BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3344
(1282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P87|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans
Pre-Mrna Splicing Factor Prp8
Length = 273
Score = 289 bits (739), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 152/282 (53%), Positives = 191/282 (67%), Gaps = 22/282 (7%)
Query: 955 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 1014
TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 1015 IAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFE- 1073
IAG++Y + + + HQ +Q+ D + R FE
Sbjct: 61 IAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQL----PDHELLR-----DFEP 111
Query: 1074 -GNLTTKPINGAIFIFNPRTGQLFLKIIHTSV-WAGQKRLGQLGEKTVVITCSFTPGSCS 1131
G + T+P + +P+ K++ ++ W G EKTV+ITCSFTPGS S
Sbjct: 112 LGWMHTQP--NELPQLSPQDVTTHAKLLTDNISWDG--------EKTVMITCSFTPGSVS 161
Query: 1132 LTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFM 1191
LTAYKLTPSG+EWG+ NTDKGNNPKGY+P+HYE+VQMLLSDRFLG+FMVP+ WNYNF
Sbjct: 162 LTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQ 221
Query: 1192 GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGV 1233
G R P MK+D+ L+NPKE+YHE HRP HF NF + +D G
Sbjct: 222 GQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGT 263
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 111/147 (75%), Positives = 131/147 (89%)
Query: 552 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 611
TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 612 IAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPN 671
IAG++YGVSP DNPQVKEIRCIV+ PQ G+HQ V+LP LP H L++ EPLGW+HTQPN
Sbjct: 61 IAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPN 120
Query: 672 ELPQLSPQDVTSHAKIMADNASWDGVR 698
ELPQLSPQDVT+HAK++ DN SWDG +
Sbjct: 121 ELPQLSPQDVTTHAKLLTDNISWDGEK 147
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDG 736
N ++ G R P MK+D+ L+NPKE+YHE HRP HF NF + +D G
Sbjct: 217 NYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLG 262
>pdb|2P8R|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans
Pre-Mrna Splicing Factor Prp8 Carrying R2303k Mutant
Length = 273
Score = 288 bits (736), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/282 (53%), Positives = 191/282 (67%), Gaps = 22/282 (7%)
Query: 955 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 1014
TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 1015 IAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFE- 1073
IAG++Y + + + HQ +Q+ D + R FE
Sbjct: 61 IAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQL----PDHELLR-----DFEP 111
Query: 1074 -GNLTTKPINGAIFIFNPRTGQLFLKIIHTSV-WAGQKRLGQLGEKTVVITCSFTPGSCS 1131
G + T+P + +P+ K++ ++ W G EKTV+ITCSFTPGS S
Sbjct: 112 LGWMHTQP--NELPQLSPQDVTTHAKLLTDNISWDG--------EKTVMITCSFTPGSVS 161
Query: 1132 LTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFM 1191
LTAYKLTPSG+EWG+ NTDKGNNPKGY+P+HYE+VQMLLSDRFLG+FMVP+ WNYNF
Sbjct: 162 LTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQ 221
Query: 1192 GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGV 1233
G R P MK+D+ L+NPKE+YHE H+P HF NF + +D G
Sbjct: 222 GQRWSPAMKFDVCLSNPKEYYHEDHKPVHFHNFKAFDDPLGT 263
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 111/147 (75%), Positives = 131/147 (89%)
Query: 552 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 611
TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 612 IAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPN 671
IAG++YGVSP DNPQVKEIRCIV+ PQ G+HQ V+LP LP H L++ EPLGW+HTQPN
Sbjct: 61 IAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPN 120
Query: 672 ELPQLSPQDVTSHAKIMADNASWDGVR 698
ELPQLSPQDVT+HAK++ DN SWDG +
Sbjct: 121 ELPQLSPQDVTTHAKLLTDNISWDGEK 147
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDG 736
N ++ G R P MK+D+ L+NPKE+YHE H+P HF NF + +D G
Sbjct: 217 NYNFQGQRWSPAMKFDVCLSNPKEYYHEDHKPVHFHNFKAFDDPLG 262
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment
Length = 565
Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 196/281 (69%), Gaps = 11/281 (3%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 172 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 231
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIE-----KQTKEQSQLTATT--T 532
