RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3343
(274 letters)
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 61.5 bits (148), Expect = 7e-13
Identities = 51/100 (51%), Positives = 66/100 (66%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 151
RSK +IL KNLP TL +++ F FG LGRVL+P GIT +VEFL+ +A+ AF
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH 65
Query: 152 LAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGE 191
LAY+KF VPLYLEWAP GVF A +K + ++ E+ E
Sbjct: 66 LAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAE 105
Score = 31.5 bits (70), Expect = 0.036
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
T + KNL + I+ F + G + V
Sbjct: 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRV 40
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK 158
+ V NLP +++ LFE +G G V + G + + A+ A L +
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR 70
Query: 159 EVPLYLEWAPEG 170
L + +A
Sbjct: 71 GKQLRVRFACHS 82
Score = 36.9 bits (85), Expect = 3e-04
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 221 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
E+ + L++ NL + TE+ +R+ F+K G V
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 38
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 87 FNQVVE--ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ 144
F VV + + + ++ F PFG + + V P V F
Sbjct: 7 FEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHES 66
Query: 145 AKAAFNSLAYTKFKEVPLYLEWA 167
A A S+ T + + W
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWG 89
Score = 45.3 bits (107), Expect = 3e-07
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 215 NVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261
E+ + + T+Y + T+ +R+ F G I + V
Sbjct: 6 RFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 52
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 50.8 bits (120), Expect = 2e-08
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
+EPE L+I L+F +T++S+R HF++ G +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDC 36
Score = 35.4 bits (80), Expect = 0.004
Identities = 18/175 (10%), Positives = 42/175 (24%), Gaps = 40/175 (22%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 151
E R + + L + T L++ FE +G L +V T
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK---------------- 45
Query: 152 LAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKENTAEEDNQQGVPE 211
+ + G E +
Sbjct: 46 ------------------------RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 81
Query: 212 VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266
+ +++ + ++ E +R +F++ G I + + +
Sbjct: 82 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 136
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 47.2 bits (112), Expect = 4e-08
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
+ V +L L F P G + + V IT V F Q A+ A +++
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 153 AYTKFKEVPLYLEWA 167
+ K P+ + W+
Sbjct: 63 NFDVIKGKPVRIMWS 77
Score = 41.8 bits (98), Expect = 4e-06
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268
+LY+ +L+ + TE + F GPI S+ V R +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS 41
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 46.1 bits (109), Expect = 1e-07
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 148
S ++V LP +L ALF G + + TG V+F + ++ A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 149 FNSLAYTKFKEVPLYLEWAPEG 170
L + L + +A G
Sbjct: 61 IKVLNGITVRNKRLKVSYARPG 82
Score = 44.6 bits (105), Expect = 5e-07
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+T L + L + T+ + F+ GPI + + R + +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFV 49
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 46.9 bits (111), Expect = 1e-07
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI---TGLVEFLQKNQAKAAFNSLA 153
RI+ ++NLPY+ ++ +F +G + ++ V T V + AK A + L+
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 67
Query: 154 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEGEGEEEKKE 198
L + + ++ K K +E + + K++
Sbjct: 68 GFNVCNRYLVVLYYNA-------NRAFQKMDTKKKEEQLKLLKEK 105
Score = 40.0 bits (93), Expect = 3e-05
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266
PE + LYI+NL + T + + F K GPI + V + +
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR 46
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 45.7 bits (108), Expect = 3e-07
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 89 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQ 141
QV + ++ ILV+N+P++ +++ LF FG+L V +P + G V+F+
Sbjct: 1 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 60
Query: 142 KNQAKAAFNSLAY-TKFKEVPLYLEWA 167
K AK AFN+L + T L LEWA
Sbjct: 61 KQDAKKAFNALCHSTHLYGRRLVLEWA 87
Score = 41.8 bits (98), Expect = 6e-06
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266
+ + + + ++N+ F + + IR F G + +V + +K
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT 47
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 44.7 bits (105), Expect = 4e-07
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 148
SK ++V LP + ++LF G++ + ITG V ++ A+ A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 149 FNSLAYTKFKEVPLYLEWA 167
N+L + + + + +A
Sbjct: 61 INTLNGLRLQTKTIKVSYA 79
Score = 37.0 bits (85), Expect = 2e-04
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGP 253
T L + L N T++ R F G
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGE 28
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 44.6 bits (105), Expect = 6e-07
