Query psy3343
Match_columns 274
No_of_seqs 322 out of 2551
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:33:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxl_A Paraneoplastic encephal 99.9 5.4E-25 1.9E-29 177.4 16.0 118 95-263 1-124 (167)
2 3tyt_A Heterogeneous nuclear r 99.9 6.7E-25 2.3E-29 184.8 16.5 155 95-264 3-162 (205)
3 1b7f_A Protein (SXL-lethal pro 99.9 8.8E-25 3E-29 176.7 15.6 121 95-266 2-129 (168)
4 3sde_A Paraspeckle component 1 99.9 1.2E-24 4.3E-29 189.4 15.7 119 94-269 20-138 (261)
5 3nmr_A Cugbp ELAV-like family 99.9 8.1E-25 2.8E-29 177.9 13.4 125 95-269 2-137 (175)
6 3md3_A Nuclear and cytoplasmic 99.9 2.2E-24 7.7E-29 173.6 15.3 119 97-264 1-124 (166)
7 4f02_A Polyadenylate-binding p 99.9 2.1E-24 7.1E-29 182.5 15.5 123 94-265 13-141 (213)
8 2g4b_A Splicing factor U2AF 65 99.9 2.5E-24 8.6E-29 174.8 13.9 121 95-267 3-135 (172)
9 1l3k_A Heterogeneous nuclear r 99.9 5.2E-24 1.8E-28 176.5 14.1 126 93-264 10-141 (196)
10 2yh0_A Splicing factor U2AF 65 99.9 1.9E-23 6.3E-28 173.4 15.5 137 95-263 3-150 (198)
11 2ghp_A U4/U6 snRNA-associated 99.9 2.3E-24 7.8E-29 190.1 10.1 193 25-269 39-255 (292)
12 3smz_A Protein raver-1, ribonu 99.9 8.8E-24 3E-28 185.6 12.6 187 26-269 21-227 (284)
13 3smz_A Protein raver-1, ribonu 99.9 4.5E-23 1.5E-27 181.1 16.4 114 93-264 19-132 (284)
14 2qfj_A FBP-interacting repress 99.9 3.1E-23 1.1E-27 174.4 13.1 130 95-264 27-162 (216)
15 2cjk_A Nuclear polyadenylated 99.9 6.8E-24 2.3E-28 171.4 8.4 122 95-269 2-130 (167)
16 1qm9_A Polypyrimidine tract-bi 99.9 1.6E-22 5.5E-27 168.3 15.2 153 95-263 2-157 (198)
17 2adc_A Polypyrimidine tract-bi 99.9 2.9E-22 1E-26 171.0 17.1 155 92-262 30-187 (229)
18 3pgw_A U1-A; protein-RNA compl 99.9 2.7E-22 9.4E-27 175.9 17.1 78 93-170 6-90 (282)
19 2ghp_A U4/U6 snRNA-associated 99.9 1.4E-22 4.6E-27 178.7 13.4 119 92-269 37-160 (292)
20 4f25_A Polyadenylate-binding p 99.9 1E-22 3.5E-27 155.8 9.9 76 95-170 4-83 (115)
21 1fje_B Nucleolin RBD12, protei 99.9 1E-21 3.5E-26 160.0 12.7 124 92-269 9-137 (175)
22 3r27_A HnRNP L, heterogeneous 99.8 3.8E-19 1.3E-23 132.1 10.1 79 92-170 17-97 (100)
23 4fxv_A ELAV-like protein 1; RN 99.8 5.7E-19 1.9E-23 131.4 10.6 76 93-168 16-97 (99)
24 1whx_A Hypothetical protein ri 99.8 2.9E-19 9.8E-24 135.8 8.7 83 93-175 7-89 (111)
25 1sjq_A Polypyrimidine tract-bi 99.8 3.1E-19 1.1E-23 133.8 8.1 78 93-170 13-92 (105)
26 2wbr_A GW182, gawky, LD47780P; 99.8 6.6E-19 2.3E-23 126.8 8.9 75 94-168 5-79 (89)
27 2cq1_A PTB-like protein L; RRM 99.8 3.9E-18 1.3E-22 127.3 12.2 78 93-170 12-91 (101)
28 1x4d_A Matrin 3; structural ge 99.8 8.2E-19 2.8E-23 131.1 8.5 77 93-169 12-91 (102)
29 3lqv_A PRE-mRNA branch site pr 99.8 6.2E-19 2.1E-23 134.4 6.8 75 94-168 6-83 (115)
30 1x4f_A Matrin 3; structural ge 99.8 1.4E-18 4.9E-23 131.8 8.5 89 80-170 11-102 (112)
31 2hvz_A Splicing factor, argini 99.8 9.9E-19 3.4E-23 130.1 7.2 74 97-170 1-75 (101)
32 1wex_A Hypothetical protein (r 99.8 3.2E-18 1.1E-22 128.5 9.3 78 93-170 12-91 (104)
33 2ad9_A Polypyrimidine tract-bi 99.7 3.4E-18 1.2E-22 131.1 9.1 78 93-170 28-107 (119)
34 3s8s_A Histone-lysine N-methyl 99.7 7.9E-18 2.7E-22 127.6 10.4 78 93-170 3-86 (110)
35 2ytc_A PRE-mRNA-splicing facto 99.7 6.7E-18 2.3E-22 121.5 8.7 76 92-167 8-84 (85)
36 2cpj_A Non-POU domain-containi 99.7 1.3E-17 4.3E-22 123.7 9.6 78 93-170 12-89 (99)
37 3md1_A Nuclear and cytoplasmic 99.7 2.4E-17 8.3E-22 117.9 10.4 74 97-170 2-81 (83)
38 2lkz_A RNA-binding protein 5; 99.7 9.4E-18 3.2E-22 123.9 8.4 75 94-168 7-93 (95)
39 2lxi_A RNA-binding protein 10; 99.7 4.1E-18 1.4E-22 124.7 5.9 75 96-170 1-83 (91)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.5E-17 8.4E-22 118.4 9.7 75 93-167 4-84 (85)
41 2la4_A Nuclear and cytoplasmic 99.7 1.4E-17 4.7E-22 123.9 8.6 76 94-169 25-100 (101)
42 1why_A Hypothetical protein ri 99.7 2.2E-17 7.4E-22 122.0 9.6 78 93-170 14-93 (97)
43 3bs9_A Nucleolysin TIA-1 isofo 99.7 3E-17 1E-21 118.4 10.0 75 95-169 5-85 (87)
44 2cq3_A RNA-binding protein 9; 99.7 7.1E-17 2.4E-21 120.4 12.3 79 92-170 11-93 (103)
45 2x1f_A MRNA 3'-END-processing 99.7 4.1E-17 1.4E-21 120.2 10.8 76 95-170 1-82 (96)
46 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-17 9.2E-22 124.1 9.8 78 93-170 22-99 (109)
47 2dgx_A KIAA0430 protein; RRM d 99.7 2.6E-17 9E-22 121.4 9.4 77 94-170 7-90 (96)
48 2cq2_A Hypothetical protein LO 99.7 1.7E-17 5.8E-22 126.1 8.4 77 94-170 23-106 (114)
49 1wg1_A KIAA1579 protein, homol 99.7 2.6E-17 8.9E-22 119.5 8.8 78 93-171 2-79 (88)
50 4a8x_A RNA-binding protein wit 99.7 5.9E-17 2E-21 117.1 10.4 75 95-169 3-84 (88)
51 1x4c_A Splicing factor, argini 99.7 5.2E-17 1.8E-21 122.5 10.3 77 93-170 12-93 (108)
52 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.5E-17 1.9E-21 121.0 10.3 79 92-170 11-93 (103)
53 2ywk_A Putative RNA-binding pr 99.7 3.8E-17 1.3E-21 120.0 9.3 76 93-168 13-93 (95)
54 1whw_A Hypothetical protein ri 99.7 6E-17 2.1E-21 119.9 10.4 78 93-170 5-88 (99)
55 2cph_A RNA binding motif prote 99.7 5.1E-17 1.7E-21 121.9 9.7 79 92-170 11-97 (107)
56 1x5t_A Splicing factor 3B subu 99.7 4.1E-17 1.4E-21 120.0 9.0 77 94-170 3-86 (96)
57 2dnz_A Probable RNA-binding pr 99.7 7.8E-17 2.7E-21 118.3 10.4 77 94-170 3-85 (95)
58 2dnq_A RNA-binding protein 4B; 99.7 5.8E-17 2E-21 118.0 9.6 76 93-170 5-80 (90)
59 2cpf_A RNA binding motif prote 99.7 5.1E-17 1.8E-21 120.0 9.3 77 94-170 3-88 (98)
60 2e5h_A Zinc finger CCHC-type a 99.7 7.8E-17 2.7E-21 118.1 10.2 75 93-167 13-93 (94)
61 2cq0_A Eukaryotic translation 99.7 9.1E-17 3.1E-21 119.8 10.6 78 93-170 12-95 (103)
62 2do4_A Squamous cell carcinoma 99.7 9.7E-17 3.3E-21 119.0 10.7 78 93-170 14-96 (100)
63 1x4a_A Splicing factor, argini 99.7 1.1E-16 3.7E-21 120.7 10.9 79 92-170 18-99 (109)
64 2d9p_A Polyadenylate-binding p 99.7 7.2E-17 2.5E-21 120.4 9.7 78 93-170 12-93 (103)
65 2err_A Ataxin-2-binding protei 99.7 6.7E-17 2.3E-21 122.1 9.5 79 92-170 25-107 (109)
66 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6E-17 2.1E-21 120.5 9.1 78 93-170 9-92 (102)
67 2cpi_A CCR4-NOT transcription 99.7 6E-17 2E-21 122.8 9.1 77 94-170 13-101 (111)
68 2xnq_A Nuclear polyadenylated 99.7 1.5E-16 5E-21 117.7 11.0 77 92-170 18-95 (97)
69 2jvr_A Nucleolar protein 3; RN 99.7 5.5E-17 1.9E-21 123.1 8.5 77 93-169 25-104 (111)
70 2dnh_A Bruno-like 5, RNA bindi 99.7 1E-16 3.4E-21 120.0 9.8 77 94-170 13-97 (105)
71 2dgt_A RNA-binding protein 30; 99.7 1.4E-16 4.7E-21 116.4 10.3 76 93-170 7-82 (92)
72 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-16 4.3E-21 121.4 10.4 78 93-170 12-95 (115)
73 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4E-21 120.7 10.0 77 92-170 27-103 (108)
74 3ulh_A THO complex subunit 4; 99.7 1.6E-16 5.3E-21 119.3 10.5 77 92-168 25-106 (107)
75 2dgv_A HnRNP M, heterogeneous 99.7 6.2E-17 2.1E-21 118.1 7.9 78 93-170 5-86 (92)
76 1nu4_A U1A RNA binding domain; 99.7 9E-17 3.1E-21 118.4 8.8 78 93-170 5-89 (97)
77 1s79_A Lupus LA protein; RRM, 99.7 5.6E-17 1.9E-21 121.5 7.6 74 94-168 9-87 (103)
78 2cqc_A Arginine/serine-rich sp 99.7 1.6E-16 5.3E-21 116.6 9.9 76 93-168 12-93 (95)
79 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-16 4.4E-21 120.4 9.6 78 92-169 22-105 (110)
80 2dgs_A DAZ-associated protein 99.7 1.9E-16 6.5E-21 117.2 10.3 77 93-170 7-89 (99)
81 1x5s_A Cold-inducible RNA-bind 99.7 8.9E-17 3E-21 119.6 8.4 78 93-170 9-92 (102)
82 2dnm_A SRP46 splicing factor; 99.7 9.5E-17 3.2E-21 119.7 8.6 78 93-170 10-93 (103)
83 2jrs_A RNA-binding protein 39; 99.7 9.1E-17 3.1E-21 121.3 8.6 80 91-170 21-106 (108)
84 2la6_A RNA-binding protein FUS 99.7 1.3E-16 4.3E-21 118.3 9.0 76 92-167 9-98 (99)
85 1p27_B RNA-binding protein 8A; 99.7 8.8E-17 3E-21 120.5 8.3 77 93-169 20-102 (106)
86 3ucg_A Polyadenylate-binding p 99.7 1.8E-16 6E-21 114.9 9.5 73 96-169 6-84 (89)
87 3ns6_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 121.6 6.0 73 96-168 6-91 (100)
88 2dnp_A RNA-binding protein 14; 99.7 1.5E-16 5.3E-21 115.7 9.2 76 93-170 6-81 (90)
89 1x5u_A Splicing factor 3B subu 99.7 1.4E-16 4.8E-21 119.2 9.0 79 92-170 11-95 (105)
90 2kvi_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 118.0 8.3 76 93-170 7-83 (96)
91 2a3j_A U1 small nuclear ribonu 99.7 9.8E-17 3.4E-21 124.6 8.4 78 93-170 26-110 (127)
92 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-16 5.6E-21 120.9 9.5 78 93-170 22-105 (115)
93 1x4h_A RNA-binding protein 28; 99.7 1.9E-16 6.6E-21 119.5 9.8 78 93-170 12-101 (111)
94 2fy1_A RNA-binding motif prote 99.7 1.9E-16 6.4E-21 121.1 9.6 78 93-170 4-86 (116)
95 2do0_A HnRNP M, heterogeneous 99.7 3E-16 1E-20 119.1 10.7 77 93-169 12-93 (114)
96 2khc_A Testis-specific RNP-typ 99.7 1.8E-16 6.2E-21 121.1 9.5 75 93-167 37-117 (118)
97 3s7r_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 113.2 10.1 75 92-167 7-87 (87)
98 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 6E-21 118.4 9.0 75 94-170 9-83 (103)
99 1x4e_A RNA binding motif, sing 99.7 5E-17 1.7E-21 116.9 5.6 75 94-168 3-83 (85)
100 2div_A TRNA selenocysteine ass 99.7 1.4E-16 4.8E-21 117.9 8.2 78 93-170 6-94 (99)
101 1x5p_A Negative elongation fac 99.7 5.1E-16 1.8E-20 114.6 10.9 76 93-170 12-87 (97)
102 2cpd_A Apobec-1 stimulating pr 99.7 4.8E-16 1.6E-20 115.1 10.7 76 93-170 12-89 (99)
103 2nlw_A Eukaryotic translation 99.7 1.5E-16 5.2E-21 119.3 7.8 76 94-169 13-99 (105)
104 2cpe_A RNA-binding protein EWS 99.7 3E-16 1E-20 119.0 9.4 78 93-170 12-103 (113)
105 1wi8_A EIF-4B, eukaryotic tran 99.7 4.1E-16 1.4E-20 116.5 10.0 76 93-170 12-94 (104)
106 2i2y_A Fusion protein consists 99.7 1.7E-16 5.9E-21 126.5 8.2 78 93-170 70-148 (150)
107 3ex7_B RNA-binding protein 8A; 99.7 2.3E-16 8E-21 121.9 8.6 79 92-170 18-102 (126)
108 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.6E-21 117.2 6.3 77 93-170 5-83 (93)
109 1p1t_A Cleavage stimulation fa 99.7 1.4E-16 4.9E-21 118.8 7.1 76 95-170 7-88 (104)
110 2dgp_A Bruno-like 4, RNA bindi 99.7 2.5E-16 8.5E-21 118.0 8.3 78 93-170 10-96 (106)
111 2krb_A Eukaryotic translation 99.7 1.1E-16 3.8E-21 114.2 6.1 69 96-164 1-80 (81)
112 3zzy_A Polypyrimidine tract-bi 99.7 6E-16 2E-20 120.2 10.7 74 97-170 29-106 (130)
113 2dis_A Unnamed protein product 99.7 2.3E-16 7.9E-21 118.8 8.0 77 94-170 6-92 (109)
114 2e5j_A Methenyltetrahydrofolat 99.7 3.9E-16 1.3E-20 115.2 9.1 77 93-170 16-94 (97)
115 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 8.9E-21 113.5 7.9 72 94-166 4-86 (87)
116 2kt5_A RNA and export factor-b 99.7 7.3E-16 2.5E-20 118.9 10.8 78 93-170 32-114 (124)
117 3p5t_L Cleavage and polyadenyl 99.6 8.4E-17 2.9E-21 117.2 5.1 74 97-170 2-83 (90)
118 2ek1_A RNA-binding protein 12; 99.6 1.5E-16 5.3E-21 116.7 6.5 76 93-168 12-93 (95)
119 2cqd_A RNA-binding region cont 99.6 5.5E-16 1.9E-20 118.1 9.8 78 92-170 13-96 (116)
120 2dng_A Eukaryotic translation 99.6 7E-16 2.4E-20 115.1 10.1 76 93-170 12-93 (103)
121 2cqp_A RNA-binding protein 12; 99.6 2E-16 6.8E-21 116.8 7.0 77 93-169 12-94 (98)
122 2mss_A Protein (musashi1); RNA 99.6 1.5E-16 5.3E-21 111.6 5.9 69 98-167 1-75 (75)
123 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.9E-16 2E-20 121.5 9.6 75 93-167 60-140 (140)
124 1wf1_A RNA-binding protein RAL 99.6 4.6E-16 1.6E-20 117.5 8.6 73 95-169 26-99 (110)
125 2dhg_A TRNA selenocysteine ass 99.6 2.4E-16 8E-21 117.7 6.9 78 93-170 6-90 (104)
126 2diu_A KIAA0430 protein; struc 99.6 3.6E-16 1.2E-20 113.7 7.4 72 95-170 8-84 (96)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.8E-16 6.1E-21 111.7 5.6 70 97-167 1-76 (77)
128 2kxn_B Transformer-2 protein h 99.6 3.6E-16 1.2E-20 121.8 7.8 78 93-170 43-126 (129)
129 2cq4_A RNA binding motif prote 99.6 7.4E-16 2.5E-20 117.0 9.2 73 95-168 24-102 (114)
130 2dgw_A Probable RNA-binding pr 99.6 1.2E-15 4.2E-20 111.0 9.9 76 93-170 7-87 (91)
131 3n9u_C Cleavage and polyadenyl 99.6 8.5E-16 2.9E-20 123.6 9.9 74 95-168 54-135 (156)
132 1rk8_A CG8781-PA, CG8781-PA pr 99.6 8.5E-16 2.9E-20 124.5 9.8 78 93-170 69-152 (165)
133 1x5o_A RNA binding motif, sing 99.6 1.3E-15 4.4E-20 115.6 10.1 77 93-169 22-111 (114)
134 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.8E-20 112.1 9.3 76 94-170 6-82 (94)
135 2fc9_A NCL protein; structure 99.6 1.5E-15 5.1E-20 112.8 10.1 75 93-170 12-91 (101)
136 1u6f_A Tcubp1, RNA-binding pro 99.6 6.7E-16 2.3E-20 121.3 8.6 78 93-170 39-122 (139)
137 2e5i_A Heterogeneous nuclear r 99.6 1.2E-15 4.3E-20 117.7 9.7 74 97-170 26-102 (124)
138 2ki2_A SS-DNA binding protein 99.6 1.6E-16 5.4E-21 115.5 4.4 73 97-170 2-80 (90)
139 2jwn_A Embryonic polyadenylate 99.6 7.5E-16 2.6E-20 118.7 8.3 75 95-170 35-115 (124)
140 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.7E-16 1.3E-20 116.1 6.3 75 93-169 16-97 (100)
141 2e44_A Insulin-like growth fac 99.6 8.6E-16 2.9E-20 113.0 8.1 78 93-170 12-92 (96)
142 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.3E-15 7.9E-20 120.7 11.2 78 93-170 36-119 (156)
143 2rs2_A Musashi-1, RNA-binding 99.6 1.5E-15 5.2E-20 114.6 9.5 77 93-170 22-104 (109)
144 3md3_A Nuclear and cytoplasmic 99.6 5.5E-16 1.9E-20 124.2 7.4 76 93-168 84-165 (166)
145 3d2w_A TAR DNA-binding protein 99.6 2.3E-15 7.9E-20 109.5 9.9 75 92-170 7-84 (89)
146 3beg_B Splicing factor, argini 99.6 6.4E-16 2.2E-20 117.9 7.1 75 93-168 13-92 (115)
147 2kn4_A Immunoglobulin G-bindin 99.6 1.3E-15 4.4E-20 122.2 9.2 77 94-170 68-150 (158)
148 1x4b_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 115.5 9.1 75 95-170 26-106 (116)
149 2cpx_A Hypothetical protein FL 99.6 9.4E-16 3.2E-20 116.5 7.6 78 93-170 22-105 (115)
150 1fjc_A Nucleolin RBD2, protein 99.6 9.5E-16 3.3E-20 112.7 7.2 77 93-170 13-91 (96)
151 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-15 4.1E-20 122.8 8.3 74 97-170 47-124 (164)
152 2dh8_A DAZ-associated protein 99.6 9.3E-16 3.2E-20 114.7 7.2 77 93-170 13-95 (105)
153 2cpy_A RNA-binding protein 12; 99.6 1.2E-15 4.3E-20 116.0 8.0 75 93-168 12-92 (114)
154 2cqg_A TDP-43, TAR DNA-binding 99.6 3.8E-15 1.3E-19 111.0 9.8 76 93-170 12-93 (103)
155 1wg5_A Heterogeneous nuclear r 99.6 2.7E-15 9.1E-20 112.3 8.8 77 93-170 12-94 (104)
156 2bz2_A Negative elongation fac 99.6 2.9E-15 9.8E-20 115.4 9.0 76 93-170 36-111 (121)
157 2db1_A Heterogeneous nuclear r 99.6 2.7E-15 9.3E-20 114.9 8.7 75 93-168 14-96 (118)
158 3egn_A RNA-binding protein 40; 99.6 2.1E-15 7.3E-20 119.1 8.2 78 93-170 42-130 (143)
159 2fc8_A NCL protein; structure 99.6 4.6E-15 1.6E-19 110.2 9.6 78 93-170 12-92 (102)
160 2lea_A Serine/arginine-rich sp 99.6 6.4E-16 2.2E-20 121.3 5.1 78 93-170 44-127 (135)
161 2m2b_A RNA-binding protein 10; 99.6 4.9E-16 1.7E-20 121.1 3.9 78 92-170 19-108 (131)
162 1wez_A HnRNP H', FTP-3, hetero 99.6 5E-15 1.7E-19 110.5 8.8 76 93-170 12-92 (102)
163 1iqt_A AUF1, heterogeneous nuc 99.6 7.2E-16 2.4E-20 108.1 3.8 69 98-167 1-75 (75)
164 2hgl_A HNRPF protein, heteroge 99.6 3.3E-15 1.1E-19 117.3 7.6 75 93-168 41-123 (136)
165 1wel_A RNA-binding protein 12; 99.6 1.1E-15 3.9E-20 117.9 4.7 75 94-169 23-103 (124)
166 1fj7_A Nucleolin RBD1, protein 99.6 8.6E-16 2.9E-20 114.1 3.8 76 93-170 14-95 (101)
167 2dnn_A RNA-binding protein 12; 99.6 9.3E-15 3.2E-19 110.4 9.5 71 96-168 16-91 (109)
168 2xs2_A Deleted in azoospermia- 99.6 1.6E-15 5.5E-20 112.8 4.9 76 93-170 6-86 (102)
169 3u1l_A PRE-mRNA-splicing facto 99.6 3.2E-15 1.1E-19 127.8 7.2 79 92-170 130-229 (240)
170 2lmi_A GRSF-1, G-rich sequence 99.6 2.2E-15 7.6E-20 113.3 5.1 75 93-168 8-90 (107)
171 1wf0_A TDP-43, TAR DNA-binding 99.6 4.4E-15 1.5E-19 107.4 6.4 74 95-170 4-78 (88)
172 4f02_A Polyadenylate-binding p 99.6 1.1E-14 3.8E-19 122.6 9.7 136 26-169 14-180 (213)
173 2f3j_A RNA and export factor b 99.6 8.1E-15 2.8E-19 120.2 8.6 77 94-170 86-167 (177)
174 3q2s_C Cleavage and polyadenyl 99.6 6.4E-15 2.2E-19 125.7 7.9 74 95-168 67-148 (229)
175 2lcw_A RNA-binding protein FUS 99.3 3.5E-16 1.2E-20 119.3 0.0 78 93-170 4-95 (116)
176 2g4b_A Splicing factor U2AF 65 99.5 1.5E-14 5.1E-19 116.8 8.9 73 95-167 93-171 (172)
177 2qfj_A FBP-interacting repress 99.5 2.9E-14 9.9E-19 119.3 9.8 78 93-170 122-205 (216)
178 2pe8_A Splicing factor 45; RRM 99.5 7E-14 2.4E-18 104.9 10.6 77 93-169 5-93 (105)
179 3pgw_S U1-70K; protein-RNA com 99.5 3.3E-14 1.1E-18 132.2 10.2 77 94-170 100-182 (437)
180 2yh0_A Splicing factor U2AF 65 99.5 3.9E-14 1.3E-18 116.9 9.4 77 94-170 112-194 (198)
181 1b7f_A Protein (SXL-lethal pro 99.5 6E-14 2E-18 112.7 10.0 75 93-167 86-168 (168)
182 2dha_A FLJ20171 protein; RRM d 99.5 1E-14 3.4E-19 112.6 5.0 75 93-168 20-103 (123)
183 2hgn_A Heterogeneous nuclear r 99.5 6.7E-15 2.3E-19 116.0 4.0 76 93-170 43-123 (139)
184 3nmr_A Cugbp ELAV-like family 99.5 3.6E-14 1.2E-18 114.6 8.4 73 95-167 94-174 (175)
185 3pgw_A U1-A; protein-RNA compl 99.5 5.9E-14 2E-18 122.6 10.3 75 94-168 205-281 (282)
186 2dnl_A Cytoplasmic polyadenyla 99.5 4.5E-14 1.5E-18 107.3 8.0 73 93-168 5-86 (114)
187 2hgm_A HNRPF protein, heteroge 99.5 3.4E-14 1.2E-18 110.0 7.4 73 94-168 40-119 (126)
188 2cjk_A Nuclear polyadenylated 99.5 4E-14 1.4E-18 113.7 7.4 76 94-170 85-166 (167)
189 2adc_A Polypyrimidine tract-bi 99.5 1E-13 3.4E-18 117.9 9.7 75 95-169 150-227 (229)
190 2dit_A HIV TAT specific factor 99.5 1.8E-13 6.1E-18 103.7 10.0 79 92-170 11-102 (112)
191 1fje_B Nucleolin RBD12, protei 99.5 9.3E-14 3.2E-18 112.6 9.0 76 94-170 97-174 (175)
192 1qm9_A Polypyrimidine tract-bi 99.5 6.9E-14 2.3E-18 115.8 8.0 76 95-170 119-197 (198)
193 1l3k_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 113.3 9.9 137 25-170 11-183 (196)
194 2voo_A Lupus LA protein; RNA-b 99.5 1E-13 3.4E-18 115.3 9.0 73 96-169 109-186 (193)
195 1fxl_A Paraneoplastic encephal 99.5 1.3E-13 4.3E-18 110.4 8.9 75 93-167 85-167 (167)
196 2j8a_A Histone-lysine N-methyl 99.4 1.7E-13 5.9E-18 105.2 7.9 75 96-170 2-96 (136)
197 3tht_A Alkylated DNA repair pr 99.4 2.2E-13 7.5E-18 122.4 9.2 76 93-168 15-97 (345)
198 3v4m_A Splicing factor U2AF 65 99.4 6.6E-13 2.3E-17 99.5 9.0 76 95-170 4-97 (105)
199 3tyt_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 113.0 7.9 73 95-167 122-204 (205)
200 3sde_A Paraspeckle component 1 99.4 1.6E-13 5.4E-18 119.0 5.9 137 25-169 20-178 (261)
201 1jmt_A Splicing factor U2AF 35 99.4 9.3E-14 3.2E-18 104.0 3.2 68 101-168 20-104 (104)
202 2kn4_A Immunoglobulin G-bindin 99.4 1.7E-12 5.7E-17 103.9 8.7 101 131-269 12-113 (158)
203 2i2y_A Fusion protein consists 99.3 7.4E-13 2.5E-17 105.3 5.9 95 132-262 13-108 (150)
204 3ue2_A Poly(U)-binding-splicin 99.3 3.3E-12 1.1E-16 97.6 9.3 76 95-170 19-109 (118)
205 3s6e_A RNA-binding protein 39; 99.3 3.9E-12 1.3E-16 96.7 8.4 83 95-177 6-100 (114)
206 2d9o_A DNAJ (HSP40) homolog, s 99.3 7.8E-12 2.7E-16 92.7 8.7 73 96-170 10-90 (100)
207 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-10 4.7E-15 88.6 9.5 75 93-167 15-93 (121)
208 2dnr_A Synaptojanin-1; RRM dom 99.0 1.4E-09 4.8E-14 78.2 8.3 74 94-170 5-86 (91)
209 4fxv_A ELAV-like protein 1; RN 99.0 4.4E-10 1.5E-14 83.0 5.5 41 224-264 16-56 (99)
210 1s79_A Lupus LA protein; RRM, 98.9 1.4E-09 4.7E-14 80.9 6.4 45 225-269 9-53 (103)
211 3r27_A HnRNP L, heterogeneous 98.9 4.3E-09 1.5E-13 77.7 6.7 41 223-263 17-57 (100)
212 1sjq_A Polypyrimidine tract-bi 98.9 3.5E-09 1.2E-13 78.9 6.1 40 223-262 12-51 (105)
213 2lea_A Serine/arginine-rich sp 98.9 7.6E-10 2.6E-14 86.4 2.6 39 226-264 46-84 (135)
214 3s8s_A Histone-lysine N-methyl 98.8 3.6E-09 1.2E-13 79.6 5.6 40 225-264 4-43 (110)
215 3s7r_A Heterogeneous nuclear r 98.8 5.7E-09 1.9E-13 74.6 5.6 41 224-264 8-48 (87)
216 2lxi_A RNA-binding protein 10; 98.8 1.9E-09 6.4E-14 78.2 2.7 43 227-269 1-45 (91)
217 4f25_A Polyadenylate-binding p 98.8 5.4E-09 1.9E-13 79.1 5.4 40 226-265 4-43 (115)