G+K NVN+++LTQ+EI+DIILG I APS +RQ++AE+E KQ E++ +T T
Sbjct: 232 GRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKT 291
Query: 533 RTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTY 592
+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+DD E Y
Sbjct: 292 KTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVY 351
Query: 593 ILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLP 652
+LPKN+LKKF+ ISD++ Q+A ++YG+S D+P+VKEI+ +V+ PQ G +V + +++P
Sbjct: 352 VLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIP 410
Query: 653 ---GHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMAD 690
P + +E LGWIHTQ EL ++ +V +H+K+ AD
Sbjct: 411 DIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD 451
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 192/365 (52%), Gaps = 36/365 (9%)
Query: 875 QVRELFKYNWGFIYTVSLDFYD--NMSHYVNSMEISAPSAQRQQIAEIE-----KQTKEQ 927
Q+R+L +G Y V++ + + I APS +RQ++AE+E KQ E+
Sbjct: 222 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 281
Query: 928 SQLTATT--TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 985
+ +T T+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+
Sbjct: 282 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 341
Query: 986 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDH 1045
DD E Y+LPKN+LKKF+ ISD++ Q+A ++Y + H +V T + Q H
Sbjct: 342 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYG-MSAKDHPKVKEIKTVVLVPQLGH 400
Query: 1046 QTFIFHSQI--IWFVDDTNVYRVT--IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH 1101
+ S I I + DT + IH E F+ H
Sbjct: 401 VGSVQISNIPDIGDLPDTEGLELLGWIHTQTE---------ELKFMAASEVAT------H 445
Query: 1102 TSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNN-PKGYLP 1160
+ ++A +KR + I+ TPGS SL+AY LT G++WG +N D N +G+ P
Sbjct: 446 SKLFADKKR------DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 499
Query: 1161 SHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAH 1220
+ Q+LLSDR G F++P+ + WNY FMG + Y+ + P EFY+E+HRP H
Sbjct: 500 TFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVH 559
Query: 1221 FLNFS 1225
FL FS
Sbjct: 560 FLQFS 564
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 63/75 (84%)
Query: 346 LSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKII 405
++S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKII
Sbjct: 3 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 62
Query: 406 HTSVWAGQKRLGQLA 420
HTSVWAGQKRL QLA
Sbjct: 63 HTSVWAGQKRLSQLA 77
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 11 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 70
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 71 KRLSQLAK 78
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSK 38
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++ +K
Sbjct: 154 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAK 191
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 1228 EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
E+ +IL D + + +H+WPS +D++WI +E Q++DLIL +YG+
Sbjct: 187 EESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGR 233
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFS 729
N ++ G + Y+ + P EFY+E+HRP HFL FS
Sbjct: 526 NYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFS 564
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 266 bits (680), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 196/281 (69%), Gaps = 11/281 (3%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 1155 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 1214
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIE-----KQTKEQSQLTATT--T 532
G+K NVN+++LTQ+EI+DIILG I APS +RQ++AE+E KQ E++ +T T
Sbjct: 1215 GRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKT 1274
Query: 533 RTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTY 592
+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+DD E Y
Sbjct: 1275 KTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVY 1334
Query: 593 ILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLP 652
+LPKN+LKKF+ ISD++ Q+A ++YG+S D+P+VKEI+ +V+ PQ G +V + +++P
Sbjct: 1335 VLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIP 1393
Query: 653 ---GHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMAD 690
