~~~~~~~~~~~------~~~~~~--~~-~ 192 (274)
. ++|.|||.|....+|+.|++.|||..--| .+|.|.|+... .++.... ....+. +. -
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP------sq~t~~a~ls~ly~sp~rr~~Gp~h 234 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP------SQKTNQALLSQLYQSPARRYGGPMH 234 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc------ccccchhhhHHhhcCccccCCCccc
Confidence 3 57899999999999999999999988776 47999988532 1111000 000000 00 0
Q ss_pred hhhhhccchhhcccCC---CCccccc-------ccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 193 EEEKKENTAEEDNQQG---VPEVEEN-------VEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
-++.+-. .+....+. .-...+. ....-......+.+|||.||.++++|.-|+++|.+||.|..|+|++|
T Consensus 235 h~~~r~r-~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD 313 (360)
T KOG0145|consen 235 HQAQRFR-LDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD 313 (360)
T ss_pred chhhhhc-cccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEec
Confidence 0000000 00000000 0000000 00111334556789999999999999999999999999999999999
Q ss_pred CCC
Q psy3343 263 KDP 265 (274)
Q Consensus 263 ~~~ 265 (274)
.+.
T Consensus 314 ~tt 316 (360)
T KOG0145|consen 314 FTT 316 (360)
T ss_pred CCc
Confidence 864
No 29
>KOG0105|consensus
Probab=99.65 E-value=2.2e-15 Score=121.25 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=107.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.+..++|||+|||.++.+.+|.++|.+||.|..|.|.. .-.||||+|+++.+|+.||..-+|..++|..|.|+++..
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35679999999999999999999999999999998754 236999999999999999999999999999999999865
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhh
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 249 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~ 249 (274)
..-........... -... . + -......+..-....|.|..||.+-+|++|+++..
T Consensus 83 gr~s~~~~G~y~gg---grgG--g---------g-----------~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR 137 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGG---GRGG--G---------G-----------GGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR 137 (241)
T ss_pred CCcccccccccCCC---CCCC--C---------C-----------CCcccCCcccccceeEEEecCCCCCchHHHHHHHH
Confidence 52000000000000 0000 0 0 00000011222335899999999999999999999
Q ss_pred hcCCeeEEEEecCCC
Q psy3343 250 KCGPIASVTVARKKD 264 (274)
Q Consensus 250 ~fG~I~~v~v~~~~~ 264 (274)
..|.|..+.|.+|--
T Consensus 138 eaGdvCfadv~rDg~ 152 (241)
T KOG0105|consen 138 EAGDVCFADVQRDGV 152 (241)
T ss_pred hhCCeeeeeeecccc
Confidence 999999999988753
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.5e-15 Score=121.50 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=71.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|.+|.++. .++||||+|.+.++|+.|++.|++..|.|++|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999875 368999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8644
No 31
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.3e-14 Score=100.88 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=61.2
Q ss_pred EEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 99 l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
|||+|||+++|+++|+++|++||.|..+.+.++ +++|||+|.+.++|..|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988773 47999999999999999999999999999875
No 32
>KOG0121|consensus
Probab=99.56 E-value=5.7e-15 Score=112.14 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=71.3
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC------eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~------~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
..+.+++|||+||++.++|++|.++|+++|.|.+|.|-.++ |||||+|.+.++|..|++.++|..++.++|.++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 45678999999999999999999999999999999886543 799999999999999999999999999999999
Q ss_pred Eec
Q psy3343 166 WAP 168 (274)
Q Consensus 166 ~a~ 168 (274)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 975
No 33
>KOG4206|consensus
Probab=99.55 E-value=1.1e-13 Score=115.14 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=108.1
Q ss_pred CcEEEEeCCCCCCCHHHHHH----ccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 96 KRIILVKNLPYRTLPTDLKA----LFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.+|||.||+..+..++|+. +|++||.|..|.... -+|-|||.|.+.+.|..|+..|+|..|.|++++++||.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 45999999999999999988 999999999988765 46899999999999999999999999999999999997
Q ss_pred CC--CCcccccccccccccccccccchhhhhccchhhcccCCCCcc---cccc-cccccCCCCCCceEEEeCCCCCCCHH
Q psy3343 169 EG--VFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEV---EENV-EEDEEREPEPDTTLYIKNLNFNSTED 242 (274)
Q Consensus 169 ~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~lfV~NL~~~~tee 242 (274)
.+ ++..... .-.++....... .... ........+... .... .........+...||+.|||..++.+
T Consensus 89 s~sdii~~~~~-~~v~~~~k~~~~-~~~~-----~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 89 SDSDIIAQAPG-TFVEKEKKINGE-ILAR-----IKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred CccchhhccCc-eeccccCccccc-cccc-----cCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 55 1111000 000000000000 0000 000000000000 0000 00012335677899999999999999
Q ss_pred HHHHHhhhcCCeeEEEEecC
Q psy3343 243 SIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 243 ~L~~~F~~fG~I~~v~v~~~ 262 (274)
.|..+|.+|+....++++.-
T Consensus 162 ~l~~lf~qf~g~keir~i~~ 181 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPP 181 (221)
T ss_pred HHHHHHhhCcccceeEeccC
Confidence 99999999999999988753
No 34
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1e-13 Score=119.06 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC---CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~---~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+ +|||||+|.++++|..|+. |+|..|.|++|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 479999999999999999999999999999999874 5899999999999999995 999999999999999863
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=5.8e-13 Score=115.21 Aligned_cols=143 Identities=24% Similarity=0.373 Sum_probs=107.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
..+|||+|||+.+++++|+++|..||.|..+.+..+ +|||||+|.+.++|..|+..++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999999988764 48999999999999999999999999999999999753
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhh
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 249 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~ 249 (274)
. ................ .. ..............+++.|++..++...+...|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~--------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (306)
T COG0724 195 A--SQPRSELSNNLDASFA--------------KK-----------LSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK 247 (306)
T ss_pred c--cccccccccccchhhh--------------cc-----------ccccccccccccceeeccccccccchhHHHHhcc
Confidence 0 0000000000000000 00 0000112334567999999999999999999999
Q ss_pred hcCCeeEEEEecCCCC
Q psy3343 250 KCGPIASVTVARKKDP 265 (274)
Q Consensus 250 ~fG~I~~v~v~~~~~~ 265 (274)
.+|.+..+.+......
T Consensus 248 ~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 248 SRGDIVRASLPPSKDG 263 (306)
T ss_pred ccccceeeeccCCCCC
Confidence 9999987777766554
No 36
>KOG0148|consensus
Probab=99.48 E-value=1.4e-13 Score=116.90 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=99.3
Q ss_pred HHHHHHHHHhCCCcccccC----------CchhHHHhhhhhhhHHHHHHHHHHHCCCCcc--------------ccch--
Q psy3343 36 AIAEAMAETYNATKAEVLT----------GSGAATRLAMGETEIVEKTRAFLEENGVQLD--------------AFNQ-- 89 (274)
Q Consensus 36 ~v~~~~~~~~~~~~~~l~~----------~~~~avr~al~e~~~~~~~~~~l~~~g~~~~--------------~~~~-- 89 (274)
.+-++++.--.|+...++- +-.-..+-..+|..+.+..-+||-.+.|.-. .|+.
T Consensus 78 ~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~ 157 (321)
T KOG0148|consen 78 KLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVY 157 (321)
T ss_pred HHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHh
Confidence 3444555444556555542 1122334455555555555566655444311 1111
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 90 VVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 90 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.....++++|||+|++..+|+++|++.|++||+|.+|++-+++||+||.|.+.|+|..||..+|+..+.|..++|.|...
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 12456779999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
.
T Consensus 238 ~ 238 (321)
T KOG0148|consen 238 G 238 (321)
T ss_pred C
Confidence 4
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=9.3e-14 Score=126.18 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=97.0
Q ss_pred ccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh------------hhhhhhHHHHHHHHHH-HCCCCccc--
Q psy3343 27 WNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL------------AMGETEIVEKTRAFLE-ENGVQLDA-- 86 (274)
Q Consensus 27 wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~------------al~e~~~~~~~~~~l~-~~g~~~~~-- 86 (274)
=.+|||+... +.+++++|.+ +....|++ |..+..-.+++..++. .+|..+..
T Consensus 107 ~~~LfVgnLp--------~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 107 GTNLIVNYLP--------QDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CcEEEEeCCC--------CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 3468888763 6777777755 44434433 2222223445555553 35554321
Q ss_pred ----cchh-hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCC
Q psy3343 87 ----FNQV-VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYT 155 (274)
Q Consensus 87 ----~~~~-~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~ 155 (274)
+..+ ......++|||+|||+.+|+++|+++|++||.|..|.|+++ ++||||+|.+.++|.+|++.|++.
T Consensus 179 i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 179 LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred eeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 1111 12234688999999999999999999999999999998864 379999999999999999999999
Q ss_pred eeCC--eEEEEEEecCC
Q psy3343 156 KFKE--VPLYLEWAPEG 170 (274)
Q Consensus 156 ~~~g--~~l~v~~a~~~ 170 (274)
.+.+ ++|.|.|+...
T Consensus 259 ~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEH 275 (346)
T ss_pred ccCCCceeEEEEECCcc
Confidence 8876 78999998643
No 38
>KOG0107|consensus
Probab=99.47 E-value=1.1e-13 Score=110.68 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
..+.|||+||+..+++.||...|..||.|..|.|.. ..|||||+|+++.+|..|+..|+|..|.|..|.|+....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 369999999999999999999999999999998877 458999999999999999999999999999999998753
No 39
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=3.4e-13 Score=94.14 Aligned_cols=65 Identities=28% Similarity=0.375 Sum_probs=59.3
Q ss_pred EEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 99 l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
|||+|||+++++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999875 48999999999999999999999999999874
No 40
>KOG0114|consensus
Probab=99.46 E-value=3.7e-13 Score=98.68 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
-++.|||+|||+++|.++..++|.+||.|..|++-. .+|.|||.|++..+|++|++.|+|..+.++.|.|-|-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 358999999999999999999999999999999965 56899999999999999999999999999999998764
No 41
>KOG4205|consensus
Probab=99.44 E-value=3.7e-13 Score=119.40 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=103.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..+.|||++|++.++++.|++.|++||.|..|.+++ .++|+||+|.+++....++. ..-..|.|+.|-+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 568999999999999999999999999999999877 35899999999999988885 35567889988887775
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
........ ........|||+.||.++++++|++.|
T Consensus 84 ~r~~~~~~---------------------------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yf 118 (311)
T KOG4205|consen 84 SREDQTKV---------------------------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYF 118 (311)
T ss_pred Cccccccc---------------------------------------------ccccceeEEEecCcCCCCchHHHhhhh
Confidence 43110000 011134689999999999999999999
Q ss_pred hhcCCeeEEEEecCCCCC
Q psy3343 249 KKCGPIASVTVARKKDPK 266 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~~~~ 266 (274)
.+||.|..+.++.|.+..
T Consensus 119 e~~g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 119 EQFGKVADVVIMYDKTTS 136 (311)
T ss_pred hccceeEeeEEeeccccc
Confidence 999999999999998654
No 42
>KOG0122|consensus
Probab=99.41 E-value=7.1e-13 Score=111.14 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|-|.|||.++++.+|++||.+||.|.+|.|.+ ++|||||.|.+.++|.+||..|+|.-+++-.|.|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 458899999999999999999999999999999987 35899999999999999999999999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 43
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=110.90 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC---CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~---~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
...+|||+||++.+|+++|+++|+.||.|.+|.|+++ +++|||+|.++++|..|+. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4579999999999999999999999999999999884 4799999999999999995 99999999999998764
No 44
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.4e-12 Score=118.91 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--CCeEEEEEecCH--HHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--YGITGLVEFLQK--NQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--~~~~afV~F~~~--~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
....+||||||++.+++++|+.+|+.||.|.+|.|++ .+|||||+|... .++.+||..|+|..++|+.|+|..|.+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3458999999999999999999999999999999998 468999999987 789999999999999999999999864
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 45
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=3e-12 Score=88.23 Aligned_cols=67 Identities=34% Similarity=0.474 Sum_probs=63.1
Q ss_pred EEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC----eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 98 IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG----ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 98 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~----~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
+|||+|||..++.++|+++|.+||.|..+.+..+. ++|||+|.+.++|..|+..+++..+.|++|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999988765 89999999999999999999999999999876
No 46
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=4.3e-12 Score=84.83 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=51.6
Q ss_pred HHHccccCCCeeEEEeeCCC-eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 113 LKALFEPFGDLGRVLVPPYG-ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 113 l~~~F~~~G~i~~v~l~~~~-~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
|+++|++||.|.++.+.+.+ ++|||+|.+.++|..|+..|+|..+.|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999877 99999999999999999999999999999999986
No 47
>KOG0125|consensus
Probab=99.37 E-value=1.2e-12 Score=113.87 Aligned_cols=79 Identities=25% Similarity=0.272 Sum_probs=72.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+...++|+|.|||+...+-||+.+|.+||.|.+|.|.- +||||||+|+++++|++|-.+|+|..+.||.|.|..|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34458999999999999999999999999999998865 67999999999999999999999999999999999987
Q ss_pred CCC
Q psy3343 169 EGV 171 (274)
Q Consensus 169 ~~~ 171 (274)
..+
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 553
No 48
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.35 E-value=2.9e-12 Score=123.00 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||+|||+++++++|+++|+.||.|.+|+|.+ .+|||||+|.+.++|.+|+..||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 347999999999999999999999999999999976 35899999999999999999999999999999999986
Q ss_pred C
Q psy3343 169 E 169 (274)
Q Consensus 169 ~ 169 (274)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 3
No 49
>KOG1457|consensus
Probab=99.34 E-value=1.8e-11 Score=101.54 Aligned_cols=74 Identities=26% Similarity=0.352 Sum_probs=64.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CC------eEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEE
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YG------ITGLVEFLQKNQAKAAFNSLAYTKFK---EVPLYLEW 166 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~------~~afV~F~~~~~A~~A~~~l~~~~~~---g~~l~v~~ 166 (274)
++|||.+||.++...+|..+|..|-..+.+.|.. ++ .+|||.|.+...|..|+..|||.+|+ +..|++++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 8999999999999999999999986666666644 22 48999999999999999999999997 68899999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
|..+
T Consensus 115 AKSN 118 (284)
T KOG1457|consen 115 AKSN 118 (284)
T ss_pred hhcC
Confidence 9755
No 50
>KOG4207|consensus
Probab=99.28 E-value=4e-12 Score=104.21 Aligned_cols=75 Identities=31% Similarity=0.484 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
-+.|.|-||.+-++.++|+.+|++||.|-.|.|+.+ +|||||.|....+|+.|+++|+|..++|+.|.|+.|..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 488999999999999999999999999999999984 58999999999999999999999999999999998854
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 51
>KOG0144|consensus
Probab=99.28 E-value=2.6e-12 Score=115.40 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=90.8
Q ss_pred cccChhHHHHHHHHHhCCCcccccC--CchhHHHhhhhhhhHHHHHHHHHHHCCCCccccchhhhcCCCcEEEEeCCCCC
Q psy3343 30 LFLGTNAIAEAMAETYNATKAEVLT--GSGAATRLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYR 107 (274)
Q Consensus 30 lf~~~~~v~~~~~~~~~~~~~~l~~--~~~~avr~al~e~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~V~nLp~~ 107 (274)
.||..-+..++......+...-.|- ...+.||.|.+|.+.+ ...+.|||+-|+..
