Your job contains 1 sequence.
>psy3343
PGIDEGSSYKTKKAKELKKIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLTGSGAAT
RLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPF
GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSK
GKEKEKNEEGEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNST
EDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3343
(274 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 467 8.4e-53 2
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 446 7.7e-52 2
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 446 7.8e-50 2
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 437 2.8e-48 2
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 434 4.3e-48 2
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 432 1.9e-47 2
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 421 3.1e-46 2
FB|FBgn0036018 - symbol:CG3335 species:7227 "Drosophila m... 394 6.0e-46 2
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 339 1.3e-38 2
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 350 6.1e-37 2
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 349 3.8e-36 2
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 313 7.6e-36 2
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 304 9.7e-34 2
TAIR|locus:4515103541 - symbol:AT5G08695 species:3702 "Ar... 305 5.8e-30 2
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 284 2.3e-29 2
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 274 8.9e-29 2
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 254 1.2e-26 2
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 96 0.00012 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 91 0.00059 2
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 467 (169.5 bits), Expect = 8.4e-53, Sum P(2) = 8.4e-53
Identities = 95/175 (54%), Positives = 120/175 (68%)
Query: 1 PGIDEGSSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLT--GSGA 58
P SSY +G H WN+LFLGT+A+A+A+AE YN TK++VL G+
Sbjct: 486 PDAPGSSSYKRKKDAKDKAASGSSHNWNTLFLGTSAVADAIAEKYNTTKSQVLDHESDGS 545
Query: 59 -ATRLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALF 117
A R+A+GET+IV++TR FL +NGV LD+F+Q RSK +ILVKNLP DL+ALF
Sbjct: 546 LAVRMALGETQIVQETRQFLLDNGVSLDSFSQASGERSKCVILVKNLPSGVQVADLEALF 605
Query: 118 EPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
P G LGRVL+PP G+T +VEFL+ +AK AF LAYTKF+ VPLYLEWAP VF
Sbjct: 606 SPHGSLGRVLLPPSGLTAIVEFLEPTEAKRAFMKLAYTKFQHVPLYLEWAPVAVF 660
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 79 ENGV-QLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG-- 135
++GV Q Q ++ ILV+N+P++ +L+ LF FG+L V +P GI G
Sbjct: 786 KSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSH 845
Query: 136 ----LVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWA 167
++FL K AK AF++L + T L LEWA
Sbjct: 846 RGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVLEWA 882
Score = 115 (45.5 bits), Expect = 8.4e-53, Sum P(2) = 8.4e-53
Identities = 22/47 (46%), Positives = 38/47 (80%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+TL+IKNLNF ++E+++++ F KCG + S T+++K+D K+ G+ LSM
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRD-KA-GKLLSM 746
Score = 74 (31.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 74 RAFLEENGVQ--LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY 131
R+ +E+N V+ D + A S R+ ++N+PY DLK LF G L VL P
Sbjct: 375 RSEMEKNFVRELKDDEEEEDVAESGRLF-IRNMPYTCTEEDLKELFSKHGPLSEVLFPID 433
Query: 132 GIT 134
+T
Sbjct: 434 SLT 436
Score = 42 (19.8 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F +T +R F G + +V + +K
Sbjct: 807 ILVRNIPFQATVKELRELFCTFGELKTVRLPKK 839
Score = 41 (19.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDL 123
++VKNLP + +F FG L
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTL 28
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 446 (162.1 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 90/172 (52%), Positives = 118/172 (68%)