P + +E LGWIHTQ EL ++ +V +H+K+ AD
Sbjct: 1394 DIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD 1434
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 193/367 (52%), Gaps = 36/367 (9%)
Query: 875 QVRELFKYNWGFIYTVSLDFYDN--MSHYVNSMEISAPSAQRQQIAEIE-----KQTKEQ 927
Q+R+L +G Y V++ + + I APS +RQ++AE+E KQ E+
Sbjct: 1205 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 1264
Query: 928 SQLTATT--TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 985
+ +T T+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+
Sbjct: 1265 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 1324
Query: 986 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDH 1045
DD E Y+LPKN+LKKF+ ISD++ Q+A ++Y + H +V T + Q H
Sbjct: 1325 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYG-MSAKDHPKVKEIKTVVLVPQLGH 1383
Query: 1046 QTFIFHSQI--IWFVDDTNVYRVT--IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH 1101
+ S I I + DT + IH E F+ H
Sbjct: 1384 VGSVQISNIPDIGDLPDTEGLELLGWIHTQTE---------ELKFMAASEVA------TH 1428
Query: 1102 TSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNN-PKGYLP 1160
+ ++A +KR + I+ TPGS SL+AY LT G++WG +N D N +G+ P
Sbjct: 1429 SKLFADKKR------DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 1482
Query: 1161 SHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAH 1220
+ Q+LLSDR G F++P+ + WNY FMG + Y+ + P EFY+E+HRP H
Sbjct: 1483 TFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVH 1542
Query: 1221 FLNFSSL 1227
FL FS L
Sbjct: 1543 FLQFSEL 1549
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 104/128 (81%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
++ AYGNWF G KPLIQ ++ IMKANPALYVLRERIRK LQ+Y S EP+L+S NY
Sbjct: 933 NMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSSNYA 992
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAG
Sbjct: 993 ELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAG 1052
Query: 413 QKRLGQLA 420
QKRL QLA
Sbjct: 1053 QKRLSQLA 1060
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 95/108 (87%)
Query: 32 SDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAN 91
SDL WSKQTD GITHFR+GM+H++++LIP ++RYI WE+EF+DSQRVWAEYA KRQEA
Sbjct: 561 SDLSWSKQTDTGITHFRAGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAI 620
Query: 92 AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQY 139
QNRRL E+LE SWDRGIPRI+TLFQ+DRHTLAYD+G RIR EFKQY
Sbjct: 621 QQNRRLAFEELEGSWDRGIPRISTLFQRDRHTLAYDRGHRIRREFKQY 668
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYD+G RIR EFKQY + + +PFWWT+ HDGKLWNLN YRTD+IQALGG+E ILE
Sbjct: 650 RHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIETILE 709
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLFKGT F +WEGLF + F S
Sbjct: 710 HTLFKGTGFNSWEGLFWEKASGFEDS 735
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 994 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 1053
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 1054 KRLSQLAK 1061
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYXXXXXXXXXXXQRASEMAGPPQMPNDFLTFQDTA 198
++DM+H N YG+IRGL+FASFI QYY +RA+++AGP PN+F+ F+
Sbjct: 243 FKDMSHVNKYGLIRGLKFASFIFQYYGLVIDLLLLGQERATDLAGPANNPNEFMQFKSKE 302
Query: 199 TELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNP 245
E AHPIRLY RY+D++++ D+G + E+ L +NP
Sbjct: 303 VEKAHPIRLYTRYLDRIYMLFH--FEEDEGEELTDEY-----LAENP 342
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
+ KWNT+LI L TYFRE++V T+ LLD+LVK E +IQ R+K+GLNSKMP+RFPPAVF
Sbjct: 482 VAAKWNTSLISLFTYFREAIVATEPLLDILVKGETRIQNRVKLGLNSKMPTRFPPAVF 539
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPV 852
+ D ELD L+IE+V KET+HPRKSYKMNSS AD+ + + ++W VS+PSLL ++ F +
Sbjct: 819 ILDGELDVLQIESVTKETVHPRKSYKMNSSAADITMESVHEWEVSKPSLLHETNDSFKGL 878
Query: 853 V 853
+
Sbjct: 879 I 879
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++
Sbjct: 1137 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTN 1169
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 848 KFPPVVFYTPKELGGLGMLSMGHVLIP 874
+FPP VFYTPKELGGLGM+S H+LIP
Sbjct: 533 RFPPAVFYTPKELGGLGMISASHILIP 559
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 1228 EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
E+ +IL D + + +H+WPS +D++WI +E Q++DLIL +YG+
Sbjct: 1170 EESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGR 1216