T Consensus 79 CFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~-----------------------~~e~KLFvg~lsK~ 135 (510)
T KOG0144|consen 79 CFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI-----------------------VEERKLFVGMLSKQ 135 (510)
T ss_pred EEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc-----------------------ccchhhhhhhcccc
Confidence 4555555555555554555444554 3466777777766443 12478999999999
Q ss_pred CCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCC-eeCC--eEEEEEEecCC
Q psy3343 108 TLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYT-KFKE--VPLYLEWAPEG 170 (274)
Q Consensus 108 ~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~-~~~g--~~l~v~~a~~~ 170 (274)
+||.+++++|++||.|++|.|.+ ++|||||.|.+.+.|..|++.|||. ++.| .+|.|.||..+
T Consensus 136 ~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 136 CTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 99999999999999999999987 5799999999999999999999995 4665 68999999644
No 52
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.27 E-value=3.4e-11 Score=83.34 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=64.3
Q ss_pred EEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 98 IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 98 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
+|+|+|||+.+++++|+++|..||.|..+.+..+ .++|||+|.+.++|..|+..+++..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998874 58999999999999999999999999999998864
No 53
>KOG0147|consensus
Probab=99.27 E-value=1.7e-12 Score=119.78 Aligned_cols=140 Identities=26% Similarity=0.411 Sum_probs=108.3
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
..+..+++|+--|+-.+++-+|.++|+.+|.|..|++.. ++|.|||+|.+.+....|+ .|.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 355668899999999999999999999999999999876 4589999999999999999 599999999999998
Q ss_pred EecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHH
Q psy3343 166 WAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIR 245 (274)
Q Consensus 166 ~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~ 245 (274)
..... .+........ ..+ ..-..+...|||+||+|++++++|+
T Consensus 254 ~sEae-------knr~a~~s~a-------------~~~-----------------k~~~~p~~rl~vgnLHfNite~~lr 296 (549)
T KOG0147|consen 254 LSEAE-------KNRAANASPA-------------LQG-----------------KGFTGPMRRLYVGNLHFNITEDMLR 296 (549)
T ss_pred ccHHH-------HHHHHhcccc-------------ccc-----------------cccccchhhhhhcccccCchHHHHh
Confidence 65311 0000000000 000 0011233449999999999999999
Q ss_pred HHhhhcCCeeEEEEecCC-CCCCCC
Q psy3343 246 RHFKKCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 246 ~~F~~fG~I~~v~v~~~~-~~~~~g 269 (274)
.+|++||.|..|.+++|. .|...|
T Consensus 297 ~ifepfg~Ie~v~l~~d~~tG~skg 321 (549)
T KOG0147|consen 297 GIFEPFGKIENVQLTKDSETGRSKG 321 (549)
T ss_pred hhccCcccceeeeeccccccccccC
Confidence 999999999999999997 666655
No 54
>KOG0126|consensus
Probab=99.27 E-value=2.5e-12 Score=103.47 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=73.3
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy3343 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPL 162 (274)
Q Consensus 89 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l 162 (274)
....-..+.-|||+|||+..||.||..+|++||.|..|.|.+ ++||||+.|++..+...|+..|||..|.||.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 345566789999999999999999999999999999999988 35899999999999999999999999999999
Q ss_pred EEEEec
Q psy3343 163 YLEWAP 168 (274)
Q Consensus 163 ~v~~a~ 168 (274)
+|+...
T Consensus 108 rVDHv~ 113 (219)
T KOG0126|consen 108 RVDHVS 113 (219)
T ss_pred Eeeecc
Confidence 998764
No 55
>KOG0113|consensus
Probab=99.26 E-value=1.7e-11 Score=105.61 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=70.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+-++|||.-|+++++|..|+..|+.||.|..|.|.. ++|||||+|.+..+...|++...|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45569999999999999999999999999999999987 358999999999999999999999999999999977
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 54
No 56
>KOG0117|consensus
Probab=99.25 E-value=1.3e-11 Score=111.33 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..|||+||+.++|++.|+++|+.||.|.+|..+++ ||||+|.+.++|.+|++.+||..|.|.+|.|..|.+.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 78999999999999999999999999999999877 9999999999999999999999999999999998643
No 57
>KOG0149|consensus
Probab=99.23 E-value=1.3e-11 Score=103.20 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=65.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
.-++|||++|+|.++.+.|+++|++||+|.+..+.. ++|||||+|.+.++|.+|++. ..-.|+||.-.|..|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 348999999999999999999999999998888765 468999999999999999973 4567899998888875
Q ss_pred C
Q psy3343 169 E 169 (274)
Q Consensus 169 ~ 169 (274)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 58
>KOG0146|consensus
Probab=99.21 E-value=6.7e-11 Score=100.58 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCe-eCC--eEEEEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTK-FKE--VPLYLEW 166 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~-~~g--~~l~v~~ 166 (274)
..++|||+-|...-.|+|++.+|..||.|.+|.+.+ ++|+|||.|.+.-+|..||..|+|.. +-| ..|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 458999999999999999999999999999998876 57999999999999999999999954 444 5688888
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 98 AD 99 (371)
T KOG0146|consen 98 AD 99 (371)
T ss_pred cc
Confidence 85
No 59
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=7.7e-11 Score=80.72 Aligned_cols=64 Identities=28% Similarity=0.400 Sum_probs=59.2
Q ss_pred EeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 101 VKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 101 V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
|+|||..+++++|+.+|++||.|..+.+... +++|||+|.+.++|..|+..+++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999988763 479999999999999999999999999999876
No 60
>KOG0130|consensus
Probab=99.18 E-value=3.7e-11 Score=92.32 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
....|||.++...+++++|.+.|..||.|..+.|..+ +|||+|+|.+.++|+.|+..+||..+.|.+|.|+|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4578999999999999999999999999999988763 5899999999999999999999999999999999985
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 33
No 61
>KOG0111|consensus
Probab=99.15 E-value=3.3e-11 Score=99.79 Aligned_cols=76 Identities=26% Similarity=0.367 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||++|..++++.-|...|-+||.|..|.+|. .+|||||+|...++|..|+..||+..+.||.|+|.+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 458999999999999999999999999999999987 36899999999999999999999999999999999996
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
+.
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 54
No 62
>KOG1190|consensus
Probab=99.14 E-value=7.9e-10 Score=99.01 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=104.1
Q ss_pred CcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCCC-eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCc
Q psy3343 96 KRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYG-ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFA 173 (274)
Q Consensus 96 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~~-~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~ 173 (274)
+++|.|.||.. .+|.+-|..+|+-||.|.+|.|...+ --|+|+|.+...|..|+..|+|..+.|++|+|.+.......
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 68999999975 48999999999999999999998854 58999999999999999999999999999999987533111
Q ss_pred ccccccccccccccccccchhhhhccchhhcc-cCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcC
Q psy3343 174 EAKEKSKGKEKEKNEEGEGEEEKKENTAEEDN-QQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCG 252 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG 252 (274)
-+.....+ +.- ++ ++.... .+. +......--.--+++.+|...|+|.++++|+|+.+|..-|
T Consensus 377 lp~egq~d-~gl-T~-----------dy~~spLhrf----kkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g 439 (492)
T KOG1190|consen 377 LPREGQED-QGL-TK-----------DYGNSPLHRF----KKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPG 439 (492)
T ss_pred CCCCCCcc-ccc-cc-----------cCCCCchhhc----cCcccccccccCCchhheeeccCCcccchhHHHHhhhcCC
Confidence 11110000 000 00 000000 000 0000000001224677999999999999999999999998
Q ss_pred CeeEEEEecCCC
Q psy3343 253 PIASVTVARKKD 264 (274)
Q Consensus 253 ~I~~v~v~~~~~ 264 (274)
...+....--++
T Consensus 440 ~~vkafkff~kd 451 (492)
T KOG1190|consen 440 GQVKAFKFFQKD 451 (492)
T ss_pred ceEEeeeecCCC
Confidence 887766554333
No 63
>KOG4212|consensus
Probab=99.12 E-value=1.1e-09 Score=98.88 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=112.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccc-cCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFE-PFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..+.+||.|||+++...+|+++|. +.|.|..|.|.- .+++|.|+|.+++.+++|++.||...+.||+|.|.-.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999996 689999998865 46899999999999999999999999999999997665
Q ss_pred CC--------------CCcccccccccccccccccccchhhhhccc----hhhcccCCCCccccccc-------------
Q psy3343 169 EG--------------VFAEAKEKSKGKEKEKNEEGEGEEEKKENT----AEEDNQQGVPEVEENVE------------- 217 (274)
Q Consensus 169 ~~--------------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------------- 217 (274)
.. .|.....-+.- ...+...-.-.-..... .+........+...+..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G--~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGG--NGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecc--cccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 42 01100000000 00000000000000000 00000000000011000
Q ss_pred -c----cccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 218 -E----DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 218 -~----~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
. .....++....+||.||.+.+....|++.|.-.|.|.++.+..++.+.+.|
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G 257 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRG 257 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCC
Confidence 0 011234445689999999999999999999999999999999999987766
No 64
>KOG0106|consensus
Probab=99.10 E-value=1.2e-10 Score=97.73 Aligned_cols=129 Identities=19% Similarity=0.324 Sum_probs=96.6
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCcccc
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAK 176 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~~~~ 176 (274)
..+||++||+.+.+.+|..+|..||.|..+.|.. ||+||+|.+..+|.-|+..|++..|.|-.+.|+|+...-.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999998853 68999999999999999999999999988999998532000000
Q ss_pred cccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE
Q psy3343 177 EKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~ 256 (274)
+... .+..-. . .-.......+.++|.|++-.+.+.+|.++|.++|.+.+
T Consensus 80 ~~~g-~r~~~~---------------~---------------~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~ 128 (216)
T KOG0106|consen 80 PRGG-DRRSDS---------------R---------------RYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTY 128 (216)
T ss_pred CCCC-Cccchh---------------h---------------ccCCcccccceeeeccchhhhhHHHHhhhhcccCCCch
Confidence 0000 000000 0 00011234578999999999999999999999999955
Q ss_pred EE
Q psy3343 257 VT 258 (274)
Q Consensus 257 v~ 258 (274)
..
T Consensus 129 ~~ 130 (216)
T KOG0106|consen 129 VD 130 (216)
T ss_pred hh
Confidence 43
No 65
>KOG0108|consensus
Probab=99.06 E-value=3.4e-10 Score=104.87 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=69.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
+.|||||+|+++++++|..+|+..|.|.++++..+ +||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999763 489999999999999999999999999999999999644
No 66
>KOG1190|consensus
Probab=99.06 E-value=2.9e-10 Score=101.80 Aligned_cols=159 Identities=16% Similarity=0.256 Sum_probs=106.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~~~ 170 (274)
..+.++|.++|||++++|+||..++.+||.|..+.+...+..||++|.+.++|...+..... -.+.|++|+|+|....
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~ 104 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHS 104 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHH
Confidence 33679999999999999999999999999999999998888999999999998875543333 3478999999997544
Q ss_pred CCcccccccccccccccccccchhhhhccchh-hcccCCCCcccccccccccCCCCCC--ceEEEeCCCCCCCHHHHHHH
Q psy3343 171 VFAEAKEKSKGKEKEKNEEGEGEEEKKENTAE-EDNQQGVPEVEENVEEDEEREPEPD--TTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 171 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~lfV~NL~~~~tee~L~~~ 247 (274)
.+.+....... +.... +. ....+..................++ -+++|.|+-+.+|-+-|..+
T Consensus 105 ~lkt~s~p~q~-r~~~v-------------y~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 105 ELKTDSQPNQI-RGQAV-------------YQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred HHhccCchhhh-hhhhH-------------HhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 33333222100 00000 00 0000000000000000001112222 37889999999999999999
Q ss_pred hhhcCCeeEEEEecCCCC
Q psy3343 248 FKKCGPIASVTVARKKDP 265 (274)
Q Consensus 248 F~~fG~I~~v~v~~~~~~ 265 (274)
|++||.|..+.-..+.++
T Consensus 171 FS~fG~VlKIiTF~Knn~ 188 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTKNNG 188 (492)
T ss_pred HhhcceeEEEEEEecccc
Confidence 999999999887777665
No 67
>KOG4211|consensus
Probab=99.04 E-value=2.8e-09 Score=97.66 Aligned_cols=135 Identities=13% Similarity=0.217 Sum_probs=99.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..-.|-+++|||++|++||.++|+-++ |.++.+++. .|-|||+|.+.+++++|++ .+...+..|-|.|--+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 346778899999999999999999987 778888773 3689999999999999998 5667777777777544211
Q ss_pred CCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhh
Q psy3343 171 VFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKK 250 (274)
Q Consensus 171 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~ 250 (274)
+ .....+ . .........-.|-++.|||.||+++|.++|+.