Query: 4 DEGSSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAAT 60
+E SSY + H WN+LF+GTNA+A+A+A+ YNA+K++VL + A
Sbjct: 167 EESSSYKKQKEAKDKANSASSHNWNTLFVGTNAVADAIAQKYNASKSQVLDHESKDSVAV 226
Query: 61 RLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPF 120
R+A+GETE+V++ R FL ENGV LD+F+Q RSK +ILVKNLP T +L+A+F
Sbjct: 227 RVALGETELVQEIRRFLIENGVSLDSFSQAAGERSKTVILVKNLPATTSTAELEAVFGKH 286
Query: 121 GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
G LGRVL+P GIT +VEFL+ +AK AF LAY+KF VPLYLEWAP GVF
Sbjct: 287 GSLGRVLLPTGGITAIVEFLEPIEAKQAFTKLAYSKFHSVPLYLEWAPMGVF 338
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT-----GLVEFLQ 141
Q V+ + ILV+N+P++ +++ LF FG+L V +P G G V+FL
Sbjct: 487 QTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLT 546
Query: 142 KNQAKAAFNSLAY-TKFKEVPLYLEWA 167
K AK AFN+L + T L LEWA
Sbjct: 547 KQDAKKAFNALCHSTHLYGRRLVLEWA 573
Score = 109 (43.4 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF +TE +++ F K G + S T+++KKD K+ G LSM
Sbjct: 394 TLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKD-KA-GTLLSM 437
Score = 60 (26.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 129
+ V+NLP+ + DL+ +F +G L + P
Sbjct: 80 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFP 110
Score = 46 (21.3 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F +T IR F G + +V + +K
Sbjct: 497 ILVRNIPFQATVREIRELFSTFGELKTVRLPKK 529
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 446 (162.1 bits), Expect = 7.8e-50, Sum P(2) = 7.8e-50
Identities = 90/172 (52%), Positives = 118/172 (68%)
Query: 4 DEGSSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAAT 60
+E SSY + H WN+LF+GTNA+A+A+A+ YNA+K++VL + A
Sbjct: 491 EESSSYKKQKEAKDKANSASSHNWNTLFVGTNAVADAIAQKYNASKSQVLDHESKDSVAV 550
Query: 61 RLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPF 120
R+A+GETE+V++ R FL ENGV LD+F+Q RSK +ILVKNLP T +L+A+F
Sbjct: 551 RVALGETELVQEIRRFLIENGVSLDSFSQAAGERSKTVILVKNLPATTSTAELEAVFGKH 610
Query: 121 GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
G LGRVL+P GIT +VEFL+ +AK AF LAY+KF VPLYLEWAP GVF
Sbjct: 611 GSLGRVLLPTGGITAIVEFLEPIEAKQAFTKLAYSKFHSVPLYLEWAPMGVF 662
Score = 115 (45.5 bits), Expect = 0.00067, P = 0.00067
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT-----GLVEFLQ 141
Q V+ + ILV+N+P++ +++ LF FG+L V +P G G V+FL
Sbjct: 811 QTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLT 870
Query: 142 KNQAKAAFNSLAY-TKFKEVPLYLEWA 167
K AK AFN+L + T L LEWA
Sbjct: 871 KQDAKKAFNALCHSTHLYGRRLVLEWA 897
Score = 109 (43.4 bits), Expect = 7.8e-50, Sum P(2) = 7.8e-50
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF +TE +++ F K G + S T+++KKD K+ G LSM
Sbjct: 718 TLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKD-KA-GTLLSM 761
Score = 60 (26.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 129
+ V+NLP+ + DL+ +F +G L + P
Sbjct: 404 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFP 434
Score = 46 (21.3 bits), Expect = 3.3e-43, Sum P(2) = 3.3e-43
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F +T IR F G + +V + +K
Sbjct: 821 ILVRNIPFQATVREIRELFSTFGELKTVRLPKK 853
Score = 46 (21.3 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFN 150
++VKNLP + LF FG L + + G + + +++A+AA N
Sbjct: 4 LIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALN 60
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 437 (158.9 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 87/171 (50%), Positives = 115/171 (67%)
Query: 5 EGSSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATR 61
+GSSY + H WN+LF+G NA+A+A+A+ YNATK++V T A R
Sbjct: 494 QGSSYKKKKESKDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVR 553
Query: 62 LAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG 121
+A+GET++V++ R FL +NGV LD+F+Q RSK +ILVKNLP TL +L+ F FG
Sbjct: 554 VALGETQLVQEVRRFLLDNGVSLDSFSQAAAERSKTVILVKNLPAGTLVAELQETFGRFG 613
Query: 122 DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