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSL 731
N ++ G + Y+ + P EFY+E+HRP HFL FS L
Sbjct: 1509 NYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSEL 1549
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
Length = 1531
Score = 266 bits (679), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 196/281 (69%), Gaps = 11/281 (3%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 1122 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 1181
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIE-----KQTKEQSQLTATT--T 532
G+K NVN+++LTQ+EI+DIILG I APS +RQ++AE+E KQ E++ +T T
Sbjct: 1182 GRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKT 1241
Query: 533 RTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTY 592
+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+DD E Y
Sbjct: 1242 KTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVY 1301
Query: 593 ILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLP 652
+LPKN+LKKF+ ISD++ Q+A ++YG+S D+P+VKEI+ +V+ PQ G +V + +++P
Sbjct: 1302 VLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIP 1360
Query: 653 ---GHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMAD 690
P + +E LGWIHTQ EL ++ +V +H+K+ AD
Sbjct: 1361 DIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD 1401
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 193/367 (52%), Gaps = 36/367 (9%)
Query: 875 QVRELFKYNWGFIYTVSLDFYDN--MSHYVNSMEISAPSAQRQQIAEIE-----KQTKEQ 927
Q+R+L +G Y V++ + + I APS +RQ++AE+E KQ E+
Sbjct: 1172 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 1231
Query: 928 SQLTATT--TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 985
+ +T T+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+
Sbjct: 1232 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 1291
Query: 986 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDH 1045
DD E Y+LPKN+LKKF+ ISD++ Q+A ++Y + H +V T + Q H
Sbjct: 1292 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYG-MSAKDHPKVKEIKTVVLVPQLGH 1350
Query: 1046 QTFIFHSQI--IWFVDDTNVYRVT--IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH 1101
+ S I I + DT + IH E F+ H
Sbjct: 1351 VGSVQISNIPDIGDLPDTEGLELLGWIHTQTE---------ELKFMAASEVA------TH 1395
Query: 1102 TSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNN-PKGYLP 1160
+ ++A +KR + I+ TPGS SL+AY LT G++WG +N D N +G+ P
Sbjct: 1396 SKLFADKKR------DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 1449
Query: 1161 SHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAH 1220
+ Q+LLSDR G F++P+ + WNY FMG + Y+ + P EFY+E+HRP H
Sbjct: 1450 TFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVH 1509
Query: 1221 FLNFSSL 1227
FL FS L
Sbjct: 1510 FLQFSEL 1516
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 104/127 (81%)
Query: 294 LFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGE 353
++ AYGNWF G KPLIQ ++ IMKANPALYVLRERIRK LQ+Y S EP+L+S NY E
Sbjct: 901 MYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSSNYAE 960
Query: 354 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 413
LF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 961 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 1020
Query: 414 KRLGQLA 420
KRL QLA
Sbjct: 1021 KRLSQLA 1027
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 95/108 (87%)
Query: 32 SDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAN 91
SDL WSKQTD GITHFR+GM+H++++LIP ++RYI WE+EF+DSQRVWAEYA KRQEA
Sbjct: 528 SDLSWSKQTDTGITHFRAGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAI 587
Query: 92 AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQY 139
QNRRL E+LE SWDRGIPRI+TLFQ+DRHTLAYD+G RIR EFKQY
Sbjct: 588 QQNRRLAFEELEGSWDRGIPRISTLFQRDRHTLAYDRGHRIRREFKQY 635
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYD+G RIR EFKQY + + +PFWWT+ HDGKLWNLN YRTD+IQALGG+E ILE
Sbjct: 617 RHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIETILE 676
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLFKGT F +WEGLF + F S
Sbjct: 677 HTLFKGTGFNSWEGLFWEKASGFEDS 702
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 961 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 1020
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 1021 KRLSQLAK 1028