T Consensus 87 -------e----~d~~~~--------------~---------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG 126 (510)
T KOG4211|consen 87 -------E----ADWVMR--------------P---------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG 126 (510)
T ss_pred -------c----cccccc--------------C---------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcC
Confidence 0 000000 0 00001123458999999999999999999998
Q ss_pred cCCeeE-EEEecCCCCCCCCCC
Q psy3343 251 CGPIAS-VTVARKKDPKSPGQF 271 (274)
Q Consensus 251 fG~I~~-v~v~~~~~~~~~g~~ 271 (274)
.--|.. +.++.++.+++.|+.
T Consensus 127 L~Iv~~gi~l~~d~rgR~tGEA 148 (510)
T KOG4211|consen 127 LEIVPDGILLPMDQRGRPTGEA 148 (510)
T ss_pred CcccccceeeeccCCCCcccce
Confidence 866666 667888888887764
No 68
>KOG0109|consensus
Probab=99.03 E-value=2.8e-10 Score=97.89 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=70.9
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
.....++|+|+||.+.++..+|+..|.+||++.+|.|.+ +|+||.|...++|..|++.|++..|.|+++.|+.....
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 344569999999999999999999999999999999975 49999999999999999999999999999999987654
No 69
>KOG0147|consensus
Probab=99.03 E-value=2.6e-10 Score=105.48 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 98 IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 98 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
.|||+||.+++++++|+.+|++||.|..|.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|..-...
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 399999999999999999999999999999876 3689999999999999999999999999999999866443
No 70
>KOG0132|consensus
Probab=98.97 E-value=1.1e-09 Score=104.75 Aligned_cols=75 Identities=23% Similarity=0.480 Sum_probs=72.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
+++||||.|+.++++.||..+|+.||.|.+|.+...++||||.+.+..+|.+|+..|+...+.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999644
No 71
>KOG0153|consensus
Probab=98.96 E-value=2.9e-09 Score=93.65 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=72.0
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC-CeeCCeEEEEEEec
Q psy3343 90 VVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAP 168 (274)
Q Consensus 90 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~-~~~~g~~l~v~~a~ 168 (274)
+....+-++|||++|...+++.+|+++|-+||.|.++++...+++|||+|.+.++|+.|...+-. ..|+|+.|.|.|..
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 44566779999999999999999999999999999999998889999999999999998877544 66899999999997
Q ss_pred C
Q psy3343 169 E 169 (274)
Q Consensus 169 ~ 169 (274)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 5
No 72
>KOG0415|consensus
Probab=98.92 E-value=1.5e-09 Score=95.66 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=72.7
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC------eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~------~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
...++.++|||.-|.+-+|.++|.-+|+.||.|.+|.+.++. .||||+|.+.+++++|+-.|.+..|+++.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 356677999999999999999999999999999999998853 49999999999999999999999999999999
Q ss_pred EEecC
Q psy3343 165 EWAPE 169 (274)
Q Consensus 165 ~~a~~ 169 (274)
+|++.
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 99763
No 73
>KOG1548|consensus
Probab=98.92 E-value=9e-09 Score=90.60 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=97.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCee--------EEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLG--------RVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKE 159 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g 159 (274)
...++.|||.|||.++|-+++.++|+++|-|. .|.|-++ +|=|++.|...+++..|+..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34568899999999999999999999999773 3444432 3679999999999999999999999999
Q ss_pred eEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCC---
Q psy3343 160 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLN--- 236 (274)
Q Consensus 160 ~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~--- 236 (274)
+.|+|+.|.-. .......... ...+.. +. ....+.+. +.-... ...+.+......++|.++|+=
T Consensus 211 ~~~rVerAkfq---~Kge~~~~~k-~k~k~~----~~-kk~~k~q~---k~~dw~-pd~~~~sk~r~~~tVi~kn~Ftp~ 277 (382)
T KOG1548|consen 211 KKLRVERAKFQ---MKGEYDASKK-EKGKCK----DK-KKLKKQQQ---KLLDWR-PDRDDPSKARADRTVILKNMFTPE 277 (382)
T ss_pred cEEEEehhhhh---hccCcCcccc-cccccc----cH-HHHHHHHH---hhcccC-CCccccccccCCcEEEeeecCCHH
Confidence 99999998533 1100000000 000000 00 00000000 000000 001112234456799999982
Q ss_pred -CCCC-------HHHHHHHhhhcCCeeEEEEe
Q psy3343 237 -FNST-------EDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 237 -~~~t-------ee~L~~~F~~fG~I~~v~v~ 260 (274)
+..+ .++|++-+++||.|.+|.|.
T Consensus 278 ~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~ 309 (382)
T KOG1548|consen 278 DFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY 309 (382)
T ss_pred HhccCHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence 3444 46677779999999999877
No 74
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=7.7e-09 Score=72.31 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHHHHccc----cCCCeeEEE---eeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 110 PTDLKALFE----PFGDLGRVL---VPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 110 e~~l~~~F~----~~G~i~~v~---l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
+++|+++|+ +||.|.+|. +++ .+|||||+|.+.++|..|+..|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888998 999998884 332 3689999999999999999999999999999876
No 75
>KOG4208|consensus
Probab=98.79 E-value=1.7e-08 Score=83.09 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=71.2
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccC-CCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPF-GDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
.......+||..+|....+.++..+|.+| |.+.++++.+ ++|||||+|++++.|.-|-+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456899999999999999999999998 7888999866 4589999999999999999999999999999999
Q ss_pred EEecCC
Q psy3343 165 EWAPEG 170 (274)
Q Consensus 165 ~~a~~~ 170 (274)
.+-|+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998765
No 76
>KOG4454|consensus
Probab=98.77 E-value=1.8e-09 Score=89.57 Aligned_cols=72 Identities=21% Similarity=0.108 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC----eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG----ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~----~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.++|||+|+...++++-|.++|-+-|+|..|.|+..+ .||||.|.+.-+..-|+..+||..+.++++.+.+-
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 5899999999999999999999999999999998732 49999999999999999999999999988777654
No 77
>KOG0146|consensus
Probab=98.67 E-value=2.1e-08 Score=85.55 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=68.7
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
....+|+|||-.||.+....||..+|-+||.|.+.++-. +++||||.|.++.+|+.||..|||..|.-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 345679999999999999999999999999997766533 57899999999999999999999999999999998
Q ss_pred Eec
Q psy3343 166 WAP 168 (274)
Q Consensus 166 ~a~ 168 (274)
...
T Consensus 361 LKR 363 (371)
T KOG0146|consen 361 LKR 363 (371)
T ss_pred hcC
Confidence 754
No 78
>KOG4661|consensus
Probab=98.66 E-value=3.6e-08 Score=91.80 Aligned_cols=76 Identities=25% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||.+|+..+...+|+.+|++||.|.-..+.. .++|+||++.+..+|.+||..|+.+.++|+.|.|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 448999999999999999999999999997776654 35899999999999999999999999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 44
No 79
>KOG0131|consensus
Probab=98.63 E-value=4.5e-08 Score=79.18 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEE-EeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV-LVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.+|||+||.+.+++..|.+.|+.||.|.+. .+.+ .++||||.|.+.+.+.+|+..++|..+..+++.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 445899999999999999999999999987542 2222 347999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 174 a~k~ 177 (203)
T KOG0131|consen 174 AFKK 177 (203)
T ss_pred EEec
Confidence 9644
No 80
>KOG0129|consensus
Probab=98.61 E-value=7.8e-07 Score=82.35 Aligned_cols=139 Identities=15% Similarity=0.205 Sum_probs=90.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---------CCe---EEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---------YGI---TGLVEFLQKNQAKAAFNSLAYTKFKEV 160 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---------~~~---~afV~F~~~~~A~~A~~~l~~~~~~g~ 160 (274)
.+..+.|||++||++++|++|...|..||.+ .|..+. .+| |+|+.|+++.+...-+.+.. ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hccc
Confidence 4456899999999999999999999999976 344441 234 99999999988877554432 2444
Q ss_pred EEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCC
Q psy3343 161 PLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNST 240 (274)
Q Consensus 161 ~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~t 240 (274)
.+++....... ....-+ .+.-.+. +++ --.+....-.+..||||+.||-.++
T Consensus 332 ~~yf~vss~~~-k~k~VQ---IrPW~la---------------------Ds~---fv~d~sq~lDprrTVFVGgvprpl~ 383 (520)
T KOG0129|consen 332 NYYFKVSSPTI-KDKEVQ---IRPWVLA---------------------DSD---FVLDHNQPIDPRRTVFVGGLPRPLT 383 (520)
T ss_pred ceEEEEecCcc-ccccee---EEeeEec---------------------cch---hhhccCcccCccceEEecCCCCcch
Confidence 44444332110 000000 0000000 000 0000112334668999999999999
Q ss_pred HHHHHHHhh-hcCCeeEEEEecCC
Q psy3343 241 EDSIRRHFK-KCGPIASVTVARKK 263 (274)
Q Consensus 241 ee~L~~~F~-~fG~I~~v~v~~~~ 263 (274)
-++|..+|+ -||.|.+|-|=+|+
T Consensus 384 A~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 384 AEELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred HHHHHHHHHHhcCceEEEEeccCc
Confidence 999999998 89999999999883
No 81
>KOG0124|consensus
Probab=98.59 E-value=1.2e-07 Score=84.24 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=70.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
.+...+|||..+.++.+++||+..|+.||+|..|.+.+ .+||||++|.+..+-..|+..||-..+.|.-|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 45668999999999999999999999999999999976 358999999999999999999999999999999987
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 63
No 82
>KOG0151|consensus
Probab=98.59 E-value=7.9e-08 Score=91.53 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=69.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
....++|||+||++.++++.|...|..||+|.+|+|+- .+.+|||-|-+..+|+.|++.|+|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45669999999999999999999999999998888753 246999999999999999999999999999999
Q ss_pred EEEec
Q psy3343 164 LEWAP 168 (274)
Q Consensus 164 v~~a~ 168 (274)
+.|+.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99984
No 83
>KOG4212|consensus
Probab=98.54 E-value=1.4e-07 Score=85.51 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=67.7
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..+..+.|||+|||++.|...|++-|..||.|....|+.. +.-+.|.|.++++|+.|+..|+|.++.|+.|.|.|+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4566789999999999999999999999999988888542 234699999999999999999999999999999874
No 84
>KOG0116|consensus
Probab=98.51 E-value=1.7e-07 Score=86.61 Aligned_cols=73 Identities=25% Similarity=0.299 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----C--CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----Y--GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~--~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
....|||+|||++++..+|+++|..||.|....|.. . .+||||+|.+.++++.|+.+ +-..++++.|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999998777754 2 27999999999999999985 6788899999998643
No 85
>KOG4660|consensus
Probab=98.49 E-value=6.8e-08 Score=89.89 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=65.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
.....+|+|-|||..+++++|+.+|+.||+|..|+..+ ..+..||+|.+..+|+.|+++|++.++.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34558999999999999999999999999999998877 458999999999999999999999999999887
No 86
>KOG0533|consensus
Probab=98.48 E-value=4.8e-07 Score=77.76 Aligned_cols=76 Identities=30% Similarity=0.389 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
..+.|+|.|||+.++.+||+++|..||.+..+.+..+ .|.|-|.|...++|..|++.++|..++|+++.+.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3488999999999999999999999999998888763 27999999999999999999999999999999987654
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 4
No 87
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.45 E-value=1.7e-07 Score=64.56 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=33.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 230 lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
|||+|||.++|+++|+++|++||.|..+.++.+..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~ 36 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSG 36 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTS
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccc
Confidence 799999999999999999999999999999998443
No 88
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.45 E-value=3.8e-07 Score=72.94 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=37.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+++|||+|||+.+|+++|+++|++||.|.+|.|++++.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~ 71 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE 71 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC
Confidence 4567999999999999999999999999999999999874
No 89
>KOG0128|consensus
Probab=98.44 E-value=1.4e-08 Score=98.34 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=93.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
+...++||+||++.+.+.+|...|..+|.+..+++.- -+|+||++|.+++++.+|+.. ....+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh--------
Confidence 4457899999999999999999999999887766641 358999999999999999973 3222222
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
...|||.|+||..|.+.|+.+
T Consensus 736 -----------------------------------------------------------K~~v~i~g~pf~gt~e~~k~l 756 (881)
T KOG0128|consen 736 -----------------------------------------------------------KISVAISGPPFQGTKEELKSL 756 (881)
T ss_pred -----------------------------------------------------------hhhhheeCCCCCCchHHHHhh
Confidence 137999999999999999999
Q ss_pred hhhcCCeeEEEEecCCCCCCCCCC
Q psy3343 248 FKKCGPIASVTVARKKDPKSPGQF 271 (274)
Q Consensus 248 F~~fG~I~~v~v~~~~~~~~~g~~ 271 (274)
|+.+|.+.+.+++..++|++.|+.
T Consensus 757 ~~~~gn~~~~~~vt~r~gkpkg~a 780 (881)
T KOG0128|consen 757 ASKTGNVTSLRLVTVRAGKPKGKA 780 (881)
T ss_pred ccccCCccccchhhhhccccccce
Confidence 999999999999999999988874
No 90
>KOG1456|consensus
Probab=98.36 E-value=1.7e-05 Score=70.91 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=105.5
Q ss_pred hcCCCcEEEEeCCCCC-CCHHHHHHccccCCCeeEEEeeCCC-eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 92 EARSKRIILVKNLPYR-TLPTDLKALFEPFGDLGRVLVPPYG-ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~l~~~~-~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
...+.+++.|-+|... ++.+-|..+|..||.|.+|.+++.+ |.|.|++.+....++|+..||+..+.|..|.|..+..