LGRVL+P GIT +VEFL+ +A+ AF LAY+KF PLYLEWAP GVF
Sbjct: 614 SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHTPLYLEWAPVGVF 664
Score = 104 (41.7 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 21/46 (45%), Positives = 36/46 (78%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF++TE++++ F K G + S ++++KK+ K+ G+ LSM
Sbjct: 731 TLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKN-KA-GELLSM 774
Score = 67 (28.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 134
+ ++NLPY + DL+ LF FG L + P +T
Sbjct: 407 LFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLT 442
Score = 39 (18.8 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F + + I+ F G + +V + +K
Sbjct: 834 ILVRNIPFQADKREIQELFSTFGELKTVRLPKK 866
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 434 (157.8 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 86/170 (50%), Positives = 115/170 (67%)
Query: 6 GSSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATRL 62
GSSY + H WN+LF+G NA+A+A+A+ YNATK++V T A R+
Sbjct: 490 GSSYKKKKEAMDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRV 549
Query: 63 AMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD 122
A+GET++V++ R+FL +NGV LD+F+Q RSK +IL KNLP TL +++ F FG
Sbjct: 550 ALGETQLVQEVRSFLIDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGS 609
Query: 123 LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
LGRVL+P GIT +VEFL+ +A+ AF LAY+KF VPLYLEWAP GVF
Sbjct: 610 LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 659
Score = 105 (42.0 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF++TE++++ F K G I S T+++KK+ K+ G LSM
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN-KA-GVLLSM 766
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 134
+ V+NL Y + DL+ LF +G L + P +T
Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT 437
Score = 45 (20.9 bits), Expect = 8.6e-42, Sum P(2) = 8.6e-42
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F + + IR F G + +V + +K
Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVRLPKK 858
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 432 (157.1 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 87/169 (51%), Positives = 113/169 (66%)
Query: 7 SSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATRLA 63
SSY + H WN+LF+G NA+A+A+A+ YNATK++V T A R+A
Sbjct: 494 SSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVA 553
Query: 64 MGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 123
+GET++V++ R FL +NGV LD+F+Q RSK +ILVKNLP TL L+ F FG L
Sbjct: 554 LGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSL 613
Query: 124 GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
GRVL+P GIT +VEFL+ +A+ AF LAY+KF VPLYLEWAP GVF
Sbjct: 614 GRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVF 662
Score = 101 (40.6 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF++TE+ ++ F K G + S ++++KK+ K+ G LSM
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKN-KA-GVLLSM 774
Score = 67 (28.6 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 134
A S R+ V+NLPY + DL+ LF +G L + P +T
Sbjct: 399 AESGRLF-VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLT 439
Score = 41 (19.5 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F + IR F G + +V + +K
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKK 866
Score = 35 (17.4 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 26 TWNSLFLGTNAIAEAMAET 44
+W LG N E +AE+
Sbjct: 383 SWQGRILGENEEEEDLAES 401
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 421 (153.3 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 83/169 (49%), Positives = 112/169 (66%)
Query: 7 SSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATRLA 63
SSY + H WN+LF+G NA+A+A+A+ YN+TK++V T A R+A
Sbjct: 495 SSYKKKKESKDKASSSSSHNWNTLFMGPNAVADAIAQKYNSTKSQVFDHETKGSVAVRVA 554
Query: 64 MGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 123
+GET++V++ R FL +NGV LD+F+Q RSK +IL KNLP T +L+ F FG L