218 1ufw_A Synaptojanin 2; RNP dom 98.8 6.5E-09 2.2E-13 75.1 5.2 73 93-168 12-93 (95)
219 2dnh_A Bruno-like 5, RNA bindi 98.8 9.4E-09 3.2E-13 76.1 5.7 44 225-268 13-56 (105)
220 2ywk_A Putative RNA-binding pr 98.8 8.1E-09 2.8E-13 75.0 5.2 44 225-268 14-57 (95)
221 3d2w_A TAR DNA-binding protein 98.7 8.9E-09 3E-13 74.3 5.2 39 224-262 8-46 (89)
222 1x4d_A Matrin 3; structural ge 98.7 7.8E-09 2.7E-13 76.7 4.8 40 224-263 12-52 (102)
223 2lkz_A RNA-binding protein 5; 98.7 5.2E-09 1.8E-13 76.6 3.5 42 228-269 10-54 (95)
224 2rs2_A Musashi-1, RNA-binding 98.7 1.4E-08 4.9E-13 76.0 5.9 46 224-269 22-68 (109)
225 3dxb_A Thioredoxin N-terminall 98.7 1.6E-08 5.5E-13 85.1 6.9 63 108-170 141-213 (222)
226 2ad9_A Polypyrimidine tract-bi 98.7 1.5E-08 5.2E-13 77.2 6.1 40 223-262 27-66 (119)
227 1whw_A Hypothetical protein ri 98.7 1.8E-08 6.1E-13 73.8 6.2 45 225-269 6-51 (99)
228 2do4_A Squamous cell carcinoma 98.7 1.4E-08 4.7E-13 74.6 5.5 45 224-268 14-58 (100)
229 2dnz_A Probable RNA-binding pr 98.7 2.7E-08 9.4E-13 72.1 6.9 40 225-264 3-42 (95)
230 2cq1_A PTB-like protein L; RRM 98.7 2E-08 6.9E-13 74.3 6.1 39 224-262 12-50 (101)
231 1rk8_A CG8781-PA, CG8781-PA pr 98.7 1.4E-08 4.9E-13 81.6 5.6 97 137-264 11-109 (165)
232 1wg5_A Heterogeneous nuclear r 98.7 1.7E-08 5.7E-13 74.9 5.5 45 225-269 13-58 (104)
233 3ulh_A THO complex subunit 4; 98.7 1.8E-08 6.1E-13 74.8 5.6 46 223-268 25-70 (107)
234 1wex_A Hypothetical protein (r 98.7 3.3E-08 1.1E-12 73.6 7.0 40 223-262 11-50 (104)
235 2e5h_A Zinc finger CCHC-type a 98.7 2.9E-08 9.9E-13 71.8 6.6 42 223-264 12-53 (94)
236 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.2E-08 4.1E-13 71.0 4.3 37 228-264 1-37 (77)
237 1x4e_A RNA binding motif, sing 98.7 2.4E-08 8.1E-13 71.0 6.0 40 225-264 3-42 (85)
238 2dhg_A TRNA selenocysteine ass 98.7 1.7E-08 5.8E-13 74.6 5.4 44 224-267 6-50 (104)
239 2dgs_A DAZ-associated protein 98.7 3.1E-08 1.1E-12 72.5 6.7 41 224-264 7-47 (99)
240 2m2b_A RNA-binding protein 10; 98.7 1.9E-08 6.4E-13 77.8 5.6 46 224-269 20-68 (131)
241 2fy1_A RNA-binding motif prote 98.7 2.8E-08 9.4E-13 75.3 6.5 45 225-269 5-49 (116)
242 2dgp_A Bruno-like 4, RNA bindi 98.7 1.9E-08 6.5E-13 74.6 5.5 41 224-264 10-50 (106)
243 3pgw_S U1-70K; protein-RNA com 98.7 2.8E-09 9.7E-14 98.9 1.1 40 225-264 100-139 (437)
244 2cpy_A RNA-binding protein 12; 98.7 1.8E-08 6.1E-13 76.0 5.3 46 224-269 12-58 (114)
245 2do0_A HnRNP M, heterogeneous 98.7 1.9E-08 6.4E-13 75.6 5.5 45 224-268 12-56 (114)
246 2cq3_A RNA-binding protein 9; 98.7 4.4E-08 1.5E-12 72.2 7.4 42 224-265 12-53 (103)
247 2xs2_A Deleted in azoospermia- 98.7 1E-08 3.6E-13 75.5 3.9 43 226-268 8-50 (102)
248 1x4h_A RNA-binding protein 28; 98.7 2.5E-08 8.5E-13 74.5 6.0 42 223-264 11-52 (111)
249 2cqg_A TDP-43, TAR DNA-binding 98.7 2.3E-08 7.7E-13 73.8 5.7 41 224-264 12-52 (103)
250 1x5u_A Splicing factor 3B subu 98.7 2.9E-08 9.9E-13 73.4 6.2 46 223-268 11-57 (105)
251 2x1f_A MRNA 3'-END-processing 98.7 2.4E-08 8.3E-13 72.7 5.7 39 226-264 1-39 (96)
252 2dnm_A SRP46 splicing factor; 98.7 3E-08 1E-12 73.1 6.2 42 223-264 9-50 (103)
253 1wez_A HnRNP H', FTP-3, hetero 98.7 1.2E-08 4.1E-13 75.5 4.1 45 224-269 12-56 (102)
254 3mdf_A Peptidyl-prolyl CIS-tra 98.7 2.1E-08 7.1E-13 71.1 5.1 40 225-264 5-44 (85)
255 2cph_A RNA binding motif prote 98.7 3E-08 1E-12 73.6 6.0 40 224-263 12-51 (107)
256 3ns6_A Eukaryotic translation 98.7 7.1E-09 2.4E-13 76.4 2.5 44 226-269 5-55 (100)
257 2cqd_A RNA-binding region cont 98.7 4.2E-08 1.4E-12 74.0 6.8 42 223-264 13-54 (116)
258 2l9w_A U4/U6 snRNA-associated- 98.7 1.1E-07 3.7E-12 70.2 8.6 73 95-167 20-97 (117)
259 2cqi_A Nucleolysin TIAR; RNA r 98.7 5E-08 1.7E-12 71.9 6.9 42 224-265 12-53 (103)
260 1x5o_A RNA binding motif, sing 98.6 3.8E-08 1.3E-12 74.0 6.2 44 224-267 22-65 (114)
261 2d9p_A Polyadenylate-binding p 98.6 2.6E-08 8.8E-13 73.5 5.1 43 223-266 11-53 (103)
262 3ucg_A Polyadenylate-binding p 98.6 4.3E-08 1.5E-12 70.1 6.1 38 227-264 6-43 (89)
263 3md1_A Nuclear and cytoplasmic 98.6 2.6E-08 8.9E-13 70.3 4.9 38 227-264 1-38 (83)
264 3bs9_A Nucleolysin TIA-1 isofo 98.6 2.9E-08 9.9E-13 70.7 5.1 39 226-264 5-43 (87)
265 2hgl_A HNRPF protein, heteroge 98.6 1.7E-08 5.9E-13 78.8 4.0 46 224-269 41-89 (136)
266 1x5t_A Splicing factor 3B subu 98.6 2.8E-08 9.7E-13 72.2 4.9 39 225-263 3-42 (96)
267 2div_A TRNA selenocysteine ass 98.6 3.2E-08 1.1E-12 72.4 5.2 40 225-264 7-47 (99)
268 2cpz_A CUG triplet repeat RNA- 98.6 2.9E-08 9.8E-13 74.8 5.0 41 224-264 22-62 (115)
269 2kt5_A RNA and export factor-b 98.6 4.8E-08 1.7E-12 74.6 6.3 47 223-269 31-77 (124)
270 2cq4_A RNA binding motif prote 98.6 4.3E-08 1.5E-12 73.7 5.9 44 226-269 24-68 (114)
271 1wf0_A TDP-43, TAR DNA-binding 98.6 3.5E-08 1.2E-12 70.6 5.1 37 226-262 4-40 (88)
272 2lmi_A GRSF-1, G-rich sequence 98.6 1.7E-08 5.7E-13 75.3 3.4 46 224-269 8-56 (107)
273 2mss_A Protein (musashi1); RNA 98.6 2.2E-08 7.4E-13 69.4 3.8 40 229-268 1-41 (75)
274 1wi8_A EIF-4B, eukaryotic tran 98.6 4.7E-08 1.6E-12 72.3 5.7 39 225-264 13-51 (104)
275 1p27_B RNA-binding protein 8A; 98.6 4E-08 1.4E-12 72.7 5.4 41 224-264 20-60 (106)
276 2hgm_A HNRPF protein, heteroge 98.6 4.9E-08 1.7E-12 75.2 5.9 44 225-269 40-85 (126)
277 2dgx_A KIAA0430 protein; RRM d 98.6 6.4E-08 2.2E-12 70.6 6.3 41 225-265 7-51 (96)
278 2db1_A Heterogeneous nuclear r 98.6 1.9E-08 6.5E-13 76.4 3.5 45 225-269 15-62 (118)
279 2krb_A Eukaryotic translation 98.6 3.5E-08 1.2E-12 69.5 4.6 42 227-269 1-48 (81)
280 1iqt_A AUF1, heterogeneous nuc 98.6 2.3E-08 7.8E-13 69.2 3.5 36 229-264 1-36 (75)
281 2khc_A Testis-specific RNP-typ 98.6 6.3E-08 2.1E-12 73.2 6.3 42 223-264 36-77 (118)
282 2dgo_A Cytotoxic granule-assoc 98.6 5.2E-08 1.8E-12 73.3 5.8 42 223-264 11-52 (115)
283 2dgv_A HnRNP M, heterogeneous 98.6 4.8E-08 1.6E-12 70.4 5.3 38 225-262 6-43 (92)
284 2hgn_A Heterogeneous nuclear r 98.6 2.5E-08 8.7E-13 78.1 4.0 44 225-269 44-87 (139)
285 2cpf_A RNA binding motif prote 98.6 5.2E-08 1.8E-12 71.1 5.4 40 225-264 3-42 (98)
286 2dha_A FLJ20171 protein; RRM d 98.6 2.4E-08 8.2E-13 76.6 3.7 44 226-269 22-69 (123)
287 2cqc_A Arginine/serine-rich sp 98.6 7.1E-08 2.4E-12 69.8 6.0 43 223-265 11-53 (95)
288 2dnn_A RNA-binding protein 12; 98.6 4.7E-08 1.6E-12 73.3 5.2 42 227-269 16-57 (109)
289 1x4f_A Matrin 3; structural ge 98.6 6.8E-08 2.3E-12 72.8 6.0 39 224-262 22-61 (112)
290 2cq0_A Eukaryotic translation 98.6 3.9E-08 1.3E-12 72.5 4.5 41 224-264 12-52 (103)
291 2err_A Ataxin-2-binding protei 98.6 6.4E-08 2.2E-12 72.3 5.7 42 224-265 26-67 (109)
292 3lqv_A PRE-mRNA branch site pr 98.6 1E-07 3.4E-12 71.7 6.6 42 224-265 5-46 (115)
293 3p5t_L Cleavage and polyadenyl 98.6 2.5E-08 8.7E-13 71.8 3.1 37 228-264 2-40 (90)
294 2dh8_A DAZ-associated protein 98.6 8.1E-08 2.8E-12 71.0 5.8 41 224-264 13-53 (105)
295 3ex7_B RNA-binding protein 8A; 98.6 8.2E-08 2.8E-12 73.4 6.0 42 223-264 18-59 (126)
296 2cqb_A Peptidyl-prolyl CIS-tra 98.6 6.2E-08 2.1E-12 71.2 5.1 41 224-264 9-49 (102)
297 1x4c_A Splicing factor, argini 98.6 1.2E-07 4E-12 70.7 6.6 38 225-262 13-50 (108)
298 1oo0_B CG8781-PA, drosophila Y 98.6 8.6E-08 2.9E-12 71.5 5.8 41 224-264 23-63 (110)
299 1x5s_A Cold-inducible RNA-bind 98.6 1E-07 3.5E-12 70.0 6.1 41 224-264 9-49 (102)
300 1x4b_A Heterogeneous nuclear r 98.6 8.1E-08 2.8E-12 72.4 5.7 39 226-264 26-64 (116)
301 4a8x_A RNA-binding protein wit 98.6 7.2E-08 2.5E-12 68.7 5.1 39 226-264 3-41 (88)
302 2la6_A RNA-binding protein FUS 98.6 7.7E-08 2.6E-12 70.4 5.4 42 223-264 9-58 (99)
303 2ytc_A PRE-mRNA-splicing facto 98.6 1E-07 3.6E-12 67.5 5.9 39 224-262 9-47 (85)
304 2kxn_B Transformer-2 protein h 98.5 9.3E-08 3.2E-12 73.8 6.0 42 223-264 42-83 (129)
305 2dgt_A RNA-binding protein 30; 98.5 9.2E-08 3.1E-12 69.0 5.5 39 224-262 7-45 (92)
306 2dnp_A RNA-binding protein 14; 98.5 9.3E-08 3.2E-12 68.7 5.5 39 224-262 6-44 (90)
307 2j76_E EIF-4B, EIF4B, eukaryot 98.5 3.9E-08 1.3E-12 72.3 3.2 45 224-269 16-62 (100)
308 1x4a_A Splicing factor, argini 98.5 1.7E-07 5.9E-12 69.8 6.7 41 224-264 19-59 (109)
309 2nlw_A Eukaryotic translation 98.5 1E-07 3.6E-12 70.7 5.4 44 225-269 13-62 (105)
310 2dgw_A Probable RNA-binding pr 98.5 9.3E-08 3.2E-12 68.8 5.0 44 225-269 8-51 (91)
311 2ki2_A SS-DNA binding protein 98.5 3.2E-08 1.1E-12 71.0 2.4 37 228-264 2-38 (90)
312 2dng_A Eukaryotic translation 98.5 1.1E-07 3.6E-12 70.2 5.2 40 224-264 12-51 (103)
313 2jrs_A RNA-binding protein 39; 98.5 1.6E-07 5.5E-12 70.1 6.3 41 224-264 23-63 (108)
314 1why_A Hypothetical protein ri 98.5 2E-07 6.7E-12 67.9 6.0 39 224-262 14-52 (97)
315 2cpe_A RNA-binding protein EWS 98.5 1.3E-07 4.3E-12 70.9 5.1 41 224-264 12-60 (113)
316 2dnl_A Cytoplasmic polyadenyla 98.5 1.3E-07 4.4E-12 71.2 5.1 39 226-265 7-45 (114)
317 2cpj_A Non-POU domain-containi 98.5 2E-07 6.8E-12 68.2 6.0 39 224-262 12-50 (99)
318 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.5 2.3E-07 7.7E-12 72.0 6.6 41 224-264 60-100 (140)
319 2e44_A Insulin-like growth fac 98.5 1.4E-07 4.6E-12 68.6 4.9 40 225-264 13-53 (96)
320 2dnq_A RNA-binding protein 4B; 98.5 2.5E-07 8.7E-12 66.3 6.1 37 224-260 5-41 (90)
321 2dgu_A Heterogeneous nuclear r 98.5 2.1E-07 7.1E-12 68.6 5.6 38 224-261 8-45 (103)
322 1p1t_A Cleavage stimulation fa 98.5 3.8E-08 1.3E-12 72.6 1.5 39 226-264 7-45 (104)
323 2f3j_A RNA and export factor b 98.5 2.1E-07 7.1E-12 75.8 6.0 47 223-269 84-130 (177)
324 3n9u_C Cleavage and polyadenyl 98.5 1.5E-07 5.1E-12 75.1 4.9 39 226-264 54-94 (156)
325 2voo_A Lupus LA protein; RNA-b 98.4 5.1E-07 1.8E-11 74.5 8.3 43 227-269 109-151 (193)
326 1h2v_Z 20 kDa nuclear CAP bind 98.4 3.9E-07 1.3E-11 72.3 7.2 41 224-264 36-76 (156)
327 1u6f_A Tcubp1, RNA-binding pro 98.4 2.9E-07 9.9E-12 71.5 6.1 42 223-264 38-79 (139)
328 1x4g_A Nucleolysin TIAR; struc 98.4 2.7E-07 9.2E-12 68.7 5.7 39 224-262 22-60 (109)
329 2la4_A Nuclear and cytoplasmic 98.4 3.2E-07 1.1E-11 67.3 6.0 38 224-261 24-61 (101)
330 2jwn_A Embryonic polyadenylate 98.4 1.6E-07 5.5E-12 71.5 4.2 38 227-264 36-73 (124)
331 2dis_A Unnamed protein product 98.4 3.2E-07 1.1E-11 68.1 5.7 40 225-264 6-47 (109)
332 1whx_A Hypothetical protein ri 98.4 1.9E-07 6.5E-12 70.0 4.4 35 227-261 10-44 (111)
333 2a3j_A U1 small nuclear ribonu 98.4 4.4E-07 1.5E-11 69.9 6.5 44 224-269 26-73 (127)
334 2j8a_A Histone-lysine N-methyl 98.4 2.5E-07 8.7E-12 70.9 5.0 38 228-265 3-44 (136)
335 2kvi_A Nuclear polyadenylated 98.4 2.7E-07 9.4E-12 67.1 5.0 37 224-260 7-44 (96)
336 2hvz_A Splicing factor, argini 98.4 2.5E-07 8.5E-12 67.8 4.6 35 228-262 1-35 (101)
337 2wbr_A GW182, gawky, LD47780P; 98.4 4.4E-07 1.5E-11 65.0 5.4 36 226-261 6-41 (89)
338 2e5g_A U6 snRNA-specific termi 98.4 7.8E-07 2.7E-11 64.3 6.9 32 226-257 7-38 (94)
339 2cpi_A CCR4-NOT transcription 98.4 2.7E-07 9.2E-12 69.1 4.4 42 224-265 12-56 (111)
340 3q2s_C Cleavage and polyadenyl 98.4 3E-07 1E-11 78.0 5.0 39 226-264 67-107 (229)
341 2fc9_A NCL protein; structure 98.4 3.3E-07 1.1E-11 67.2 4.6 43 224-269 12-54 (101)
342 2cpd_A Apobec-1 stimulating pr 98.4 7.3E-07 2.5E-11 65.1 6.4 38 224-261 12-51 (99)
343 3beg_B Splicing factor, argini 98.4 2.3E-07 7.7E-12 70.0 3.8 37 226-262 15-51 (115)
344 2jvo_A Nucleolar protein 3; nu 98.3 5.4E-07 1.9E-11 67.2 5.2 37 224-260 28-64 (108)
345 2xnq_A Nuclear polyadenylated 98.3 7.4E-07 2.5E-11 65.0 5.9 37 224-260 19-56 (97)
346 2ek1_A RNA-binding protein 12; 98.3 1.7E-07 5.7E-12 67.9 2.3 39 226-264 14-52 (95)
347 2jvr_A Nucleolar protein 3; RN 98.3 3.6E-07 1.2E-11 68.7 4.1 39 224-262 25-64 (111)
348 1wel_A RNA-binding protein 12; 98.3 2.2E-07 7.7E-12 70.9 2.9 43 225-267 23-66 (124)
349 1nu4_A U1A RNA binding domain; 98.3 7.6E-07 2.6E-11 64.6 5.1 38 224-261 5-46 (97)
350 2cqp_A RNA-binding protein 12; 98.3 3.3E-07 1.1E-11 66.7 2.9 40 225-264 13-52 (98)
351 2cq2_A Hypothetical protein LO 98.3 6.2E-07 2.1E-11 67.6 4.3 39 224-262 22-62 (114)
352 2lcw_A RNA-binding protein FUS 97.6 1.2E-07 4E-12 71.5 0.0 40 225-264 5-52 (116)
353 3zzy_A Polypyrimidine tract-bi 98.2 9.8E-07 3.3E-11 68.1 5.0 36 228-263 29-64 (130)
354 1wf1_A RNA-binding protein RAL 98.2 1.3E-06 4.6E-11 65.0 5.5 35 225-259 25-60 (110)
355 2e5j_A Methenyltetrahydrofolat 98.2 1.9E-06 6.5E-11 62.6 6.0 37 225-262 17-53 (97)
356 2hzc_A Splicing factor U2AF 65 98.2 1.5E-06 5.2E-11 61.5 4.9 37 226-262 5-52 (87)
357 2cpx_A Hypothetical protein FL 98.2 2.9E-06 1E-10 63.5 6.2 37 224-260 22-62 (115)
358 2e5i_A Heterogeneous nuclear r 98.2 2.7E-06 9.1E-11 65.2 5.9 34 229-262 27-60 (124)
359 2cqh_A IGF-II mRNA-binding pro 98.2 1.4E-06 4.8E-11 62.7 4.1 36 225-260 6-42 (93)
360 1sjr_A Polypyrimidine tract-bi 98.2 2.4E-06 8.2E-11 68.5 5.7 37 227-263 46-82 (164)
361 2dhx_A Poly (ADP-ribose) polym 98.1 2.6E-05 8.8E-10 57.0 9.9 71 94-167 6-81 (104)
362 1fj7_A Nucleolin RBD1, protein 98.1 2.9E-07 1E-11 67.4 -0.5 37 225-262 15-51 (101)
363 3egn_A RNA-binding protein 40; 98.1 8.2E-07 2.8E-11 69.4 1.9 34 224-257 42-75 (143)
364 1fjc_A Nucleolin RBD2, protein 98.1 8.8E-07 3E-11 64.1 1.1 33 225-257 14-46 (96)
365 1owx_A Lupus LA protein, SS-B, 98.1 4.4E-06 1.5E-10 63.5 5.0 42 223-264 14-56 (121)
366 1x5p_A Negative elongation fac 98.0 1.1E-05 3.7E-10 58.5 6.4 35 224-260 12-46 (97)
367 1wg1_A KIAA1579 protein, homol 98.0 5E-06 1.7E-10 59.3 4.2 34 226-260 4-37 (88)
368 3u1l_A PRE-mRNA-splicing facto 97.9 6.7E-06 2.3E-10 70.0 4.5 38 225-262 132-178 (240)
369 2diu_A KIAA0430 protein; struc 97.8 2E-05 7E-10 57.0 5.1 30 228-257 10-44 (96)
370 2pe8_A Splicing factor 45; RRM 97.8 3.9E-05 1.3E-09 56.8 5.7 40 225-264 6-50 (105)
371 2fc8_A NCL protein; structure 97.8 3.3E-05 1.1E-09 56.3 5.1 38 224-264 12-49 (102)
372 2bz2_A Negative elongation fac 97.7 3E-05 1E-09 58.9 5.0 35 224-260 36-70 (121)
373 1wey_A Calcipressin 1; structu 97.7 7.6E-05 2.6E-09 54.7 6.5 73 96-168 5-82 (104)
374 3tht_A Alkylated DNA repair pr 97.6 4.6E-05 1.6E-09 68.3 4.5 39 223-261 14-54 (345)
375 1uw4_A UPF3X; nonsense mediate 97.5 0.00058 2E-08 49.0 9.0 74 97-170 2-88 (91)
376 1whv_A Poly(A)-specific ribonu 97.2 0.0011 3.8E-08 47.8 6.9 55 96-153 16-70 (100)
377 1wwh_A Nucleoporin 35, nucleop 97.2 0.0013 4.5E-08 49.4 7.4 71 95-167 23-94 (119)
378 2dit_A HIV TAT specific factor 97.1 0.00063 2.2E-08 50.5 5.3 41 223-264 11-62 (112)
379 3ctr_A Poly(A)-specific ribonu 97.1 0.00066 2.2E-08 49.1 5.1 54 97-153 7-60 (101)
380 3v4m_A Splicing factor U2AF 65 97.1 0.00049 1.7E-08 50.7 4.3 41 225-265 3-53 (105)
381 2d9o_A DNAJ (HSP40) homolog, s 96.7 0.0041 1.4E-07 45.4 6.4 35 227-261 10-51 (100)
382 2l08_A Regulator of nonsense t 96.7 0.0051 1.8E-07 44.4 6.8 74 96-169 9-95 (97)
383 1jmt_A Splicing factor U2AF 35 96.7 0.00021 7.1E-09 52.7 -0.7 38 232-269 20-69 (104)
384 3pq1_A Poly(A) RNA polymerase; 96.6 0.00097 3.3E-08 61.8 3.0 54 96-150 53-107 (464)
385 3ue2_A Poly(U)-binding-splicin 96.4 0.0027 9.1E-08 47.8 4.0 39 226-264 19-62 (118)
386 3p3d_A Nucleoporin 53; structu 95.4 0.017 5.9E-07 43.9 4.6 71 95-167 6-96 (132)
387 2dnr_A Synaptojanin-1; RRM dom 95.4 0.017 5.7E-07 41.2 4.2 39 225-263 5-51 (91)
388 3s6e_A RNA-binding protein 39; 94.8 0.049 1.7E-06 40.5 5.5 40 224-263 4-53 (114)
389 1ufw_A Synaptojanin 2; RNP dom 94.0 0.044 1.5E-06 39.3 3.5 41 223-263 11-60 (95)
390 1whv_A Poly(A)-specific ribonu 90.0 0.38 1.3E-05 34.6 4.2 27 227-254 16-42 (100)
391 1uw4_A UPF3X; nonsense mediate 89.4 0.69 2.3E-05 32.8 5.3 36 228-263 2-37 (91)
392 3d45_A Poly(A)-specific ribonu 89.0 0.91 3.1E-05 42.4 7.4 56 96-154 440-495 (507)
393 2l9w_A U4/U6 snRNA-associated- 87.9 0.73 2.5E-05 33.9 4.6 39 227-265 21-64 (117)
394 3ctr_A Poly(A)-specific ribonu 85.9 0.46 1.6E-05 34.2 2.6 25 229-254 8-32 (101)
395 2dhx_A Poly (ADP-ribose) polym 76.7 7 0.00024 28.2 6.1 36 225-260 6-46 (104)
396 3dxb_A Thioredoxin N-terminall 74.3 1.4 4.7E-05 36.0 2.1 27 239-265 141-167 (222)
397 3pq1_A Poly(A) RNA polymerase; 73.7 1.9 6.5E-05 39.8 3.0 34 228-262 54-87 (464)
398 3fut_A Dimethyladenosine trans 67.7 15 0.00051 31.1 7.2 101 25-126 23-139 (271)
399 2l08_A Regulator of nonsense t 65.1 3.7 0.00013 29.3 2.4 30 228-257 10-39 (97)
400 1wey_A Calcipressin 1; structu 53.8 14 0.00049 26.6 3.8 34 227-260 5-43 (104)
401 2e1f_A Werner syndrome ATP-dep 46.0 32 0.0011 24.5 4.8 72 17-89 24-96 (103)
402 1wwh_A Nucleoporin 35, nucleop 39.7 35 0.0012 25.1 4.1 33 226-259 23-55 (119)
403 3tqs_A Ribosomal RNA small sub 39.0 51 0.0017 27.4 5.7 99 31-129 11-129 (255)
404 2ko4_B General control protein 33.2 14 0.00047 20.6 0.7 13 23-35 16-28 (34)
405 2dgz_A Werner syndrome protein 31.7 46 0.0016 24.1 3.7 74 16-89 30-103 (113)
406 4e8u_A Putative uncharacterize 31.0 1.1E+02 0.0038 23.9 6.0 47 97-143 13-73 (172)
407 2g0c_A ATP-dependent RNA helic 30.5 47 0.0016 21.7 3.4 58 107-167 12-74 (76)
408 3ts2_A Protein LIN-28 homolog 28.1 17 0.00057 27.9 0.7 28 111-140 2-29 (148)
409 3fut_A Dimethyladenosine trans 25.9 66 0.0023 27.0 4.2 33 228-261 111-143 (271)
410 3uzu_A Ribosomal RNA small sub 22.4 34 0.0012 28.9 1.7 34 228-261 115-148 (279)
411 4eyt_A Telomerase associated p 20.4 2.2E+02 0.0076 19.7 7.7 57 94-152 10-66 (129)
No 1
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=5.4e-25 Score=177.43 Aligned_cols=118 Identities=19% Similarity=0.355 Sum_probs=106.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC------eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~------~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.++|||+|||+++++++|+++|++||.|..|.+.+++ |||||+|.+.++|..|+..|+|..+.|++|.|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999997744 899999999999999999999999999999999985
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
... .....++|||+|||+.+|+++|+++|
T Consensus 81 ~~~---------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 81 PSS---------------------------------------------------ASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp CCC---------------------------------------------------GGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred CCc---------------------------------------------------ccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 330 01134789999999999999999999
Q ss_pred hhcCCeeEEEEecCC
Q psy3343 249 KKCGPIASVTVARKK 263 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~ 263 (274)
++||.|.++++++++
T Consensus 110 ~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 110 SQYGRIITSRILVDQ 124 (167)
T ss_dssp GGGSCEEEEEEEECT
T ss_pred HhcCCEeEEEEEecC
Confidence 999999999999886
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=6.7e-25 Score=184.78 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=110.6
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Q psy3343 95 SKRIILVKNLP-YRTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172 (274)
Q Consensus 95 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f 172 (274)
++++|||+||| +.+++++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|||..+.|++|.|.|+.....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46899999999 89999999999999999999999884 69999999999999999999999999999999999864421
Q ss_pred cccccccccccccccccccchhhhhccchhhcc-cCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhc
Q psy3343 173 AEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDN-QQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKC 251 (274)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~f 251 (274)
.+.... ..... .+. ...+.... ...... ..........++++|||+|||+++|+++|+++|++|
T Consensus 83 ~p~~~~-------~~~~~---~~~-~~~~~~~~~~r~~~~----~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~ 147 (205)