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI-TGLVEFLQKNQAKAAFN 150
+ R+ R +L KNL + +LK +FE ++ V +EF + A+
Sbjct: 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLE 71
Query: 151 SLAYTKFKEVPLYLEWA 167
+ + L +
Sbjct: 72 EKQGAEIDGRSVSLYYT 88
Score = 37.7 bits (87), Expect = 2e-04
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
++ TL KNL+FN TED ++ F+ I V+ K + +F
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEF 60
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 43.4 bits (102), Expect = 1e-06
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFNSLA 153
+LV NL + D++ LF FG L + V T V F +K A A
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 154 YTKFKEVPLYLEWAP 168
P+ ++
Sbjct: 63 GVPLDGRPMNIQLVT 77
Score = 38.0 bits (88), Expect = 8e-05
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261
L + NL+F ++ I+ F + G + V
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 34
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 43.5 bits (102), Expect = 1e-06
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAK 146
A +KR++ V L L A F PFGD+ + +P T VEF A
Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 147 AAFNSLAYTKFKEVPLYLEWA 167
AA +++ ++ + + A
Sbjct: 62 AAIDNMNESELFGRTIRVNLA 82
Score = 33.9 bits (77), Expect = 0.003
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256
LY+ L + + F G I
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD 34
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 43.1 bits (101), Expect = 1e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256
P+P+ L + L+ +TE +R F K GPIA
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD 38
Score = 34.3 bits (78), Expect = 0.002
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 150
+ V L T DL+ +F +G + V + + V F + AK A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 151 SLAYTKFKEVPLY 163
+ +
Sbjct: 70 RANGMELDGRRIR 82
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 42.2 bits (99), Expect = 3e-06
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
E DT LY+ NL T+D + F K G I + R K P
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGV 50
Score = 41.1 bits (96), Expect = 9e-06
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 145
E+ + V NLP L +F +G + + + +T V + ++ +A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 146 KAAFNSLAYTKFK--EVPLYLEWA 167
+ A ++L + PL + A
Sbjct: 62 QEAISALNNVIPEGGSQPLSVRLA 85
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 41.9 bits (98), Expect = 4e-06
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256
E D T+Y+ L+ +E + F + GP+ +
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN 38
Score = 40.0 bits (93), Expect = 3e-05
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 145
E + V L + L LF G + +P +T G VEFL + A
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 64
Query: 146 KAAFNSLAYTKFKEVPLYLEWA 167
A + K P+ + A
Sbjct: 65 DYAIKIMDMIKLYGKPIRVNKA 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 41.6 bits (97), Expect = 5e-06
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
D LY+ L T+ + + F + G I + + +
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 50
Score = 35.8 bits (82), Expect = 5e-04
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
+ V LP +L+ LF +G + + +T G + F ++ +A+ A L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 153 AYTKF--KEVPLYLEWA 167
K P+ +++A
Sbjct: 69 NGQKPSGATEPITVKFA 85
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 42.0 bits (98), Expect = 6e-06
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
D +Y+ NL + I F K G I + + ++
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 58
Score = 37.4 bits (86), Expect = 2e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP---PYGITGLVEFLQKNQAKAAFNSLAYT 155
I V NLP D++ +F +G + + + VEF A+ A
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 156 KFKEVPLYLEWAPEG 170
+ L +E+ G
Sbjct: 77 DYDGYRLRVEFPRSG 91
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.0 bits (98), Expect = 6e-06
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 211 EVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 253
+E E ++RE E L+I L+F +TE+S+R ++++ G
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK 46
Score = 30.8 bits (69), Expect = 0.053
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQA 145
E R + + L + T L+ +E +G L +V + V F +
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 146 KAAFNSLAYTKFKEVPLYLEWA 167
AA + + A
Sbjct: 76 DAAMA-ARPHSIDGRVVEPKRA 96
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 41.2 bits (96), Expect = 8e-06
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP---------PYGITGLVEFLQKNQAKAAF 149
+ +KNL + T LK +F G + + G VE+ + QA+ A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 150 NSLAYTKFKEVPLYLEWA 167
L L + +
Sbjct: 61 KQLQGHTVDGHKLEVRIS 78
Score = 40.0 bits (93), Expect = 2e-05
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
L+IKNLNF++TE++++ F K G I S T+++KK+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLS 42
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 40.9 bits (95), Expect = 9e-06
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKCGPI 254
+ TL++ N + T+ +IR + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVV 28
Score = 31.3 bits (70), Expect = 0.020
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSL 152
+ + N P +++ L + + + P ++ K A+ L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 153 AYTKFKEVPLYLEWA 167
K + L + +
Sbjct: 64 NGLKIEGYTLVTKVS 78