Sbjct: 555 LGETQLVQEVRRFLLDNGVSLDSFSQAAAERSKTVILAKNLPAGTQAAELQETFGRFGSL 614
Query: 124 GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
GRVL+P G+T +VEFL+ +A+ AF LAY+KF VPLYLEWAP GVF
Sbjct: 615 GRVLLPEGGVTAIVEFLEALEARKAFRHLAYSKFHHVPLYLEWAPMGVF 663
Score = 101 (40.6 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF++TE++++ F K G + S ++++KK+ K+ G LSM
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKN-KA-GALLSM 779
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 134
+ V+NLPY + DL+ LF +G L + P +T
Sbjct: 405 LFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLT 440
Score = 42 (19.8 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ ++N+ F + IR F G + +V + +K
Sbjct: 839 ILVRNIPFQADSREIRELFSTFGELKTVRLPKK 871
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 394 (143.8 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 74/150 (49%), Positives = 105/150 (70%)
Query: 27 WNSLFLGTNAIAEAMAETYNATKAEVLT----GSGAATRLAMGETEIVEKTRAFLEENGV 82
WN+LFLG NA+AE +A+ + +K +L GS AA RLA+GET++V + + FLEE GV
Sbjct: 478 WNTLFLGANAVAEILAKQFKTSKERILDTSDGGSSAAVRLALGETQVVIEMKRFLEEEGV 537
Query: 83 QLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQK 142
+LDAF++ + RS +IL KNLP T +++ +F FG +GR+++PP G+T L+E+
Sbjct: 538 RLDAFDEPAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLPPSGVTALIEYCDP 597
Query: 143 NQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
+A+ AF LAY+KFK PLYLEWAPE VF
Sbjct: 598 LEARQAFKKLAYSKFKNAPLYLEWAPEQVF 627
Score = 125 (49.1 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 18/48 (37%), Positives = 38/48 (79%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+TTL+++NLNF + ++++ +HF+ G I +V +A+++DP++P +F S+
Sbjct: 678 NTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSL 725
Score = 87 (35.7 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 28/88 (31%), Positives = 41/88 (46%)
Query: 83 QLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GL 136
Q D+ ++ + I +NL Y T DL+ LFE FG + V +P +T G
Sbjct: 350 QQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGT 409
Query: 137 VEFLQKNQAKAAFNSLAYTKFKEVPLYL 164
V ++ A AFN+L T F L+L
Sbjct: 410 VTYMMPEHALKAFNTLDGTDFHGRLLHL 437
Score = 50 (22.7 bits), Expect = 6.2e-07, Sum P(3) = 6.2e-07
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL--VEF-LQKNQAKAAFNSLAYT 155
I + N+PY T ++ F+P L P + G V F +K+ AK + ++
Sbjct: 252 IKIHNVPYNTKRQEVLKFFKPLKPYSVRL--PSKVHGFCYVGFKTEKDMAKGMLKNKSFI 309
Query: 156 KFKEV 160
K K+V
Sbjct: 310 KGKQV 314
Score = 48 (22.0 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
T + ++N+ F + +R FK G + S+ + +K
Sbjct: 785 TKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKK 819
Score = 41 (19.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 66 ETEIVEKTRAFLEENGVQLDA 86
+ E EK+RA +++GV DA
Sbjct: 172 DDEQQEKSRAARDDSGVDADA 192
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 339 (124.4 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 66/154 (42%), Positives = 96/154 (62%)
Query: 21 AGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TGSGAATRLAMGETEIVEKTRAFLE 78
A +WNSL++ +A+ ++A K ++L T S +A + A+ ET ++++T+ F E
Sbjct: 430 ASSTFSWNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVIQETKNFFE 489
Query: 79 ENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVE 138
E+GV LDAF ARS ++LVKN PY T +L +LF PFG+LGR+L+PP G ++E
Sbjct: 490 EHGVDLDAFKNA--ARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIE 547
Query: 139 FLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
FL + AF+ LAYT+ K LYLE AP VF
Sbjct: 548 FLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVF 581
Score = 110 (43.8 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 227 DT-TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
DT T+Y+KNLNF++ ++ ++ FK S + K DPK PG++LSM
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSM 665