T 3tyt_A 83 MPGQSY-------GLEDG---SCS-YKDFSESRNNRFSTP----EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL 147 (205)
T ss_dssp CCCSCC-------BCTTS---CBS-EEECTTCTTCSCSSH----HHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCccc-------ccccC---Ccc-ccccCCCccccccCc----ccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc
Confidence 100000 00000 000 00000000 000000 000001123467899999999999999999999999
Q ss_pred CCe--eEEEEecCCC
Q psy3343 252 GPI--ASVTVARKKD 264 (274)
Q Consensus 252 G~I--~~v~v~~~~~ 264 (274)
|.| .+++|+.++.
T Consensus 148 G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 148 GVKRPTSVKVFSGKS 162 (205)
T ss_dssp TCCCCSEEEECSCCS
T ss_pred CCcceEEEEEEcCCC
Confidence 999 8999998763
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=8.8e-25 Score=176.70 Aligned_cols=121 Identities=26% Similarity=0.350 Sum_probs=108.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
++++|||+|||+++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999998763 3799999999999999999999999999999999985
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
... ...+.++|||+|||+.+|+++|+++|
T Consensus 82 ~~~---------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 82 PGG---------------------------------------------------ESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CCS---------------------------------------------------STTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred CCc---------------------------------------------------ccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 330 11245799999999999999999999
Q ss_pred hhcCCeeEEEEecCC-CCC
Q psy3343 249 KKCGPIASVTVARKK-DPK 266 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~-~~~ 266 (274)
++||.|.++++++++ +++
T Consensus 111 ~~~G~i~~~~i~~~~~~~~ 129 (168)
T 1b7f_A 111 GKYGSIVQKNILRDKLTGR 129 (168)
T ss_dssp TSSSCEEEEEEEECTTTCC
T ss_pred hcCCcEEEEEEEEcCCCCC
Confidence 999999999999987 443
No 4
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=1.2e-24 Score=189.41 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=110.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCc
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFA 173 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~ 173 (274)
...++|||+|||+++|+++|+++|++||.|..|.+.+++|||||+|.+.++|..|+..|+|..+.|++|.|.|+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~---- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH---- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc----
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999741
Q ss_pred ccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCC
Q psy3343 174 EAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 253 (274)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~ 253 (274)
+++|||+|||+.+|+++|+++|++||.
T Consensus 96 -----------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 96 -----------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp -----------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred -----------------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 368999999999999999999999999
Q ss_pred eeEEEEecCCCCCCCC
Q psy3343 254 IASVTVARKKDPKSPG 269 (274)
Q Consensus 254 I~~v~v~~~~~~~~~g 269 (274)
|.+|+|++++++++.|
T Consensus 123 i~~v~i~~~~~g~~~g 138 (261)
T 3sde_A 123 VEKAVVVVDDRGRATG 138 (261)
T ss_dssp EEEEEEEEETTSCEEE
T ss_pred eEEEEeeeCCCCCcCc
Confidence 9999999997766544
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=8.1e-25 Score=177.90 Aligned_cols=125 Identities=26% Similarity=0.330 Sum_probs=106.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--------CCeEEEEEecCHHHHHHHHHHhCCCeeC---CeEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--------YGITGLVEFLQKNQAKAAFNSLAYTKFK---EVPLY 163 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--------~~~~afV~F~~~~~A~~A~~~l~~~~~~---g~~l~ 163 (274)
..++|||+|||+++|+++|+++|++||.|.+|.+++ ++|||||+|.+.++|..|++.|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 358999999999999999999999999999999874 3479999999999999999999998876 56777
Q ss_pred EEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHH
Q psy3343 164 LEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDS 243 (274)
Q Consensus 164 v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~ 243 (274)
+.++... . ....+.++|||+|||+.+|+++
T Consensus 82 ~~~~~~~-------~-------------------------------------------~~~~~~~~l~v~nl~~~~t~~~ 111 (175)
T 3nmr_A 82 MKPADSE-------K-------------------------------------------NNAVEDRKLFIGMISKKCTEND 111 (175)
T ss_dssp EEECGGG-------C-------------------------------------------CSCGGGSEEEEESCCTTCCHHH
T ss_pred Ecccccc-------c-------------------------------------------cccCCCCeEEEcCCCCcCCHHH
Confidence 7765321 0 0112357999999999999999
Q ss_pred HHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 244 IRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 244 L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
|+++|++||.|.+|+|++++++++.|
T Consensus 112 l~~~F~~~G~i~~v~~~~~~~g~~~g 137 (175)
T 3nmr_A 112 IRVMFSSFGQIEECRILRGPDGLSRG 137 (175)
T ss_dssp HHHHHGGGSCEEEEEEEECTTSCEEE
T ss_pred HHHHHHhCCCEEEEEEEECCCCCEEE
Confidence 99999999999999999998765443
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.2e-24 Score=173.63 Aligned_cols=119 Identities=21% Similarity=0.302 Sum_probs=106.2
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 171 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 171 (274)
++|||+|||+++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999763 4899999999999999999999999999999999985330
Q ss_pred CcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhc
Q psy3343 172 FAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKC 251 (274)
Q Consensus 172 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~f 251 (274)
. ....+.++|||+|||+.+|+++|+++|++|
T Consensus 81 ------~-------------------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 111 (166)
T 3md3_A 81 ------Q-------------------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF 111 (166)
T ss_dssp ------C-------------------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS
T ss_pred ------C-------------------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhcc
Confidence 0 022346799999999999999999999999
Q ss_pred CCeeEEEEecCCC
Q psy3343 252 GPIASVTVARKKD 264 (274)
Q Consensus 252 G~I~~v~v~~~~~ 264 (274)
|.|.++.+++++.
T Consensus 112 G~i~~~~i~~~~~ 124 (166)
T 3md3_A 112 PSYLSGHVMWDMQ 124 (166)
T ss_dssp TTEEEEEEEECTT
T ss_pred CCeeEEEEEecCC
Confidence 9999999998854
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=2.1e-24 Score=182.47 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=106.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.+.++|||+|||+++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..+++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34589999999999999999999999999999999763 379999999999999999999999999999999998
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
.... .. ......+|||+|||+.+|+++|+++
T Consensus 93 ~~~~------~~-------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 93 QRDP------SL-------------------------------------------RKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp CCCT------HH-------------------------------------------HHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred cccc------cc-------------------------------------------cccccccceECCcccccHHHHHHHH
Confidence 5330 00 0012368999999999999999999
Q ss_pred hhhcCCeeEEEEecCCCC
Q psy3343 248 FKKCGPIASVTVARKKDP 265 (274)
Q Consensus 248 F~~fG~I~~v~v~~~~~~ 265 (274)
|++||.|.+|+|++++++
T Consensus 124 F~~~G~i~~~~i~~d~~~ 141 (213)
T 4f02_A 124 FSAFGNILSCKVVCDENG 141 (213)
T ss_dssp HGGGSCEEEEEEEEETTE
T ss_pred HhhcCCeEEEEeeccCCC
Confidence 999999999999998654
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=2.5e-24 Score=174.80 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=107.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccC----C-------CeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPF----G-------DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
..++|||+|||+++|+++|+++|++| | .|..+.+.+++|||||+|.+.++|..|+ .|+|..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8899999999999999999999999999 8999999999999
Q ss_pred EEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHH
Q psy3343 164 LEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDS 243 (274)
Q Consensus 164 v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~ 243 (274)
|.++... . .....++|||+|||+.+|+++
T Consensus 82 v~~~~~~-------~--------------------------------------------~~~~~~~l~v~nlp~~~t~~~ 110 (172)
T 2g4b_A 82 IRRPHDY-------Q--------------------------------------------PLPGAHKLFIGGLPNYLNDDQ 110 (172)
T ss_dssp EECCSSC-------C--------------------------------------------CCTTTTCEEEECCCTTCCHHH
T ss_pred ecCCccc-------C--------------------------------------------CCCCCCEEEEEcCCCcCCHHH
Confidence 9986422 0 112357999999999999999
Q ss_pred HHHHhhhcCCeeEEEEecCC-CCCC
Q psy3343 244 IRRHFKKCGPIASVTVARKK-DPKS 267 (274)
Q Consensus 244 L~~~F~~fG~I~~v~v~~~~-~~~~ 267 (274)
|+++|++||.|.+|+|++++ ++++
T Consensus 111 l~~~f~~~G~v~~v~i~~~~~~g~~ 135 (172)
T 2g4b_A 111 VKELLTSFGPLKAFNLVKDSATGLS 135 (172)
T ss_dssp HHHHHHTTSCEEEEEEEECTTTCSE
T ss_pred HHHHHHhcCCceEEEEEecCCCCCc
Confidence 99999999999999999986 4443
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.91 E-value=5.2e-24 Score=176.49 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=105.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 445699999999999999999999999999999998763 47999999999999999975 99999999999999
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
+.... ... . .....+.++|||+|||+++|+++|++
T Consensus 89 ~~~~~----~~~---------~--------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~ 123 (196)
T 1l3k_A 89 AVSRE----DSQ---------R--------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRD 123 (196)
T ss_dssp CCC--------------------------------------------------------CCSEEEEECCTTTCCHHHHHH
T ss_pred ccCcc----ccc---------c--------------------------------cccCCCcceEEEeCCCCCCCHHHHHH
Confidence 85330 000 0 00123457999999999999999999
Q ss_pred HhhhcCCeeEEEEecCCC
Q psy3343 247 HFKKCGPIASVTVARKKD 264 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~~~ 264 (274)
+|++||.|.+|+|++++.
T Consensus 124 ~F~~~G~i~~v~i~~~~~ 141 (196)
T 1l3k_A 124 YFEQYGKIEVIEIMTDRG 141 (196)
T ss_dssp HHTTTSCEEEEEEEECTT
T ss_pred HHhcCCCeEEEEEeecCC
Confidence 999999999999999863
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.91 E-value=1.9e-23 Score=173.44 Aligned_cols=137 Identities=14% Similarity=0.202 Sum_probs=108.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccC----C-------CeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPF----G-------DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
..++|||+|||+++++++|+++|++| | .|..+.+.+++|||||+|.+.++|.+|+ .|+|..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7888888889999999999999999999 8999999999999
Q ss_pred EEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHH
Q psy3343 164 LEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDS 243 (274)
Q Consensus 164 v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~ 243 (274)
|.|+....-...... . ... . ...........+.++|||+|||+.+|+++
T Consensus 82 v~~~~~~~~~~~~~~----~----~~~------------~-----------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 130 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSE----N----PSV------------Y-----------VPGVVSTVVPDSAHKLFIGGLPNYLNDDQ 130 (198)
T ss_dssp EECCCCCCCCCCSSS----C----SSC------------C-----------CTTSSCCCSSCCCCEEEEECCCTTCCHHH
T ss_pred EeCCCCCCCCCCCcC----C----CcC------------C-----------CCCCccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 999854310000000 0 000 0 00000111234678999999999999999
Q ss_pred HHHHhhhcCCeeEEEEecCC
Q psy3343 244 IRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 244 L~~~F~~fG~I~~v~v~~~~ 263 (274)
|+++|++||.|.+|+|++++
T Consensus 131 l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 131 VKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp HHHHHHTBSCEEEEEEEECT
T ss_pred HHHHHHHcCCccEEEEeecC
Confidence 99999999999999999986
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=2.3e-24 Score=190.08 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=140.4
Q ss_pred ccccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHhh------hhhh----hHHHHHHHHHHHCCCCccccch
Q psy3343 25 HTWNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRLA------MGET----EIVEKTRAFLEENGVQLDAFNQ 89 (274)
Q Consensus 25 ~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~a------l~e~----~~~~~~~~~l~~~g~~~~~~~~ 89 (274)
..-.+|||+..+ +.++..+|.+ |....|++. .+++ .-.+++..++..+|..+..-.-
T Consensus 39 ~~~~~l~V~nLp--------~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 110 (292)
T 2ghp_A 39 RELTTVLVKNLP--------KSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEI 110 (292)
T ss_dssp ---CEEEEEEEC--------TTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCC--------CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEE
Confidence 456788888774 6677666654 433334331 2333 3356666666666655432211
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHccccCC-CeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 90 VVEARSKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 90 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
.......++|||+|||+.+++++|+++|++|| .|..|.++. .+|||||+|.+.++|..|+..|+|..+.|++|.
T Consensus 111 ~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 111 IVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp EEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 12234679999999999999999999999999 999999976 458999999999999999999999999999999
Q ss_pred EEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCC-CCHH
Q psy3343 164 LEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFN-STED 242 (274)
Q Consensus 164 v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~-~tee 242 (274)
|.|+.... ... +. .....+.++|||+|||+. +|++
T Consensus 191 v~~a~~~~----~~~----~~------------------------------------~~~~~~~~~l~v~nlp~~~~t~~ 226 (292)
T 2ghp_A 191 TKVSNPLE----KSK----RT------------------------------------DSATLEGREIMIRNLSTELLDEN 226 (292)
T ss_dssp EEECCCC-----------------------------------------------------CCTTTEEEEEEECTTTCCHH
T ss_pred EEECCCCc----ccc----cc------------------------------------cccCCCCceEEEECCCcccCCHH
Confidence 99985330 000 00 012335689999999999 9999
Q ss_pred HHHHHhhhcCCeeEEEEecCCC--CCCCC
Q psy3343 243 SIRRHFKKCGPIASVTVARKKD--PKSPG 269 (274)
Q Consensus 243 ~L~~~F~~fG~I~~v~v~~~~~--~~~~g 269 (274)
+|+++|++||.|.+|+|+++++ +++.|
T Consensus 227 ~l~~~F~~~G~v~~v~i~~~~~~tg~~~g 255 (292)
T 2ghp_A 227 LLRESFEGFGSIEKINIPAGQKEHSFNNC 255 (292)
T ss_dssp HHHHHHGGGSCEEEEECCSCCC---CCCE
T ss_pred HHHHHHhccCCeeEEEEEecCCcCCCCce
Confidence 9999999999999999999887 55544
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=8.8e-24 Score=185.61 Aligned_cols=187 Identities=19% Similarity=0.212 Sum_probs=138.8
Q ss_pred cccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh--hhhhh----hHHHHHHHHHH-HCCCCccccc-hhhh
Q psy3343 26 TWNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL--AMGET----EIVEKTRAFLE-ENGVQLDAFN-QVVE 92 (274)
Q Consensus 26 ~wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~--al~e~----~~~~~~~~~l~-~~g~~~~~~~-~~~~ 92 (274)
.=.+|||+... ..+++.+|.+ | ...+++ ..|++ .-.+.+...+. .+|..+.... ....
T Consensus 21 ~~~~l~V~nLp--------~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 21 NRRKILIRGLP--------GDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp CCCEEEEECCC--------TTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCC--------CCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 33578888774 6677777655 3 222222 22333 23445555553 3665433111 0112
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 445689999999999999999999999999999988752 47999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCC-CHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNS-TEDSIR 245 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~-tee~L~ 245 (274)
+... .. .....+.++|||+|||+++ |+++|+
T Consensus 172 a~~~------~~------------------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~ 203 (284)
T 3smz_A 172 TDAG------QL------------------------------------------TPALLHSRCLCVDRLPPGFNDVDALC 203 (284)
T ss_dssp CCGG------GC------------------------------------------CTTTTSCSEEEEECCCTTCCCHHHHH
T ss_pred CCCC------CC------------------------------------------CcccCCccEEEEecCCcccCCHHHHH
Confidence 8532 00 0022356899999999995 999999
Q ss_pred HHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 246 RHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 246 ~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
++|++||.|.+|+|+++++|++.|
T Consensus 204 ~~f~~~G~i~~v~i~~~~~g~~~g 227 (284)
T 3smz_A 204 RALSAVHSPTFCQLACGQDGQLKG 227 (284)
T ss_dssp HHTCSSSCCSEEEEEECSSCCEEE
T ss_pred HHhhCCCCeEEEEEEECCCCCccc
Confidence 999999999999999998776544
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=4.5e-23 Score=181.08 Aligned_cols=114 Identities=24% Similarity=0.383 Sum_probs=106.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f 172 (274)
.++.++|||+|||+++|+++|+++|+.|| |..|.+.+++|||||+|.+.++|..|+..|+|..+.|++|.|.|++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~--- 94 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT--- 94 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC---
Confidence 34579999999999999999999999999 99999988899999999999999999999999999999999998642
Q ss_pred cccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcC
Q psy3343 173 AEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCG 252 (274)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG 252 (274)
.++|||+|||+++|+++|+++|++||
T Consensus 95 ------------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 95 ------------------------------------------------------DALLCVANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp ------------------------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred ------------------------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcC
Confidence 36899999999999999999999999
Q ss_pred CeeEEEEecCCC
Q psy3343 253 PIASVTVARKKD 264 (274)
Q Consensus 253 ~I~~v~v~~~~~ 264 (274)
.|.+|+|++++.
T Consensus 121 ~i~~~~i~~~~~ 132 (284)
T 3smz_A 121 SLERCFLVYSER 132 (284)
T ss_dssp CEEEEEEEECTT
T ss_pred CeeEEEEEeeCC
Confidence 999999998863
No 14
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=3.1e-23 Score=174.41 Aligned_cols=130 Identities=17% Similarity=0.230 Sum_probs=106.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||+|||+++|+++|+++|++||.|..|.+++ .+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 358999999999999999999999999999999976 35899999999999999999999999999999999875
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
........ .. . . .......++|||+|||+++|+++|+++|
T Consensus 107 ~~~~~~~~----------~~----------~-~-------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 107 NIGQAQPI----------ID----------Q-L-------------------AEEARAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp CCGGGHHH----------HH----------H-H-------------------HHHHTTSCEEEEECCCTTCCHHHHHHHH
T ss_pred Cccccchh----------hh----------h-h-------------------hcccCCCcEEEEeCCCCcCCHHHHHHHH
Confidence 43100000 00 0 0 0011245799999999999999999999
Q ss_pred hhcCCeeEEEEecCCC
Q psy3343 249 KKCGPIASVTVARKKD 264 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~~ 264 (274)
++||.|.+|+|++++.