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYXXXXXXXXXXXQRASEMAGPPQMPNDFLTFQDTA 198
++DM+H N YG+IRGL+FASFI QYY +RA+++AGP PN+F+ F+
Sbjct: 210 FKDMSHVNKYGLIRGLKFASFIFQYYGLVIDLLLLGQERATDLAGPANNPNEFMQFKSKE 269
Query: 199 TELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNP 245
E AHPIRLY RY+D++++ D+G + E+ L +NP
Sbjct: 270 VEKAHPIRLYTRYLDRIYMLFH--FEEDEGEELTDEY-----LAENP 309
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
+ KWNT+LI L TYFRE++V T+ LLD+LVK E +IQ R+K+GLNSKMP+RFPPAVF
Sbjct: 449 VAAKWNTSLISLFTYFREAIVATEPLLDILVKGETRIQNRVKLGLNSKMPTRFPPAVF 506
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPV 852
+ D ELD L+IE+V KET+HPRKSYKMNSS AD+ + + ++W VS+PSLL ++ F +
Sbjct: 786 ILDGELDVLQIESVTKETVHPRKSYKMNSSAADITMESVHEWEVSKPSLLHETNDSFKGL 845
Query: 853 V 853
+
Sbjct: 846 I 846
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFN+YDDWL +SSYTAFSRL L+LRAL ++
Sbjct: 1104 MVLFNIYDDWLDRLSSYTAFSRLTLLLRALKTN 1136
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 848 KFPPVVFYTPKELGGLGMLSMGHVLIP 874
+FPP VFYTPKELGGLGM+S H+LIP
Sbjct: 500 RFPPAVFYTPKELGGLGMISASHILIP 526
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSL 731
N ++ G + Y+ + P EFY+E+HRP HFL FS L
Sbjct: 1476 NYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSEL 1516
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016
Length = 257
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 4/104 (3%)
Query: 343 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL 402
EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL
Sbjct: 1 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL 60
Query: 403 KIIHTSVWAGQKRLGQLA----FSRLILILRALHVNTERTKVIL 442
KIIHTSVWAGQKRLGQLA + ++R+L V + ++I+
Sbjct: 61 KIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 104
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/85 (91%), Positives = 83/85 (97%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADY
Sbjct: 173 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADY 232
Query: 480 GKKNNVNVASLTQSEIRDIILGMEI 504
GKKNNVNVASLTQSEIRDIILGMEI
Sbjct: 233 GKKNNVNVASLTQSEIRDIILGMEI 257
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 12 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 71
Query: 1109 KRLGQLGE 1116
KRLGQL +
Sbjct: 72 KRLGQLAK 79
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 43/46 (93%)
Query: 1229 DGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
D VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADYGK
Sbjct: 189 DRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGK 234
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/33 (93%), Positives = 32/33 (96%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFNLYDDWLKTISSYTAFSRLILILRALH +
Sbjct: 155 MVLFNLYDDWLKTISSYTAFSRLILILRALHVN 187
>pdb|2OG4|A Chain A, Structure Of An Expanded Jab1-mpn-like Domain Of Splicing
Factor Prp8p From Yeast
Length = 254
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 141/275 (51%), Gaps = 27/275 (9%)
Query: 956 ATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQI 1015
SK EWR AI+ T L+LR +IYVS+DD E Y+LPKN+LKKF+ ISD++ Q+
Sbjct: 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQV 60
Query: 1016 AGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQI--IWFVDDTNVYRVT--IHKT 1071
A ++Y + H +V T + Q H + S I I + DT + IH
Sbjct: 61 AAFIYG-MSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQ 119
Query: 1072 FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCS 1131
E F+ H+ ++A +KR + I+ TPGS S
Sbjct: 120 TEE---------LKFMAASEVAT------HSKLFADKKR------DCIDISIFSTPGSVS 158
Query: 1132 LTAYKLTPSGFEWGRQNTDKGNN-PKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNF 1190
L+AY LT G++WG +N D N +G+ P+ Q+LLSDR G F++P+ + WNY F
Sbjct: 159 LSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTF 218
Query: 1191 MGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFS 1225
MG + Y+ + P EFY+E+HRP HFL FS
Sbjct: 219 MGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFS 253
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 4/141 (2%)
Query: 553 ATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQI 612
SK EWR AI+ T L+LR +IYVS+DD E Y+LPKN+LKKF+ ISD++ Q+
Sbjct: 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQV 60