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.3 bits (96), Expect = 9e-06
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK 158
ILVKNLP + ++ L + + + V L QA+ A F+
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAF-VTLLNGEQAQNAIQMFHQYSFR 66
Query: 159 EVPLYLEWAP 168
L ++ P
Sbjct: 67 GKDLIVQLQP 76
Score = 30.9 bits (69), Expect = 0.036
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGP 253
+ + +KNL +S + K
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDL 31
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 40.6 bits (94), Expect = 1e-05
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
TT+ +KNL + ++ + ++FK CGPI V VA +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEF 47
Score = 26.0 bits (56), Expect = 1.8
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY 131
+LVKNLP + F+ G + V V
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS 35
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 40.8 bits (95), Expect = 1e-05
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
+EPE L+I L+F +T++S+R HF++ G + V R + K F
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 50
Score = 31.2 bits (70), Expect = 0.023
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQA 145
E R + + L + T L++ FE +G L +V T V + +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 146 KAAFN 150
AA N
Sbjct: 62 DAAMN 66
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 40.7 bits (95), Expect = 1e-05
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSL 152
+ V NL + T + LF GD+ ++++ VE+ + A+ A +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 153 AYTKFKEVPLYLEWAP 168
T+ + + +W
Sbjct: 70 NGTRLDDRIIRTDWDA 85
Score = 39.9 bits (93), Expect = 3e-05
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 221 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
E+ + TLY+ NL+F +TE+ I F K G I + + K K+ F
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF 51
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.8 bits (95), Expect = 1e-05
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
R + + T+ + NL+ ++ E ++ F+ G I+ + +A+ K F +
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 55
Score = 39.6 bits (92), Expect = 3e-05
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 145
A I V NL T TDL+ LF PFG + R+ + T + F ++ A
Sbjct: 4 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDA 63
Query: 146 KAAFNSLAYTKFKEVPLYLEWA 167
A ++ + + L +EWA
Sbjct: 64 ARAIAGVSGFGYDHLILNVEWA 85
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 40.2 bits (94), Expect = 2e-05
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 99 ILVKNL-PYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKF 157
+ + NL +D++A+F +G + V V+++ + A+AA
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG--FAFVQYVNERNARAAVAGEDGRMI 75
Query: 158 KEVPLYLEWAPE 169
L + A E
Sbjct: 76 AGQVLDINLAAE 87
Score = 37.5 bits (87), Expect = 2e-04
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 223 EPEPDTTLYIKNLNFNSTEDS-IRRHFKKCGPIASVTV 259
++ ++I NLN + S + F K G I +V
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV 48
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 39.6 bits (92), Expect = 3e-05
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+ TLY+ NL+ + TE I + F + GP S + + P F+
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF 55
Score = 38.5 bits (89), Expect = 8e-05
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP----PYGITGLVEFLQKNQAKA 147
+ R + V NL + LF G + VEF + A A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 148 AFNSLAYTKFKEVPLYLEWA 167
A ++ K + + WA
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 40.2 bits (93), Expect = 3e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 156
++ V+ L + DL E FG + V++ P+ LVEF + AK A
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVP 75
Query: 157 F--KEVPLYLEWA 167
+ ++
Sbjct: 76 VYIAGQQAFFNYS 88
Score = 34.4 bits (78), Expect = 0.003
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 259
+ ++++ L + E + +K G I V +
Sbjct: 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM 47
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.3 bits (91), Expect = 3e-05
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 266
LY+ N+ F TE+++ F + +T A
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL 40
Score = 27.8 bits (61), Expect = 0.44
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG 132
R + V N+P+ + F LG + P
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGN 37
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 39.6 bits (92), Expect = 4e-05
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 217 EEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264
++ E T++ L + F G + V + ++
Sbjct: 8 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN 55
Score = 32.3 bits (73), Expect = 0.013
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 145
E R R + L R P DL+ F G + V + + VEF +
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73
Query: 146 KAAFNSLAYTKFKEVPLYLEWA 167
L + VP+ ++ +
Sbjct: 74 P-LAIGLTGQRLLGVPIIVQAS 94
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 39.2 bits (91), Expect = 5e-05
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG----LVEFLQKNQAKAAFNSLAY 154
I +KNL L F FG++ V V F + A+ A +
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 155 TKFKEVPLYLEWA 167
+ +++
Sbjct: 71 MLLNDRKVFVGRF 83
Score = 36.9 bits (85), Expect = 3e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 261
++IKNL+ + ++ F G I S V