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4456799999999875 7889999999999999999999865 7999999999999999999999999999998887643
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccc--cCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDE--EREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
........---.+....-+ .+..++. +.....+.. ..-..++++|..-|.|..+||+.|.++
T Consensus 363 ~~v~~~~pflLpDgSpSfK-----------dys~SkN-----nRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i 426 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFK-----------DYSGSKN-----NRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGI 426 (494)
T ss_pred cccccCCceecCCCCcchh-----------hcccccc-----cccCChhHhhcccccCCcceeEEecCCCccCHHHHHHH
Confidence 3211110000000000000 0000000 000000000 012346789999999999999999999
Q ss_pred hhhcCC-eeEEEEecCCCCC
Q psy3343 248 FKKCGP-IASVTVARKKDPK 266 (274)
Q Consensus 248 F~~fG~-I~~v~v~~~~~~~ 266 (274)
|..-+. ..+++|.--+.-+
T Consensus 427 ~nek~v~~~svkvFp~kser 446 (494)
T KOG1456|consen 427 CNEKDVPPTSVKVFPLKSER 446 (494)
T ss_pred hhhcCCCcceEEeecccccc
Confidence 975432 5667776555433
No 91
>KOG0121|consensus
Probab=98.27 E-value=7.9e-07 Score=68.09 Aligned_cols=44 Identities=34% Similarity=0.630 Sum_probs=39.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
..+++|||+||++.|+||+|.++|+.+|+|..|.+-.|+..+.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktp 77 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTP 77 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCc
Confidence 45789999999999999999999999999999988888887654
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=2.7e-06 Score=60.49 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=48.7
Q ss_pred cEEEEeCCCCCCCHHHHH----HccccCC-CeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLK----ALFEPFG-DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~----~~F~~~G-~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
+.|+|.|||.+.+...|+ +++.-+| .|..| .++.|+|.|.+++.|.+|.+.|+|-.+.|..|.|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 579999999998877655 5666664 56666 4689999999999999999999999999999999998644
No 93
>KOG4209|consensus
Probab=98.23 E-value=2.5e-06 Score=73.27 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=70.1
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.....+.+||+|+.+.+|.+++...|+.||.|..+.++++ ++|+||+|.+.+.+..|+. |+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3456799999999999999999999999999998888773 5799999999999999998 99999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
+...+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87544
No 94
>KOG0120|consensus
Probab=98.23 E-value=1.1e-06 Score=82.35 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+...+||++||...++.++.++...||.+....+.. ++||||.+|.++.....|+..|||..+.+..|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44668999999999999999999999999997777654 468999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
|..+
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 8655
No 95
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.18 E-value=1.8e-06 Score=59.80 Aligned_cols=38 Identities=37% Similarity=0.704 Sum_probs=33.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCC
Q psy3343 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267 (274)
Q Consensus 230 lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~ 267 (274)
|||+|||+++++++|+++|+.||.|..+++..++++..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~ 38 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQS 38 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeecccc
Confidence 79999999999999999999999999999999877543
No 96
>KOG4205|consensus
Probab=98.10 E-value=4e-06 Score=74.81 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=66.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
...|||++||.+++++++++.|.+||.|..+.++.+ ++|+||.|.+.+++.+++. .....|.++.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 459999999999999999999999999988887763 5899999999999999986 678899999999999875
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
+
T Consensus 176 k 176 (311)
T KOG4205|consen 176 K 176 (311)
T ss_pred h
Confidence 5
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.08 E-value=2.3e-05 Score=58.07 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=60.8
Q ss_pred cEEEEeCCCCCCCHHHHHHccccC--CCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeC----CeEEEE
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPF--GDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFK----EVPLYL 164 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~----g~~l~v 164 (274)
++|-|+|||...|.++|.+++... |...-+.||- +.|||||.|.+++.|..-.+.++|.... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999887653 6667777765 3589999999999999999999998875 456777
Q ss_pred EEecC
Q psy3343 165 EWAPE 169 (274)
Q Consensus 165 ~~a~~ 169 (274)
.||..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88753
No 98
>KOG0114|consensus
Probab=98.03 E-value=8e-06 Score=60.36 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=36.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
..++.|||+|||+++|.|+.-++|.+||.|.-++|--.++.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T 56 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET 56 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc
Confidence 34679999999999999999999999999999999776664
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=1.4e-05 Score=60.39 Aligned_cols=69 Identities=28% Similarity=0.324 Sum_probs=44.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCC-----eeCCeEEEEE
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYT-----KFKEVPLYLE 165 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~-----~~~g~~l~v~ 165 (274)
+.|.|.+++..++.++|++.|+.||.|..|.+.+.-..|||.|.+++.|+.|+..+.-. .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57889999999999999999999999999999887679999999999999999877544 4455544443
No 100
>KOG4676|consensus
Probab=98.00 E-value=7.6e-06 Score=73.48 Aligned_cols=167 Identities=15% Similarity=0.143 Sum_probs=99.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC---------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~---------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...|.|.||.+++|.++++.||.-.|.|..+.|.++ ...|||-|.+...+..|.. |..+.|-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 458999999999999999999999999999988762 2489999999999998886 788888888877765
Q ss_pred ecCCCCcccccc---cccccccccccccchhh-hhccchhhcccCCCCcccccccccccCCCC--CCceEEEeCCCCCCC
Q psy3343 167 APEGVFAEAKEK---SKGKEKEKNEEGEGEEE-KKENTAEEDNQQGVPEVEENVEEDEEREPE--PDTTLYIKNLNFNST 240 (274)
Q Consensus 167 a~~~~f~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lfV~NL~~~~t 240 (274)
...........- ......+.+...+..-+ +..+...+.. ....-...+..-+.+.... --.+++|.+|+..+-
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~-p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHS-PNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCC-ccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 543311111000 00000000000000000 0000000000 0000000000000000011 125899999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 241 EDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 241 ee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..++-++|..+|+|.++++.-+.+
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~ 188 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSR 188 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCC
Confidence 999999999999999998876655
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=97.95 E-value=1.8e-05 Score=53.71 Aligned_cols=35 Identities=37% Similarity=0.679 Sum_probs=33.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 229 ~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
+|||+|||..+++++|+++|++||.|..+.+..++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~ 35 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT 35 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 58999999999999999999999999999999876
No 102
>KOG1457|consensus
Probab=97.92 E-value=9.1e-06 Score=68.00 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC--eEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG--ITGLVEFLQKNQAKAAFNSLAYTKFK 158 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~--~~afV~F~~~~~A~~A~~~l~~~~~~ 158 (274)
+-..+|||-||.++++|++|+.+|+.|-....++|...+ ..||++|++.+.|..|+..|+|..+.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 344799999999999999999999999877777776533 47999999999999999999997653
No 103
>KOG0112|consensus
Probab=97.90 E-value=5.2e-06 Score=81.33 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=96.7
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.+.+||++||+..+++.+|+..|..+|.|.+|.|... -.||||.|.+...+..|.-.+.+..|..-.+.+.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4567799999999999999999999999999999988652 25999999999999999998998877655555544
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
... ...+.+.++|+.|+..+....|..
T Consensus 448 G~~-----------------------------------------------------kst~ttr~~sgglg~w~p~~~l~r 474 (975)
T KOG0112|consen 448 GQP-----------------------------------------------------KSTPTTRLQSGGLGPWSPVSRLNR 474 (975)
T ss_pred ccc-----------------------------------------------------ccccceeeccCCCCCCChHHHHHH
Confidence 311 123567899999999999999999
Q ss_pred HhhhcCCeeEEEEe
Q psy3343 247 HFKKCGPIASVTVA 260 (274)
Q Consensus 247 ~F~~fG~I~~v~v~ 260 (274)
.|..||.|..|.+-
T Consensus 475 ~fd~fGpir~Idy~ 488 (975)
T KOG0112|consen 475 EFDRFGPIRIIDYR 488 (975)
T ss_pred HhhccCcceeeecc
Confidence 99999999987653
No 104
>KOG1456|consensus
Probab=97.89 E-value=8.1e-05 Score=66.69 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=95.0
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEEec
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLEWAP 168 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~ 168 (274)
.....+.+|.|++|-..+++.+|-+..+.||.|..+...+.+..|.|+|++.+.|+.++..-.. ..+.|+.-.+.|+.
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 3445568999999999999999999999999999999988888999999999999998864322 34556665555543
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEE--EeCCCCCCCHHHHHH
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLY--IKNLNFNSTEDSIRR 246 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~NL~~~~tee~L~~ 246 (274)
.++.... .++...+...|. |-|--+.+|-+-|..
T Consensus 106 sq~i~R~--------------------------------------------g~es~~pN~VLl~TIlNp~YpItvDVly~ 141 (494)
T KOG1456|consen 106 SQCIERP--------------------------------------------GDESATPNKVLLFTILNPQYPITVDVLYT 141 (494)
T ss_pred hhhhccC--------------------------------------------CCCCCCCCeEEEEEeecCccccchhhhhh
Confidence 2211000 011122334444 455557889999999
Q ss_pred HhhhcCCeeEEEEecC
Q psy3343 247 HFKKCGPIASVTVARK 262 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~ 262 (274)
++.+.|+|.+|.|+++
T Consensus 142 Icnp~GkVlRIvIfkk 157 (494)
T KOG1456|consen 142 ICNPQGKVLRIVIFKK 157 (494)
T ss_pred hcCCCCceEEEEEEec
Confidence 9999999999999987
No 105
>KOG2193|consensus
Probab=97.88 E-value=4.2e-06 Score=75.77 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=87.2
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC-CeeCCeEEEEEEecCCCCccc
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGVFAEA 175 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~-~~~~g~~l~v~~a~~~~f~~~ 175 (274)
..+|++||.+.++..+|..+|...---.+-.+....||+||.+.+...|.+|++.++| ..+.|.++.+++...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k----- 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK----- 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH-----
Confidence 4689999999999999999997541111111111347999999999999999999999 5688999888876432
Q ss_pred ccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCee
Q psy3343 176 KEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIA 255 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~ 255 (274)
. ...+.+-|+|+|+..-++.|..+..+||.+.
T Consensus 77 -k-----------------------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve 108 (584)
T KOG2193|consen 77 -K-----------------------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVE 108 (584)
T ss_pred -H-----------------------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHh
Confidence 0 0124588999999999999999999999999
Q ss_pred EEEEe
Q psy3343 256 SVTVA 260 (274)
Q Consensus 256 ~v~v~ 260 (274)
.|..+
T Consensus 109 ~~eqv 113 (584)
T KOG2193|consen 109 NCEQV 113 (584)
T ss_pred Hhhhh
Confidence 98763
No 106
>KOG0126|consensus
Probab=97.85 E-value=3.8e-06 Score=68.13 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=37.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
.++-|||+|||+..|+-+|.-+|++||.|+.|.+++|++.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T 73 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT 73 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC
Confidence 3568999999999999999999999999999999999753
No 107
>KOG4206|consensus
Probab=97.82 E-value=6.8e-05 Score=62.95 Aligned_cols=75 Identities=28% Similarity=0.402 Sum_probs=67.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a 167 (274)
.+++..+|+.|||..++.+.+..+|.+|.....|++.+ -++.|||+|.+...|..|...|.+..+. ...+.|.++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 45678999999999999999999999999999999887 5689999999999999999999998887 677777765
No 108
>KOG0120|consensus
Probab=97.80 E-value=5e-05 Score=71.43 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=105.2
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccC-----------CC-eeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPF-----------GD-LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE 159 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~-----------G~-i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g 159 (274)
..+....++|+++|+.++++..-.+|..- |+ +..+.+...++|||++|.+.+.|..|+. +++.-+.|
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 45667899999999999999999988763 32 7788888888999999999999999996 89999999
Q ss_pred eEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCC
Q psy3343 160 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNS 239 (274)
Q Consensus 160 ~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~ 239 (274)
+++.+..-....-.+.....-.. +. .+... ..-.........+||+|||...
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~----~~-----------~~~~~-------------~~~t~~~~~~~ki~v~~lp~~l 301 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQ----LG-----------KVGLL-------------PASTDVPDSPNKIFVGGLPLYL 301 (500)
T ss_pred CCceecccccccCCccchhhhcc----cc-----------ccCCc-------------ccccCcccccchhhhccCcCcc
Confidence 98877543222000000000000 00 00000 0001123345689999999999
Q ss_pred CHHHHHHHhhhcCCeeEEEEecCCC-CCCCC
Q psy3343 240 TEDSIRRHFKKCGPIASVTVARKKD-PKSPG 269 (274)
Q Consensus 240 tee~L~~~F~~fG~I~~v~v~~~~~-~~~~g 269 (274)
++.+++++...||.+...+++.+.+ |.+.|
T Consensus 302 ~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg 332 (500)
T KOG0120|consen 302 TEDQVKELLDSFGPLKAFRLVKDSATGNSKG 332 (500)
T ss_pred CHHHHHHHHHhcccchhheeecccccccccc
Confidence 9999999999999999999999976 34444
No 109
>KOG4210|consensus
Probab=97.78 E-value=3.1e-05 Score=68.71 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=91.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCC-eeCCeEEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYT-KFKEVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~-~~~g~~l~v~~ 166 (274)
...+++|++++...+.+.+...++..+|......+.. .++++.+.|...+.+..|+. +.+. .+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCcc
Confidence 4679999999999999999999999999765555433 56899999999999999997 4553 44454443333
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceE-EEeCCCCCCCHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTL-YIKNLNFNSTEDSIR 245 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-fV~NL~~~~tee~L~ 245 (274)
..... ..... ... .....+..++ +|+||++.+++++|+
T Consensus 165 ~~~~~---~~~~n------~~~--------------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 165 NTRRG---LRPKN------KLS--------------------------------RLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred ccccc---ccccc------hhc--------------------------------ccccCccccceeecccccccchHHHh
Confidence 22110 00000 000 0011223344 499999999999999
Q ss_pred HHhhhcCCeeEEEEecCCCC
Q psy3343 246 RHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 246 ~~F~~fG~I~~v~v~~~~~~ 265 (274)
.+|.++|.|..++++.++..