Query: 613 AGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLP---GHPYLKEMEPLGWIHTQ 669
A ++YG+S D+P+VKEI+ +V+ PQ G +V + +++P P + +E LGWIHTQ
Sbjct: 61 AAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQ 119
Query: 670 PNELPQLSPQDVTSHAKIMAD 690
EL ++ +V +H+K+ AD
Sbjct: 120 TEELKFMAASEVATHSKLFAD 140
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFS 729
N ++ G + Y+ + P EFY+E+HRP HFL FS
Sbjct: 215 NYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFS 253
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv
pdb|3ENB|B Chain B, Crystal Structure Of Prp8 Core Domain Iv
Length = 222
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 81/95 (85%), Gaps = 4/95 (4%)
Query: 352 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA 411
GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA
Sbjct: 1 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA 60
Query: 412 GQKRLGQLA----FSRLILILRALHVNTERTKVIL 442
GQKRLGQLA + ++R+L V + ++I+
Sbjct: 61 GQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 95
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 3 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 62
Query: 1109 KRLGQLGE 1116
KRLGQL +
Sbjct: 63 KRLGQLAK 70
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 57/59 (96%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 478
AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILAD
Sbjct: 164 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1229 DGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 1271
D VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILAD
Sbjct: 180 DRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/33 (93%), Positives = 32/33 (96%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFNLYDDWLKTISSYTAFSRLILILRALH +
Sbjct: 146 MVLFNLYDDWLKTISSYTAFSRLILILRALHVN 178
>pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8
pdb|3E66|B Chain B, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8
Length = 282
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 71/88 (80%)
Query: 333 ALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFI 392
LQ+Y S EP+L+S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF
Sbjct: 9 GLQIYQSSVQEPFLNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFT 68
Query: 393 FNPRTGQLFLKIIHTSVWAGQKRLGQLA 420
NP+TG LFLKIIHTSVWAGQKRL QLA
Sbjct: 69 LNPKTGHLFLKIIHTSVWAGQKRLSQLA 96
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 70/92 (76%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 191 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 250
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQR 511
G+K NVN+++LTQ+EI+DIILG I APS +R
Sbjct: 251 GRKYNVNISALTQTEIKDIILGQNIKAPSVKR 282
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 30 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 89
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 90 KRLSQLAK 97
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++
Sbjct: 173 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTN 205
>pdb|3E9P|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1827-2092
pdb|3E9P|B Chain B, Crystal Structure Of Yeast Prp8, Residues 1827-2092
Length = 255
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 65/77 (84%)
Query: 344 PYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK 403
P+L+S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK
Sbjct: 1 PFLNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLK 60
Query: 404 IIHTSVWAGQKRLGQLA 420
IIHTSVWAGQKRL QLA
Sbjct: 61 IIHTSVWAGQKRLSQLA 77
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 11 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 70
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 71 KRLSQLAK 78
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 172 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 231
Query: 480 GKKNNVNVASLTQSEIRDIILG 501
G+K NVN+++LTQ+EI+DIILG
Sbjct: 232 GRKYNVNISALTQTEIKDIILG 253
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++
Sbjct: 154 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTN 186
>pdb|3SBT|A Chain A, Crystal Structure Of A Aar2-prp8 Complex
Length = 260
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 63/75 (84%)