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 42
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 39.4 bits (91), Expect = 5e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263
E ++ +Y++ LN + T D + FK+CG + +
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQP 44
Score = 34.0 bits (77), Expect = 0.004
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 14/90 (15%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--------------GITGLV 137
E I V+ L DL F+ G + V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 138 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167
+ AKAA F+ L + A
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 93
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 38.5 bits (89), Expect = 7e-05
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFN 150
I+ V ++ +++ F +G++ + + LVE+ QA AA
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 151 SLAYTKFKEVPLYLEWA 167
+L + + ++W
Sbjct: 68 ALNGAEIMGQTIQVDWC 84
Score = 34.3 bits (78), Expect = 0.002
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGP 253
L++ +++ + ED I+ F G
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGE 33
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 37.7 bits (87), Expect = 1e-04
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
+ + LP +K L FG L + T E++ N A L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 153 AYTKFKEVPLYLEWAPEG 170
+ + L ++ A G
Sbjct: 64 NGMQLGDKKLLVQRASVG 81
Score = 28.4 bits (63), Expect = 0.23
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASV 257
L+I L +D ++ GP+ +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAF 31
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 37.7 bits (87), Expect = 2e-04
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 156
+I+ V+NL T ++ F V V F + A A +L
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKV 68
Query: 157 FKEVPLYLEWA 167
P+ + A
Sbjct: 69 LDGSPIEVTLA 79
Score = 33.5 bits (76), Expect = 0.004
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263
+E LY++NL +++E+ I + F P A V + +
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR 44
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.8 bits (87), Expect = 2e-04
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
P T ++ NL ++ TE+SI+ F+ A +P+ F
Sbjct: 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Score = 33.2 bits (75), Expect = 0.009
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 7/77 (9%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFN 150
+ NLPY +K F L EF + +A +
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 151 SLAYTKFKEVPLYLEWA 167
L + ++ A
Sbjct: 76 -LNEESLGNKRIRVDVA 91
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 37.0 bits (85), Expect = 2e-04
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI-------TGLVEFLQKNQAKAAFNS 151
I + NL L F FG + + + F + + AA +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 152 LAYTKFKEVPLYLEWA 167
+ P+ + +A
Sbjct: 61 MNGQYLCNRPITVSYA 76
Score = 36.3 bits (83), Expect = 5e-04
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPI 254
++I NL+ E + F G I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVI 25
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.9 bits (85), Expect = 3e-04
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 221 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
+R + + L + L + +TE ++ +F G + V V + F
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF 52
Score = 27.6 bits (61), Expect = 0.54
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
++V LP++T DLK F FG++ V V T G V F + +
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 36.9 bits (84), Expect = 3e-04
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
E E L+I NLN N + ++ + + V + +
Sbjct: 6 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTN 53
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 37.1 bits (85), Expect = 3e-04
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 99 ILVKNLP-----YRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 153
++ ++LF + + F A A L
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLH 67
Query: 154 YTKFKEVPLYLEWA 167
T+F + L +A
Sbjct: 68 KTEFLGKEMKLYFA 81
Score = 30.9 bits (69), Expect = 0.054
Identities = 4/44 (9%), Positives = 9/44 (20%), Gaps = 5/44 (11%)
Query: 225 EPDTTLYIKNLNF-----NSTEDSIRRHFKKCGPIASVTVARKK 263
+ L N + T F+ + +
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF 46
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 36.9 bits (85), Expect = 4e-04
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264
P + ++NL + T D + + F K G + + K +
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 44
Score = 33.5 bits (76), Expect = 0.007
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG--LVEFLQKNQAKAAFNSLAYTK 156
I+V+NL Y L +F FG + +++ L+++ A+ A SL
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 69
Query: 157 FKEVPLYLEWAPEGVFAEAKEKSKGKEKEKN 187
L F++ + +K+
Sbjct: 70 IYNACCTLRID----FSKLTSLNVKYNNDKS 96
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 36.6 bits (84), Expect = 4e-04
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 156
+ V L T L F+ FG + + +++ + A+AA +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77
Query: 157 F--KEVPLYLEWA 167
+ L +++A
Sbjct: 78 LGGPDRRLRVDFA 90
Score = 35.8 bits (82), Expect = 7e-04
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
+ P T L++ L N++ ++ R F + G I ++
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 47