T Consensus 204 ~~~~~~~~i~~~r~~~~~~s 223 (285)
T KOG4210|consen 204 EHFVSSGEITSVRLPTDEES 223 (285)
T ss_pred hhccCcCcceeeccCCCCCc
Confidence 99999999999999988753
No 110
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.73 E-value=5.3e-05 Score=65.07 Aligned_cols=43 Identities=40% Similarity=0.749 Sum_probs=38.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~-~~~~~g 269 (274)
.++|||+|||+.+|+++|.++|.+||.|..++|..++ .++..|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g 158 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRG 158 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCc
Confidence 6899999999999999999999999999999999996 455444
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.70 E-value=8.4e-05 Score=50.61 Aligned_cols=37 Identities=41% Similarity=0.663 Sum_probs=34.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 229 ~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~ 37 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT 37 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC
Confidence 4899999999999999999999999999999988765
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=9.9e-05 Score=48.50 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHH
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAF 149 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~ 149 (274)
+.|-|.+.|++..+ .+...|..||.|..+.++....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 56788999977654 55558999999999999977789999999999999985
No 113
>KOG4211|consensus
Probab=97.66 E-value=0.00044 Score=64.10 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=56.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeE-EEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGR-VLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
...+|-+++||+.+|++||.++|+..-.+.. |.++. ..|-|||+|++.+.|++|+.. +...|..|-|.|-.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 4588999999999999999999997654433 43443 236899999999999999974 6666777777776553
No 114
>KOG0106|consensus
Probab=97.66 E-value=3e-05 Score=65.40 Aligned_cols=73 Identities=29% Similarity=0.351 Sum_probs=65.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..+.+++.|.|++..+...+|.+.|.++|.+....+ ..+++||+|...++|..|+..|++..+.++.|.+...
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 567799999999999999999999999999855555 3468999999999999999999999999999999554
No 115
>KOG0113|consensus
Probab=97.61 E-value=8.5e-05 Score=64.71 Aligned_cols=45 Identities=40% Similarity=0.804 Sum_probs=40.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~-~~~~~g 269 (274)
.+-+||||.-|+++|+|..|+..|+.||+|..++|++++ .|++.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskG 144 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKG 144 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccc
Confidence 567899999999999999999999999999999999995 555555
No 116
>KOG3152|consensus
Probab=97.58 E-value=3.7e-05 Score=65.61 Aligned_cols=70 Identities=29% Similarity=0.492 Sum_probs=61.7
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---C--------Ce-------EEEEEecCHHHHHHHHHHhC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---Y--------GI-------TGLVEFLQKNQAKAAFNSLA 153 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---~--------~~-------~afV~F~~~~~A~~A~~~l~ 153 (274)
..+...+||++|||+.+...-|+++|+.||.|-+|.|-+ + ++ -|.|+|.+...|+.+...||
T Consensus 70 kkrk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 70 KKRKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred hhccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 445668999999999999999999999999999999976 1 11 28999999999999999999
Q ss_pred CCeeCCeE
Q psy3343 154 YTKFKEVP 161 (274)
Q Consensus 154 ~~~~~g~~ 161 (274)
+..|.|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99999864
No 117
>KOG0226|consensus
Probab=97.55 E-value=7.8e-05 Score=63.62 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=63.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....-+||++.|..+++.+-|-..|.+|-.-....+.+ ++||+||.|.++.++..|++.|+|..++.++|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568999999999999999999999986543333333 569999999999999999999999999999988764
Q ss_pred e
Q psy3343 167 A 167 (274)
Q Consensus 167 a 167 (274)
.
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 118
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.45 E-value=0.00031 Score=62.24 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=61.8
Q ss_pred CcEEEEeCCCCCCCHHH----H--HHccccCCCeeEEEeeCC-------Ce-E-EEEEecCHHHHHHHHHHhCCCeeCCe
Q psy3343 96 KRIILVKNLPYRTLPTD----L--KALFEPFGDLGRVLVPPY-------GI-T-GLVEFLQKNQAKAAFNSLAYTKFKEV 160 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~----l--~~~F~~~G~i~~v~l~~~-------~~-~-afV~F~~~~~A~~A~~~l~~~~~~g~ 160 (274)
..-+||-+||+.+..++ | .++|.+||.|..|.+.+. .+ + .||+|.+.++|..||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999999876666 2 379999999999998761 12 2 39999999999999999999999999
Q ss_pred EEEEEEecC
Q psy3343 161 PLYLEWAPE 169 (274)
Q Consensus 161 ~l~v~~a~~ 169 (274)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988753
No 119
>smart00360 RRM RNA recognition motif.
Probab=97.42 E-value=0.00022 Score=47.93 Aligned_cols=33 Identities=42% Similarity=0.619 Sum_probs=30.7
Q ss_pred EeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 232 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 232 V~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
|+|||..+++++|+++|++||.|..+.+..++.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~ 33 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD 33 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC
Confidence 679999999999999999999999999998764
No 120
>KOG0122|consensus
Probab=97.30 E-value=0.00032 Score=59.61 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=37.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
..++|-|.||+.++++++|.++|.+||.|.+|.|.+|+..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~T 227 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKET 227 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcccc
Confidence 4578999999999999999999999999999999999863
No 121
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.29 E-value=0.0011 Score=49.41 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=53.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEE-------------eeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVL-------------VPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVP 161 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-------------l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~ 161 (274)
+.+.|.|-+.|+. ....+.+.|++||.|.+.. .+..+++..|.|.++.+|.+|+. -||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567889999988 5667888999999998775 45566799999999999999997 6999999864
Q ss_pred -EEEEEe
Q psy3343 162 -LYLEWA 167 (274)
Q Consensus 162 -l~v~~a 167 (274)
+-|.|+
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 446665
No 122
>KOG1365|consensus
Probab=97.29 E-value=0.00092 Score=60.27 Aligned_cols=151 Identities=16% Similarity=0.225 Sum_probs=87.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccC----CCeeEEEeeC--CC---eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPF----GDLGRVLVPP--YG---ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~l~~--~~---~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...|-.++||++.++.|+.++|.+- |....|.+.. ++ |=|||.|..+++|..|+.. +...+.-| ||+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqR--YIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQR--YIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHH--HHHH
Confidence 3567778999999999999999742 2333444332 32 6799999999999999974 33223222 2221
Q ss_pred ecCCCCccccccccc--ccc--cccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHH
Q psy3343 167 APEGVFAEAKEKSKG--KEK--EKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTED 242 (274)
Q Consensus 167 a~~~~f~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee 242 (274)
. .....+-.. .+. ..+-.. . ... .-...-...........+|.+++||+..+.|
T Consensus 238 F-----RSTaaEvqqvlnr~~s~pLi~~----~-------~sp------~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvE 295 (508)
T KOG1365|consen 238 F-----RSTAAEVQQVLNREVSEPLIPG----L-------TSP------LLPGGPARLVPPTRSKDCVRLRGLPYEATVE 295 (508)
T ss_pred H-----HHhHHHHHHHHHhhccccccCC----C-------CCC------CCCCCccccCCCCCCCCeeEecCCChhhhHH
Confidence 1 111000000 000 000000 0 000 0000000001111224589999999999999
Q ss_pred HHHHHhhhcCC-eeE--EEEecCCCCCCCCCC
Q psy3343 243 SIRRHFKKCGP-IAS--VTVARKKDPKSPGQF 271 (274)
Q Consensus 243 ~L~~~F~~fG~-I~~--v~v~~~~~~~~~g~~ 271 (274)
+|.++|..|.. |.. |.++.+..|+..|+.
T Consensus 296 dIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeA 327 (508)
T KOG1365|consen 296 DILDFLGDFATDIRFQGVHMVLNGQGRPSGEA 327 (508)
T ss_pred HHHHHHHHHhhhcccceeEEEEcCCCCcChhh
Confidence 99999998865 555 889999999988874
No 123
>KOG4307|consensus
Probab=97.26 E-value=0.00088 Score=64.55 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=62.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCe-eEEEeeC-CC----eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVPP-YG----ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~l~~-~~----~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..++|-|.|+|+.++-+||.++|.-|-.+ .+|++.. +. |-|.|-|++.++|..|+..|+++.|..+.++|..
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 33699999999999999999999999766 5566655 22 5799999999999999999999999999998863
No 124
>KOG0115|consensus
Probab=97.23 E-value=0.00074 Score=57.81 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCeeCCeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccC
Q psy3343 143 NQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEER 222 (274)
Q Consensus 143 ~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (274)
.-|..|-..|.+....++.|.|.|+..
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------------------------------- 31 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------------------------------------------------- 31 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------------------------------------------------
Confidence 456777788999999999999999841
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g~~l 272 (274)
..|||.||+.-++.+.|.+-|+.||+|.+..+..|..++..|+-+
T Consensus 32 -----a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 32 -----AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred -----ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 479999999999999999999999999999999999888777643
No 125
>KOG1548|consensus
Probab=97.22 E-value=0.002 Score=57.38 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=63.1
Q ss_pred hhcCCCcEEEEeCCCC----CCC-------HHHHHHccccCCCeeEEEee--CCCeEEEEEecCHHHHHHHHHHhCCCee
Q psy3343 91 VEARSKRIILVKNLPY----RTL-------PTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQKNQAKAAFNSLAYTKF 157 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~----~~t-------e~~l~~~F~~~G~i~~v~l~--~~~~~afV~F~~~~~A~~A~~~l~~~~~ 157 (274)
...+..++|.++|+=. ..+ .++|.+-.++||.|.+|.+. ...|.+-|.|.+.++|..|++.|+|..|
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3456779999999843 233 45666778999999999886 3568999999999999999999999999
Q ss_pred CCeEEEEEEe
Q psy3343 158 KEVPLYLEWA 167 (274)
Q Consensus 158 ~g~~l~v~~a 167 (274)
.||.|.....
T Consensus 340 dgRql~A~i~ 349 (382)
T KOG1548|consen 340 DGRQLTASIW 349 (382)
T ss_pred cceEEEEEEe
Confidence 9999887744
No 126
>KOG0125|consensus
Probab=97.18 E-value=0.00058 Score=60.39 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=38.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~ 267 (274)
.....+|+|.||||...|-||+.+|++||+|.+|.|+.+..|.+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSK 136 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSK 136 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCC
Confidence 33456999999999999999999999999999999998876643
No 127
>KOG4210|consensus
Probab=97.02 E-value=0.00043 Score=61.49 Aligned_cols=73 Identities=27% Similarity=0.314 Sum_probs=64.2
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
+..+|+||++.+++++|+..|..+|.|..++++.. .+||+|.|.....+..++.. +...+.++++.+++....
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 44449999999999999999999999999999872 47999999999999999986 788899999999987543
No 128
>KOG1365|consensus
Probab=97.00 E-value=0.006 Score=55.15 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=94.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccC----CCeeEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPF----GDLGRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..++..|-.++||+..+..+|-.+|.-. |-+.-|.... -.|.|.|.|.+++.-..|++. +...+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 3456778888999999999999999753 2222221111 236899999999999999874 55556677777766
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
+....|..-......+.... ........|..++|||++|+.++.+
T Consensus 136 a~ge~f~~iagg~s~e~~~f-----------------------------------lsk~~qvivRmRGLPfdat~~dVv~ 180 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPF-----------------------------------LSKENQVIVRMRGLPFDATALDVVE 180 (508)
T ss_pred cCchhheEecCCccccCCCC-----------------------------------CCcccceEEEecCCCCCcchHHHHH
Confidence 64442222111111000000 0111234788899999999999999
Q ss_pred Hhhhc----CCeeEEEEecCCCCCCCCCC
Q psy3343 247 HFKKC----GPIASVTVARKKDPKSPGQF 271 (274)
Q Consensus 247 ~F~~f----G~I~~v~v~~~~~~~~~g~~ 271 (274)
+|.+- |....+-.++.+||+..|..
T Consensus 181 FF~~~cpv~~g~egvLFV~rpdgrpTGdA 209 (508)
T KOG1365|consen 181 FFGPPCPVTGGTEGVLFVTRPDGRPTGDA 209 (508)
T ss_pred hcCCCCcccCCccceEEEECCCCCcccce
Confidence 99632 46678888899999988864
No 129
>KOG0153|consensus
Probab=96.88 E-value=0.0014 Score=58.44 Aligned_cols=43 Identities=37% Similarity=0.500 Sum_probs=37.3
Q ss_pred cCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 221 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 221 ~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
.++...-++|||++|...+++.+|+++|-+||+|.++++...+
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~ 264 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK 264 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc
Confidence 3344556799999999999999999999999999999998654
No 130
>KOG0533|consensus
Probab=96.82 E-value=0.0017 Score=56.03 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=39.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
.+.|+|.|||+.|++++|+++|..||.+..+-|-.+++|.+.|
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~G 125 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLG 125 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCc
Confidence 3789999999999999999999999999999999999987765
No 131
>KOG2314|consensus
Probab=96.80 E-value=0.0025 Score=60.13 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=56.5
Q ss_pred CcEEEEeCCCCCC------CHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeC-CeEEE
Q psy3343 96 KRIILVKNLPYRT------LPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLY 163 (274)
Q Consensus 96 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~ 163 (274)
.+.|+|-|+|--- -..-|..+|+++|+|..+.+|. .+||.|++|.+..+|+.|++.|+|..|+ .+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4789999998521 1234667999999999999986 3589999999999999999999999887 45555
Q ss_pred EE
Q psy3343 164 LE 165 (274)
Q Consensus 164 v~ 165 (274)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 54
No 132
>KOG0108|consensus
Probab=96.80 E-value=0.0014 Score=61.31 Aligned_cols=38 Identities=16% Similarity=0.531 Sum_probs=36.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
+.|||+|+|+++++++|..+|+..|.|.+++++-|+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t 56 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET 56 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC
Confidence 89999999999999999999999999999999999864
No 133
>KOG2202|consensus
Probab=96.72 E-value=0.00067 Score=58.11 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=50.3
Q ss_pred HHHHHccc-cCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 111 TDLKALFE-PFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 111 ~~l~~~F~-~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
+++...|+ +||.|..+.+..+ .|-++|.|...++|.+|+..||+..|.|++|+.++.+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 34445555 8999999877663 367999999999999999999999999999999998743
No 134
>KOG4207|consensus
Probab=96.61 E-value=0.0027 Score=52.86 Aligned_cols=42 Identities=29% Similarity=0.558 Sum_probs=38.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~ 267 (274)
.-++|.|-||-+.||.++|+.+|++||.|-.|.|++|+..+.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~ 53 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQ 53 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceeccccccccc
Confidence 346999999999999999999999999999999999987653
No 135
>KOG1855|consensus
Probab=96.57 E-value=0.0022 Score=58.64 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=54.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-------------------CeEEEEEecCHHHHHHHHHHhC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-------------------GITGLVEFLQKNQAKAAFNSLA 153 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-------------------~~~afV~F~~~~~A~~A~~~l~ 153 (274)
....++|.+-|||.+-.-+-|.++|+.+|.|..|+|... +-+|+|+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346799999999999988999999999999999999652 1379999999999999999775
Q ss_pred C
Q psy3343 154 Y 154 (274)
Q Consensus 154 ~ 154 (274)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 136
>KOG0415|consensus
Probab=96.52 E-value=0.0027 Score=56.80 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=38.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+|...|||=-|++-||+++|.-+|+.||.|.+|.|++|..