Query: 346 LSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKII 405
++S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKII
Sbjct: 3 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 62
Query: 406 HTSVWAGQKRLGQLA 420
HTSVWAGQKRL QLA
Sbjct: 63 HTSVWAGQKRLSQLA 77
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 11 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 70
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 71 KRLSQLAK 78
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 68/89 (76%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 172 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 231
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPS 508
G+K NVN+++LTQ+EI+DIILG I APS
Sbjct: 232 GRKYNVNISALTQTEIKDIILGQNIKAPS 260
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++
Sbjct: 154 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTN 186
>pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092
Length = 258
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 62/74 (83%)
Query: 347 SSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH 406
+S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIH
Sbjct: 7 NSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIH 66
Query: 407 TSVWAGQKRLGQLA 420
TSVWAGQKRL QLA
Sbjct: 67 TSVWAGQKRLSQLA 80
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 14 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 73
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 74 KRLSQLAK 81
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 62/82 (75%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K IL D + + +H+WPS +D++WI +E Q +DLIL +Y
Sbjct: 175 AFSRLTLLLRALKTNEESAKXILLSDPTITIKSYHLWPSFTDEQWITIESQXRDLILTEY 234
Query: 480 GKKNNVNVASLTQSEIRDIILG 501
G+K NVN+++LTQ+EI+DIILG
Sbjct: 235 GRKYNVNISALTQTEIKDIILG 256
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 2 VLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
VLFN+YDDWL ISSYTAFSRL L+LRAL ++
Sbjct: 158 VLFNIYDDWLDRISSYTAFSRLTLLLRALKTN 189
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 1228 EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
E+ IL D + + +H+WPS +D++WI +E Q +DLIL +YG+
Sbjct: 190 EESAKXILLSDPTITIKSYHLWPSFTDEQWITIESQXRDLILTEYGR 236
>pdb|3LRU|A Chain A, Hprp8 Non-Native Subdomain
pdb|3LRU|B Chain B, Hprp8 Non-Native Subdomain
Length = 160
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 57/59 (96%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 478
AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILAD
Sbjct: 102 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 160
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 1229 DGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 1271
D VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILAD
Sbjct: 118 DRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 160
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALH 31
MVLFNLYDDWLKTISSYTAFSRLILILRALH
Sbjct: 84 MVLFNLYDDWLKTISSYTAFSRLILILRALH 114
>pdb|3RH3|A Chain A, Crystal Structure Of An Uncharacterized Duf3829-Like
Protein (Bt_1908) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution
pdb|3RH3|B Chain B, Crystal Structure Of An Uncharacterized Duf3829-Like
Protein (Bt_1908) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution
Length = 264
Score = 33.9 bits (76), Expect = 0.61, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 844 DSKGKFPPVVFYTPKELGGLG---MLSMGHVLIPQVRELFKYNWGFIYTVSLDFYDNMSH 900
+ GK P V P E+ +L G P+VR+ K N+ ++ V FYDN +
Sbjct: 46 EQTGKVPEVDPIAPPEIAARDTAELLDPGDYFNPEVRQNLKQNYAGLFNVRTQFYDNFNK 105
Query: 901 YVNSMEISAPSAQRQQIAEIEKQTKEQSQ 929
++ + + Q + E K + E S+
Sbjct: 106 FLAYKKSKDTAKTAQLLDENYKLSVELSE 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,222,245
Number of Sequences: 62578
Number of extensions: 1657022
Number of successful extensions: 4269
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4172
Number of HSP's gapped (non-prelim): 84
length of query: 1282
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1172
effective length of database: 8,089,757
effective search space: 9481195204
effective search space used: 9481195204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)