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 36.1 bits (83), Expect = 5e-04
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPI 254
++I L++ +T++ +R +F + G +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEV 27
Score = 34.6 bits (79), Expect = 0.001
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFN 150
+ + L ++T L+ F FG++ LV +T V F+ +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.6 bits (84), Expect = 5e-04
Identities = 5/54 (9%), Positives = 16/54 (29%)
Query: 214 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 267
+N + + + + ++ E+ +K G + + V
Sbjct: 14 QNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHL 67
Score = 29.2 bits (65), Expect = 0.16
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 101 VKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFNSLAYT 155
++ + E +G++ + V V+F ++ A+ A L
Sbjct: 32 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91
Query: 156 KFKEVPLYLEWAP 168
F P++ E +P
Sbjct: 92 WFNGQPIHAELSP 104
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.3 bits (83), Expect = 6e-04
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 225 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
EP+ LY+KNL+ TE + F + + + +
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 65
Score = 29.4 bits (65), Expect = 0.17
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 150
+++ +KNL R DL +LF F + + +T + F K A A +
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 151 SLAYTKFKEVPLYLEWA 167
+ K L +E+
Sbjct: 79 LVNGYKLYGKILVIEFG 95
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 35.8 bits (82), Expect = 7e-04
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSL 152
+ V+NL Y + DL+ LF +G L + P V F+ A A+ +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 153 AYTKFKEVPLYLEWA 167
F+ L++ +
Sbjct: 71 DGQVFQGRMLHVLPS 85
Score = 35.5 bits (81), Expect = 0.001
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
L+++NL++ S+E+ + + F GP++ + K P F +
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFV 55
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 35.8 bits (82), Expect = 7e-04
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 219 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+ E + P L++ N+ F + +R+ F + G I V + + F++
Sbjct: 4 NSESKSTP-KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF 58
Score = 34.7 bits (79), Expect = 0.002
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG----LVEFLQKNQAKAAF 149
+ + + V N+P+R DL+ +F FG + V + V F A A
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 150 NSLAYTKFKEVPLYLEWA 167
L T + + + A
Sbjct: 69 EKLHGTVVEGRKIEVNNA 86
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 34.9 bits (80), Expect = 9e-04
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
+++ L+ ++ E+ IR +F G + S+ + F
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 43
Score = 33.4 bits (76), Expect = 0.004
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 150
I V L T ++ F FG++ + +P T + F ++ K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 35.4 bits (81), Expect = 9e-04
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 94 RSKRIILVKNLPYRTLPTDLK----ALFEPFGDLGRVLVPPYGIT---GLVEFLQKNQAK 146
R I + NL + +LK A+F FG + +LV V F + + A
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 147 AAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEK 184
A S+ F + P+ +++ AK S K
Sbjct: 61 NALRSMQGFPFYDKPMRIQY--------AKTDSDIIAK 90
Score = 31.2 bits (70), Expect = 0.033
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 226 PDTTLYIKNLNFNSTEDSIRRH----FKKCGPIASVTVARKKDPK 266
P+ T+YI NLN +D +++ F + G I + V+R +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMR 46
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.5 bits (81), Expect = 0.001
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 156
++ L L + E G + +L+PP + ++K A+ +L +
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE 80
Query: 157 FKE-----VPLYLEWA 167
+ + LYL +
Sbjct: 81 VVDDLGQKITLYLNFV 96
Score = 31.6 bits (71), Expect = 0.025
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 217 EEDEEREPEPDTTLYIK--NLNFNSTEDSIRRHFKKCGPIASV 257
E E +L + L + + + +KCG + ++
Sbjct: 8 HEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 50
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 35.4 bits (81), Expect = 0.001
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 221 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 256
++E L+I +L + + + F G + S
Sbjct: 12 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 47
Score = 32.7 bits (74), Expect = 0.010
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL------VEFLQKNQAKAAFNSL 152
+ + +LP DL +F PFG++ V T L V + A+AA S+
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 80
Query: 153 AYTKFKEVPLYLEWAPEGVFAEAKEKSK 180
+ L ++ +K SK
Sbjct: 81 NGFQIGMKRLKVQL------KRSKNDSK 102
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 34.5 bits (78), Expect = 0.001
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK 158
IL++ LP ++ L + V Y T V L QA+AA N+ ++ +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-KYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 59
Query: 159 EVPLYLEWAP 168
E L ++ P
Sbjct: 60 ERELSVQLQP 69
Score = 28.3 bits (62), Expect = 0.22
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVT 258
+ I+ L + T +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFV 29
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 34.6 bits (79), Expect = 0.001
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 153