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k 276 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK 276 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc
Confidence 456778999999999999999999999999999999999875
No 137
>KOG0116|consensus
Probab=96.42 E-value=0.0034 Score=58.45 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=34.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..+|||+|||++++..+|+++|.+||.|....|....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~ 324 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS 324 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec
Confidence 4469999999999999999999999999999998765
No 138
>KOG1995|consensus
Probab=96.38 E-value=0.0031 Score=56.48 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=64.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE--------EEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR--------VLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFK 158 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~ 158 (274)
.....+|||-+||..+++.+|..+|.++|.|.. |.|-+ .++-|.|.|.++..|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455689999999999999999999999997722 11211 3478999999999999999999999999
Q ss_pred CeEEEEEEecCC
Q psy3343 159 EVPLYLEWAPEG 170 (274)
Q Consensus 159 g~~l~v~~a~~~ 170 (274)
+.+|.|..|...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999888777533
No 139
>KOG0105|consensus
Probab=96.38 E-value=0.011 Score=48.46 Aligned_cols=75 Identities=31% Similarity=0.367 Sum_probs=64.1
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeC--CeEEEEEE
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK--EVPLYLEW 166 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~ 166 (274)
+..++.-.|.|.+||++.+-+||+++...-|.|+...+-+++ ++.|+|...++-+-|+..|....+. |-..++..
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 456777899999999999999999999999999988887774 8999999999999999999987765 44444443
No 140
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.32 E-value=0.032 Score=39.86 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=42.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY 154 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~ 154 (274)
....+|. +|......||.++|+.||.|.-- .. +-..|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi-~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WI-NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEE-EE-CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEE-EE-cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4667776 99999999999999999987433 33 345899999999999999998864
No 141
>KOG0112|consensus
Probab=96.24 E-value=0.0048 Score=61.17 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=68.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEEec
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAP 168 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~ 168 (274)
...+.+|+++|+.++....|...|..||.|..|.+.....||+|.|.+...|+.|++.|-|..|.+ +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 345899999999999999999999999999998887766799999999999999999999999986 678998885
No 142
>KOG0151|consensus
Probab=96.15 E-value=0.0052 Score=59.52 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=36.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 222 ~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
...+.+++|||+||++.++++.|...|..||+|.+++|+.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimw 208 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMW 208 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeec
Confidence 4456788999999999999999999999999999999985
No 143
>KOG0130|consensus
Probab=96.03 E-value=0.0077 Score=46.89 Aligned_cols=42 Identities=14% Similarity=0.346 Sum_probs=37.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
....+..|||.++...+|++++.+.|..||+|..+.+-.|+.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR 109 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR 109 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc
Confidence 345678999999999999999999999999999999987753
No 144
>KOG1996|consensus
Probab=95.95 E-value=0.019 Score=50.33 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=55.8
Q ss_pred CcEEEEeCCC--CCCC---HHHHHHccccCCCeeEEEeeCC------C-eEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 96 KRIILVKNLP--YRTL---PTDLKALFEPFGDLGRVLVPPY------G-ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 96 ~~~l~V~nLp--~~~t---e~~l~~~F~~~G~i~~v~l~~~------~-~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
+.+|+++|.= -.++ ++++.+-+.+||.|..|.|... . .-.||+|...++|.+|+-.|||..|.||.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 3445555542 2233 4578889999999999887541 1 2479999999999999999999999999988
Q ss_pred EEEec
Q psy3343 164 LEWAP 168 (274)
Q Consensus 164 v~~a~ 168 (274)
..|-.
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 77653
No 145
>KOG4307|consensus
Probab=95.88 E-value=0.038 Score=53.66 Aligned_cols=163 Identities=11% Similarity=-0.002 Sum_probs=92.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccC-CCeeEEEee---CC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPF-GDLGRVLVP---PY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~l~---~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
..+.+-+++.+++....|++++|... -.-..+... +. .|-++|.|....++.+|+.. +...+..|.+.+..+-.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 44667778999999999999999642 221222222 22 37899999999999999974 55666777777754432
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhh
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 249 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~ 249 (274)
.-|................ ...+..... ...+.-.......-...+.+|||+.||+.+++..+.+.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~-----------~~hg~p~~~-pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~ 456 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQ-----------NNHGRPIAP-PRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFM 456 (944)
T ss_pred cccccCccccccCCCCccc-----------ccCCCCCCC-cccccCCCCCCCCCCCccceEEeccCCccccccchhhhhh
Confidence 2111110000000000000 000000000 0000000000011223466999999999999999999998
Q ss_pred hcCCeeE-EEEecCCCCCCCCC
Q psy3343 250 KCGPIAS-VTVARKKDPKSPGQ 270 (274)
Q Consensus 250 ~fG~I~~-v~v~~~~~~~~~g~ 270 (274)
..-.|+. |.|..-++++..+.
T Consensus 457 ~~~~Ved~I~lt~~P~~~~~~~ 478 (944)
T KOG4307|consen 457 GAAAVEDFIELTRLPTDLLRPA 478 (944)
T ss_pred hhhhhhheeEeccCCcccccch
Confidence 7767766 77777777665544
No 146
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.79 E-value=0.022 Score=44.80 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=56.9
Q ss_pred hcCCCcEEEEeCCCCCC----CHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRT----LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~----te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...+-.+|.|+=|..++ +-..+...++.||+|.+|.+. .+..|.|.|.+..+|-+|+.++.. ..-|..+++.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34555788887665554 333455667889999999764 556899999999999999998765 667888899886
Q ss_pred c
Q psy3343 168 P 168 (274)
Q Consensus 168 ~ 168 (274)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 147
>KOG0132|consensus
Probab=95.75 E-value=0.0084 Score=58.70 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
.++||||+.|+..+++++|..+|+.||.|.+|.+.-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~ 455 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP 455 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc
Confidence 467999999999999999999999999999998753
No 148
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.71 E-value=0.041 Score=45.39 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=51.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHcccc-CCCe---eEEE--eeC--C----CeEEEEEecCHHHHHHHHHHhCCCeeCC--
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEP-FGDL---GRVL--VPP--Y----GITGLVEFLQKNQAKAAFNSLAYTKFKE-- 159 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~--l~~--~----~~~afV~F~~~~~A~~A~~~l~~~~~~g-- 159 (274)
.....|.|++||+++|++++.+.++. ++.- ..+. ... . -.-|||.|.+.+++..-...++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34578999999999999999998887 6655 3333 111 0 1369999999999999999999977643
Q ss_pred ---eEEEEEEecCCCC
Q psy3343 160 ---VPLYLEWAPEGVF 172 (274)
Q Consensus 160 ---~~l~v~~a~~~~f 172 (274)
.+-.|++|+-..+
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 3568899976643
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.67 E-value=0.013 Score=44.18 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
|+.|+|.+++..++.++|+++|++||.|.+|.+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G 36 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG 36 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC
Confidence 468999999999999999999999999999988753
No 150
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.60 E-value=0.062 Score=42.66 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=51.3
Q ss_pred cCCCcEEEEeCCCC-----CCCH----HHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 93 ARSKRIILVKNLPY-----RTLP----TDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~-----~~te----~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
.++..+|.|.=+.+ ..-. .+|.+.|..||.+.-+++.. +.-+|+|.+-++|-+|+. ++|..+.|+.|.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 34456666664441 1222 36778899999987777764 367999999999999997 999999999999
Q ss_pred EEEecCC
Q psy3343 164 LEWAPEG 170 (274)
Q Consensus 164 v~~a~~~ 170 (274)
|..-.+.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9865433
No 151
>KOG2416|consensus
Probab=94.96 E-value=0.021 Score=54.45 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=63.5
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHcccc-CCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCee---CCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEP-FGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKF---KEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~---~g~~l~v~~a 167 (274)
-....++|+|.||---.|.-+|+.++.+ .|.|....|.+-+..|||.|.+.++|.....+|+|... +++.|.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 3455699999999888999999999995 55566665555567899999999999999999999765 4577888887
Q ss_pred c
Q psy3343 168 P 168 (274)
Q Consensus 168 ~ 168 (274)
.
T Consensus 520 ~ 520 (718)
T KOG2416|consen 520 R 520 (718)
T ss_pred c
Confidence 5
No 152
>KOG0129|consensus
Probab=94.84 E-value=0.061 Score=50.59 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=51.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccc-cCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHH
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFE-PFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNS 151 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~ 151 (274)
..+|||||+||--++.++|-.+|. -||.|..+-|..+ +|-|-|.|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 458999999999999999999999 7999998888764 57899999999999999974
No 153
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.68 E-value=0.15 Score=34.50 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=43.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccC----CCeeEEEeeCCCeEEEEEecCHHHHHHHHHHh
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPF----GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL 152 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l 152 (274)
...|+|+++. +++.++|+.+|..| + ..+|.+.-+ .-|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 4679999996 58999999999999 4 456666543 46889999999999999764
No 154
>KOG4660|consensus
Probab=94.44 E-value=0.036 Score=52.48 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+..+|+|-|||..+++++|+.+|+.||+|+-|+-...++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~ 112 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR 112 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC
Confidence 34567999999999999999999999999999977555444
No 155
>KOG4285|consensus
Probab=94.22 E-value=0.17 Score=44.69 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeE-EEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVP-LYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~-l~v~~a~~ 169 (274)
..-|-|-++|+.-. .-|..+|++||.|........+.+-+|.|.+.-+|++|+. -+|+.|.|.. |-|..+.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 46677788988654 4566799999999999888888899999999999999997 5999988754 45555443
No 156
>KOG4661|consensus
Probab=94.19 E-value=0.077 Score=50.55 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=39.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQ 270 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g~ 270 (274)
...-+++|+|.+|...|.-.+|+.+|++||+|+-++|+++. ++||.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa--RsPGa 446 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA--RSPGA 446 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecC--CCCCc
Confidence 34557799999999999999999999999999999999864 45664
No 157
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.19 E-value=0.16 Score=42.19 Aligned_cols=61 Identities=18% Similarity=0.058 Sum_probs=47.0
Q ss_pred CHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhC--CCeeCCeEEEEEEecC
Q psy3343 109 LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA--YTKFKEVPLYLEWAPE 169 (274)
Q Consensus 109 te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~ 169 (274)
....|+.+|..|+.+......++-+=..|.|.+.++|..|...|+ +..+.|..+.|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 357899999999999888777765668999999999999999999 9999999999998843
No 158
>KOG4849|consensus
Probab=94.01 E-value=0.042 Score=49.29 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=56.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCC--eeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGD--LGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.-.+||+||-|.+|.+||.+.....|- +..+++-. ++|||+|...+..+.++-++.|-.+.|+|..-.|-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 467899999999999999998887774 33333322 57999999999999999999999999999764443
No 159
>KOG2135|consensus
Probab=93.52 E-value=0.042 Score=51.15 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 95 SKRIILVKNLPYRT-LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 95 ~~~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..+.|-+.-.|+.. +.++|...|.+||.|..|.+...--.|.|+|.+..+|-.|.. ..+..|+++.|+|-|....
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34555555566653 678999999999999999987654579999999999988885 7999999999999998653
No 160
>KOG2591|consensus
Probab=93.22 E-value=0.14 Score=48.61 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=56.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHcccc--CCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEP--FGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLE 165 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~ 165 (274)
...+.|+++-||..+-.++++.||.. +-.+.+|.+..+.+ =||+|++..||+.|++.|.. ..|.|++|...
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 34588999999999999999999985 56677887765322 48999999999999988865 56777776443
No 161
>KOG1855|consensus
Probab=93.08 E-value=0.12 Score=47.65 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=36.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
+..++++|.+.|||.+-.-+-|.++|+.||.|.+|+|+.-
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 3457899999999999999999999999999999999865
No 162
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.00 E-value=0.78 Score=34.79 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccC-CCeeEEEeeCCC----eEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPF-GDLGRVLVPPYG----ITGLVEFLQKNQAKAAFNSLAYTKFKE 159 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~l~~~~----~~afV~F~~~~~A~~A~~~l~~~~~~g 159 (274)
....+.+...|+.++.++|..+.+.+ ..|..++|.+++ -.+++.|.+..+|..-...+||+.|..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444555556666776666655 346788887754 378999999999999999999998864
No 163
>KOG0115|consensus
Probab=92.07 E-value=0.15 Score=43.96 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=54.1
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-C----CeEEEEEecCHHHHHHHHHHhCCCe----eCCeEEEEE
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-Y----GITGLVEFLQKNQAKAAFNSLAYTK----FKEVPLYLE 165 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~----~~~afV~F~~~~~A~~A~~~l~~~~----~~g~~l~v~ 165 (274)
..|||.||+..+..+.+..-|+.||+|.+-.+.. + .+-++|+|...-.|.+|...+.-.- ..+++.-|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7899999999999999999999999996655543 2 2568999999999999998774322 334554444
No 164
>KOG4209|consensus
Probab=91.97 E-value=0.13 Score=44.40 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=38.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~ 266 (274)
......+||+|+.+.+|.+++..+|+.||.|..+.|..++...