T Consensus 147 ~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 147 EAFGKIKSATLARDPT 162 (216)
T ss_dssp TTSSCEEEEEEEECTT
T ss_pred hccCCeeEEEEEecCC
Confidence 9999999999999864
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.90 E-value=6.8e-24 Score=171.42 Aligned_cols=122 Identities=12% Similarity=0.236 Sum_probs=104.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|..|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 4689999999999999999999999999999999763 4899999999999999998 4678999999998874
Q ss_pred CCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHh
Q psy3343 169 EGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHF 248 (274)
Q Consensus 169 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F 248 (274)
.. .. ..+.++|||+|||+++|+++|+++|
T Consensus 80 ~~------~~---------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 80 PR------DE---------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp CH------HH---------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred ch------hh---------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHH
Confidence 22 00 0124689999999999999999999
Q ss_pred hhcCCeeEEEEecCCC-CCCCC
Q psy3343 249 KKCGPIASVTVARKKD-PKSPG 269 (274)
Q Consensus 249 ~~fG~I~~v~v~~~~~-~~~~g 269 (274)
++||.|.+|+|++++. +++.|
T Consensus 109 ~~~G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 109 SQWGTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp HTTSCCSEEECCCSSSSSTTSE
T ss_pred HhCccEEEEEEEEcCCCCccce
Confidence 9999999999999864 44443
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=1.6e-22 Score=168.29 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=110.1
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Q psy3343 95 SKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172 (274)
Q Consensus 95 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f 172 (274)
++++|||+|||+ ++++++|+++|++||.|..|.+.++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+.....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 468999999999 9999999999999999999999886 58999999999999999999999999999999999864411
Q ss_pred cccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcC
Q psy3343 173 AEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCG 252 (274)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG 252 (274)
....... ...... ..+..... . ...............++++|||+|||+.+|+++|+++|++||
T Consensus 82 ~~~~~~~---~~~~~~----------~~~~~~~~--~-r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 145 (198)
T 1qm9_A 82 QLPREGQ---EDQGLT----------KDYGNSPL--H-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 145 (198)
T ss_dssp CCSSSSS---SSSSCE----------EESSCCCT--T-SSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CCCCcCC---cccccc----------ccccCCch--h-hccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 1000000 000000 00000000 0 000000000112234678999999999999999999999999
Q ss_pred -CeeEEEEecCC
Q psy3343 253 -PIASVTVARKK 263 (274)
Q Consensus 253 -~I~~v~v~~~~ 263 (274)
.|.+|+|+.+.
T Consensus 146 ~~v~~v~i~~~~ 157 (198)
T 1qm9_A 146 GVVKGFKFFQKD 157 (198)
T ss_dssp SCCCEEEESSTT
T ss_pred CCceEEEEEeCC
Confidence 99999997643
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.89 E-value=2.9e-22 Score=171.04 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=111.6
Q ss_pred hcCCCcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 92 EARSKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.....++|||+|||+ ++++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|++.|+|..+.|++|.|.|+..
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345679999999999 9999999999999999999999886 49999999999999999999999999999999999864
Q ss_pred CCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhh
Q psy3343 170 GVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 249 (274)
Q Consensus 170 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~ 249 (274)
.......... ...... ..+...... ...............++++|||+|||+.+|+++|+++|+
T Consensus 110 ~~~~~~~~~~---~~~~~~----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~ 173 (229)
T 2adc_A 110 QNVQLPREGQ---EDQGLT----------KDYGNSPLH---RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS 173 (229)
T ss_dssp CCCCCCCSSS---STTTTE----------EECTTCSSC---CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH
T ss_pred ccccCccccc---cccccc----------cccccCccc---ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 4111100000 000000 000000000 000000000112234678999999999999999999999
Q ss_pred hcC-CeeEEEEecC
Q psy3343 250 KCG-PIASVTVARK 262 (274)
Q Consensus 250 ~fG-~I~~v~v~~~ 262 (274)
+|| .|.+|+|+.+
T Consensus 174 ~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 174 SNGGVVKGFKFFQK 187 (229)
T ss_dssp TTSCCEEEEEECSS
T ss_pred HcCCCeeEEEEEEC
Confidence 999 9999999653
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.89 E-value=2.7e-22 Score=175.89 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=71.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHH----HccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLK----ALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.+..++|||+|||+++++++|+ ++|++||.|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4567999999999999999976 8999999999999886 46899999999999999999999999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 86 ~a~~~ 90 (282)
T 3pgw_A 86 YAKTD 90 (282)
T ss_pred EeccC
Confidence 99644
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=1.4e-22 Score=178.71 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=100.7
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..+..++|||+|||+++|+++|+++|+.||.|..|.|.+ ++|||||+|.+.++|..|+. ++|..+.|++|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 456779999999999999999999999999999999987 46899999999999999995 9999999999999986
Q ss_pred cCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHHH
Q psy3343 168 PEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH 247 (274)
Q Consensus 168 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~ 247 (274)
. .++|||+|||+.+|+++|+++
T Consensus 116 ~----------------------------------------------------------~~~l~v~nlp~~~t~~~l~~~ 137 (292)
T 2ghp_A 116 T----------------------------------------------------------ECTLWMTNFPPSYTQRNIRDL 137 (292)
T ss_dssp C----------------------------------------------------------SCEEEEECCCTTCCHHHHHHH
T ss_pred C----------------------------------------------------------CCEEEEECCCCCCCHHHHHHH
Confidence 2 368999999999999999999
Q ss_pred hhhcC-CeeEEEEecCCCCCCCC
Q psy3343 248 FKKCG-PIASVTVARKKDPKSPG 269 (274)
Q Consensus 248 F~~fG-~I~~v~v~~~~~~~~~g 269 (274)
|++|| .|.+|+|+++++++..|
T Consensus 138 f~~~G~~i~~v~i~~~~~~~~~g 160 (292)
T 2ghp_A 138 LQDINVVALSIRLPSLRFNTSRR 160 (292)
T ss_dssp HHHTTCCCCEEECC-------CC
T ss_pred HHHhCCCeEEEEEEeCCCCCcce
Confidence 99999 99999999988766554
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1e-22 Score=155.82 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|+|..+.|++|.|.|+..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4689999999999999999999999999999999763 589999999999999999999999999999999998543
No 21
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.87 E-value=1e-21 Score=160.01 Aligned_cols=124 Identities=25% Similarity=0.249 Sum_probs=100.9
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE-----EEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR-----VLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-----v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
.....++|||+|||+++++++|+++|+.||.+.. .....++|||||+|.+.++|.+|++ |+|..+.|++|.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3566799999999999999999999999986544 3333367999999999999999995 999999999999999
Q ss_pred ecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccccccccccCCCCCCceEEEeCCCCCCCHHHHHH
Q psy3343 167 APEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 246 (274)
Q Consensus 167 a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~ 246 (274)
+.... . ....+.++|||+|||+.+|+++|++
T Consensus 88 ~~~~~------~-------------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~ 118 (175)
T 1fje_B 88 PKGRD------S-------------------------------------------KKVRAARTLLAKNLSFNITEDELKE 118 (175)
T ss_dssp CCCSS------C-------------------------------------------STTGGGGEEEEESCCSSCCHHHHHH
T ss_pred CCCcc------c-------------------------------------------cccccCCEEEEeCCCCCCCHHHHHH
Confidence 85430 0 0112357999999999999999999
Q ss_pred HhhhcCCeeEEEEecCCCCCCCC
Q psy3343 247 HFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 247 ~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
+|++||.|..+ ..++++.|
T Consensus 119 ~F~~~g~v~~~----~~~~~~~g 137 (175)
T 1fje_B 119 VFEDALEIRLV----SQDGKSKG 137 (175)
T ss_dssp HCTTCSEEEEE----CSSSSCCS
T ss_pred HHHhcCeEEEe----cCCCCCce
Confidence 99999998877 44444444
No 22
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=132.07 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=73.3
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCe--eCCeEEEEEEecC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK--FKEVPLYLEWAPE 169 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~--~~g~~l~v~~a~~ 169 (274)
...++++|||+|||+++|+++|+++|++||.|.+|.+++++|||||+|.+.++|..|++.|++.. +.|++|+|+|+..
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 45567999999999999999999999999999999999999999999999999999999999875 7899999999864
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 4
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=131.43 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=70.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...+++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|+|..+.|++|.|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999763 37999999999999999999999999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
|.
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 84
No 24
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=135.77 Aligned_cols=83 Identities=58% Similarity=0.984 Sum_probs=78.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f 172 (274)
.++.++|||+|||+.+++++|+++|++||.|..|.|+++++||||+|.+.++|..|+..|+|..|.|++|+|+|++...|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccc
Q psy3343 173 AEA 175 (274)
Q Consensus 173 ~~~ 175 (274)
...
T Consensus 87 ~~~ 89 (111)
T 1whx_A 87 GAA 89 (111)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 25
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=133.81 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=72.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~~~ 170 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|.|++++|||||+|.+.++|..|++.|++ ..|.|++|+|.|+..+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 55679999999999999999999999999999999999999999999999999999998864 7899999999999654
No 26
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=6.6e-19 Score=126.85 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
.....|||+||++.+|+++|+++|.+||+|.++.+..++|||||+|.++++|.+|++.||+..+.|++|.|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999983
No 27
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=127.30 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=72.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHh--CCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL--AYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l--~~~~~~g~~l~v~~a~~~ 170 (274)
..+.++|||+|||+.+++++|+++|++||.|..|.+++++|||||+|.+.++|..|++.| ++..+.|++|+|.|+..+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 345689999999999999999999999999999999999999999999999999999977 467899999999999655
No 28
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-19 Score=131.14 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=71.6
Q ss_pred cCCCcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEEecC
Q psy3343 93 ARSKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLEWAPE 169 (274)
Q Consensus 93 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~~ 169 (274)
..+.++|||+|||+ .+|+++|+++|++||.|.+|.|+++++||||+|.+.++|..|++.|++ ..|.|++|+|.|+..
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34569999999999 999999999999999999999999999999999999999999999986 459999999999964
No 29
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=6.2e-19 Score=134.37 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
...++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|..|+..|+|..+.|+.|.|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4568999999999999999999999999999999976 35899999999999999999999999999999999984
No 30
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=131.85 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=76.3
Q ss_pred CCCCccccchhhhcCCCcEEEEeCCCCC-CCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--Ce
Q psy3343 80 NGVQLDAFNQVVEARSKRIILVKNLPYR-TLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TK 156 (274)
Q Consensus 80 ~g~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~ 156 (274)
+|.....+.. ...+.++|||+|||++ +++++|+++|++||.|.+|.|.+++|||||+|.+.++|..|++.|++ ..
T Consensus 11 ~~~~~k~~~~--~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~ 88 (112)
T 1x4f_A 11 EGKPDQKFDQ--KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALW 88 (112)
T ss_dssp CCCCCCCCCC--SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCC
T ss_pred cCChhhhccc--cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 3444444432 3556799999999998 99999999999999999999999999999999999999999998864 56
Q ss_pred eCCeEEEEEEecCC
Q psy3343 157 FKEVPLYLEWAPEG 170 (274)
Q Consensus 157 ~~g~~l~v~~a~~~ 170 (274)
|.|++|+|.|+...
T Consensus 89 l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 89 FQGRCVKVDLSEKY 102 (112)
T ss_dssp SSSSCCEEEEECSC
T ss_pred ECCEEEEEEECccc
Confidence 99999999999644
No 31
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=9.9e-19 Score=130.13 Aligned_cols=74 Identities=20% Similarity=0.163 Sum_probs=70.5
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999986 899999999999999999999999999999999999644
No 32
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=128.48 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCC--eeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYT--KFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~--~~~g~~l~v~~a~~~ 170 (274)
..+.++|||+|||+++++++|+++|++||.|..|.|++++|||||+|.+.++|..|++.|++. .+.|++|+|+|+..+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 445689999999999999999999999999999999999999999999999999999988764 599999999999654
No 33
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=131.12 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=72.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a~~~ 170 (274)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++|||||+|.+.++|..|++.|++ ..|.|++|+|.|+..+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 44568999999999999999999999999999999999999999999999999999998874 6899999999999655
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=127.63 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=71.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|||..+.|++|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999998753 48999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9644
No 35
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=121.47 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=72.3
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL-AYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~a 167 (274)
.....++|||+|||+++++++|+++|++||.|..|.+++++|||||+|.+.++|..|+..| ++..+.|++|.|.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3456799999999999999999999999999999999999999999999999999999999 999999999999997
No 36
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=123.70 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=73.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+.+++++|+++|++||.|..|.++++++||||+|.+.++|.+|++.|+|..+.|++|.|.|+...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 445689999999999999999999999999999999999999999999999999999999999999999999998644
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=2.4e-17 Score=117.90 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=69.3
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
.+|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999764 589999999999999999999999999999999998643
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=123.86 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=67.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCC--eeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCC----eeCCeE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGD--LGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYT----KFKEVP 161 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~----~~~g~~ 161 (274)
..-.+|||+|||+++|+++|+++|++||. +.+|++++ ++|||||+|.+.++|.+|++.|+|. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34489999999999999999999999995 57888876 3589999999999999999999996 589999
Q ss_pred EEEEEec
Q psy3343 162 LYLEWAP 168 (274)
Q Consensus 162 l~v~~a~ 168 (274)
|.|+||.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999985
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=124.74 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCC-CeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhC-CCeeCCeEEEEEEe
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLA-YTKFKEVPLYLEWA 167 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~-~~~~~g~~l~v~~a 167 (274)
+++|||+|||+++|+++|+++|++|| .|.+|+|++ ++|||||+|.+.++|.+|++.++ +..+.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 799999876 35899999999999999999874 56799999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.5e-17 Score=118.42 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=70.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|+|..+.|++|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999998652 58999999999999999999999999999999999
Q ss_pred e
Q psy3343 167 A 167 (274)
Q Consensus 167 a 167 (274)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 41
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=123.92 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
...++|||+|||+++++++|+++|++||.|.+|.+.+++|||||+|.+.++|..|+..|+|..+.|+.|.|.|+..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999853
No 42
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=121.98 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=73.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeC--CeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK--EVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||.|..|.+.++++||||+|.+.++|.+|+..|++..+. |++|.|.|+..+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 345689999999999999999999999999999999998999999999999999999999999999 999999999644
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=118.45 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4689999999999999999999999999999999764 4799999999999999999999999999999999985
Q ss_pred C
Q psy3343 169 E 169 (274)
Q Consensus 169 ~ 169 (274)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-17 Score=120.45 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=73.4
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|++..|.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999999874 689999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=4.1e-17 Score=120.22 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3589999999999999999999999999999999764 5899999999999999999999999999999999996
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
.+
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 46
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=124.14 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=74.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+.+++++|+++|++||.|..|.++++++||||+|.+.++|..|+..|+|..+.|++|.|.|+...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 455699999999999999999999999999999999999999999999999999999999999999999999999654
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=121.44 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHH----HccccCCCeeEEEeeCC---CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLK----ALFEPFGDLGRVLVPPY---GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~l~~~---~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...++|||+|||+++++++|+ ++|++||.|.+|.|+.+ ++||||+|.+.++|.+|++.|+|..+.|++|.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999 99999999999999875 78999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9644
No 48
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=126.11 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=71.4
Q ss_pred CCCcEEEE--eCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCee-----CCeEEEEEE
Q psy3343 94 RSKRIILV--KNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKF-----KEVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~-----~g~~l~v~~ 166 (274)
.+.++||| +|||+++++++|+++|++||.|.+|.|++++|||||+|.+.++|.+|++.|||..+ .|++|+|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45688999 66999999999999999999999999998999999999999999999999999998 789999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..-
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8644
No 49
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.6e-17 Score=119.45 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=73.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 171 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 171 (274)
.++.++|||+|||+++++++|+++|++| .|..|.++..+|||||+|.+.++|..|++.|+|..+.|++|.|+|++.+.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 3567899999999999999999999999 99999998888999999999999999999999999999999999998663
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=117.10 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..++|||+|||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999865 3579999999999999999999999999999999998
Q ss_pred cC
Q psy3343 168 PE 169 (274)
Q Consensus 168 ~~ 169 (274)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 51
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=122.46 Aligned_cols=77 Identities=29% Similarity=0.291 Sum_probs=72.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCC-----eEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE-----VPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l~v~~a 167 (274)
.+..++|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|..|++.|++..|.| +.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456799999999999999999999999999999999988 899999999999999999999999999 99999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 91 ~~~ 93 (108)
T 1x4c_A 91 GPR 93 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 52
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-17 Score=121.04 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=72.9
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.....++|||+|||+.+++++|+++|++||.|..|.|+. .++||||+|.+.++|.+|+..|++..+.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345679999999999999999999999999999999987 3589999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 644
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=119.97 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=70.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++..+.|++|.|.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 445699999999999999999999999999999999874 479999999999999999999999999999999998
Q ss_pred c
Q psy3343 168 P 168 (274)
Q Consensus 168 ~ 168 (274)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=119.88 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=72.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345699999999999999999999999999999999764 48999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9654
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=121.94 Aligned_cols=79 Identities=35% Similarity=0.623 Sum_probs=73.2
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-------CeEEEEEecCHHHHHHHHHHh-CCCeeCCeEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-------GITGLVEFLQKNQAKAAFNSL-AYTKFKEVPLY 163 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-------~~~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~ 163 (274)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3556799999999999999999999999999999999775 589999999999999999999 99999999999
Q ss_pred EEEecCC
Q psy3343 164 LEWAPEG 170 (274)
Q Consensus 164 v~~a~~~ 170 (274)
|.|+...
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9999644
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=120.03 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEE-EeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV-LVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
.+.++|||+|||+++++++|+++|++||.|..| .++.+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456999999999999999999999999999998 88764 58999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8644
No 57
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=118.29 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999874 479999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
..+
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 58
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=117.99 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=71.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|..|+..|++..+.|++|.|.|+...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 3456999999999999999999999999999999998 689999999999999999999999999999999998644
No 59
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=120.04 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
...++|||+|||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|..|+..|+|..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999874 2479999999999999999999999999999999
Q ss_pred EEecCC
Q psy3343 165 EWAPEG 170 (274)
Q Consensus 165 ~~a~~~ 170 (274)
.|+...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998644
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=118.06 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=70.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ ++||||+|.+.++|.+|++.|++..+.|++|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456699999999999999999999999999999999763 47999999999999999999999999999999999
Q ss_pred e
Q psy3343 167 A 167 (274)
Q Consensus 167 a 167 (274)
|
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 7
No 61
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=119.83 Aligned_cols=78 Identities=28% Similarity=0.457 Sum_probs=72.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 445699999999999999999999999999999999764 37999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9654
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-17 Score=119.03 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=71.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC-----eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-----ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~-----~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++++++|+++|++||.|..|.++.++ |||||+|.+.++|.+|+..|+|..+.|++|.|.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4556999999999999999999999999999999998743 89999999999999999999999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 63
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=120.71 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=72.5
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC---CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~---~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.|++..|.|++|.|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3456699999999999999999999999999999999774 5799999999999999999999999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=120.39 Aligned_cols=78 Identities=24% Similarity=0.245 Sum_probs=72.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|..|+..|++..+.|++|.|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 345699999999999999999999999999999999854 6899999999999999999999999999999999996
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=122.13 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=72.9
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.....++|||+|||+++++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3456699999999999999999999999999999999864 689999999999999999999999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 644
No 66
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=120.55 Aligned_cols=78 Identities=26% Similarity=0.323 Sum_probs=72.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|++.|++..|.|++|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 446799999999999999999999999999999999763 58999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9644
No 67
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=122.78 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HccccCCCeeEEEeeCCC---------eEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLK---ALFEPFGDLGRVLVPPYG---------ITGLVEFLQKNQAKAAFNSLAYTKFKEVP 161 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~l~~~~---------~~afV~F~~~~~A~~A~~~l~~~~~~g~~ 161 (274)
...++|||+|||+++++++|+ ++|++||.|..|.++++. |||||+|.+.++|.+|++.|+|..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999998632 79999999999999999999999999999
Q ss_pred EEEEEecCC
Q psy3343 162 LYLEWAPEG 170 (274)
Q Consensus 162 l~v~~a~~~ 170 (274)
|.|.|+..+
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999755
No 68
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.5e-16 Score=117.75 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=71.0
Q ss_pred hcCCCcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 92 EARSKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..+..++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..|+|..+.|+.|.|+|+...
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 355679999999998 99999999999999999999995 789999999999999999999999999999999998543
No 69
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=5.5e-17 Score=123.08 Aligned_cols=77 Identities=23% Similarity=0.226 Sum_probs=71.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCC-CeeEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
....++|||+|||+++++++|+++|++|| .|..+.+.. .+|||||+|.+.++|.+|++.|+|..|.|++|.|+++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 45568999999999999999999999999 899999863 679999999999999999999999999999999999853
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1e-16 Score=119.98 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCC---eEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKE---VPLYLE 165 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g---~~l~v~ 165 (274)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..+.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45699999999999999999999999999999999875 5899999999999999999999999998 999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 99644
No 71
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=116.45 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=70.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||.|..|.+.++ ||||+|.+.++|..|+..|++..+.|+.|.|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 455699999999999999999999999999999999854 9999999999999999999999999999999999644
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=1.3e-16 Score=121.45 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=72.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456799999999999999999999999999999999864 47999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9654
No 73
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.2e-16 Score=120.69 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=71.8
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
.....++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..|+|..+.|++|.|.|+...
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 45667999999999999999999999999999999998 789999999999999999999999999999999998644
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.6e-16 Score=119.33 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=71.3
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456799999999999999999999999999999999853 57999999999999999999999999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=6.2e-17 Score=118.10 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=71.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
....++|||+|||+++++++|+++|++||.|..|.+++ .++||||+|.+.++|..|+..|++..+.|++|.|.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44569999999999999999999999999999999986 35899999999999999999999999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 76
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=9e-17 Score=118.41 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=71.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHH----HccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLK----ALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
..+.++|||+|||+++++++|+ ++|++||.|..|.++. .+|||||+|.+.++|..|+..|+|..+.|++|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567999999999999999999 9999999999999974 56899999999999999999999999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 85 ~a~~~ 89 (97)
T 1nu4_A 85 YAKTD 89 (97)
T ss_dssp ECSSC
T ss_pred EccCC
Confidence 99644
No 77
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.6e-17 Score=121.48 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
...++|||+|||+++|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|..|+. +++..+.|++|.|.|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 3458999999999999999999999999999999987 46899999999999999998 89999999999999975
No 78
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=116.60 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999999753 47999999999999999999999999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 85
No 79
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.3e-16 Score=120.43 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=71.8
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3455689999999999999999999999999999999764 4899999999999999999999999999999999
Q ss_pred EecC
Q psy3343 166 WAPE 169 (274)
Q Consensus 166 ~a~~ 169 (274)
|+..
T Consensus 102 ~a~~ 105 (110)
T 1oo0_B 102 WCFV 105 (110)
T ss_dssp ESEE
T ss_pred Eccc
Confidence 9853
No 80
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=117.24 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=70.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+. |++..+.|++|.|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 345699999999999999999999999999999999763 5899999999999999998 999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9644
No 81
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=119.61 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=72.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.++.+ ++||||+|.+.++|..|++.|++..|.|++|.|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445699999999999999999999999999999999773 57999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 9644
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=119.74 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=72.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445699999999999999999999999999999999763 58999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9644
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=121.27 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=72.8
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
......++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|+|..+.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999999753 479999999999999999999999999999999
Q ss_pred EEecCC
Q psy3343 165 EWAPEG 170 (274)
Q Consensus 165 ~~a~~~ 170 (274)
.|+..+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998643
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=118.29 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=70.1
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE--------EEeeCC------CeEEEEEecCHHHHHHHHHHhCCCee
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR--------VLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKF 157 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~ 157 (274)
.....++|||+|||+++++++|+++|++||.|.. |.++.+ +|||||+|.+.++|..|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456699999999999999999999999999998 888753 47999999999999999999999999
Q ss_pred CCeEEEEEEe
Q psy3343 158 KEVPLYLEWA 167 (274)
Q Consensus 158 ~g~~l~v~~a 167 (274)
.|+.|.|.||
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999997
No 85
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-17 Score=120.48 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=71.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 445689999999999999999999999999999999753 48999999999999999999999999999999999
Q ss_pred ecC
Q psy3343 167 APE 169 (274)
Q Consensus 167 a~~ 169 (274)
+..
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 853
No 86
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.8e-16 Score=114.89 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+ .|+|..+.|++|.|.|+..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 489999999999999999999999999999999763 689999999999999999 8999999999999999854
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=3.7e-17 Score=121.64 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=68.9
Q ss_pred CcEEEEeCCCC------CCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCC-eEE
Q psy3343 96 KRIILVKNLPY------RTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKE-VPL 162 (274)
Q Consensus 96 ~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g-~~l 162 (274)
+++|||+|||+ ++++++|+++|++||.|.+|.|+. ++|||||+|.+.++|.+|++.|+|..+.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58999999999 999999999999999999999975 35899999999999999999999999999 999
Q ss_pred EEEEec
Q psy3343 163 YLEWAP 168 (274)
Q Consensus 163 ~v~~a~ 168 (274)
.|.|+.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 999984
No 88
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=115.72 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=70.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||.|..|.++++ ||||+|.+.++|..|+..|+|..+.|++|.|.|+...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 445699999999999999999999999999999999854 9999999999999999999999999999999998644
No 89
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=119.17 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=72.4
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.....++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456699999999999999999999999999999999773 4799999999999999999999999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98644
No 90
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=118.01 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=70.1
Q ss_pred cCCCcEEEEeCCCC-CCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+ .+++++|+++|++||.|..|.++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+...