R + V PT L+ F PFG++ + + P V + + A A L
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELN 60
Query: 154 YTKFKEVPLYLEWA 167
T+ + V L + A
Sbjct: 61 GTQVESVQLKVNIA 74
Score = 32.3 bits (73), Expect = 0.009
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 224 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
P TLY+ + T +R F G I +
Sbjct: 2 PRKGNTLYVYGEDM--TPTLLRGAFSPFGNIIDL 33
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.7 bits (79), Expect = 0.001
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 226 PDTTLYIKNLNFNSTEDSIRRHFKKCGPI 254
P TL++ N+ + +E+ ++ F G +
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGV 37
Score = 27.8 bits (61), Expect = 0.48
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAY 154
+ + N+P DLK LF G + G L++ +A A L
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 155 TKFKE-VPLYLEWA 167
E L + ++
Sbjct: 71 HDLGENHHLRVSFS 84
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 34.7 bits (79), Expect = 0.002
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 97 RIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFN--SLA 153
R++ + + + L L L EPFG + L+ +E A+AA + +
Sbjct: 9 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTT 68
Query: 154 YTKFKEVPLYLEWA 167
P+ + +
Sbjct: 69 PALVFGKPVRVHLS 82
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.1 bits (77), Expect = 0.002
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 151
+ R++ ++ LP T++ AL PFG + +L+ +E + A N
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 152 LAY--TKFKEVPLYLEWA 167
+ + P+Y++++
Sbjct: 64 YSAVTPHLRNQPIYIQYS 81
Score = 29.8 bits (66), Expect = 0.084
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKC 251
+ P L+I+ L TE +
Sbjct: 3 MDGAPSRVLHIRKLPGEVTETEVIALGLPF 32
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 33.9 bits (77), Expect = 0.003
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268
+P P T + ++N+ F + D I F I + + P
Sbjct: 6 KPGP-TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMP 50
Score = 33.1 bits (75), Expect = 0.005
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 148
II V+N+P+ ++ F + + + Y G +V F +++A AA
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 149 FNSLAYTKFKEVPLYLEWA 167
L + L
Sbjct: 68 VIDLNDRPIGSRKVKLVLG 86
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 33.8 bits (77), Expect = 0.003
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
++I L++++T+ ++ +F K G + T+ F
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGF 43
Score = 30.3 bits (68), Expect = 0.042
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 150
+ + L + T DLK F FG++ + IT G V F + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.9 bits (77), Expect = 0.003
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT--------GLVEFLQKNQAKAAFN 150
+ + +P ++ + ++ VE+ A A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 151 SLAYTKFK--EVPLYLEWA 167
L + + + ++WA
Sbjct: 64 KLMPGRIQLWGHQIAVDWA 82
Score = 32.4 bits (73), Expect = 0.011
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPI 254
L+I + + I K
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEG 28
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 34.9 bits (79), Expect = 0.003
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 199 NTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKC 251
+ Q + + EP+ L + + E +R+ F++
Sbjct: 14 GQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERY 66
Score = 33.7 bits (76), Expect = 0.009
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 145
E R ++V +P L+ LFE +G + V + T G V+F + A
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 146 KAAFNSLAYTKFKEVPLYLEWA 167
+ A L L + A
Sbjct: 98 QQAIAGLNGFNILNKRLKVALA 119
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 34.0 bits (77), Expect = 0.003
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 274
+ T++I+NL+F+S E+++ ++ G + V V D +
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFA 55
Score = 27.1 bits (59), Expect = 0.80
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 92 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQA 145
+ + + ++NL + + L + + FGDL V V + +F+ + A
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 63
Query: 146 KAAFNSLAY------TKFKEVPLYLEWA 167
+ + + K L ++ A
Sbjct: 64 QKCLAAASLEAEGGGLKLDGRQLKVDLA 91
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 33.5 bits (76), Expect = 0.004
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 263
LYI NL+ T D +R+ F + V K
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS 37
Score = 33.1 bits (75), Expect = 0.005
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL-AYTKF 157
+ + NL DL+ LF V V++ +N A A +L +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVEL 63
Query: 158 KEVPLYLEWA 167
+ ++++
Sbjct: 64 HGKIMEVDYS 73
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.5 bits (76), Expect = 0.004
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASV 257
+ +++ + TED +R F + G + V
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDV 35
Score = 31.5 bits (71), Expect = 0.020
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRV-LVPPYGITGLVEFLQKNQAKAAFNSLAYTKF 157
+ V +L+ F +GD+ V + P+ V F A++
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGED--LII 65
Query: 158 KEVPLYLEWA 167
K + +++ A
Sbjct: 66 KGISVHISNA 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.6 bits (76), Expect = 0.005
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 212 VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 253