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~ 140 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG 140 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC
Confidence 3445799999999999999999999999999999999998753
No 165
>KOG0128|consensus
Probab=91.87 E-value=0.066 Score=53.14 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...++|.|.|+..|.++++.+++.+|.+.+++++. .+|.|+|.|.++.+|..+........++...+.|..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 57899999999999999999999999999988766 358999999999999999877777666665555544
No 166
>KOG0226|consensus
Probab=91.78 E-value=0.12 Score=44.58 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=78.8
Q ss_pred EEEEeCCCCCCCHHH-H--HHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 98 IILVKNLPYRTLPTD-L--KALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 98 ~l~V~nLp~~~te~~-l--~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
..++.|+-..+..+- | ...|+.|-.+....+.++ .+++|+.|.....-.++-..-+++.+.-+++++.-+..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 344555544444333 2 455665554444333332 36899999887777777665566666666555443322
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhh
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 249 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~ 249 (274)
. .. .. + .+-.....+||++.|..+++++-|-..|.
T Consensus 178 w------ed-----Ps-l---------------------------------~ew~~~DfRIfcgdlgNevnd~vl~raf~ 212 (290)
T KOG0226|consen 178 W------ED-----PS-L---------------------------------AEWDEDDFRIFCGDLGNEVNDDVLARAFK 212 (290)
T ss_pred c------CC-----cc-c---------------------------------ccCccccceeecccccccccHHHHHHHHH
Confidence 1 00 00 0 00112236899999999999999999999
Q ss_pred hcCCeeEEEEecCC-CCCCCC
Q psy3343 250 KCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 250 ~fG~I~~v~v~~~~-~~~~~g 269 (274)
+|.....++|++++ .+++.|
T Consensus 213 Kfpsf~~akviRdkRTgKSkg 233 (290)
T KOG0226|consen 213 KFPSFQKAKVIRDKRTGKSKG 233 (290)
T ss_pred hccchhhcccccccccccccc
Confidence 99999999999986 444444
No 167
>KOG2318|consensus
Probab=91.38 E-value=1.1 Score=42.95 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=64.1
Q ss_pred hcCCCcEEEEeCCCCC-CCHHHHHHccccC----CCeeEEEeeCC-------------C---------------------
Q psy3343 92 EARSKRIILVKNLPYR-TLPTDLKALFEPF----GDLGRVLVPPY-------------G--------------------- 132 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~l~~~-------------~--------------------- 132 (274)
.....++|-|-|+.|. +...+|.-+|+.| |.|.+|.|.++ |
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3556689999999997 8899999998876 68999988541 0
Q ss_pred -------------------eEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEEecCC
Q psy3343 133 -------------------ITGLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEG 170 (274)
Q Consensus 133 -------------------~~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~ 170 (274)
-||.|+|.+.+.|...+....|..|.. ..|-+.|.|..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 179999999999999999999999974 45666677654
No 168
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=90.87 E-value=0.26 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=17.1
Q ss_pred HHHHhhhcCCeeEEEEecCC
Q psy3343 244 IRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 244 L~~~F~~fG~I~~v~v~~~~ 263 (274)
|+++|++||+|..+.+..++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~ 20 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK 20 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS
T ss_pred ChHHhCCcccEEEEEEEeCC
Confidence 78999999999999998766
No 169
>KOG4574|consensus
Probab=90.71 E-value=0.13 Score=51.08 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=62.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCee--CCeEEEEEEecC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKF--KEVPLYLEWAPE 169 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~ 169 (274)
...++.|.+-+.+..-|..+|+.||.+.+.+..++-..|.|+|...+.|..|.++|+|+.+ -|-|-+|.+|..
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455667777888999999999999999999988778999999999999999999999875 477888888753
No 170
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.48 E-value=1.6 Score=30.45 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=35.9
Q ss_pred CCCCHHHHHHccccCCC-----eeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 106 YRTLPTDLKALFEPFGD-----LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 106 ~~~te~~l~~~F~~~G~-----i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..++..+|..++...+. |-.|.+.. .|+||+-.. +.|..++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888887654 45666654 489998875 4788899999999999999999865
No 171
>KOG3152|consensus
Probab=90.47 E-value=0.36 Score=41.66 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=35.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
.-.||+.|||+.+....|+++|++||.|=.|.+....+.
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 348999999999999999999999999999998876554
No 172
>KOG2068|consensus
Probab=90.29 E-value=0.12 Score=46.27 Aligned_cols=72 Identities=11% Similarity=0.210 Sum_probs=56.8
Q ss_pred cEEEEeCCCCCCCHHH-HH--HccccCCCeeEEEeeCCC---------eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 97 RIILVKNLPYRTLPTD-LK--ALFEPFGDLGRVLVPPYG---------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~-l~--~~F~~~G~i~~v~l~~~~---------~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
.-+||-+||.....++ |. +.|.+||.|..|.+..+. .-++|+|...++|..||...+|..++|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 5567778887754444 43 589999999999886621 24899999999999999999999999988766
Q ss_pred EEec
Q psy3343 165 EWAP 168 (274)
Q Consensus 165 ~~a~ 168 (274)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6654
No 173
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.07 E-value=1.5 Score=29.98 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=44.2
Q ss_pred CCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 107 RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 107 ~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
.++-++++..+..|+ ..+|+..++ --||.|.+..+|++++...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~t--GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRT--GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCC--EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 377889999999998 445554433 3589999999999999999999988877664
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=88.50 E-value=0.71 Score=30.06 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
+.|-|.+.+.+..+ .+..+|.+||+|..+.+.
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC
Confidence 46778888877654 455599999999998887
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.83 E-value=4.5 Score=29.34 Aligned_cols=81 Identities=10% Similarity=0.139 Sum_probs=49.9
Q ss_pred EEEEecCHHHHHHHHHHhCC-CeeCCeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCccc
Q psy3343 135 GLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVE 213 (274)
Q Consensus 135 afV~F~~~~~A~~A~~~l~~-~~~~g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (274)
|+|+|.++.-|..-++.-.. ..+.+..+.|.-.|...... . + +
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~---~-k--------------------~------------ 44 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL---Q-K--------------------F------------ 44 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc---e-E--------------------E------------
Confidence 68999999999998873222 33556666665544221000 0 0 0
Q ss_pred ccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 214 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 214 ~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+-......++|-|.|||...++++|++. ..+...+..|
T Consensus 45 ------qv~~~vs~rtVlvsgip~~l~ee~l~D~-------LeIhFqK~sn 82 (88)
T PF07292_consen 45 ------QVFSGVSKRTVLVSGIPDVLDEEELRDK-------LEIHFQKPSN 82 (88)
T ss_pred ------EEEEcccCCEEEEeCCCCCCChhhheee-------EEEEEecCCC
Confidence 0011234579999999999999999976 4445555554
No 176
>KOG0804|consensus
Probab=85.88 E-value=1.9 Score=40.23 Aligned_cols=66 Identities=15% Similarity=0.297 Sum_probs=57.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccC-CCeeEEEeeCCC----eEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPF-GDLGRVLVPPYG----ITGLVEFLQKNQAKAAFNSLAYTKFKE 159 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~l~~~~----~~afV~F~~~~~A~~A~~~l~~~~~~g 159 (274)
.+++.|+|-.+|..++-.||-.+...+ -.|..+++.+++ -..++.|.+..+|..-+..+||..|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 347999999999999999999998866 447888888754 368999999999999999999998874
No 177
>smart00361 RRM_1 RNA recognition motif.
Probab=85.83 E-value=0.95 Score=30.98 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHHHHhh----hcCCeeEEE-EecCCC
Q psy3343 241 EDSIRRHFK----KCGPIASVT-VARKKD 264 (274)
Q Consensus 241 ee~L~~~F~----~fG~I~~v~-v~~~~~ 264 (274)
+++|+++|+ +||.|.++. |..+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~ 30 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNV 30 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCC
Confidence 578999998 999999996 666654
No 178
>KOG4208|consensus
Probab=83.01 E-value=2.4 Score=35.55 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=36.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhc-CCeeEEEEecCC-CCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKC-GPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~f-G~I~~v~v~~~~-~~~~~g 269 (274)
.......+||..+|+.+.+.++..+|.+| |.|..+++.|.+ .|.+.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKg 93 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKG 93 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCc
Confidence 44455689999999999999999999999 778888886654 444443
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=82.95 E-value=1.6 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=19.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCee
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIA 255 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~ 255 (274)
...+|. .|..+-..+|.++|++||.|.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~ 36 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY 36 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE
Confidence 366666 899999999999999999975
No 180
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=78.08 E-value=5.4 Score=29.50 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhh--cCCeeEEEEecCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKK--CGPIASVTVARKKD 264 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~--fG~I~~v~v~~~~~ 264 (274)
+||-|+|||...|.++|.+++.. .|....+.++.|-.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~ 40 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK 40 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc
Confidence 68999999999999999999864 47778888888753
No 181
>KOG2253|consensus
Probab=76.82 E-value=1.4 Score=42.96 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=59.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
....-++||+|+.+.+..+-++.+...+|-|.++.... |||.+|........|+..+.-..++|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34558899999999999999999999999887765543 99999999999999999888888888776554
No 182
>KOG4676|consensus
Probab=70.36 E-value=0.74 Score=42.15 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=52.0
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFK 158 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~ 158 (274)
++++|++|+..+...++-+.|..+|.+....+.. ...+|-++|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 7899999999999999999999999987777654 34688899999999999997 5776655
No 183
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.05 E-value=7.9 Score=34.31 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=57.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC-------------eEEEEEecCHHHHHHH----HHHhCC--C
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-------------ITGLVEFLQKNQAKAA----FNSLAY--T 155 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~-------------~~afV~F~~~~~A~~A----~~~l~~--~ 155 (274)
..+.|...|+..+++-..+-..|.+||+|++|.+..+. ....+.|-+.+.+-.- ++.|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999998744 4788999998886543 333333 3
Q ss_pred eeCCeEEEEEEec
Q psy3343 156 KFKEVPLYLEWAP 168 (274)
Q Consensus 156 ~~~g~~l~v~~a~ 168 (274)
.++...|.+.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4667777777764
No 184
>KOG2193|consensus
Probab=65.51 E-value=0.27 Score=45.40 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CC--eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YG--ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~--~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..+.+-|+|+|+..-.+-|..|...||.+..|.... +. ...-|+|...+.++.|+..|+|..+....+.+.|.|..
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 346689999999999999999999999998775533 21 23346888999999999999999999999999998755
No 185
>KOG4019|consensus
Probab=65.32 E-value=6.2 Score=32.53 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCCC--C---HHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEEEEecC
Q psy3343 96 KRIILVKNLPYRT--L---PTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEV-PLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~--t---e~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~v~~a~~ 169 (274)
.+.+.+.+++..+ + ......+|.+|-...-.++.++.+...|.|.+++.|..|...+++..|.|. .+.+-++..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 3667788887764 2 223456777777666666666767788999999999999999999999988 777777764
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 186
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=62.41 E-value=5.1 Score=31.55 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=65.6
Q ss_pred HHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCccccccccccccccccc
Q psy3343 110 PTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEE 189 (274)
Q Consensus 110 e~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~ 189 (274)
...+..++...|.+.-..+ ..++..+.|.+.+++..++. .....+.+..+.+..-.+. .... .
T Consensus 35 ~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~-----~~~~--------~- 97 (153)
T PF14111_consen 35 EQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPD-----FNPS--------E- 97 (153)
T ss_pred HHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccc-----cccc--------c-
Confidence 3344445555554433333 56799999999999999886 3445566766666533211 0000 0
Q ss_pred ccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 190 GEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~-~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..-.....=|-|.|||.. .+++-|+.+-+.+|.+..+...+.
T Consensus 98 -------------------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 -------------------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred -------------------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 000011245778899987 688999999999999999875543
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.25 E-value=7.8 Score=34.36 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=36.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+++|.+.|+..+++--.+...|-+||+|.+|.++.+.+
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~ 52 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSND 52 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCC
Confidence 4567999999999999999999999999999999998874
No 188
>KOG4483|consensus
Probab=58.61 E-value=15 Score=34.04 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCe-eEEEeeCCCeEEEEEecCHHHHHHHHH
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVPPYGITGLVEFLQKNQAKAAFN 150 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~l~~~~~~afV~F~~~~~A~~A~~ 150 (274)
-.++|-|-++|.....+||...|+.||.- ..|.++ +...||-.|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhh
Confidence 45899999999999999999999999753 555555 45689999999999999986
No 189
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.17 E-value=8.9 Score=34.67 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCceEEEeCCCCCCCHHH------HHHHhhhcCCeeEEEEecCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDS------IRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~------L~~~F~~fG~I~~v~v~~~~ 263 (274)
.+..-+||-+||+.+-+|+ =.++|.+||.|..|.|-++.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt 156 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT 156 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc
Confidence 3445789999999987776 35789999999999876554
No 190
>KOG4410|consensus
Probab=56.19 E-value=12 Score=33.02 Aligned_cols=48 Identities=15% Similarity=-0.042 Sum_probs=38.1
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCe-eEEEeeCCCeEEEEEecCHHH
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVPPYGITGLVEFLQKNQ 144 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~l~~~~~~afV~F~~~~~ 144 (274)
+-|+++|||.++.-.||+..+.+-|-+ .++.+.-..+-||++|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 679999999999999999998887754 555554445679999987543
No 191
>KOG1995|consensus
Probab=52.13 E-value=11 Score=34.30 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~ 256 (274)
....+|||-+||..++..+|.++|.++|.|..