Score = 84 (34.6 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 79 ENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 129
EN V N + + +KR+ L +NL Y DLK+LF PFG L +V +P
Sbjct: 306 ENNVSEQERNIQLISETKRLFL-RNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
Score = 58 (25.5 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269
T + IKNL F +T+ ++ G + SV V +K D + G
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARG 762
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 350 (128.3 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 68/174 (39%), Positives = 104/174 (59%)
Query: 2 GIDEGSS-YXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVLTGS--GA 58
G + GSS + +G H WN+LF+ ++AI ++AE Y T+ ++L +
Sbjct: 455 GAEGGSSSFKAEKEQKQKTTSGSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDL 514
Query: 59 ATRLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFE 118
A R+ + ET ++ +T+ FLE+ GV + RS ++LVKN+P++T +L LF
Sbjct: 515 AVRMTLMETHVINETKKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFS 574
Query: 119 PFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
FG+L RV++ P L+E++ N+AK F +LAY+KF VPLYLEWAPEGVF
Sbjct: 575 KFGELSRVVLSPARTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVF 628
Score = 84 (34.6 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 272
+YIKNLN+ +T +++ FK +V +A K +PK+P + L
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERL 722
Score = 63 (27.2 bits), Expect = 9.7e-35, Sum P(2) = 9.7e-35
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
+ IKNL F ST IR+ F G I SV + +K
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK 829
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 349 (127.9 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 72/151 (47%), Positives = 99/151 (65%)
Query: 25 HTWNSLFLGTNAIAEAMAETYNATKAEVLT---GSGAATRLAMGETEIVEKTRAFLEENG 81
H+WN+LFLG NAIA+ +A+ N K+++LT G A RLA+ ET +V +TR F ENG
Sbjct: 408 HSWNALFLGANAIADTLAQRLNVKKSDLLTSDQGESAGVRLALAETRLVRETRDFFLENG 467
Query: 82 VQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-ITGLVEFL 140
V+LDAF++ E RS ++L KNLP +L+ +FE FGD +VL+P G ++ LV
Sbjct: 468 VKLDAFSKPAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSALVIMG 527
Query: 141 QKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 171
AK AF +LAY++F+ PLYLEWAP V
Sbjct: 528 NPVDAKKAFRALAYSRFRSQPLYLEWAPYDV 558
Score = 97 (39.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 61 RLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRII-----LVKNLPYRTLPTDLKA 115
++ + + E E +EE+G L++ ++ E ++I+ ++NLPY T DL+
Sbjct: 238 KIGIEKIETPEPEHEVIEEHGASLESRDKEEETVREKILETGRLFLRNLPYATKEDDLQF 297
Query: 116 LFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFNSLAYTKFK 158
LF+ +G++ V V TG +VEF+ A AA+++L FK
Sbjct: 298 LFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFK 346
Score = 77 (32.2 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKK-CGPIA-SVTVARKKDPKSPGQFLSM 274
+TL++KNL F++T+ S+ F+K G + S +++K +P P + LSM
Sbjct: 641 STLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSM 689
Score = 54 (24.1 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQ 270
T L ++NL F ++ + F+ G + ++ + PK PGQ
Sbjct: 748 TKLLVRNLPFEASVKEVETLFETFGAVKTIRI-----PKKPGQ 785
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 313 (115.2 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 65/154 (42%), Positives = 96/154 (62%)
Query: 21 AGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL--TGSGAATRLAMGETEIVEKTRAFLE 78
A +WNSL++ +A+ ++AE +KA++L T S AA + A ET ++++T+A+ +
Sbjct: 402 ASSTFSWNSLYMNADAVMSSVAERIGVSKADLLDPTSSDAAVKQAHAETHVIQETKAYFK 461
Query: 79 ENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVE 138
NGV LDAF Q R ILVKN Y T DL+ LFEPFG + R+L+PP G +V
Sbjct: 462 ANGVNLDAFKQ--RERGNLAILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVA 519
Query: 139 FLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
F + ++A+ AF SLAY K + L+LE AP+ +F
Sbjct: 520 FARPDEAQKAFKSLAYRKLGDSILFLEKAPKDLF 553