V+ + + +E++P T LYI NL + E + K G
Sbjct: 6 VQAQMAKQQEQDP---TNLYISNLPLSMDEQELENMLKPFGQ 44
Score = 25.1 bits (54), Expect = 5.0
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 77 LEENGVQLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY----- 131
L+ +GVQ Q + + + + NLP +L+ + +PFG + +
Sbjct: 1 LKASGVQAQMAKQ--QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 58
Query: 132 GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 167
G + +A K P
Sbjct: 59 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 94
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.2 bits (75), Expect = 0.007
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKA 147
RS R + V N+PY LK +F G + + T G E+ + A +
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 148 AFNSLAYTKFKEVPLYLEWA 167
A +L +F L ++ A
Sbjct: 66 AMRNLNGREFSGRALRVDNA 85
Score = 29.0 bits (64), Expect = 0.22
Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 223 EPEPD---TTLYIKNLNFNSTEDSIRRHFKKC 251
+P D ++++ N+ + +TE+ ++ F +
Sbjct: 1 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEV 32
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 33.2 bits (75), Expect = 0.009
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ-AKAAFNSLAYT 155
+ +L +T DL LF G++ + G++ F +K + A
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNG 71
Query: 156 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEE 189
+ + W + E ++++ K E +E
Sbjct: 72 NLQLRNKEVTWEV--LEGEVEKEALKKIIEDQQE 103
Score = 29.8 bits (66), Expect = 0.14
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 264
E + +L+ + + + F G I + R
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 48
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.8 bits (74), Expect = 0.010
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 223 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 259
+ ++++ L + +TE+ I F P+
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE 47
Score = 25.9 bits (56), Expect = 2.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 91 VEARSKRIILVKNLPYRTLPTDLKALFEPFG 121
++ + + ++ LPYR D+ F P
Sbjct: 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLN 40
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.4 bits (73), Expect = 0.014
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
++ T +++ L +++T+ S+R++F+ G I V + +
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 54
Score = 24.7 bits (53), Expect = 6.2
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
I V LPY T L+ FE FGD+ +V T G V + A+ A
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 153 AYTKFKEVPLYLEWAPEG 170
+ A G
Sbjct: 73 -NPIIDGRKANVNLAYLG 89
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.6 bits (71), Expect = 0.018
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 93 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAK 146
A + + V L + T L+ +F +G + V+V T G V F + AK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 147 AAFNSLAYTKFKEVPLYLEWA 167
A ++ + ++ A
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA 82
Score = 27.8 bits (61), Expect = 0.47
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 227 DTTLYIKNLNFNSTEDSIRRHFKKC 251
+ L++ L+F++ E S+ + F K
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKY 29
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 32.1 bits (72), Expect = 0.019
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 153
RS +LV LP DLK GD+ V G G+VE+L+K + A L
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLD 71
Query: 154 YTKFKEVPLYLEWA 167
TKF+ +
Sbjct: 72 DTKFRSHEGETSYI 85
Score = 30.5 bits (68), Expect = 0.054
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKC 251
D + + L + + ++ H ++
Sbjct: 10 PTRRSDFRVLVSGLPPSGSWQDLKDHMREA 39
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 31.2 bits (70), Expect = 0.020
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKCGP 253
+++ L+ N+T + ++ +F++ G
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGK 25
Score = 30.9 bits (69), Expect = 0.032
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
I V L T D+K FE FG + ++ T G V F ++ + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 153 AYTKFKEVPLYLEWA 167
+ + + + A
Sbjct: 61 HFHEINNKMVECKKA 75
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 31.4 bits (70), Expect = 0.033
Identities = 5/49 (10%), Positives = 14/49 (28%)
Query: 220 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 268
E +I N+ F+ T+ + + + + +
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQG 49
Score = 28.3 bits (62), Expect = 0.34
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 95 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 148
+K + N+P+ D+ E + G LV+F ++ A+ +
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 66
Query: 149 FNSLAYTKFKEVPLYLEWAPE 169
L K ++
Sbjct: 67 E-RLHRKKLNGREAFVHVVTL 86
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 30.9 bits (69), Expect = 0.036
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 222 REPEPDTTLYIKNLNFNSTEDSIRRHFKKC 251
+ + ++YIK ++T D I+ +
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDK 30
Score = 29.3 bits (65), Expect = 0.12
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 94 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAA 148
R + +K P D+K E G + + + + V F AK
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 63
Query: 149 FNSLAYTKFKEVPLYLEWAPE 169
K+KE L + + +
Sbjct: 64 VE-TPGQKYKETDLLILFKDD 83
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 30.6 bits (68), Expect = 0.046