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 44579999999999 99999999999999999999996 689999999999999999999999999999999999644
No 91
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=9.8e-17 Score=124.63 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHH----HccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLK----ALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|..|+..|+|..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4456899999999999999876 6999999999999875 46899999999999999999999999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99654
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.6e-16 Score=120.88 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=71.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|++.|++..|.|++|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999998764 37999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8644
No 93
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=119.51 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=72.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhC------CCeeCCe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLA------YTKFKEV 160 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~------~~~~~g~ 160 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 455789999999999999999999999999999999853 5899999999999999999999 9999999
Q ss_pred EEEEEEecCC
Q psy3343 161 PLYLEWAPEG 170 (274)
Q Consensus 161 ~l~v~~a~~~ 170 (274)
+|.|.|+..+
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998644
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=121.06 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=72.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345689999999999999999999999999999999874 389999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=119.07 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=71.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|..|+..|++..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 455799999999999999999999999999999999874 579999999999999999999999999999999998
Q ss_pred cC
Q psy3343 168 PE 169 (274)
Q Consensus 168 ~~ 169 (274)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 96
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.8e-16 Score=121.11 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|+|..+.|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445699999999999999999999999999999999763 58999999999999999999999999999999998
Q ss_pred e
Q psy3343 167 A 167 (274)
Q Consensus 167 a 167 (274)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=3.1e-16 Score=113.24 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=68.2
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.....++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++ +++..+.|++|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999763 4799999999999999996 68889999999999
Q ss_pred Ee
Q psy3343 166 WA 167 (274)
Q Consensus 166 ~a 167 (274)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 98
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=1.7e-16 Score=118.41 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
...++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|++..|.|++|.|.|+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 456899999999999999999999999999999997 459999999999999999999999999999999999644
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-17 Score=116.91 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+|..+.|+.|.+.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999764 589999999999999999999999999999988775
Q ss_pred c
Q psy3343 168 P 168 (274)
Q Consensus 168 ~ 168 (274)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=117.90 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=71.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCee-EEEeeCCC------eEEEEEecCHHHHHHHHHHhCCCeeCCeE----
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLG-RVLVPPYG------ITGLVEFLQKNQAKAAFNSLAYTKFKEVP---- 161 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~l~~~~------~~afV~F~~~~~A~~A~~~l~~~~~~g~~---- 161 (274)
....++|||+|||+++++++|+++|++||.|. .|.+++++ |||||+|.+.++|.+|+..|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34569999999999999999999999999999 99997643 89999999999999999999999999999
Q ss_pred EEEEEecCC
Q psy3343 162 LYLEWAPEG 170 (274)
Q Consensus 162 l~v~~a~~~ 170 (274)
|.|.|+...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998644
No 101
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=114.57 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=71.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|| ++++++|+++|++||.|..|.|...+|||||+|.+.++|.+|+..|+|..+.|++|.|.|+...
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 446699999996 8999999999999999999999988999999999999999999999999999999999999644
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=115.11 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=70.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccC--CCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPF--GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+.+++++|+++|++| |.|..|.++ ++||||+|.+.++|..|+..|+|..|.|++|.|.|+...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4456999999999999999999999999 999999886 569999999999999999999999999999999999644
No 103
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=119.30 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCcEEEEeCCCCCC------CHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCe-EE
Q psy3343 94 RSKRIILVKNLPYRT------LPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEV-PL 162 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~-~l 162 (274)
...++|||+|||+.+ ++++|+++|++||.|..|.|++ ++|||||+|.+.++|..|+..|+|..+.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 7899999999999999999984 468999999999999999999999999998 99
Q ss_pred EEEEecC
Q psy3343 163 YLEWAPE 169 (274)
Q Consensus 163 ~v~~a~~ 169 (274)
.|.|+..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999853
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=119.01 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=71.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCee--------EEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLG--------RVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFK 158 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~ 158 (274)
....++|||+|||+++++++|+++|++||.|. .|.|+.+ +|||||+|.+.++|.+|+..|+|..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999998 5888764 579999999999999999999999999
Q ss_pred CeEEEEEEecCC
Q psy3343 159 EVPLYLEWAPEG 170 (274)
Q Consensus 159 g~~l~v~~a~~~ 170 (274)
|+.|.|.|+...
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998644
No 105
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=116.51 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=69.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
....++|||+|||+++++++|+++|++|| |..|.|+.+ +|||||+|.+.++|.+|+ .|++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34569999999999999999999999999 999999763 579999999999999999 899999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98644
No 106
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=1.7e-16 Score=126.48 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=73.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+..+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 445699999999999999999999999999999999986 899999999999999999999999999999999998643
No 107
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=2.3e-16 Score=121.91 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=72.4
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445689999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 99543
No 108
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=117.24 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=69.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCC-eeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC-CeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGD-LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~-~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||. |..+.+. .++||||+|.+.++|..|+..|+| ..+.|++|.|.|+..+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 345689999999999999999999999999 6666553 578999999999999999999999 9999999999999644
No 109
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=118.82 Aligned_cols=76 Identities=24% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|+|..+.|++|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4589999999999999999999999999999998763 5899999999999999999999999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 44
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=2.5e-16 Score=117.99 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=71.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCee---CCeEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKF---KEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~---~g~~l~ 163 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 455699999999999999999999999999999999873 58999999999999999999999988 899999
Q ss_pred EEEecCC
Q psy3343 164 LEWAPEG 170 (274)
Q Consensus 164 v~~a~~~ 170 (274)
|.|+...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999644
No 111
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=114.21 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=63.9
Q ss_pred CcEEEEeCCCCCC------CHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEE
Q psy3343 96 KRIILVKNLPYRT------LPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEV-PLYL 164 (274)
Q Consensus 96 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~v 164 (274)
+++|||+|||+.+ ++++|+++|++||.|.+|.+++ .+|||||+|.+.++|..|+..|+|..+.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 7899999999999999999985 468999999999999999999999999999 8765
No 112
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=6e-16 Score=120.18 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.4
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CCeE-EEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGIT-GLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~~~-afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~ 170 (274)
..|||+||++.+|+++|+++|++||.|.+|.+.. .+|| |||+|.+.++|..|++.|+|..|.| ++|+|+|+...
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 6778999999999999999999999999998866 5677 9999999999999999999999988 99999999654
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=118.76 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCC-eeEEEee-------CCCeEEEEEecCHHHHHHHHHHhC--CCeeCCeEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGD-LGRVLVP-------PYGITGLVEFLQKNQAKAAFNSLA--YTKFKEVPLY 163 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~l~-------~~~~~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~ 163 (274)
...++|||+|||+++++++|+++|++||. |..|.++ ..+|||||+|.+.++|..|+..|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 356899999999999999999996 5899999999
Q ss_pred EEEecCC
Q psy3343 164 LEWAPEG 170 (274)
Q Consensus 164 v~~a~~~ 170 (274)
|.|+...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999644
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=115.19 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=68.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEee--CCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~--~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+++++++|+++|++||.|. +.+. ..+|||||+|.+.++|..|+..|+|..+.|++|.|.|+..+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34568999999999999999999999999995 4443 46799999999999999999999999999999999998643
No 115
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.6e-16 Score=113.48 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccC----C-------CeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPF----G-------DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPL 162 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l 162 (274)
+..++|||+|||+++++++|+++|++| | .|.++.+.+++|||||+|.+.++|.+|+ .|+|..+.|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 346899999999999999999999999 8 9999999999999999999999999999 999999999999
Q ss_pred EEEE
Q psy3343 163 YLEW 166 (274)
Q Consensus 163 ~v~~ 166 (274)
.|++
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9975
No 116
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=7.3e-16 Score=118.89 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+.+++++|+++|++||.|..|.++. .+|||||+|.+.++|..|+..|+|..+.|++|.|.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34568999999999999999999999999999999987 3589999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 755
No 117
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=8.4e-17 Score=117.24 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=64.6
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCC--CeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFG--DLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
.+|||+|||+++++++|+++|++|| .|.+|.++.+ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999988763 4799999999999999999999999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 118
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.5e-16 Score=116.68 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=67.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..+.++. .+|||||+|.+.++|.+|++.|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 44569999999999999999999999999997666654 248999999999999999999999999999999998
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 119
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.5e-16 Score=118.14 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=71.3
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|++ .|.|++|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3556799999999999999999999999999999999874 47999999999999999999998 8999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99543
No 120
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=7e-16 Score=115.05 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++|| |..|.|+.+ +|||||+|.+.++|..|+ .|++..|.|++|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44569999999999999999999999997 999999764 479999999999999999 8999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8644
No 121
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=116.83 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=68.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..+.++. .+|||||+|.+.++|.+|++.|+|..|.|++|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999997655543 248999999999999999999999999999999999
Q ss_pred ecC
Q psy3343 167 APE 169 (274)
Q Consensus 167 a~~ 169 (274)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 853
No 122
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.5e-16 Score=111.60 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=64.7
Q ss_pred EEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 98 IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 98 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
+|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++ |++..+.|++|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999763 4899999999999999998 9999999999999986
No 123
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=121.50 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=69.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|+|..|.|++|.|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445699999999999999999999999999999999763 58999999999999999999999999999999998
Q ss_pred e
Q psy3343 167 A 167 (274)
Q Consensus 167 a 167 (274)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 124
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=4.6e-16 Score=117.51 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 95 SKRIILVKNLPYR-TLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 95 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
..++|||+|||+. +++++|+++|++||.|..|.+ .++||||+|.+.++|..|+..|++..+.|++|.|.|+..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4489999999999 999999999999999999999 578999999999999999999999999999999999853
No 125
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=117.72 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=71.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHcccc-CCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCe-eCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEP-FGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTK-FKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~-~~g~~l~v~ 165 (274)
....++|||+|||+++++++|+++|++ ||.|..|.|+.+ +|||||+|.+.++|..|+..|++.. +.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345699999999999999999999999 999999999764 5899999999999999999999999 999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
|+...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98544
No 126
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=113.68 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=65.2
Q ss_pred CCcEEEEeCCCCCCCHHH----HHHccccC-CCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 95 SKRIILVKNLPYRTLPTD----LKALFEPF-GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
+.+.|||+|||+.+++++ |+++|++| |.|..| .+|+|||.|.+.++|.+|++.|+|..+.||+|.|.||+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 445699999999999988 55899999 599888 459999999999999999999999999999999999975
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
+
T Consensus 84 ~ 84 (96)
T 2diu_A 84 N 84 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=111.71 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..++ ..+.|++|.|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999999999763 4799999999999999999999 9999999999987
No 128
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=3.6e-16 Score=121.77 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+..|+|..|.|++|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999975 358999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8543
No 129
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.4e-16 Score=117.03 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||+|||+++++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|+ .|+|..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 348999999999999999999999999999999975 3579999999999999999 899999999999999984
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=111.04 Aligned_cols=76 Identities=9% Similarity=0.136 Sum_probs=69.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++++++|+++|++| .|..|.|+.+ +|||||+|.+.++|.+|+. |+|..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4456999999999999999999999999 8999998763 5799999999999999999 9999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 644
No 131
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=123.56 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCC--CeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFG--DLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..++|||+|||+++++++|+++|++|| .|..|.++.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 9999999753 47999999999999999999999999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 132
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=8.5e-16 Score=124.50 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=71.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|++|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445689999999999999999999999999999999864 48999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8543
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=115.62 Aligned_cols=77 Identities=14% Similarity=0.259 Sum_probs=70.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCee--------CC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKF--------KE 159 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~--------~g 159 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345699999999999999999999999999999999764 48999999999999999999999999 57
Q ss_pred eEEEEEEecC
Q psy3343 160 VPLYLEWAPE 169 (274)
Q Consensus 160 ~~l~v~~a~~ 169 (274)
++|.|.|+..
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999853
No 134
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=112.11 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=67.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
...++|||+|||+++++++|+++|++||.|.+|.+.+. +.||||+|.+.++|.+|+. |+|..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 34589999999999999999999999999999855442 2399999999999999999 9999999999999988644
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=112.76 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=67.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++++++|+++|++||.| .++. .+|||||+|.+.++|.+|+..|++..|.|++|.|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4557999999999999999999999999987 3333 3689999999999999999999999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 644
No 136
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-16 Score=121.34 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=71.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999753 57999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9644
No 137
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=117.69 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=66.9
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeE-EEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-GLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~-afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~ 170 (274)
..|||+|||+.+++++|+++|++||.|.+|.|....|| |||+|.+.++|..|++.|+|..|.| ++|.|.||...
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 34679999999999999999999999999988664575 9999999999999999999999987 69999999654
No 138
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.6e-16 Score=115.52 Aligned_cols=73 Identities=27% Similarity=0.300 Sum_probs=66.8
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.+ |..|+..|+|..+.|++|.|.||...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999763 589999999999 99999999999999999999998644
No 139
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=7.5e-16 Score=118.68 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=69.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+ .|+|..|.|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999998753 589999999999999999 799999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 140
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=116.08 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=67.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
....++|||+|||+++++++|+++|++|| |.+|.|+.+ +|||||+|.+.++|.+|+ .|+|..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44569999999999999999999999999 999999763 479999999999999999 899999999999999
Q ss_pred EecC
Q psy3343 166 WAPE 169 (274)
Q Consensus 166 ~a~~ 169 (274)
|+..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9854
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.6e-16 Score=112.96 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=70.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEE-EeeCC--CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV-LVPPY--GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~l~~~--~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
....++|||+|||+++++++|+++|++||.|..| .++.+ .+.|||+|.+.++|..|+..|+|..+.|++|.|.|+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3456899999999999999999999999999999 47664 35699999999999999999999999999999999964
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 142
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=2.3e-15 Score=120.68 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++|+++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..|++..|.|++|.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345699999999999999999999999999999999763 37999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9643
No 143
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=114.64 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=67.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..+ +..+.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 455699999999999999999999999999999999763 479999999999999999975 5999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8644
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.5e-16 Score=124.21 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=70.4
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|++|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 445689999999999999999999999999999999753 47999999999999999999999999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
|.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 84
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=2.3e-15 Score=109.54 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=62.4
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCe--eCCeEEEEEEec
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTK--FKEVPLYLEWAP 168 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~--~~g~~l~v~~a~ 168 (274)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 355679999999999999999999999999999999987 58999999999999983 56655 469999999985
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
.+
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 43
No 146
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=6.4e-16 Score=117.86 Aligned_cols=75 Identities=29% Similarity=0.308 Sum_probs=66.3
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeE-----EEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVP-----LYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~-----l~v~~a 167 (274)
.+..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|..|++.|+|..|.|+. |.|..+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 356799999999999999999999999999999999887 89999999999999999999999999988 555554
Q ss_pred c
Q psy3343 168 P 168 (274)
Q Consensus 168 ~ 168 (274)
.
T Consensus 92 ~ 92 (115)
T 3beg_B 92 G 92 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 147
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.3e-15 Score=122.22 Aligned_cols=77 Identities=29% Similarity=0.453 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44699999999999999999999999999999999763 479999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 644
No 148
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=115.54 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+.. ++..|.|+.|.|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3489999999999999999999999999999999874 47999999999999999987 9999999999999986
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
.+
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 149
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-16 Score=116.52 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=69.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCe----eEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDL----GRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.| ..+.+.. .+|||||+|.+.++|..|+..|+|..+.|++|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456999999999999999999999999998 5665554 468999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 102 a~~~ 105 (115)
T 2cpx_A 102 GKNK 105 (115)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9644
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=9.5e-16 Score=112.71 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=68.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|||+.+++++|+++|++||.|..+ ... .+|||||+|.+.++|..|+..|+|..+.|++|.|.|+..+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4456999999999999999999999999998777 222 4589999999999999999999999999999999998544
No 151
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.2e-15 Score=122.84 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=68.3
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEEecCC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEG 170 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~ 170 (274)
.+|||+|||+.+|+++|+++|++||.|.+|.|.. .++||||+|.+.++|..|++.|+|..|.| ++|.|+|+...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 6789999999999999999999999999999864 46899999999999999999999999966 99999999654
No 152
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=9.3e-16 Score=114.72 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=70.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+.. ++..|.|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 455699999999999999999999999999999999774 37999999999999999998 99999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8644
No 153
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=115.98 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=68.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCe-eEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++|+++|+++|+.||.| ..|.|+. .+|||||+|.+.++|.+|+.. ++..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4456899999999999999999999999999 7888875 468999999999999999986 99999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 85
No 154
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=110.96 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=68.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+. ++..+.|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 445689999999999999999999999999999999764 3799999999999999998 57899999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8644
No 155
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=112.27 Aligned_cols=77 Identities=10% Similarity=0.194 Sum_probs=68.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE-EEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR-VLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|.. |.|+. .+|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345699999999999999999999999999987 77765 358999999999999999996 99999999999998
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8543
No 156
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.9e-15 Score=115.36 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=70.8
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
....++|||+|| ++++++|+++|++||.|..|.+...+|||||+|.+.++|..|+..|+|..+.|++|.|.|+...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 445699999996 6999999999999999999999989999999999999999999999999999999999999644
No 157
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=2.7e-15 Score=114.91 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=68.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCC---eeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGD---LGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
....++|||+|||+++|+++|+++|+.||. |..|.|+.+ +|||||+|.+.++|.+|+. +++..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 445689999999999999999999999999 888888753 4799999999999999999 9999999999999
Q ss_pred EEec
Q psy3343 165 EWAP 168 (274)
Q Consensus 165 ~~a~ 168 (274)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9984
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=119.12 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=69.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE--------EEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR--------VLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVP 161 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~ 161 (274)
....++|||+|||+.+|+++|+.+|++||.|.. +.+.. .+|||||+|.+.++|..|+..|+|..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 446699999999999999999999999999865 43333 5689999999999999999999999999999
Q ss_pred EEEEEecCC
Q psy3343 162 LYLEWAPEG 170 (274)
Q Consensus 162 l~v~~a~~~ 170 (274)
|.|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999543
No 159
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=110.21 Aligned_cols=78 Identities=23% Similarity=0.255 Sum_probs=66.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
....++|||+|||+++++++|+++|+.|+.|.-+.-.. .++||||+|.+.++|.+|+..|++..|.|+.|.|.|+..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 45569999999999999999999999986443332222 248999999999999999999999999999999999964
Q ss_pred C
Q psy3343 170 G 170 (274)
Q Consensus 170 ~ 170 (274)
+
T Consensus 92 ~ 92 (102)
T 2fc8_A 92 K 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.59 E-value=6.4e-16 Score=121.26 Aligned_cols=78 Identities=28% Similarity=0.448 Sum_probs=71.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|++|.|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445689999999999999999999999999999999763 57999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9644
No 161
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=4.9e-16 Score=121.14 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=70.2
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE--EEeeCC------CeEEEEEecCHHHHHHHHHHhCCC----eeCC
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR--VLVPPY------GITGLVEFLQKNQAKAAFNSLAYT----KFKE 159 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~----~~~g 159 (274)
.....++|||+|||+++|+++|+++|++||.|.. |+|+.+ +|||||+|.+. +|.+|+..|+|. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456689999999999999999999999999966 888763 48999999999 999999999999 9999
Q ss_pred eEEEEEEecCC
Q psy3343 160 VPLYLEWAPEG 170 (274)
Q Consensus 160 ~~l~v~~a~~~ 170 (274)
++|.|.|+...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998543
No 162
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=110.54 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=67.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++|+++|+++|++||.+ .|.|+.+ +|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3456899999999999999999999999954 8888753 4799999999999999995 8999999999999988
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=7.2e-16 Score=108.08 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=64.0
Q ss_pred EEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 98 IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 98 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
+|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+. +++..+.|++|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999763 5899999999999999998 5899999999999875
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=3.3e-15 Score=117.28 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=68.6
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCC---eeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGD---LGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
....++|||+|||+++|+++|+++|++||. |..|.|+.+ +|||||+|.+.++|.+|++ |++..|.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 445689999999999999999999999999 888888753 4899999999999999999 9999999999999
Q ss_pred EEec
Q psy3343 165 EWAP 168 (274)
Q Consensus 165 ~~a~ 168 (274)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 165
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-15 Score=117.92 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEE-Eee--C---CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV-LVP--P---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~l~--~---~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+++|+++|+++|+.||.|..+ .+. . .+|||||+|.+.++|.+|+. |++..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999999763 332 1 25899999999999999999 9999999999999998
Q ss_pred cC
Q psy3343 168 PE 169 (274)
Q Consensus 168 ~~ 169 (274)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=8.6e-16 Score=114.08 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=67.0
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+++++++|+++|++||.|.. .++. .+|||||+|.+.++|.+|++ |+|..+.|+.|.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 445689999999999999999999999998766 2322 57899999999999999998 999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+..+
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8644
No 167
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.3e-15 Score=110.41 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=65.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
..+|||+|||+++|+++|+++|+.| .|..|.|+. .+|||||+|.+.++|.+|+ .+++..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4799999999999999999999999 899999976 3589999999999999999 599999999999998874
No 168
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=1.6e-15 Score=112.79 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=69.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+. ++..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 344589999999999999999999999999999999873 4899999999999999998 999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 644
No 169
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=3.2e-15 Score=127.83 Aligned_cols=79 Identities=18% Similarity=0.340 Sum_probs=72.5
Q ss_pred hcCCCcEEEEeCCCCCC---------CHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCee-----
Q psy3343 92 EARSKRIILVKNLPYRT---------LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKF----- 157 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~----- 157 (274)
.....++|||+|||..+ ++++|+.+|++||.|.+|.++.++|||||+|.+.++|..|++.|+|..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 35567999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred -------CCeEEEEEEecCC
Q psy3343 158 -------KEVPLYLEWAPEG 170 (274)
Q Consensus 158 -------~g~~l~v~~a~~~ 170 (274)
.|+.|.|.||...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 8999999999644
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=113.27 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=68.5
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCC---eeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGD---LGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 164 (274)
....++|||+|||+++|+++|+++|+.||. |..|.|+. .+|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345689999999999999999999999988 88998876 35899999999999999999 9999999999999
Q ss_pred EEec
Q psy3343 165 EWAP 168 (274)
Q Consensus 165 ~~a~ 168 (274)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9984
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-15 Score=107.43 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
..++|||+|||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|.. ....+.|++|.|.|+..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 469999999999999999999999999999999987 48999999999999975432 134458999999998644
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=1.1e-14 Score=122.56 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=98.0
Q ss_pred cccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHhh--------hhhh----hHHHHHHHHHH-HCCCCccc-
Q psy3343 26 TWNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRLA--------MGET----EIVEKTRAFLE-ENGVQLDA- 86 (274)
Q Consensus 26 ~wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~a--------l~e~----~~~~~~~~~l~-~~g~~~~~- 86 (274)
.-.+|||+... +.+++++|.+ |....|++. .|++ .-...+...+. .+|..+..
T Consensus 14 p~~tlfVgnLp--------~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 14 PMASLYVGDLH--------PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp -CCEEEEESCC--------TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCC--------CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 34579998874 7777777755 444444432 1222 22344444443 34433211
Q ss_pred -----cc---hhhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC----CCeEEEEEecCHHHHHHHHHHhCC
Q psy3343 87 -----FN---QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAY 154 (274)
Q Consensus 87 -----~~---~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~----~~~~afV~F~~~~~A~~A~~~l~~ 154 (274)
+. ........++|||+|||+.+|+++|+++|++||.|..|.|++ .+|||||+|.+.++|.+|++.|||
T Consensus 86 ~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 86 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 00 111233457999999999999999999999999999999976 358999999999999999999999
Q ss_pred CeeCCeEEEEEEecC
Q psy3343 155 TKFKEVPLYLEWAPE 169 (274)
Q Consensus 155 ~~~~g~~l~v~~a~~ 169 (274)
..|.|++|.|.|+..
T Consensus 166 ~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 166 MLLNDRKVFVGRFKS 180 (213)
T ss_dssp CEETTEECEEEECCC
T ss_pred CEECCEEEEEEEcCC
Confidence 999999999999853
No 173
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=8.1e-15 Score=120.22 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|++|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34689999999999999999999999999999999763 5899999999999999999999999999999999996
Q ss_pred CC
Q psy3343 169 EG 170 (274)
Q Consensus 169 ~~ 170 (274)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 44
No 174
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=6.4e-15 Score=125.72 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCC--CeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFG--DLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
..++|||+|||+++|+++|+++|++|| .|.+|.|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 458999999999999999999999999 9999999763 47999999999999999999999999999999999
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-16 Score=119.26 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeE--------EEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR--------VLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFK 158 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~ 158 (274)
....++|||+|||+.+++++|+++|++||.|.. |.++.+ +|||||+|.+.++|.+|+..|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999988 777653 579999999999999999999999999
Q ss_pred CeEEEEEEecCC
Q psy3343 159 EVPLYLEWAPEG 170 (274)
Q Consensus 159 g~~l~v~~a~~~ 170 (274)
|++|.|.|+..+
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999998644
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.5e-14 Score=116.76 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..|+|..+.|++|.|.||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4589999999999999999999999999999999764 489999999999999999999999999999999997
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=2.9e-14 Score=119.30 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=72.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
....++|||+|||+.+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..|+|..|.|++|.|.|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 345689999999999999999999999999999999864 58999999999999999999999999999999999
Q ss_pred ecCC
Q psy3343 167 APEG 170 (274)
Q Consensus 167 a~~~ 170 (274)
+...
T Consensus 202 a~~~ 205 (216)
T 2qfj_A 202 AVTP 205 (216)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 8644
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=7e-14 Score=104.86 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=67.8
Q ss_pred cCCCcEEEEeCCCC-----CCCHHHHHHccccCCCeeEEEeeC-------CCeEEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy3343 93 ARSKRIILVKNLPY-----RTLPTDLKALFEPFGDLGRVLVPP-------YGITGLVEFLQKNQAKAAFNSLAYTKFKEV 160 (274)
Q Consensus 93 ~~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~l~~-------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~ 160 (274)
..+.++|+|+||.. +-++++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999963 247899999999999999999874 258999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy3343 161 PLYLEWAPE 169 (274)
Q Consensus 161 ~l~v~~a~~ 169 (274)
+|.|.|++.