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr 95 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKR 95 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceecc
Confidence 34569999999999999999999999986643
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=51.65 E-value=79 Score=28.20 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=49.6
Q ss_pred ccChhHHHHHHHHHhCCCccc-ccC---CchhHHHhhhhhh----------hHHHHHHHHHHHCCC--Cccccch--hhh
Q psy3343 31 FLGTNAIAEAMAETYNATKAE-VLT---GSGAATRLAMGET----------EIVEKTRAFLEENGV--QLDAFNQ--VVE 92 (274)
Q Consensus 31 f~~~~~v~~~~~~~~~~~~~~-l~~---~~~~avr~al~e~----------~~~~~~~~~l~~~g~--~~~~~~~--~~~ 92 (274)
|+.+..+++.+.+..++...+ ++| |.....+..+... ..+...++.+...+. ++..... ...
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 777888999999988887654 567 3333322222111 234444444444331 1110000 001
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHcccc
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEP 119 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~ 119 (274)
......+.|.|||+.++...|..++..
T Consensus 98 ~~~~~d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 98 EFPYFDVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred cccccCEEEecCCcccCcHHHHHHHhc
Confidence 111234778999999999999888864
No 193
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.91 E-value=14 Score=26.75 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.0
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccc
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFE 118 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~ 118 (274)
...+.++|.|.|||..+.+++|++..+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 356789999999999999999997654
No 194
>KOG4849|consensus
Probab=47.45 E-value=11 Score=34.21 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=29.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCC--eeEEEEecCC-CCCCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGP--IASVTVARKK-DPKSPG 269 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~--I~~v~v~~~~-~~~~~g 269 (274)
.++||+||-|-+|+++|.+.....|- |..+++.-++ ||.+.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG 125 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKG 125 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccc
Confidence 48999999999999999998877663 3334443332 444443
No 195
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=45.59 E-value=69 Score=21.99 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHccccCCCeeEEEeeCC--CeEEEEEecCHHHHHHHHHHhC
Q psy3343 111 TDLKALFEPFGDLGRVLVPPY--GITGLVEFLQKNQAKAAFNSLA 153 (274)
Q Consensus 111 ~~l~~~F~~~G~i~~v~l~~~--~~~afV~F~~~~~A~~A~~~l~ 153 (274)
.++.+....+| +....+.-+ |++.|+-+.+.+.+..+.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 666777776 7899999989999888887653
No 196
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=44.25 E-value=25 Score=26.06 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEE
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVT 258 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~ 258 (274)
+.|.|-+.|... -..+.++|++||.|....
T Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 7 TWVTVFGFPPSA-SNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp CEEEEE---GGG-HHHHHHHHHCCS-EECEE
T ss_pred eEEEEEccCHHH-HHHHHHHHHhcceEEEee
Confidence 568888888884 567778999999998775
No 197
>KOG2295|consensus
Probab=41.89 E-value=5 Score=38.56 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPL 162 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l 162 (274)
.+.+|+.|++++++-++|..+++.+--..++.+... ..+++|+|.-.-.-..|..+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 378999999999999999999999876666666441 2478999998888888888889887765443
No 198
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.67 E-value=32 Score=23.17 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=15.6
Q ss_pred HHHHHHhhhcCCeeEEEEe
Q psy3343 242 DSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 242 e~L~~~F~~fG~I~~v~v~ 260 (274)
++||+.|++.|.|.-+-|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998766553
No 199
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.16 E-value=31 Score=23.63 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCCccccchhhhcCCCcEEEEeCCCCCCCHHHHHHccccCC
Q psy3343 69 IVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG 121 (274)
Q Consensus 69 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 121 (274)
++.+.-+++.++|+++..+++......-.-.+.=++|...+.++|++.|...+
T Consensus 12 iv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 12 LTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred HHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56778888999999987776433332234444557898888888888887665
No 200
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=37.67 E-value=23 Score=21.08 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhhcC
Q psy3343 237 FNSTEDSIRRHFKKCG 252 (274)
Q Consensus 237 ~~~tee~L~~~F~~fG 252 (274)
-++++++|+++|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 201
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=36.09 E-value=1.9e+02 Score=25.28 Aligned_cols=93 Identities=23% Similarity=0.319 Sum_probs=47.9
Q ss_pred cccccccChhHHHHHHHHHhCCCcc-cccC---CchhHHH-hhhhhh---------hHHHHHHHHHHHCCCCc---cccc
Q psy3343 26 TWNSLFLGTNAIAEAMAETYNATKA-EVLT---GSGAATR-LAMGET---------EIVEKTRAFLEENGVQL---DAFN 88 (274)
Q Consensus 26 ~wn~lf~~~~~v~~~~~~~~~~~~~-~l~~---~~~~avr-~al~e~---------~~~~~~~~~l~~~g~~~---~~~~ 88 (274)
.|.--|+-+..+++.+.+.+++... .++| |.+...+ ++.... ..+..++..+....+.+ +...
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 3444477777788899998887654 4778 3333222 221111 12222322221112211 1111
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHcccc
Q psy3343 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEP 119 (274)
Q Consensus 89 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~ 119 (274)
-+.... ...+.|+|+|+.++..-|..+...
T Consensus 99 ~~~~~~-~~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 99 VDLSEL-QPLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred CCHHHc-CcceEEEeCCccchHHHHHHHHhc
Confidence 000010 036779999999998888888754
No 202
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.51 E-value=73 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=23.4
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 135 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 135 afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
|||+|.+..+|..|.+.+.... ...+.+..||
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998554433 2444666665
No 203
>KOG4008|consensus
Probab=32.88 E-value=41 Score=29.03 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
....+||+-|+|..+|++-|+.+.+++|-+..+-..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 345699999999999999999999999987766543
No 204
>KOG2891|consensus
Probab=32.08 E-value=48 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=27.8
Q ss_pred ceEEEeCCCCC------------CCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 228 TTLYIKNLNFN------------STEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 228 ~~lfV~NL~~~------------~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
.+||+..||-. .++..|+..|+.||.|..|.|+.-
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 47777777632 467899999999999999998753
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.93 E-value=2.3e+02 Score=24.91 Aligned_cols=91 Identities=25% Similarity=0.264 Sum_probs=50.2
Q ss_pred ccChhHHHHHHHHHhCCCccc-ccC---CchhHHHhhhhhh-----------hHHHHHHHHHHHCCCCc-----cccchh
Q psy3343 31 FLGTNAIAEAMAETYNATKAE-VLT---GSGAATRLAMGET-----------EIVEKTRAFLEENGVQL-----DAFNQV 90 (274)
Q Consensus 31 f~~~~~v~~~~~~~~~~~~~~-l~~---~~~~avr~al~e~-----------~~~~~~~~~l~~~g~~~-----~~~~~~ 90 (274)
|+-+..+++.+.+..++.+.+ ++. |.+...+. |.+. .++...++.+. ..-++ |.+...
T Consensus 12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~-Ll~~~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d 89 (259)
T COG0030 12 FLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEP-LLERAARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFD 89 (259)
T ss_pred cccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHH-HHhhcCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCc
Confidence 778888999999999999954 455 33333322 2221 12222222221 11111 111110
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCe
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 123 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i 123 (274)
-..-......|+||||+++..-+..++...-.+
T Consensus 90 ~~~l~~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 90 FPSLAQPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred chhhcCCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 000003456799999999999999998865544
No 206
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=31.93 E-value=74 Score=25.41 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=26.4
Q ss_pred CCCCceEEEeCCCCCCC-HHHHHHH---hhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNFNST-EDSIRRH---FKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~t-ee~L~~~---F~~fG~I~~v~v~ 260 (274)
.++-.+|.|+-|..++. .++|+.+ .+.||+|.+|.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c 123 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC 123 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec
Confidence 34566899987776653 3566555 4789999999865
No 207
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.53 E-value=1.9e+02 Score=27.10 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhhcCCCcEEEEeCCCCC-CCHHHHHHccccC----CCeeEEEeeCCC------------e-------------------
Q psy3343 90 VVEARSKRIILVKNLPYR-TLPTDLKALFEPF----GDLGRVLVPPYG------------I------------------- 133 (274)
Q Consensus 90 ~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~l~~~~------------~------------------- 133 (274)
|.......+|-|-|+.|. +...+|...|+.| |.|..|.|.++. |
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Q ss_pred ----------------------------------------EEEEEecCHHHHHHHHHHhCCCeeC--CeEEEEEEecCCC
Q psy3343 134 ----------------------------------------TGLVEFLQKNQAKAAFNSLAYTKFK--EVPLYLEWAPEGV 171 (274)
Q Consensus 134 ----------------------------------------~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~~~ 171 (274)
||.|+|.+.+.++..+....|..+. +..+-+.|.|..+
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~ 299 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSL 299 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCc
No 208
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=30.78 E-value=53 Score=25.03 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=23.3
Q ss_pred cEEEEeCCCCC---------CCHHHHHHccccCCCeeEEEeeCC---CeEEEEEecCHHH
Q psy3343 97 RIILVKNLPYR---------TLPTDLKALFEPFGDLGRVLVPPY---GITGLVEFLQKNQ 144 (274)
Q Consensus 97 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~l~~~---~~~afV~F~~~~~ 144 (274)
-++.|-|+|.. ++.++|.+.|+.|.++.-..+.-. .++++|.|...-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 34556677653 466789999999988743333222 3799999996443
No 209
>KOG4365|consensus
Probab=30.59 E-value=7.7 Score=36.29 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=54.2
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--CC----eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--YG----ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--~~----~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
+..++..+|..+++.++.-+|.-||-|..+.+.+ .+ ..+||+-.. .+|..++..+.-..++|..+++..++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4456788999999999999999999998887765 22 367777654 456667766666777777777776653
No 210
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.
Probab=25.80 E-value=46 Score=23.67 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=25.5
Q ss_pred cChhHHHHHHHHHhCCCcccccCCchhHHHhhhhhhhHHHHHHHHHHH
Q psy3343 32 LGTNAIAEAMAETYNATKAEVLTGSGAATRLAMGETEIVEKTRAFLEE 79 (274)
Q Consensus 32 ~~~~~v~~~~~~~~~~~~~~l~~~~~~avr~al~e~~~~~~~~~~l~~ 79 (274)
+...+-+...|+.+|||++-+. .++.-|+..-...+..+++..|..
T Consensus 16 i~~~aTVR~~Ak~FGvSKSTVH--kDvteRL~~in~~La~eV~~vL~~ 61 (82)
T PF12116_consen 16 IETKATVRQAAKVFGVSKSTVH--KDVTERLPKINPELAREVRKVLDY 61 (82)
T ss_dssp HHH---HHHHHHHHTS-HHHHH--HHHTTHHHHH-HHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHCCcHHHHH--HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455667788999999999873 344445544444455555555443
No 211
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.98 E-value=1.4e+02 Score=21.12 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=24.1
Q ss_pred CeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCC
Q psy3343 122 DLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYT 155 (274)
Q Consensus 122 ~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~ 155 (274)
.|.++..+. -+||-|||=.+..+...|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 356666665 4799999999999999999876653
No 212
>KOG0156|consensus
Probab=23.06 E-value=1.2e+02 Score=29.21 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=44.1
Q ss_pred EEeCCCCCC---CHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy3343 100 LVKNLPYRT---LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPL 162 (274)
Q Consensus 100 ~V~nLp~~~---te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l 162 (274)
+||||+.-- .-..+..+=.+||+|-.+++- ..-.|.-.+.+.|+.|+.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG---~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG---SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec---CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 468887533 334566666789999988873 2457888899999999984 7888888885
No 213
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=22.95 E-value=50 Score=22.55 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHhCCCcccccC
Q psy3343 34 TNAIAEAMAETYNATKAEVLT 54 (274)
Q Consensus 34 ~~~v~~~~~~~~~~~~~~l~~ 54 (274)
.+.|++++|+.+|++.++|+.
T Consensus 2 ~~~Ii~~Va~~~~v~~~~i~s 22 (70)
T PF08299_consen 2 IEDIIEAVAEYFGVSVEDIRS 22 (70)
T ss_dssp HHHHHHHHHHHTT--HHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHhC
Confidence 467899999999999999987
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.45 E-value=1.2e+02 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
....|.|||+++|-.-|..++...-.+..+.+|.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 3677999999999999999998876766766663
No 215
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=22.37 E-value=38 Score=23.54 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.7
Q ss_pred cccccccChhHHHHHHHHHhCCCccccc
Q psy3343 26 TWNSLFLGTNAIAEAMAETYNATKAEVL 53 (274)
Q Consensus 26 ~wn~lf~~~~~v~~~~~~~~~~~~~~l~ 53 (274)
-||++.=....+..++|+.+|++..+|-
T Consensus 35 e~n~~~e~~p~~~~~lAk~~G~t~~~l~ 62 (75)
T TIGR02675 35 EINSLLEALPGALQALAKAMGVTRGELR 62 (75)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCCHHHHH
Confidence 5999987777889999999999987763
No 216
>KOG4454|consensus
Probab=21.15 E-value=24 Score=30.14 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=51.3
Q ss_pred CcEEEEeC----CCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCee
Q psy3343 96 KRIILVKN----LPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKF 157 (274)
Q Consensus 96 ~~~l~V~n----Lp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~ 157 (274)
..+++.|| |...++++.+...|+.-|.+..++++++ +.++|+.+....+.-.++....+...
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 36777888 8888999999999999999999999872 36899999988888888887666543
No 217
>KOG1295|consensus
Probab=20.11 E-value=1.6e+02 Score=27.33 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=43.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCC-eeEEEeeC-C-------CeEEEEEecCHHHHHHHHHHhCCCee
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGD-LGRVLVPP-Y-------GITGLVEFLQKNQAKAAFNSLAYTKF 157 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~l~~-~-------~~~afV~F~~~~~A~~A~~~l~~~~~ 157 (274)
...+.|.+||+..++.+|.+-..++-. +....+.+ + -+.|||.|..+++...-...++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467889999999999999887776532 22233332 1 14689999999997777777777544
Done!