Score = 110 (43.8 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF++T S+ F+ S + K DPK+PGQ LSM
Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSM 638
Score = 68 (29.0 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269
T + IKNL F +T+ +R F G + SV V +K D + G
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARG 738
Score = 63 (27.2 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 66 ETEIVEK-TRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG 124
E E EK + L + + + R + V+NL Y T ++L+ +F PFG +
Sbjct: 263 EAESPEKPAESDLTKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIE 322
Query: 125 RVLV 128
+ V
Sbjct: 323 EIHV 326
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 304 (112.1 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 68/171 (39%), Positives = 98/171 (57%)
Query: 5 EGSSYXXXXXXXXXXIAGHVHTWNSLFLGTNAIAEAMAETYNATKAEVL---TGSGAATR 61
E SSY + H WN+LF+G NA+A+A+A+ Y+ATK++V T A R
Sbjct: 453 ESSSYKKKKESKDKANSSSSHNWNTLFMGPNAVADAIAQKYSATKSQVFDHETKGSVAVR 512
Query: 62 LAMGETEIVEKTRAFLEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG 121
+A+GET++V++ R FL +NGV LD+F+Q SK + L ++ +LP + + F G
Sbjct: 513 VALGETQLVQEVRRFLLDNGVCLDSFSQGGSGLSKTLTLQLSIKADSLPAEPQGGFTRLG 572
Query: 122 DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
G VL+P +GIT +V L F + + F VPLYLEWAP GVF
Sbjct: 573 SPGVVLIPRWGITAVVCSLPPVPPGKPFVHVCTSTFHHVPLYLEWAPMGVF 623
Score = 101 (40.6 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TL+IKNLNF++TE++++ F K G + S ++++KK+ K+ G LSM
Sbjct: 691 TLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKN-KA-GALLSM 734
Score = 60 (26.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 134
+ V+NLPY + DL+ LF +G + + P +T
Sbjct: 365 LFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLT 400
Score = 37 (18.1 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
DT ++++ F ++ F G + +V + +K
Sbjct: 791 DTKIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKK 826
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 305 (112.4 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 61/158 (38%), Positives = 97/158 (61%)
Query: 22 GHVHTWNSLFLGTNAIAEAMAETYNATKAEVLTGS--GAATRLAMGETEIVEKTRAFLEE 79
G+ + WNS F+ + I E + +Y TK+E+L A RLA+GET ++ +T+ L +
Sbjct: 338 GNTNAWNSFFMRPDTILENLVRSYGVTKSELLDRECEDPAVRLALGETRVIMETKEALAK 397
Query: 80 NGVQLDAFNQV------VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI 133
GV++ + + V+ RSK I+LVK+LP+ + +L +F FG L ++++PP
Sbjct: 398 AGVRVTSLEEFAARKGDVKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKT 457
Query: 134 TGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 171
LV FL+ +A+AA N LAYT++K+ PLYLEWAP +
Sbjct: 458 MALVVFLEAAEARAAMNGLAYTRYKDAPLYLEWAPRDI 495
Score = 59 (25.8 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 230 LYIKNLNFNSTEDSIRRHFK---KCGPIASV 257
L++KNL+F +T++ +++H K G I SV
Sbjct: 537 LHVKNLSFKTTDEGLKKHLTGVVKQGKILSV 567
Score = 48 (22.0 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPI 254
L++KN+ F +T+ +R+ F G I
Sbjct: 636 LHVKNVAFEATKKELRQLFSPFGQI 660
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 284 (105.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 60/158 (37%), Positives = 92/158 (58%)
Query: 22 GHVHTWNSLFLGTNAIAEAMAETYNATKAEVLT--GSGAATRLAMGETEIVEKTRAFLEE 79
G WNSLF+ + I E + Y +K+E+L A RLA+GET+++ +T+ L +
Sbjct: 405 GDTKAWNSLFMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAK 464
Query: 80 NGVQ---LDAF---NQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI 133
GV L+ F N + RSK I+LVKNLP+ + +L +F FG L ++++PP
Sbjct: 465 AGVNVTSLEKFATRNGDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKT 524
Query: 134 TGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 171
L FL+ +A+AA +AY ++K+ PLYLEWAP +
Sbjct: 525 MALAVFLEPAEARAALKGMAYKRYKDAPLYLEWAPGNI 562
Score = 78 (32.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKC---GPIASVTVAR-KKDPK 266
L +KNL+F +T++ +++HF K G I SVT+ + KK+ K