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999863
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=3.3e-14 Score=132.21 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+.+|+++|..+|++||.|..|.|+.+ +|||||+|.+.++|..||..|+|..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999763 589999999999999999999999999999999999
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 654
No 180
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=3.9e-14 Score=116.88 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45699999999999999999999999999999999864 589999999999999999999999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
..+
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=6e-14 Score=112.65 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=69.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKE--VPLYL 164 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v 164 (274)
....++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+..|+|..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 345689999999999999999999999999999998764 3799999999999999999999999988 99999
Q ss_pred EEe
Q psy3343 165 EWA 167 (274)
Q Consensus 165 ~~a 167 (274)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=112.59 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=66.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCe----eEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDL----GRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
.....+|||+|||+++|+++|+++|++||.| ..|.|+. .+|||||+|.+.++|.+|+.. ++..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3456899999999999999999999999975 5787765 248999999999999999985 99999999999
Q ss_pred EEEec
Q psy3343 164 LEWAP 168 (274)
Q Consensus 164 v~~a~ 168 (274)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98874
No 183
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=6.7e-15 Score=115.96 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=67.2
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....++|||+|||+++|+++|+++|++|| |..|.|+. .+|||||+|.+.++|.+|+ .+++..|.|+.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 77999876 3589999999999999999 78999999999999987
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=3.6e-14 Score=114.58 Aligned_cols=73 Identities=15% Similarity=0.340 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFK---EVPLYLEW 166 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~---g~~l~v~~ 166 (274)
..++|||+|||+.+|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|+|..+. +++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 4589999999999999999999999999999999874 579999999999999999999998776 49999999
Q ss_pred e
Q psy3343 167 A 167 (274)
Q Consensus 167 a 167 (274)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=5.9e-14 Score=122.62 Aligned_cols=75 Identities=28% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC-eEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEEec
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-ITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAP 168 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~-~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~ 168 (274)
...++|||+|||+.+++++|+++|++||.|.+|.+.+++ |||||+|.+.++|.+|+..|+|..|. |++|.|.|+.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 356899999999999999999999999999999999865 89999999999999999999999999 9999999984
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.5e-14 Score=107.28 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=62.9
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC---------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~---------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
....++|||+|||+++++++|+++|++||.|. +.++. .+|||||+|.+.++|.+|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 77754 25899999999999999999884 47888888
Q ss_pred EEEec
Q psy3343 164 LEWAP 168 (274)
Q Consensus 164 v~~a~ 168 (274)
+..++
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 77654
No 187
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=3.4e-14 Score=109.99 Aligned_cols=73 Identities=11% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCee--EEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEE
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 166 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 166 (274)
...++|||+|||+++|+++|+++|++| .|. .|.|+. .+|||||+|.+.++|.+|+. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456899999999999999999999999 566 898876 35899999999999999998 578999999999988
Q ss_pred ec
Q psy3343 167 AP 168 (274)
Q Consensus 167 a~ 168 (274)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=4e-14 Score=113.67 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++ ++|..+.|++|.|.|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 34679999999999999999999999999999999763 4899999999999999998 8999999999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=1e-13 Score=117.92 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCC-CeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEEecC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAPE 169 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~ 169 (274)
+.++|||+|||+.+++++|+++|++|| .|..|.+.+ ++|||||+|.+.++|.+|+..|+|..+. |++|.|.|+..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 358999999999999999999999999 999999944 7899999999999999999999999999 99999999864
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-13 Score=103.66 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=68.3
Q ss_pred hcCCCcEEEEeCCCCCCC-----------HHHHHHccccCCCeeEEEeeC--CCeEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3343 92 EARSKRIILVKNLPYRTL-----------PTDLKALFEPFGDLGRVLVPP--YGITGLVEFLQKNQAKAAFNSLAYTKFK 158 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~i~~v~l~~--~~~~afV~F~~~~~A~~A~~~l~~~~~~ 158 (274)
.....++|+|+||..... +++|+++|++||.|..|.|+. .+|||||+|.+.++|..|+..|+|..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345679999999954432 689999999999999998753 5799999999999999999999999999
Q ss_pred CeEEEEEEecCC
Q psy3343 159 EVPLYLEWAPEG 170 (274)
Q Consensus 159 g~~l~v~~a~~~ 170 (274)
|++|.|.|+...
T Consensus 91 gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 GRQITAQAWDGT 102 (112)
T ss_dssp TEECEEEECCSC
T ss_pred CcEEEEEEeCCC
Confidence 999999998543
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=9.3e-14 Score=112.59 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEee--CCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~--~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
...++|||+|||+.+++++|+++|++||.|..+ .. ..+|||||+|.+.++|.+|+..|+|..+.|++|.|.|+.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 345899999999999999999999999998877 22 15689999999999999999999999999999999998643
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=6.9e-14 Score=115.82 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCC-CeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEEecCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAPEG 170 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 170 (274)
+.++|||+|||+.+++++|+++|++|| .|..|.+.+ ++|||||+|.+.++|.+|+..|+|..+. |++|.|.|+...
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 368999999999999999999999999 999999955 7899999999999999999999999999 999999998643
No 193
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.4e-13 Score=113.31 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=96.4
Q ss_pred ccccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHhh--------hhhh----hHHHHHHHHHHHCCCCcccc
Q psy3343 25 HTWNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRLA--------MGET----EIVEKTRAFLEENGVQLDAF 87 (274)
Q Consensus 25 ~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~a--------l~e~----~~~~~~~~~l~~~g~~~~~~ 87 (274)
..-.+|||+... +.+++.+|.+ |....|++. .|++ .-.+++..++..++..+...
T Consensus 11 ~~~~~l~V~nLp--------~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 82 (196)
T 1l3k_A 11 EQLRKLFIGGLS--------FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 82 (196)
T ss_dssp GGGGEEEEESCC--------TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE
T ss_pred CCCCEEEEeCCC--------CCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE
Confidence 455678888763 6666666654 333333331 2232 23456666666665432210
Q ss_pred ------ch-------hhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHH
Q psy3343 88 ------NQ-------VVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAA 148 (274)
Q Consensus 88 ------~~-------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A 148 (274)
.. +......++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 00 111234589999999999999999999999999999999763 47999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEEecCC
Q psy3343 149 FNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 149 ~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
+.. ++..|.|+.|.|.|+..+
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHC-SCCEETTEECEEEECC--
T ss_pred HHh-CCcEECCEEEEEEecCCh
Confidence 985 899999999999999644
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1e-13 Score=115.25 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=66.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeC-----CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 169 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~-----~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 169 (274)
.++|||+|||+++++++|+++|++||.|..|+|++ .+|||||+|.+.++|..|+..+ +..+.|++|.|.|+..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 48999999999999999999999999999999986 3589999999999999999855 5699999999999753
No 195
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.47 E-value=1.3e-13 Score=110.41 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=68.1
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecCHHHHHHHHHHhCCCeeCCe--EEEE
Q psy3343 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEV--PLYL 164 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~~~~A~~A~~~l~~~~~~g~--~l~v 164 (274)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|+|..+.|+ +|.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999998763 48999999999999999999999999996 4888
Q ss_pred EEe
Q psy3343 165 EWA 167 (274)
Q Consensus 165 ~~a 167 (274)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 196
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.7e-13 Score=105.17 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=65.4
Q ss_pred CcEEEEeCC----CCCCCHHHHHHccccCCCeeEEEeeCC------CeEEEEEecC----HHH----HHHHHH--HhCCC
Q psy3343 96 KRIILVKNL----PYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQ----KNQ----AKAAFN--SLAYT 155 (274)
Q Consensus 96 ~~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~l~~~------~~~afV~F~~----~~~----A~~A~~--~l~~~ 155 (274)
++.|||+|| |+.+++.+|+.+|++||+|.+|.+..+ +|||||+|.+ +++ |.+|+. .|+|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 999999999999999999999988763 4899999996 433 889988 78999
Q ss_pred eeCCeEEEEEEecCC
Q psy3343 156 KFKEVPLYLEWAPEG 170 (274)
Q Consensus 156 ~~~g~~l~v~~a~~~ 170 (274)
.|.|++|.|.+-..+
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987655
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2.2e-13 Score=122.36 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=68.4
Q ss_pred cCCCcEEEEeC--CCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeC---Ce--EEEEE
Q psy3343 93 ARSKRIILVKN--LPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK---EV--PLYLE 165 (274)
Q Consensus 93 ~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~---g~--~l~v~ 165 (274)
..+..+|||+| |++.+|+++|+++|++||.|.+|.+++++|||||+|.+.++|++|++.|||..+. |+ +|+|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 34568999999 5889999999999999999999999999999999999999999999999999883 44 78998
Q ss_pred Eec
Q psy3343 166 WAP 168 (274)
Q Consensus 166 ~a~ 168 (274)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=6.6e-13 Score=99.50 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=66.3
Q ss_pred CCcEEEEeCC--CCCC--------CHHHHHHccccCCCeeEEEeeCC--------CeEEEEEecCHHHHHHHHHHhCCCe
Q psy3343 95 SKRIILVKNL--PYRT--------LPTDLKALFEPFGDLGRVLVPPY--------GITGLVEFLQKNQAKAAFNSLAYTK 156 (274)
Q Consensus 95 ~~~~l~V~nL--p~~~--------te~~l~~~F~~~G~i~~v~l~~~--------~~~afV~F~~~~~A~~A~~~l~~~~ 156 (274)
+.++|.++|+ |... .+++|++.|++||.|.+|.|+++ +|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5688999998 3333 24799999999999999999762 5899999999999999999999999
Q ss_pred eCCeEEEEEEecCC
Q psy3343 157 FKEVPLYLEWAPEG 170 (274)
Q Consensus 157 ~~g~~l~v~~a~~~ 170 (274)
|.||+|.|.|++..
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998643
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.41 E-value=3.4e-13 Score=113.00 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCe--eEEEeeCC----CeEEEEEecCHHHHHHHHHHhCCCeeCCe----EEEE
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPY----GITGLVEFLQKNQAKAAFNSLAYTKFKEV----PLYL 164 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i--~~v~l~~~----~~~afV~F~~~~~A~~A~~~l~~~~~~g~----~l~v 164 (274)
+.++|||+|||+.+|+++|+++|++||.| .++++.++ +|||||+|.+.++|.+|+..|||..|.|. |+.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 34689999999999999999999999999 89998764 38999999999999999999999999886 6777
Q ss_pred EEe
Q psy3343 165 EWA 167 (274)
Q Consensus 165 ~~a 167 (274)
.||
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 765
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=1.6e-13 Score=119.00 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=97.5
Q ss_pred ccccccccChhHHHHHHHHHhCCCcccccC-----CchhHHHh--hhhhh----hHHHHHHHHHH-HCCCCccccc-hhh
Q psy3343 25 HTWNSLFLGTNAIAEAMAETYNATKAEVLT-----GSGAATRL--AMGET----EIVEKTRAFLE-ENGVQLDAFN-QVV 91 (274)
Q Consensus 25 ~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~-----~~~~avr~--al~e~----~~~~~~~~~l~-~~g~~~~~~~-~~~ 91 (274)
..=++|||+... +.++..+|.+ |....|++ ..|++ .-...+..++. .+|..+.... ...
T Consensus 20 ~~~~~l~V~nLp--------~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 20 TQRCRLFVGNLP--------TDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp CGGGEEEEESCC--------TTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEECCC--------CCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 344578988874 6777777755 44434433 12333 22445555554 5665433211 011
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhC-CCeeC---CeEE
Q psy3343 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLA-YTKFK---EVPL 162 (274)
Q Consensus 92 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~-~~~~~---g~~l 162 (274)
...+.++|||+|||+.+|+++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+ +..+. +++|
T Consensus 92 ~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 92 FATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp ECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred ecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 2345689999999999999999999999999999998763 5899999999999999999995 45554 8999
Q ss_pred EEEEecC
Q psy3343 163 YLEWAPE 169 (274)
Q Consensus 163 ~v~~a~~ 169 (274)
.|.++..
T Consensus 172 ~v~~~~~ 178 (261)
T 3sde_A 172 IVEPMEQ 178 (261)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9999853
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=9.3e-14 Score=103.99 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=60.3
Q ss_pred EeCCCCCCCHHHHHHcc------------ccCCCeeEEEeeCC-----CeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 101 VKNLPYRTLPTDLKALF------------EPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 101 V~nLp~~~te~~l~~~F------------~~~G~i~~v~l~~~-----~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
+.|||+.+++++|++.| ++||.|.+|.++++ +|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777888777766 99999999999873 68999999999999999999999999999999
Q ss_pred EEEec
Q psy3343 164 LEWAP 168 (274)
Q Consensus 164 v~~a~ 168 (274)
|.|+|
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99975
No 202
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.36 E-value=1.7e-12 Score=103.91 Aligned_cols=101 Identities=20% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCC
Q psy3343 131 YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVP 210 (274)
Q Consensus 131 ~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (274)
.+|||||+|.+.++|++|+..+++....+..+.+...... ... ... ....
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~------~~~-~~~-~~~~---------------------- 61 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKT------FTV-TEG-SHHH---------------------- 61 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTE------EEE-ECC-CCCS----------------------
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccc------ccc-ccc-cccc----------------------
Confidence 4699999999999999999988864433333232211100 000 000 0000
Q ss_pred cccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCCC
Q psy3343 211 EVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~-~~~~~g 269 (274)
.........++|||+|||+++|+++|+++|++||.|.+|+|++++ .+++.|
T Consensus 62 --------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g 113 (158)
T 2kn4_A 62 --------HHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRG 113 (158)
T ss_dssp --------SCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCC
T ss_pred --------ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccce
Confidence 001123456899999999999999999999999999999999986 444444
No 203
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.35 E-value=7.4e-13 Score=105.27 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=71.9
Q ss_pred CeEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCC
Q psy3343 132 GITGLVEFLQKNQAKAAFNSL-AYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVP 210 (274)
Q Consensus 132 ~~~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (274)
+|+++|+|.+.++|++|++.+ +|..+.| ++.+.++.... ...... . ..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~----~~~~~~-~---~~---------------------- 61 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF----TVTEGS-H---HH---------------------- 61 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE----EEECSS-S---SC----------------------
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc----cccccc-c---cc----------------------
Confidence 589999999999999999999 9999999 99999874320 000000 0 00
Q ss_pred cccccccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 211 EVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..........+.++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 62 -----~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 62 -----HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp -----CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred -----cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 00000123346789999999999999999999999999999999987
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=3.3e-12 Score=97.63 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCcEEEEeCCCC--C---CCHHHHHHccccCCCeeEEEeeCC----------CeEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3343 95 SKRIILVKNLPY--R---TLPTDLKALFEPFGDLGRVLVPPY----------GITGLVEFLQKNQAKAAFNSLAYTKFKE 159 (274)
Q Consensus 95 ~~~~l~V~nLp~--~---~te~~l~~~F~~~G~i~~v~l~~~----------~~~afV~F~~~~~A~~A~~~l~~~~~~g 159 (274)
++++|+++|+-. + -.++||++.|++||.|.+|.|+++ +|++||+|.+.++|.+|+..|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999942 1 247899999999999999998762 2799999999999999999999999999
Q ss_pred eEEEEEEecCC
Q psy3343 160 VPLYLEWAPEG 170 (274)
Q Consensus 160 ~~l~v~~a~~~ 170 (274)
|+|.|.|++..
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998643
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=3.9e-12 Score=96.67 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCC----------CHHHHHHccccCCCeeEEEeeCC--CeEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy3343 95 SKRIILVKNLPYRT----------LPTDLKALFEPFGDLGRVLVPPY--GITGLVEFLQKNQAKAAFNSLAYTKFKEVPL 162 (274)
Q Consensus 95 ~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~l~~~--~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l 162 (274)
..++|.++|+=... .+++|++.|++||.|.+|.++++ +|+|||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45788899984322 24588999999999999999874 6999999999999999999999999999999
Q ss_pred EEEEecCCCCccccc
Q psy3343 163 YLEWAPEGVFAEAKE 177 (274)
Q Consensus 163 ~v~~a~~~~f~~~~~ 177 (274)
.|.|++...|....+
T Consensus 86 ~v~~~~~~~y~~~fp 100 (114)
T 3s6e_A 86 TAAYVPLPTYHNLFP 100 (114)
T ss_dssp EEEEECHHHHHHHCG
T ss_pred EEEEEcHHHHHHhCc
Confidence 999997665544433
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.8e-12 Score=92.72 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=61.3
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHccccCCCeeEEEeeC-CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 96 KRIILVKNLP-------YRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 96 ~~~l~V~nLp-------~~~te~~l~~~F~~~G~i~~v~l~~-~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
..+|.|.-.+ ..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|..|++.++ .+.|++|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 3566665443 4589999999999999999999974 67999999999999999999754 468999999998
Q ss_pred cCC
Q psy3343 168 PEG 170 (274)
Q Consensus 168 ~~~ 170 (274)
...
T Consensus 88 ~~~ 90 (100)
T 2d9o_A 88 EGQ 90 (100)
T ss_dssp SCC
T ss_pred cCC
Confidence 644
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.4e-10 Score=88.57 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=68.1
Q ss_pred cCCCcEEEEeCCCCC-CCHHHHHHccccCCCeeEEEeeCCCeEEEEEecC-HHHHHHHHHHhC--CCeeCCeEEEEEEe
Q psy3343 93 ARSKRIILVKNLPYR-TLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ-KNQAKAAFNSLA--YTKFKEVPLYLEWA 167 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~-~~~A~~A~~~l~--~~~~~g~~l~v~~a 167 (274)
-..++.|||+||++. +++++|+++|++||.|..|.+.++...|||+|.+ +.+|..|+..|+ +..|.|..+.++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 456799999999999 9999999999999999999999988899999999 799999999995 67889988887754
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-09 Score=78.22 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=63.0
Q ss_pred CCCcEEEEeCCCC----CCCH----HHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy3343 94 RSKRIILVKNLPY----RTLP----TDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 165 (274)
Q Consensus 94 ~~~~~l~V~nLp~----~~te----~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 165 (274)
++..+|+|.-.|. +.-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |+|..+.|+.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4567888887762 3333 6799999999999999998876 8999999999999998 99999999999999
Q ss_pred EecCC
Q psy3343 166 WAPEG 170 (274)
Q Consensus 166 ~a~~~ 170 (274)
++.+.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98644
No 209
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.99 E-value=4.4e-10 Score=82.97 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=38.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..++++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 56 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV 56 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC
Confidence 45678999999999999999999999999999999999875
No 210
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.4e-09 Score=80.94 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=40.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
...++|||+|||+++|+++|+++|++||.|.+|+|++++++++.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG 53 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG 53 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCcc
Confidence 345799999999999999999999999999999999998866665
No 211
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.86 E-value=4.3e-09 Score=77.72 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
...++++|||+|||+++|+++|+++|++||.|.+|++++.+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k 57 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 57 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC
Confidence 44578899999999999999999999999999999998643
No 212
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.5e-09 Score=78.92 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~ 51 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 51 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 3456789999999999999999999999999999999976
No 213
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.85 E-value=7.6e-10 Score=86.37 Aligned_cols=39 Identities=31% Similarity=0.583 Sum_probs=36.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+.++|||+|||+.+|+++|+++|++||.|..|+|++++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 457999999999999999999999999999999998864
No 214
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.83 E-value=3.6e-09 Score=79.55 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=37.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~ 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR 43 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC
Confidence 4678999999999999999999999999999999999986
No 215
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.80 E-value=5.7e-09 Score=74.58 Aligned_cols=41 Identities=15% Similarity=0.450 Sum_probs=37.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 48 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 48 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC
Confidence 34678999999999999999999999999999999999875
No 216
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=78.24 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=37.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEecCCC-CCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCG-PIASVTVARKKD-PKSPG 269 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG-~I~~v~v~~~~~-~~~~g 269 (274)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++. +++.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg 45 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRG 45 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCc
Confidence 36899999999999999999999999 899999999875 34443
No 217
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.79 E-value=5.4e-09 Score=79.06 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=36.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
..++|||+|||+++|+++|+++|++||.|.+|+|++++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~ 43 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 43 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC
Confidence 3568999999999999999999999999999999998753
No 218
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=6.5e-09 Score=75.12 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=62.3
Q ss_pred cCCCcEEEEeCCCCC-----CCH----HHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy3343 93 ARSKRIILVKNLPYR-----TLP----TDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 163 (274)
Q Consensus 93 ~~~~~~l~V~nLp~~-----~te----~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 163 (274)
.++..+|+|.-++.. .-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |+|..+.||.|.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 456689999888743 222 5688999999999999998876 9999999999999998 999999999999
Q ss_pred EEEec
Q psy3343 164 LEWAP 168 (274)
Q Consensus 164 v~~a~ 168 (274)
|.+..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98753
No 219
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.76 E-value=9.4e-09 Score=76.12 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=39.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|+++++++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 56 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 56 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 45789999999999999999999999999999999999865443
No 220
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.76 E-value=8.1e-09 Score=74.95 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=39.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
.+.++|||+|||+.+++++|+++|++||.|.+|+|+++++++..
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 57 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPK 57 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCc
Confidence 45689999999999999999999999999999999999875443
No 221
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.75 E-value=8.9e-09 Score=74.31 Aligned_cols=39 Identities=10% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 346789999999999999999999999999999999985
No 222
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=7.8e-09 Score=76.71 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=36.7
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 224 PEPDTTLYIKNLNF-NSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 224 ~~~~~~lfV~NL~~-~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..++++|||+|||+ ++|+++|+++|++||.|.+|+|++++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k 52 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI 52 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence 34678999999999 99999999999999999999998764
No 223
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.73 E-value=5.2e-09 Score=76.63 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=36.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCC--eeEEEEecCCC-CCCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGP--IASVTVARKKD-PKSPG 269 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~--I~~v~v~~~~~-~~~~g 269 (274)
.+|||+|||+.+|+++|+++|++||. |.+|+|++|+. +++.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG 54 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRG 54 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCce
Confidence 59999999999999999999999995 67999999875 34443
No 224
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.73 E-value=1.4e-08 Score=76.00 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=37.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC-CCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD-PKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~-~~~~g 269 (274)
..++++|||+|||+++|+++|+++|++||.|.+|+|+++++ ++..|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg 68 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 68 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCc
Confidence 34568999999999999999999999999999999999875 44443
No 225
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=1.6e-08 Score=85.10 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=56.8
Q ss_pred CCHHHHHHccccCCCeeEEEeeC----------CCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Q psy3343 108 TLPTDLKALFEPFGDLGRVLVPP----------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 170 (274)
Q Consensus 108 ~te~~l~~~F~~~G~i~~v~l~~----------~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 170 (274)
-.+++|++.|++||.|.++.+++ .+|++||+|.+.++|.+|+..|+|..+.||+|.+.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 45789999999999999999973 3489999999999999999999999999999999998643
No 226
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.5e-08 Score=77.20 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
...++++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 66 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 3456789999999999999999999999999999999976
No 227
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=1.8e-08 Score=73.76 Aligned_cols=45 Identities=22% Similarity=0.548 Sum_probs=39.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK-DPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~-~~~~~g 269 (274)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|++++ .++..|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 51 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKG 51 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCe
Confidence 457899999999999999999999999999999999987 444443
No 228
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.4e-08 Score=74.57 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=40.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+.+++++..
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 58 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPK 58 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEE
Confidence 345689999999999999999999999999999999998865543
No 229
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.7e-08 Score=72.10 Aligned_cols=40 Identities=33% Similarity=0.598 Sum_probs=37.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.++++|||+|||+.+|+++|+++|++||.|..|+|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD 42 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC
Confidence 3568999999999999999999999999999999999875
No 230
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2e-08 Score=74.30 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..++++|||+|||+.+|+++|+++|++||.|.+|.|+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG 50 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 346789999999999999999999999999999999875
No 231
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.70 E-value=1.4e-08 Score=81.64 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=37.6
Q ss_pred EEecCHHHHHHHHHHhCCCeeC--CeEEEEEEecCCCCcccccccccccccccccccchhhhhccchhhcccCCCCcccc
Q psy3343 137 VEFLQKNQAKAAFNSLAYTKFK--EVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEE 214 (274)
Q Consensus 137 V~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (274)
.+|.+.++|..|+..|++.... |+.+...+.... ............ ..
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~------~~~~~~~~~~s~--------------~~---------- 60 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTRE------AIHSYERVRNED--------------DD---------- 60 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccc------cccCccccccCC--------------CC----------
Confidence 7899999999999999886655 555555543211 000000000000 00
Q ss_pred cccccccCCCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 215 NVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 215 ~~~~~~~~~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...-......++++|||+|||+.+|+++|+++|++||.|.+|.|++++.
T Consensus 61 -~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~ 109 (165)
T 1rk8_A 61 -ELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR 109 (165)
T ss_dssp ------CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred -CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC
Confidence 0000012334568999999999999999999999999999999998864
No 232
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=1.7e-08 Score=74.91 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=40.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE-EEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS-VTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~-v~v~~~~~~~~~g 269 (274)
...++|||+|||+.+|+++|+++|++||.|.. |+|+.+..++..|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G 58 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTG 58 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcce
Confidence 45689999999999999999999999999997 9999887776665
No 233
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.70 E-value=1.8e-08 Score=74.85 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=40.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
...++++|||+|||+.+|+++|+++|++||.|.+|+|++++.++..