Identities = 5/46 (10%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 229 TLYIKNLNFNSTEDSIRRHF---KKCGPIASVTVARKKDPKSPGQF 271
+++ L+ + + + K G I V +
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGP 55
Score = 28.2 bits (62), Expect = 0.36
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 96 KRIILVKNLPYRTLPTDLKALFEPFGDLG 124
K ++ V L R ++ E FG G
Sbjct: 8 KNLVFVVGLSQRLADPEVLKRPEYFGKFG 36
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 29.8 bits (66), Expect = 0.069
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 221 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPI 254
+ E P+ L++ NL + E + F +
Sbjct: 2 QTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGF 35
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 29.7 bits (66), Expect = 0.081
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 229 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 271
+++ + ++ E +R +F++ G I + + + F
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 46
Score = 24.7 bits (53), Expect = 4.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 97 RIILVKNLPYRTLPTDLKALFEPF 120
+ I V + T L+ FE +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQY 26
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 29.0 bits (64), Expect = 0.14
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKC 251
LYI+ L +T+ + + +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY 22
Score = 27.0 bits (59), Expect = 0.54
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 99 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 152
+ ++ L T DL L +P+G + T G V+F + A+ A +L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 153 AYTKFK 158
+ +
Sbjct: 61 KASGVQ 66
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 29.6 bits (65), Expect = 0.14
Identities = 5/42 (11%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 217 EEDEEREPEPDTTLYIKNLNFNS-TEDSIRRHFKKCGPIASV 257
++ +++ E +++ NL + ++ ++ + + G I +
Sbjct: 8 DQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY 49
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 28.2 bits (62), Expect = 0.41
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 228 TTLYIKNLNFNS-TEDSIRRHFKKCGPIASVTV 259
+ L + NLN T S+ F G + V +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 35
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 27.4 bits (60), Expect = 0.67
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 228 TTLYIKNLNFNST-EDSIRRHFKKC 251
+ I+NL+ E+ +R F+
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGF 29
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.0 bits (62), Expect = 1.1
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 68 EIVEKTRAFLEENGVQLDAFN 88
+ R+ E G+ + A
Sbjct: 226 AFARRLRSAFAEKGIVVAALE 246
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 254
Score = 28.0 bits (62), Expect = 1.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 68 EIVEKTRAFLEENGVQLDAFNQVV 91
EI R LEE GV++ + +
Sbjct: 231 EITSYIRKVLEEEGVKIVPMKEFI 254
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 26.3 bits (58), Expect = 1.8
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 114 KALFEPFGDLGRVLV----------PPYGITGLVEFLQKNQAKAAFNSLAYTKFKEV 160
K FE FG L ++EF A +NS Y ++
Sbjct: 26 KPAFERFG--ANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKI 80
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
thermophilus [TaxId: 274]}
Length = 250
Score = 27.2 bits (60), Expect = 1.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 68 EIVEKTRAFLEENGVQLDAF 87
E+ R LE+ GV++ AF
Sbjct: 231 EVARAVREALEQAGVEVRAF 250
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 26.4 bits (58), Expect = 2.6
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 68 EIVEKTRAFLEENGVQLDA--FNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR 125
E++E+ R E V L+ +Q+VE + + + +P K D+
Sbjct: 3 EVIEQLREANEPVPVPLELPDEDQLVEIEEQ--LFI------NIPFVFKEFLLTVSDVVY 54
Query: 126 VLVPPYGIT 134
+ P +T
Sbjct: 55 GSLEPVTVT 63
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 25.2 bits (54), Expect = 3.1
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 230 LYIKNLNFNSTEDSIRRHFKKC 251
+ + L + + ++ H ++
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREA 24
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 26.2 bits (56), Expect = 4.7
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 36 AIAEAMAETYNATKAEVLTGSGAATRLAMGETEIVEKTRAFLEENGVQLDAFNQVVEARS 95
AE + + E + + AATR + + L + G+ + +++
Sbjct: 309 QYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTH----LSDYGLDGSSIPALLKKLE 364
Query: 96 KRIILVKNLPYRTLPTDLKALFE 118
+ + + + ++E
Sbjct: 365 EHGMTQLGENHDITLDVSRRIYE 387
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein
13 {Human (Homo sapiens) [TaxId: 9606]}
Length = 197
Score = 25.4 bits (55), Expect = 7.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 163 YLEWAPEGVFAEAKEKSKGKEKEKNEEG 190
YL +G+ EAKEK KG + +
Sbjct: 2 YLNHLIQGLQKEAKEKFKGWVTCSSTDN 29
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 23.6 bits (51), Expect = 9.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 228 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 259
T + I + NS SI K + S+ V
Sbjct: 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRV 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.129 0.357
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 975,648
Number of extensions: 45282
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 176
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.5 bits)