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEK 644
Score = 62 (26.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK 262
T L++KN+ F +T+ +R+ F G I S+ + +K
Sbjct: 702 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKK 736
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 274 (101.5 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 54/149 (36%), Positives = 91/149 (61%)
Query: 26 TWNSLFLGTNAIAEAMAETYNATKAEVLT--GSGAATRLAMGETEIVEKTRAFLEENGVQ 83
+WNSL++ ++A+ E++A TK++++ S +A + A+ E ++ R + E+ GV
Sbjct: 422 SWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVKQALAEAHVIGDVRKYFEDRGVD 481
Query: 84 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 143
L +F++ + R +IILVKN P+ T ++ LF +G L R+L+PP G ++EF
Sbjct: 482 LTSFDK--KERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPAGTIAIIEFRDAP 539
Query: 144 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
A+AAF+ LAY +FK LYLE P+ +F
Sbjct: 540 SARAAFSKLAYKRFKSSILYLEKGPKDLF 568
Score = 83 (34.3 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+++KNLNF +T ++ FK TV K DPK+ G+ LSM
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSM 663
Score = 57 (25.1 bits), Expect = 4.7e-26, Sum P(2) = 4.7e-26
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269
+ IKNL F +T + F G + SV V +K D + G
Sbjct: 719 IIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARG 758
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 254 (94.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 51/151 (33%), Positives = 86/151 (56%)
Query: 26 TWNSLFLGTNAIAEAMAETYNATKAEVLTG--SGAATRLAMGETEIVEKTRAFLEENGVQ 83
+WNSL++ +A+ ++A K++++ S +A + A+ E ++ R + E GV
Sbjct: 457 SWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEAHVIGDVRKYFESKGVD 516
Query: 84 LDAFNQV--VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ 141
L F+Q+ R ++ILVKN P+ T +L +F P+G L R+L+PP G +V+F
Sbjct: 517 LTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQFRD 576
Query: 142 KNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 172
A+AAF L+Y +FK+ +YLE P+ F
Sbjct: 577 TTSARAAFTKLSYKRFKDGIIYLERGPKDCF 607
Score = 84 (34.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+++IKNLNF++T ++ FK V K DPK G+ LSM
Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSM 709
Score = 59 (25.8 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269
+ +KNL F +T + F G + SV V +K D + G
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG 804
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 96 (38.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL------VEFLQKNQAKAAFNSL 152
++++NLP++ P+D+K +F G + V +P TGL V+F K A A
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 153 AYTKFKEVPLYLEWA-PEGVF 172
F + P+ ++WA P+ ++
Sbjct: 393 NGHMFGKRPIAVDWAVPKNIY 413
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268
+ TL+I+NL F+ T++ +++ F G + S+++ K K P
Sbjct: 560 ERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRP 601
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 91 (37.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 269
+ +Y+KN+N TE+ +R+HF +CG I S + + KS G
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG 345
Score = 64 (27.6 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 26/103 (25%), Positives = 49/103 (47%)
Query: 69 IVEKTRAFLEENGVQLDAFNQVVEARSKRI--ILVKNLPYRTLPTDLKALFEPFGDLG-- 124
I +K + L +++ + +AR + + VKNLP L+ +F+ FG++
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 125 RVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 164
+V G + G V+F Q++ A AA +L T + +Y+
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 274 215 0.00087 112 3 11 22 0.40 33
32 0.50 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 604 (64 KB)
Total size of DFA: 159 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.77u 0.08s 16.85t Elapsed: 00:00:15
Total cpu time: 16.78u 0.08s 16.86t Elapsed: 00:00:15
Start: Thu Aug 15 13:14:22 2013 End: Thu Aug 15 13:14:37 2013