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 70 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSL 70 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcc
Confidence 3456789999999999999999999999999999999999865543
No 234
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.70 E-value=3.3e-08 Score=73.56 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence 3456789999999999999999999999999999999875
No 235
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.9e-08 Score=71.83 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=38.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+.+++++|+++|++||.|.+|+|++++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 53 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD 53 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 345678999999999999999999999999999999999876
No 236
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.70 E-value=1.2e-08 Score=71.01 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=35.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
++|||+|||+++|+++|+++|++||.|.+|++++++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 37 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL 37 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4799999999999999999999999999999999875
No 237
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.4e-08 Score=70.96 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=37.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.++++|||+|||+.+++++|+++|++||.|.+|+|++++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 42 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT 42 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 3578999999999999999999999999999999999864
No 238
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.7e-08 Score=74.57 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=39.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhh-cCCeeEEEEecCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKK-CGPIASVTVARKKDPKS 267 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~-fG~I~~v~v~~~~~~~~ 267 (274)
..+.++|||+|||+++|+++|+++|++ ||.|.+|+|++++.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~ 50 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS 50 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCc
Confidence 346789999999999999999999999 99999999999875543
No 239
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=3.1e-08 Score=72.50 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=37.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|..|+|++++.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 47 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE 47 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 34568999999999999999999999999999999999865
No 240
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=77.83 Aligned_cols=46 Identities=30% Similarity=0.388 Sum_probs=39.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE--EEEecCC-CCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS--VTVARKK-DPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~--v~v~~~~-~~~~~g 269 (274)
..+.++|||+|||+.+|+++|+++|++||.|.. |+|++++ .+++.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG 68 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRG 68 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcce
Confidence 345689999999999999999999999999977 9999998 455444
No 241
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.69 E-value=2.8e-08 Score=75.30 Aligned_cols=45 Identities=31% Similarity=0.543 Sum_probs=40.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
.+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.++..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 49 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRG 49 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCccc
Confidence 356899999999999999999999999999999999998666554
No 242
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.69 E-value=1.9e-08 Score=74.56 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=37.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 50 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Confidence 34578999999999999999999999999999999999875
No 243
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.69 E-value=2.8e-09 Score=98.92 Aligned_cols=40 Identities=30% Similarity=0.635 Sum_probs=37.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.+.++|||+|||+.||+++|+++|++||.|..|.|+.++.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~ 139 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR 139 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC
Confidence 4568999999999999999999999999999999998863
No 244
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.8e-08 Score=76.03 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=41.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCe-eEEEEecCCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPI-ASVTVARKKDPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I-~~v~v~~~~~~~~~g 269 (274)
..+.++|||+|||+++|+++|+++|++||.| .+|+|+++++++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G 58 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLG 58 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSS
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcce
Confidence 3456899999999999999999999999999 899999998776665
No 245
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=75.59 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=40.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++++++..
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~ 56 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR 56 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCee
Confidence 345789999999999999999999999999999999999875443
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=4.4e-08 Score=72.19 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=38.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 53 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG 53 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 446789999999999999999999999999999999998764
No 247
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.68 E-value=1e-08 Score=75.51 Aligned_cols=43 Identities=19% Similarity=0.398 Sum_probs=38.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~ 268 (274)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 50 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSK 50 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCcc
Confidence 4579999999999999999999999999999999998855443
No 248
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=2.5e-08 Score=74.47 Aligned_cols=42 Identities=26% Similarity=0.509 Sum_probs=38.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD 52 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 345678999999999999999999999999999999999875
No 249
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.3e-08 Score=73.79 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK 52 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 34568999999999999999999999999999999999875
No 250
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.9e-08 Score=73.42 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=39.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC-CCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK-DPKSP 268 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~-~~~~~ 268 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|++++ .++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 57 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQ 57 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCC
Confidence 34467899999999999999999999999999999999987 34433
No 251
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.68 E-value=2.4e-08 Score=72.70 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=36.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
++++|||+|||+.+++++|+++|++||.|.+|+|++++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 39 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ 39 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 467999999999999999999999999999999999865
No 252
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=3e-08 Score=73.14 Aligned_cols=42 Identities=31% Similarity=0.564 Sum_probs=38.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+.+|+++|+++|++||.|..|.|++++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 50 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH 50 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 344678999999999999999999999999999999999876
No 253
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.2e-08 Score=75.55 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=38.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
....++|||+|||+++|+++|+++|++||. .+|+|++++++++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G 56 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTG 56 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEee
Confidence 345689999999999999999999999994 599999998766544
No 254
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.67 E-value=2.1e-08 Score=71.13 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=36.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 44 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 44 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC
Confidence 4568999999999999999999999999999999998843
No 255
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=3e-08 Score=73.56 Aligned_cols=40 Identities=20% Similarity=0.512 Sum_probs=36.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM 51 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC
Confidence 4467899999999999999999999999999999999883
No 256
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.66 E-value=7.1e-09 Score=76.42 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhhhcCCeeEEEEecCCC-CCCCC
Q psy3343 226 PDTTLYIKNLNF------NSTEDSIRRHFKKCGPIASVTVARKKD-PKSPG 269 (274)
Q Consensus 226 ~~~~lfV~NL~~------~~tee~L~~~F~~fG~I~~v~v~~~~~-~~~~g 269 (274)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++. +++.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG 55 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKG 55 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccce
Confidence 357999999999 999999999999999999999999987 44444
No 257
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=4.2e-08 Score=73.97 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=38.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 54 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ 54 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC
Confidence 344678999999999999999999999999999999999865
No 258
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.1e-07 Score=70.20 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccC-----CCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPF-----GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
+.++|-+-|||..++...|+.+..+| |.|..|.+.++.+-|+|+|.+...|-+|.-.|+|..|.|+.|.|.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 46899999999999999999999999 99999999999888999999999999999899999999999999854
No 259
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=5e-08 Score=71.89 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=38.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 53 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS 53 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC
Confidence 345789999999999999999999999999999999998664
No 260
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=3.8e-08 Score=73.95 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=39.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~ 267 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.++.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~ 65 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 65 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 34568999999999999999999999999999999999875544
No 261
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=2.6e-08 Score=73.48 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~ 266 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ .++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~ 53 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGR 53 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCC
Confidence 3446789999999999999999999999999999999988 443
No 262
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.65 E-value=4.3e-08 Score=70.10 Aligned_cols=38 Identities=26% Similarity=0.653 Sum_probs=35.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 43 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF 43 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC
Confidence 47999999999999999999999999999999999863
No 263
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.64 E-value=2.6e-08 Score=70.29 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=35.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 38 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ 38 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC
Confidence 36899999999999999999999999999999998864
No 264
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.64 E-value=2.9e-08 Score=70.69 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=36.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+.++|||+|||.++|+++|+++|++||.|.+|+|++++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 43 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA 43 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 467999999999999999999999999999999999863
No 265
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.63 E-value=1.7e-08 Score=78.79 Aligned_cols=46 Identities=11% Similarity=0.311 Sum_probs=41.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCC---eeEEEEecCCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGP---IASVTVARKKDPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~---I~~v~v~~~~~~~~~g 269 (274)
....++|||+|||+++|+++|+++|++||. |.+|+|++++++++.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG 89 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSG 89 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCe
Confidence 345689999999999999999999999999 8999999998876654
No 266
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=2.8e-08 Score=72.17 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEE-EEecCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV-TVARKK 263 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v-~v~~~~ 263 (274)
.++++|||+|||+.+|+++|+++|++||.|..| +|++++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~ 42 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP 42 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC
Confidence 357899999999999999999999999999999 999884
No 267
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=3.2e-08 Score=72.37 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=37.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCee-EEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIA-SVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~-~v~v~~~~~ 264 (274)
.+.++|||+|||+++|+++|+++|++||.|. +|+|++++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~ 47 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL 47 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC
Confidence 4578999999999999999999999999999 999999874
No 268
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.63 E-value=2.9e-08 Score=74.80 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 62 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ 62 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 34568999999999999999999999999999999999874
No 269
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.63 E-value=4.8e-08 Score=74.59 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=41.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
...++++|||+|||+.+++++|+++|++||.|.+|+|++++.++..|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g 77 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG 77 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEee
Confidence 34567899999999999999999999999999999999998666554
No 270
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=4.3e-08 Score=73.68 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=38.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC-CCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD-PKSPG 269 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~-~~~~g 269 (274)
..++|||+|||+.+|+++|+++|++||.|..|+|++++. ++..|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 68 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG 68 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCc
Confidence 357999999999999999999999999999999999876 34433
No 271
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.5e-08 Score=70.63 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=35.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
+.++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 4689999999999999999999999999999999876
No 272
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.62 E-value=1.7e-08 Score=75.29 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=41.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCC---eeEEEEecCCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGP---IASVTVARKKDPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~---I~~v~v~~~~~~~~~g 269 (274)
....++|||+|||+++|+++|+++|++||. |.+|+|++++++++.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G 56 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRG 56 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEee
Confidence 345689999999999999999999999988 9999999998877766
No 273
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.62 E-value=2.2e-08 Score=69.41 Aligned_cols=40 Identities=15% Similarity=0.407 Sum_probs=35.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC-CCCC
Q psy3343 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD-PKSP 268 (274)
Q Consensus 229 ~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~-~~~~ 268 (274)
+|||+|||+++|+++|+++|++||.|.+|++++++. +++.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 41 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHR 41 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcC
Confidence 589999999999999999999999999999999874 4433
No 274
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=4.7e-08 Score=72.26 Aligned_cols=39 Identities=31% Similarity=0.593 Sum_probs=36.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.+.++|||+|||+.+|+++|+++|++|| |.+|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~ 51 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS 51 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC
Confidence 4568999999999999999999999999 99999999876
No 275
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=4e-08 Score=72.75 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=37.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..++++|||+|||+.+|+++|+++|++||.|.+|.|++++.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 60 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR 60 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Confidence 34568999999999999999999999999999999999876
No 276
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.61 E-value=4.9e-08 Score=75.18 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=39.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCee--EEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIA--SVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~--~v~v~~~~~~~~~g 269 (274)
...++|||+|||+++|+++|+++|++| .|. +|+|+++++|++.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrG 85 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITG 85 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCce
Confidence 356799999999999999999999999 687 99999999887766
No 277
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=6.4e-08 Score=70.57 Aligned_cols=41 Identities=15% Similarity=0.387 Sum_probs=38.0
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIR----RHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~----~~F~~fG~I~~v~v~~~~~~ 265 (274)
..+++|||+|||+.+++++|+ ++|++||.|.+|+|++++++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~ 51 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY 51 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC
Confidence 356799999999999999999 99999999999999998876
No 278
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=1.9e-08 Score=76.45 Aligned_cols=45 Identities=11% Similarity=0.355 Sum_probs=40.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCC---eeEEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGP---IASVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~---I~~v~v~~~~~~~~~g 269 (274)
...++|||+|||+++|+++|+++|++||. |.+|+|+++++++..|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G 62 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSG 62 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCe
Confidence 35689999999999999999999999999 8999999998876544
No 279
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=69.54 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=35.2
Q ss_pred CceEEEeCCCCCC------CHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 227 DTTLYIKNLNFNS------TEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 227 ~~~lfV~NL~~~~------tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
+++|||+|||+.+ |+++|+++|++||.|.+|+|++ ..+++.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~~~g 48 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKTKG 48 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-BTTBCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-CCCcEeE
Confidence 3689999999999 7799999999999999999883 3444444
No 280
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.60 E-value=2.3e-08 Score=69.23 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=34.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 229 ~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+|||+|||+++|+++|+++|++||.|.+|.+++++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 36 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 36 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 599999999999999999999999999999998865
No 281
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.60 E-value=6.3e-08 Score=73.18 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 77 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ 77 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 344678999999999999999999999999999999998864
No 282
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.60 E-value=5.2e-08 Score=73.28 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=38.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 52 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 344678999999999999999999999999999999999863
No 283
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.60 E-value=4.8e-08 Score=70.37 Aligned_cols=38 Identities=18% Similarity=0.494 Sum_probs=35.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME 43 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence 45689999999999999999999999999999999984
No 284
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.60 E-value=2.5e-08 Score=78.11 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
...++|||+|||+++|+++|+++|++|| |.+|+|++++++++.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srG 87 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTG 87 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCce
Confidence 3467999999999999999999999999 7799999998877766
No 285
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=5.2e-08 Score=71.07 Aligned_cols=40 Identities=43% Similarity=0.755 Sum_probs=37.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+++++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 3568999999999999999999999999999999998876
No 286
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=2.4e-08 Score=76.62 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCe----eEEEEecCCCCCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPI----ASVTVARKKDPKSPG 269 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I----~~v~v~~~~~~~~~g 269 (274)
..++|||+|||+++|+++|+++|++||.| ..|+|++++++++.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G 69 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTG 69 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEee
Confidence 46799999999999999999999999986 699999988776554
No 287
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=7.1e-08 Score=69.82 Aligned_cols=43 Identities=33% Similarity=0.620 Sum_probs=38.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|.|++++..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 53 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 53 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC
Confidence 3456789999999999999999999999999999999998763
No 288
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=4.7e-08 Score=73.33 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
.++|||+|||+++|+++|+++|++| .|.+|+|++++++++.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G 57 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNG 57 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCe
Confidence 4699999999999999999999999 89999999998887766
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=6.8e-08 Score=72.80 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~-~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence 456789999999998 999999999999999999999864
No 290
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=3.9e-08 Score=72.52 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=37.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 52 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT 52 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC
Confidence 44678999999999999999999999999999999999864
No 291
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=6.4e-08 Score=72.34 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=38.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
....++|||+|||.++|+++|+++|++||.|.+|+|++++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 67 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG 67 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC
Confidence 446789999999999999999999999999999999988653
No 292
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.57 E-value=1e-07 Score=71.70 Aligned_cols=42 Identities=33% Similarity=0.633 Sum_probs=37.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
+.++++|||+|||+.+|+++|+++|++||.|.+|.|+++..+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~ 46 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET 46 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC
Confidence 345789999999999999999999999999999999976543
No 293
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.57 E-value=2.5e-08 Score=71.80 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=33.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEecCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCG--PIASVTVARKKD 264 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG--~I~~v~v~~~~~ 264 (274)
.+|||+|||+++|+++|+++|++|| .|.+|+|++++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~ 40 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA 40 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC
Confidence 4799999999999999999999999 999999999864
No 294
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=8.1e-08 Score=71.02 Aligned_cols=41 Identities=17% Similarity=0.502 Sum_probs=37.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 53 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 53 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC
Confidence 44678999999999999999999999999999999999864
No 295
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.56 E-value=8.2e-08 Score=73.39 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=38.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...++++|||+|||+.+|+++|+++|++||.|.+|.|+.++.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 59 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR 59 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 344578999999999999999999999999999999998863
No 296
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=6.2e-08 Score=71.19 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=37.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 49 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 49 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC
Confidence 34678999999999999999999999999999999998854
No 297
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=1.2e-07 Score=70.71 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=35.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
...++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 35689999999999999999999999999999999876
No 298
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.56 E-value=8.6e-08 Score=71.49 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=37.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..++++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 63 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR 63 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 34568999999999999999999999999999999998864
No 299
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=1e-07 Score=70.04 Aligned_cols=41 Identities=27% Similarity=0.614 Sum_probs=37.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 49 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE 49 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 34568999999999999999999999999999999998864
No 300
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=8.1e-08 Score=72.38 Aligned_cols=39 Identities=28% Similarity=0.532 Sum_probs=36.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+.++|||+|||+.+|+++|+++|++||.|..|+|++++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 64 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA 64 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC
Confidence 357999999999999999999999999999999999865
No 301
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.55 E-value=7.2e-08 Score=68.67 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=36.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..++|||+|||+++|+++|+++|++||.|.+|.|+++++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 41 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM 41 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence 467999999999999999999999999999999998875
No 302
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.55 E-value=7.7e-08 Score=70.41 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=38.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE--------EEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS--------VTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~--------v~v~~~~~ 264 (274)
...+.++|||+|||+++|+++|+++|++||.|.+ |+|++++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 58 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE 58 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC
Confidence 3456789999999999999999999999999999 99999865
No 303
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1e-07 Score=67.48 Aligned_cols=39 Identities=36% Similarity=0.555 Sum_probs=35.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR 47 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence 345689999999999999999999999999999999975
No 304
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.55 E-value=9.3e-08 Score=73.81 Aligned_cols=42 Identities=33% Similarity=0.631 Sum_probs=38.6
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~ 83 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ 83 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 445678999999999999999999999999999999999865
No 305
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=9.2e-08 Score=69.00 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=35.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 446789999999999999999999999999999999753
No 306
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=9.3e-08 Score=68.69 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=35.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 346789999999999999999999999999999999853
No 307
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.53 E-value=3.9e-08 Score=72.29 Aligned_cols=45 Identities=29% Similarity=0.546 Sum_probs=36.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC--CCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK--DPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~--~~~~~g 269 (274)
....++|||+|||+++|+++|+++|++|| |.+|+|++++ .++..|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g 62 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKG 62 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCe
Confidence 34568999999999999999999999999 9999999987 454444
No 308
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.7e-07 Score=69.76 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=36.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~ 59 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG 59 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 44678999999999999999999999999999999976543
No 309
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.52 E-value=1e-07 Score=70.65 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=36.9
Q ss_pred CCCceEEEeCCCCCC------CHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNS------TEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~------tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
..+++|||+|||+.+ |+++|+++|++||.|.+|+|+ +..|++.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G 62 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKG 62 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeee
Confidence 346899999999999 789999999999999999998 34444444
No 310
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=9.3e-08 Score=68.77 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=39.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
...++|||+|||+++|+++|+++|++| .|.+|+|+++.+++..|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g 51 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTG 51 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCce
Confidence 456899999999999999999999999 99999999997665443
No 311
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.52 E-value=3.2e-08 Score=71.02 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=35.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
++|||+|||+++++++|+++|++||.|.+|+|++++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 38 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE 38 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC
Confidence 5899999999999999999999999999999998875
No 312
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=1.1e-07 Score=70.19 Aligned_cols=40 Identities=43% Similarity=0.630 Sum_probs=36.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++|| |.+|+|+++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~ 51 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD 51 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC
Confidence 34568999999999999999999999997 99999999875
No 313
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=70.10 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=37.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 44568999999999999999999999999999999998865
No 314
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=2e-07 Score=67.92 Aligned_cols=39 Identities=23% Similarity=0.500 Sum_probs=35.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|.++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 446789999999999999999999999999999999865
No 315
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.3e-07 Score=70.90 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=36.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCee--------EEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIA--------SVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~--------~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|. .|+|++++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 60 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE 60 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC
Confidence 34678999999999999999999999999999 599998854
No 316
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.3e-07 Score=71.23 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=35.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
..++|||+|||+++|+++|+++|++||.|. +.++.++..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~ 45 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAES 45 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCC
Confidence 468999999999999999999999999999 888887764
No 317
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=2e-07 Score=68.16 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..+.++|||+|||+.+|+++|+++|++||.|..|+++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD 50 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC
Confidence 446789999999999999999999999999999999865
No 318
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.48 E-value=2.3e-07 Score=72.00 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=37.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+++|++++.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 100 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE 100 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC
Confidence 34678999999999999999999999999999999998854
No 319
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=68.56 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEE-EecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVT-VARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~-v~~~~~ 264 (274)
...++|||+|||+.+|+++|+++|++||.|.+|+ |++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~ 53 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE 53 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC
Confidence 3468999999999999999999999999999994 887765
No 320
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=2.5e-07 Score=66.34 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 3456899999999999999999999999999999997
No 321
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.46 E-value=2.1e-07 Score=68.62 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=34.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
..+.++|||+|||+++|+++|+++|++||.|..|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK 45 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 34568999999999999999999999999999999874
No 322
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=3.8e-08 Score=72.59 Aligned_cols=39 Identities=18% Similarity=0.558 Sum_probs=36.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 45 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE 45 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC
Confidence 357999999999999999999999999999999998864
No 323
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.46 E-value=2.1e-07 Score=75.85 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=41.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
...++++|||+|||+.+|+++|+++|++||.|.+|.|+.++.++..|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG 130 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG 130 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEee
Confidence 34567899999999999999999999999999999999988665554
No 324
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.45 E-value=1.5e-07 Score=75.13 Aligned_cols=39 Identities=10% Similarity=0.370 Sum_probs=35.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCG--PIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG--~I~~v~v~~~~~ 264 (274)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~ 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA 94 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC
Confidence 457999999999999999999999999 999999999864
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.45 E-value=5.1e-07 Score=74.50 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=38.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
.++|||+|||+++|+++|+++|++||.|.+|+|+++.+++..|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG 151 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG 151 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCccc
Confidence 4799999999999999999999999999999999987755443
No 326
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.44 E-value=3.9e-07 Score=72.30 Aligned_cols=41 Identities=34% Similarity=0.515 Sum_probs=38.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 76 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM 76 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 34678999999999999999999999999999999999876
No 327
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.43 E-value=2.9e-07 Score=71.52 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=38.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.....++|||+|||+++|+++|+++|++||.|.+|+|+++++
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~ 79 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE 79 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 345678999999999999999999999999999999999875
No 328
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.7e-07 Score=68.72 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=36.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
....++|||+|||+.+|+++|+++|++||.|.+|+|+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 345789999999999999999999999999999999986
No 329
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.2e-07 Score=67.26 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=34.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
....++|||+|||+++|+++|+++|++||.|.+|++.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence 34568999999999999999999999999999999984
No 330
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.42 E-value=1.6e-07 Score=71.54 Aligned_cols=38 Identities=29% Similarity=0.659 Sum_probs=35.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 73 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF 73 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 57999999999999999999999999999999999853
No 331
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.2e-07 Score=68.13 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=36.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCC-eeEEEEe-cCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGP-IASVTVA-RKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~-I~~v~v~-~~~~ 264 (274)
.+.++|||+|||+.+|+++|+++|++||. |.+|.|+ .++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~ 47 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD 47 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 35689999999999999999999999998 9999998 5554
No 332
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=1.9e-07 Score=70.03 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=33.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
.++|||+|||+++|+++|+++|++||.|.+|.|++
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 57999999999999999999999999999999875
No 333
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=4.4e-07 Score=69.88 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=35.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIR----RHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~----~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++..|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG 73 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSG 73 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCC
Confidence 3467899999999999999876 6999999999998864 344444
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.5e-07 Score=70.95 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=36.8
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 228 TTLYIKNL----NFNSTEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 228 ~~lfV~NL----~~~~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
+.|||+|| |+.+++++|+.+|++||+|.+|.++.|+++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T 44 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS 44 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 68999999 999999999999999999999999999985
No 335
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.7e-07 Score=67.09 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=33.4
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNF-NSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~-~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..+.++|||+|||+ .+|+++|+++|++||.|.+|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 34678999999999 99999999999999999999986
No 336
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.40 E-value=2.5e-07 Score=67.84 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=33.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
++|||+|||+++|+++|+++|++||.|.+|.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 58999999999999999999999999999999987
No 337
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.38 E-value=4.4e-07 Score=65.02 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=34.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
.+..|||+||++.+|+++|+++|.+||+|.++++..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 467999999999999999999999999999999976
No 338
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=7.8e-07 Score=64.33 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEE
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v 257 (274)
..++|||+|||+++|+++|+++|++||.|.+|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 45799999999999999999999999999987
No 339
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.37 E-value=2.7e-07 Score=69.09 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=38.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHhhhcCCeeEEEEecCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIR---RHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~---~~F~~fG~I~~v~v~~~~~~ 265 (274)
..+.++|||+|||+++++++|+ ++|++||.|..|+|++++..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~ 56 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSY 56 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSC
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCc
Confidence 3456899999999999999999 99999999999999988753
No 340
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.36 E-value=3e-07 Score=77.98 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=35.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcC--CeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCG--PIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG--~I~~v~v~~~~~ 264 (274)
..++|||+|||+.+|+++|+++|++|| .|.+|+|++++.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~ 107 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA 107 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC
Confidence 457999999999999999999999999 999999999864
No 341
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=3.3e-07 Score=67.17 Aligned_cols=43 Identities=30% Similarity=0.523 Sum_probs=35.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCCCCCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~~~~~g 269 (274)
..+.++|||+|||+.+|+++|+++|++||.| +++++..++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g 54 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKG 54 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEee
Confidence 3467899999999999999999999999987 566665555444
No 342
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=7.3e-07 Score=65.09 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=34.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhc--CCeeEEEEec
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKC--GPIASVTVAR 261 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~f--G~I~~v~v~~ 261 (274)
..+.++|||+|||+.+|+++|+++|++| |.|.+|++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC
Confidence 3467899999999999999999999999 9999998763
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.36 E-value=2.3e-07 Score=70.04 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..++|||+|||+++|+++|+++|++||.|.+|.|+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 4579999999999999999999999999999999875
No 344
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.33 E-value=5.4e-07 Score=67.20 Aligned_cols=37 Identities=19% Similarity=0.468 Sum_probs=34.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3467899999999999999999999999999999997
No 345
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.33 E-value=7.4e-07 Score=65.04 Aligned_cols=37 Identities=24% Similarity=0.480 Sum_probs=34.2
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNF-NSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~-~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..++++|||+|||+ .+++++|+++|++||.|.+|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 44678999999999 99999999999999999999984
No 346
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.33 E-value=1.7e-07 Score=67.87 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=35.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
+.++|||+|||+.+|+++|+++|++||.|..+.++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~ 52 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 52 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC
Confidence 458999999999999999999999999999988888754
No 347
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.32 E-value=3.6e-07 Score=68.70 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcC-CeeEEEEecC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCG-PIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG-~I~~v~v~~~ 262 (274)
+...++|||+|||+++|+++|+++|++|| .|..|.|..+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~ 64 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR 64 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC
Confidence 34567999999999999999999999999 9999999643
No 348
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=2.2e-07 Score=70.90 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=35.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec-CCCCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR-KKDPKS 267 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~-~~~~~~ 267 (274)
...++|||+|||+++|+++|+++|++||.|..+.++. +.+++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~ 66 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 66 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCC
Confidence 3568999999999999999999999999999854444 444443
No 349
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.29 E-value=7.6e-07 Score=64.56 Aligned_cols=38 Identities=34% Similarity=0.642 Sum_probs=34.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhhcCCeeEEEEec
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIR----RHFKKCGPIASVTVAR 261 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~----~~F~~fG~I~~v~v~~ 261 (274)
..++++|||+|||+++|+++|+ ++|++||.|.+|.|++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc
Confidence 3467899999999999999999 9999999999999874
No 350
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=3.3e-07 Score=66.74 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=35.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...++|||+|||+.+|+++|+++|++||.|..+.++.++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~ 52 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 52 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC
Confidence 3467999999999999999999999999999888887653
No 351
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=6.2e-07 Score=67.65 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=34.3
Q ss_pred CCCCceEEE--eCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 224 PEPDTTLYI--KNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 224 ~~~~~~lfV--~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
..++++||| +||++++|+++|+++|++||.|.+|.|+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~ 62 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN 62 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 346789999 569999999999999999999999988753
No 352
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.58 E-value=1.2e-07 Score=71.53 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=36.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeE--------EEEecCCC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS--------VTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~--------v~v~~~~~ 264 (274)
.+.++|||+|||+.+|+++|+++|++||.|.+ |+|++++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~ 52 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE 52 (116)
Confidence 35689999999999999999999999999999 89998854
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.24 E-value=9.8e-07 Score=68.10 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..|||+||++.+|+++|+++|++||.|.+|+|..+.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~ 64 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 64 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC
Confidence 478899999999999999999999999999998754
No 354
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.23 E-value=1.3e-06 Score=64.96 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=32.8
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEE
Q psy3343 225 EPDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTV 259 (274)
Q Consensus 225 ~~~~~lfV~NL~~~-~tee~L~~~F~~fG~I~~v~v 259 (274)
...++|||+|||+. +|+++|+++|++||.|..|.|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 34689999999999 999999999999999999998
No 355
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.9e-06 Score=62.61 Aligned_cols=37 Identities=14% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
...++|||+|||+.+|+++|+++|++||.|. ++++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~ 53 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ 53 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC
Confidence 4568999999999999999999999999997 677654
No 356
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.20 E-value=1.5e-06 Score=61.55 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=34.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhc----C-------CeeEEEEecC
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKC----G-------PIASVTVARK 262 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~f----G-------~I~~v~v~~~ 262 (274)
+.++|||+|||+++|+++|+++|++| | .|.++++.++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 45799999999999999999999999 8 9999999865
No 357
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=2.9e-06 Score=63.45 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=32.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCe----eEEEEe
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPI----ASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I----~~v~v~ 260 (274)
..++++|||+|||+.+|+++|+++|++||.| ..+++.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~ 62 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM 62 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC
Confidence 3467899999999999999999999999999 566655
No 358
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.16 E-value=2.7e-06 Score=65.16 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=31.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 229 ~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
.|||+||++.+|+++|+++|++||.|.+|+|..+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~ 60 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR 60 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 5789999999999999999999999999999763
No 359
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=1.4e-06 Score=62.74 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCC-eeEEEEe
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGP-IASVTVA 260 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~-I~~v~v~ 260 (274)
.+.++|||+|||+++|+++|+++|++||. |..+.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~ 42 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 42 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc
Confidence 45689999999999999999999999999 6666664
No 360
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.16 E-value=2.4e-06 Score=68.47 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=33.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..+|||+||++.+|+++|+++|++||.|.+|+|..+.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~ 82 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 82 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 3579999999999999999999999999999997654
No 361
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2.6e-05 Score=57.01 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHcccc-----CCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEP-----FGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~-----~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
....+|.|.|||+.+.++-|.-+|+. -|.|..+...+ +-|+|+|.+...|++.++. ....|++.+|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 34589999999999999999999987 26788888776 6799999999999999862 367788888888654
No 362
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.11 E-value=2.9e-07 Score=67.44 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
.+.++|||+|||+++|+++|+++|++||.|.. .++++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~ 51 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD 51 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec
Confidence 35689999999999999999999999999888 55554
No 363
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.10 E-value=8.2e-07 Score=69.36 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEE
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v 257 (274)
..++++|||+|||+.+|+++|+++|++||.|.+|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 3467899999999999999999999999999874
No 364
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.05 E-value=8.8e-07 Score=64.14 Aligned_cols=33 Identities=39% Similarity=0.513 Sum_probs=30.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEE
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v 257 (274)
.+.++|||+|||+.+|+++|+++|++||.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 456899999999999999999999999988776
No 365
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=4.4e-06 Score=63.51 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=38.4
Q ss_pred CCCCCceEEEeCCCCC-CCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~-~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
...+++.|||+||+.. +++++|+++|++||+|.+|.++++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4568999999999999 99999999999999999999987653
No 366
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=1.1e-05 Score=58.49 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..+.++|||+|| ++|+++|+++|++||.|.+|.|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence 346789999996 89999999999999999999995
No 367
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.99 E-value=5e-06 Score=59.26 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..++|||+|||+++|+++|+++|++| .|.+|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 45799999999999999999999999 99999985
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.93 E-value=6.7e-06 Score=70.00 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=34.9
Q ss_pred CCCceEEEeCCCCCC---------CHHHHHHHhhhcCCeeEEEEecC
Q psy3343 225 EPDTTLYIKNLNFNS---------TEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~---------tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
...++|||+||++.+ ++++|+++|++||.|.+|+|+..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~ 178 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES 178 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence 356899999999998 79999999999999999999865
No 369
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=2e-05 Score=56.98 Aligned_cols=30 Identities=40% Similarity=0.644 Sum_probs=26.4
Q ss_pred ceEEEeCCCCCCCHHH----HHHHhhhc-CCeeEE
Q psy3343 228 TTLYIKNLNFNSTEDS----IRRHFKKC-GPIASV 257 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~----L~~~F~~f-G~I~~v 257 (274)
+.|||+|||+.+++++ |+++|++| |+|.+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 3499999999999988 55899999 599988
No 370
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.76 E-value=3.9e-05 Score=56.78 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=33.9
Q ss_pred CCCceEEEeCCCC-----CCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 225 EPDTTLYIKNLNF-----NSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 225 ~~~~~lfV~NL~~-----~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.++++|+|+||.. +.++++|++.|++||.|.+|.|+++++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~ 50 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG 50 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4678999999963 237899999999999999999999865
No 371
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=3.3e-05 Score=56.32 Aligned_cols=38 Identities=21% Similarity=0.537 Sum_probs=32.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
..+.++|||+|||+.+|+++|+++|++|+ .|++++++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~ 49 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE 49 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC
Confidence 44678999999999999999999999874 677777753
No 372
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.75 E-value=3e-05 Score=58.88 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEe
Q psy3343 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~ 260 (274)
..++++|||+|| ++|+++|+++|++||.|.+|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe
Confidence 346789999996 69999999999999999999996
No 373
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=7.6e-05 Score=54.69 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=64.0
Q ss_pred CcEEEEeCCCCCC-C----HHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q psy3343 96 KRIILVKNLPYRT-L----PTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 168 (274)
Q Consensus 96 ~~~l~V~nLp~~~-t----e~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 168 (274)
.++|+|.||+..+ . .+.++.+|..|+++......++=.=..|.|.++++|.+|-..|++..+.|+.++|-+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 5889999998865 2 25789999999999888877765567999999999999999999999999999999986
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.59 E-value=4.6e-05 Score=68.26 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=34.2
Q ss_pred CCCCCceEEEeC--CCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 223 EPEPDTTLYIKN--LNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 223 ~~~~~~~lfV~N--L~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
...++.+|||+| |++.+|+++|+++|++||.|.+|.+..
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 345778999999 578999999999999999999988754
No 375
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00058 Score=49.01 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=60.2
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC--------eEEEEEecCHHHHHHHHHHhCCCeeCC-----eEEE
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG--------ITGLVEFLQKNQAKAAFNSLAYTKFKE-----VPLY 163 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~--------~~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l~ 163 (274)
+.|.|++||+.+|++++.+.++....+......+.+ .-|||.|.+.+++..-.+.++|..|.+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578899999999999999999999887766664421 469999999999999999999988753 2346
Q ss_pred EEEecCC
Q psy3343 164 LEWAPEG 170 (274)
Q Consensus 164 v~~a~~~ 170 (274)
|++|+-.
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 7887643
No 376
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.20 E-value=0.0011 Score=47.79 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=45.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 153 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~ 153 (274)
..+++| ++|+.....||.++|+.||.| .|... +-..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEE-ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 366666 999999999999999999954 33333 34589999999999999998764
No 377
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.0013 Score=49.38 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCC-eEEEEEEe
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE-VPLYLEWA 167 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g-~~l~v~~a 167 (274)
..+.|.|-++|+.. ...+...|++||.|.+...+..+.+-.|.|.++.+|++|+. .||..+.| ..|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45889999999885 66788899999999999887677899999999999999997 69999985 44555543
No 378
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00063 Score=50.47 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCCCceEEEeCCCCCCC-----------HHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 223 EPEPDTTLYIKNLNFNST-----------EDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~~t-----------ee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
.+.++++|+|+||..... +++|+++|++||.|.+|.| .++.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~ 62 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH 62 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC
Confidence 445678999999944332 5899999999999999966 4443
No 379
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.12 E-value=0.00066 Score=49.13 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=45.0
Q ss_pred cEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhC
Q psy3343 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 153 (274)
Q Consensus 97 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~ 153 (274)
.+++| ++|++....||.++|+.||. ..|... +-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 55666 99999999999999999993 344444 34689999999999999999875
No 380
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.09 E-value=0.00049 Score=50.74 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=33.6
Q ss_pred CCCceEEEeCC--CCCCC--------HHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 225 EPDTTLYIKNL--NFNST--------EDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 225 ~~~~~lfV~NL--~~~~t--------ee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
.|+++|.++|+ |.... +++|++.|++||.|.+|+|++++++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~ 53 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG 53 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC
Confidence 36789999998 33333 3799999999999999999998764
No 381
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0041 Score=45.35 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=29.4
Q ss_pred CceEEEeCCC-------CCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 227 DTTLYIKNLN-------FNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 227 ~~~lfV~NL~-------~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
..+|.|.... ..+|+++|+++|++||.|..|+|+.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS 51 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc
Confidence 3577777654 5689999999999999999999984
No 382
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.68 E-value=0.0051 Score=44.41 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=55.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC--------eEEEEEecCHHHHHHHHHHhCCCeeCC-----eEE
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG--------ITGLVEFLQKNQAKAAFNSLAYTKFKE-----VPL 162 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~--------~~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l 162 (274)
.-.|.|+.||+.+|++++.+.++..=.+......+.+ .-|||.|.+.++...-.+.++|..|.+ -+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 3578899999999999999888876444333332211 358999999999999999999987743 245
Q ss_pred EEEEecC
Q psy3343 163 YLEWAPE 169 (274)
Q Consensus 163 ~v~~a~~ 169 (274)
.|++||-
T Consensus 89 ~VE~APy 95 (97)
T 2l08_A 89 VVEFAPF 95 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 6788763
No 383
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.67 E-value=0.00021 Score=52.67 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=30.7
Q ss_pred EeCCCCCCCHHHHHHHh------------hhcCCeeEEEEecCCCCCCCC
Q psy3343 232 IKNLNFNSTEDSIRRHF------------KKCGPIASVTVARKKDPKSPG 269 (274)
Q Consensus 232 V~NL~~~~tee~L~~~F------------~~fG~I~~v~v~~~~~~~~~g 269 (274)
+.|||+.+++++|+++| ++||.|.+|+|++++.+++.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G 69 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVG 69 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccE
Confidence 56788888888888777 999999999999987765544
No 384
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.58 E-value=0.00097 Score=61.78 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=42.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCC-eEEEEEecCHHHHHHHHH
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-ITGLVEFLQKNQAKAAFN 150 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~-~~afV~F~~~~~A~~A~~ 150 (274)
.++|+|. .|..+++.+|.++|++||+|.++.+..++ .||+|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 3789997 79999999999999999999999998865 599999999999997765
No 385
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.42 E-value=0.0027 Score=47.81 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCceEEEeCCCC--CC---CHHHHHHHhhhcCCeeEEEEecCCC
Q psy3343 226 PDTTLYIKNLNF--NS---TEDSIRRHFKKCGPIASVTVARKKD 264 (274)
Q Consensus 226 ~~~~lfV~NL~~--~~---tee~L~~~F~~fG~I~~v~v~~~~~ 264 (274)
++++|+++|+-. ++ -+++|++.|++||.|.+|.|++++.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC
Confidence 578999999942 22 3699999999999999999999865
No 386
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.43 E-value=0.017 Score=43.91 Aligned_cols=71 Identities=20% Similarity=0.075 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHccccCCCeeE-EEee-----------------C--CCeEEEEEecCHHHHHHHHHHhCC
Q psy3343 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGR-VLVP-----------------P--YGITGLVEFLQKNQAKAAFNSLAY 154 (274)
Q Consensus 95 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~l~-----------------~--~~~~afV~F~~~~~A~~A~~~l~~ 154 (274)
..+.|.|-+.|+... ..+...|++||.|.+ +... . .+++..|+|.++.+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 347788889987654 566679999999866 2111 1 24688999999999999997 699
Q ss_pred CeeCCeEEEEEEe
Q psy3343 155 TKFKEVPLYLEWA 167 (274)
Q Consensus 155 ~~~~g~~l~v~~a 167 (274)
..|.|..|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999998788765
No 387
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.017 Score=41.24 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.3
Q ss_pred CCCceEEEeCCC----CCCCH----HHHHHHhhhcCCeeEEEEecCC
Q psy3343 225 EPDTTLYIKNLN----FNSTE----DSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 225 ~~~~~lfV~NL~----~~~te----e~L~~~F~~fG~I~~v~v~~~~ 263 (274)
++..||+|...+ ..+-+ .+|.+.|++||.|..++|+.++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 466788888876 23444 7899999999999999998765
No 388
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.80 E-value=0.049 Score=40.47 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCCCceEEEeCCCCCC----------CHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 224 PEPDTTLYIKNLNFNS----------TEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 224 ~~~~~~lfV~NL~~~~----------tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
+.++++|.++|+=..- .+++|++.|++||.|.+|.|.++.
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~ 53 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS 53 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC
Confidence 3567899999983321 236899999999999999997764
No 389
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.05 E-value=0.044 Score=39.29 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCCCCceEEEeCCCCC-----CCH----HHHHHHhhhcCCeeEEEEecCC
Q psy3343 223 EPEPDTTLYIKNLNFN-----STE----DSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 223 ~~~~~~~lfV~NL~~~-----~te----e~L~~~F~~fG~I~~v~v~~~~ 263 (274)
..+|..||+|..++.. +-+ .+|.+.|++||.|..+++..++
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 3457789999988743 333 6799999999999999998774
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.96 E-value=0.38 Score=34.58 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCe
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPI 254 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~fG~I 254 (274)
...++| ++|..+.-.+|.++|++||.|
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv 42 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI 42 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE
Confidence 346777 999999999999999999965
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=89.43 E-value=0.69 Score=32.79 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=31.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecCC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~~ 263 (274)
+.|.|++||+..|++++.+..+..+.+.+...+.-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~ 37 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND 37 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc
Confidence 478999999999999999999999988887776544
No 392
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.02 E-value=0.91 Score=42.44 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=46.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHhCC
Q psy3343 96 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY 154 (274)
Q Consensus 96 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~ 154 (274)
...++|+ +|..+...+|.++|+.||.+ +|+.. +...|||.|.+++.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3677776 99999999999999999954 44433 456899999999999999998854
No 393
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=87.90 E-value=0.73 Score=33.88 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=35.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhc-----CCeeEEEEecCCCC
Q psy3343 227 DTTLYIKNLNFNSTEDSIRRHFKKC-----GPIASVTVARKKDP 265 (274)
Q Consensus 227 ~~~lfV~NL~~~~tee~L~~~F~~f-----G~I~~v~v~~~~~~ 265 (274)
.++|-+-|||..+++..++.+.+++ |.|..+.+..|-.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G 64 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG 64 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc
Confidence 5789999999999999999999999 99999999887654
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=85.92 E-value=0.46 Score=34.23 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCe
Q psy3343 229 TLYIKNLNFNSTEDSIRRHFKKCGPI 254 (274)
Q Consensus 229 ~lfV~NL~~~~tee~L~~~F~~fG~I 254 (274)
.++| ++|..+.-.+|.++|++||.|
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE
Confidence 5666 999999999999999999954
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.71 E-value=7 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhh---c--CCeeEEEEe
Q psy3343 225 EPDTTLYIKNLNFNSTEDSIRRHFKK---C--GPIASVTVA 260 (274)
Q Consensus 225 ~~~~~lfV~NL~~~~tee~L~~~F~~---f--G~I~~v~v~ 260 (274)
..+.+|.|.|||..++++.|.-+|+. - |.|.++...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc
Confidence 34679999999999999999999986 2 557776653
No 396
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=74.27 E-value=1.4 Score=35.96 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCHHHHHHHhhhcCCeeEEEEecCCCC
Q psy3343 239 STEDSIRRHFKKCGPIASVTVARKKDP 265 (274)
Q Consensus 239 ~tee~L~~~F~~fG~I~~v~v~~~~~~ 265 (274)
-.+++|++.|++||.|.++.|+++..+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~ 167 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQG 167 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCC
Confidence 356899999999999999999977654
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=73.73 E-value=1.9 Score=39.76 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=27.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEecC
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~~ 262 (274)
++|||. .|..+++.+|.++|++||+|.++..-++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~ 87 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES 87 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc
Confidence 689997 7999999999999999999999877654
No 398
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=67.71 E-value=15 Score=31.09 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=58.2
Q ss_pred ccccccccChhHHHHHHHHHhCCCcccccC---CchhHHH-hhhhhh---------hHHHHHHHHHHHCCCC---ccccc
Q psy3343 25 HTWNSLFLGTNAIAEAMAETYNATKAEVLT---GSGAATR-LAMGET---------EIVEKTRAFLEENGVQ---LDAFN 88 (274)
Q Consensus 25 ~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~---~~~~avr-~al~e~---------~~~~~~~~~l~~~g~~---~~~~~ 88 (274)
..|.-=|+.+..+++.|.+..++....++| |.+...+ ++.... ..+...++.+....+. -+.+.
T Consensus 23 k~~GQnfL~d~~i~~~Iv~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~ 102 (271)
T 3fut_A 23 KRFGQNFLVSEAHLRRIVEAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALL 102 (271)
T ss_dssp TTSSCCEECCHHHHHHHHHHHCCCCSCEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGG
T ss_pred ccCCccccCCHHHHHHHHHhcCCCCCeEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhh
Confidence 456566888889999999999988777788 3333332 221111 2333333333211121 11111
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEE
Q psy3343 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 126 (274)
Q Consensus 89 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 126 (274)
..-.......+.|+|||+.++..-|..++.. +.+...
T Consensus 103 ~~~~~~~~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 103 YPWEEVPQGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp SCGGGSCTTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CChhhccCccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 1111112356789999999999999999977 555433
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=65.15 E-value=3.7 Score=29.33 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=25.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEE
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v 257 (274)
-.|.|+.||+..|++++.+.+++.-.+.+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~ 39 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYF 39 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceE
Confidence 479999999999999999988877665443
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.78 E-value=14 Score=26.57 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=25.8
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHhhhcCCeeEEEEe
Q psy3343 227 DTTLYIKNLNFNS-T----EDSIRRHFKKCGPIASVTVA 260 (274)
Q Consensus 227 ~~~lfV~NL~~~~-t----ee~L~~~F~~fG~I~~v~v~ 260 (274)
.++|+|.||+..+ . .+.++++|..|+++.+....
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 4689999998765 2 26789999999987765443
No 401
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=45.99 E-value=32 Score=24.48 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=51.5
Q ss_pred HHHHhCCCccccccccChhHHHHHHHHHhCCCcccccCCchhH-HHhhhhhhhHHHHHHHHHHHCCCCccccch
Q psy3343 17 LKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLTGSGAA-TRLAMGETEIVEKTRAFLEENGVQLDAFNQ 89 (274)
Q Consensus 17 ~~~~~~~~~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~~~~~a-vr~al~e~~~~~~~~~~l~~~g~~~~~~~~ 89 (274)
.+......++....++-.++....||.....+..+|..-.++. .++.. |..++...+.+...+++..+.|+.
T Consensus 24 wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~-y~~~L~~I~~~~~~~~i~~~~~~~ 96 (103)
T 2e1f_A 24 ARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAM-LAPLLEVIKHFCQTNSVQTDLFSS 96 (103)
T ss_dssp HHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHH-THHHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCCCcCCCCC
Confidence 3334445567777788889999999999999999998811222 23333 366777778888889888877754
No 402
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=39.71 E-value=35 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEE
Q psy3343 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 259 (274)
Q Consensus 226 ~~~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v 259 (274)
..+-|.|.+.|... -..+..+|++||.|.....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 35688999998886 5677789999999998876
No 403
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=39.01 E-value=51 Score=27.36 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred ccChhHHHHHHHHHhCCCccc-ccC---CchhHHHhhhhhh----------hHHHHHHHHHHHCCCC------ccccchh
Q psy3343 31 FLGTNAIAEAMAETYNATKAE-VLT---GSGAATRLAMGET----------EIVEKTRAFLEENGVQ------LDAFNQV 90 (274)
Q Consensus 31 f~~~~~v~~~~~~~~~~~~~~-l~~---~~~~avr~al~e~----------~~~~~~~~~l~~~g~~------~~~~~~~ 90 (274)
|+.+..+++.|.+..++...+ ++| |.+...+...... ..+..+++.+...+-- ...+.-+
T Consensus 11 FL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 11 FLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred cccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEee
Q psy3343 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 129 (274)
Q Consensus 91 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~ 129 (274)
.......-..|+|||+.++..-|..++...+.+..+.++
T Consensus 91 ~~~~~~~~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 91 SVKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp GSCCSSCEEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred HhccCCCeEEEecCCcccCHHHHHHHHhCCCChheEEEE
No 404
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=33.25 E-value=14 Score=20.62 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.9
Q ss_pred CCccccccccChh
Q psy3343 23 HVHTWNSLFLGTN 35 (274)
Q Consensus 23 ~~~~wn~lf~~~~ 35 (274)
+..+|+|||=+.-
T Consensus 16 ~~~~WtSLFDdDI 28 (34)
T 2ko4_B 16 NSKEWTSLFDNDI 28 (34)
T ss_dssp SSGGGTTTTSCCC
T ss_pred CcchhhhhccCCc
Confidence 4578999997654
No 405
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=31.75 E-value=46 Score=24.14 Aligned_cols=74 Identities=24% Similarity=0.206 Sum_probs=51.9
Q ss_pred HHHHHhCCCccccccccChhHHHHHHHHHhCCCcccccCCchhHHHhhhhhhhHHHHHHHHHHHCCCCccccch
Q psy3343 16 ELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLTGSGAATRLAMGETEIVEKTRAFLEENGVQLDAFNQ 89 (274)
Q Consensus 16 ~~~~~~~~~~~wn~lf~~~~~v~~~~~~~~~~~~~~l~~~~~~avr~al~e~~~~~~~~~~l~~~g~~~~~~~~ 89 (274)
..+......++....++-.|+....||.....+..+|+.-..+.-+....|..++...+.+...+++.++.|..
T Consensus 30 ~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y~~~L~~I~~~~~~~~~~~~~~~~ 103 (113)
T 2dgz_A 30 EARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAPLWEVIKHFCQTNSVQTDLFSS 103 (113)
T ss_dssp HHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGGHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 33444455677778888899999999999999999998711222222222266777778888888888877654
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.04 E-value=1.1e+02 Score=23.92 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=32.8
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHcc--ccCCCeeEEEeeCC---CeEEEEEecCHH
Q psy3343 97 RIILVKNLPY-R--------TLPTDLKALF--EPFGDLGRVLVPPY---GITGLVEFLQKN 143 (274)
Q Consensus 97 ~~l~V~nLp~-~--------~te~~l~~~F--~~~G~i~~v~l~~~---~~~afV~F~~~~ 143 (274)
..+.|-|+|. . ....+|++.| +.|.++.-..+.-. .|+++|.|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 4556778887 2 4557899977 99998765444332 268999999643
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.46 E-value=47 Score=21.66 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCCHHHHHHccccCCC-----eeEEEeeCCCeEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q psy3343 107 RTLPTDLKALFEPFGD-----LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167 (274)
Q Consensus 107 ~~te~~l~~~F~~~G~-----i~~v~l~~~~~~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 167 (274)
.+...+|..++..-+. |-.|.+.. .|.||+-.. ..|..++..|++..+.|+.+.++.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 4666777777765443 45666643 478888775 5678889999999999999888765
No 408
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.11 E-value=17 Score=27.88 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=18.5
Q ss_pred HHHHHccccCCCeeEEEeeCCCeEEEEEec
Q psy3343 111 TDLKALFEPFGDLGRVLVPPYGITGLVEFL 140 (274)
Q Consensus 111 ~~l~~~F~~~G~i~~v~l~~~~~~afV~F~ 140 (274)
+|+.++|...|.|.... ..+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 56778888888776554 36789999976
No 409
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.91 E-value=66 Score=26.98 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=28.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
..+.|.|||+.++..-|..++.. +.+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999988 8888887764
No 410
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.39 E-value=34 Score=28.88 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=29.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCeeEEEEec
Q psy3343 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261 (274)
Q Consensus 228 ~~lfV~NL~~~~tee~L~~~F~~fG~I~~v~v~~ 261 (274)
....|.|||+.++..-|..++.....+..+.+|.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3678999999999999999998777788887774
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.45 E-value=2.2e+02 Score=19.72 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHccccCCCeeEEEeeCCCeEEEEEecCHHHHHHHHHHh
Q psy3343 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL 152 (274)
Q Consensus 94 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~l~~~~~~afV~F~~~~~A~~A~~~l 152 (274)
..++-|-|-|+|..+-..++--...-.|---.|... .|.|.+.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHH
Confidence 346888899999999988887666666655455433 357999999999999999876
Done!