BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3344
(1282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P2Q9|PRP8_HUMAN Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1
SV=2
Length = 2335
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/277 (91%), Positives = 261/277 (94%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADY
Sbjct: 1932 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADY 1991
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG 539
GKKNNVNVASLTQSEIRDIILGMEISAPS QRQQIAEIEKQTKEQSQLTAT TRTVNKHG
Sbjct: 1992 GKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHG 2051
Query: 540 DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVL 599
DEIITSTTSNYET TF SKTEWRVRAISA NLHLRTNHIYVSSDDIKETGYTYILPKNVL
Sbjct: 2052 DEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVL 2111
Query: 600 KKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKE 659
KKF+ ISDLRAQIAGYLYGVSP DNPQVKEIRCIVM PQWGTHQTVHLP LP H YLKE
Sbjct: 2112 KKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKE 2171
Query: 660 MEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDG 696
MEPLGWIHTQPNE PQLSPQDVT+HAKIMADN SWDG
Sbjct: 2172 MEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDG 2208
Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/329 (68%), Positives = 249/329 (75%), Gaps = 18/329 (5%)
Query: 904 SMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTE 963
MEISAPS QRQQIAEIEKQTKEQSQLTAT TRTVNKHGDEIITSTTSNYET TF SKTE
Sbjct: 2013 GMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTE 2072
Query: 964 WRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHL 1023
WRVRAISA NLHLRTNHIYVSSDDIKETGYTYILPKNVLKKF+ ISDLRAQIAGYLY
Sbjct: 2073 WRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVS 2132
Query: 1024 VCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPING 1083
+ + + HQT Q+ + Y + G + T+P
Sbjct: 2133 PPDNPQVKEIRCIVMVPQWGTHQTVHLPGQL-----PQHEYLKEMEPL--GWIHTQPNES 2185
Query: 1084 AIFIFNPRTGQLFLKII-HTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGF 1142
+P+ KI+ W G EKT++ITCSFTPGSC+LTAYKLTPSG+
Sbjct: 2186 P--QLSPQDVTTHAKIMADNPSWDG--------EKTIIITCSFTPGSCTLTAYKLTPSGY 2235
Query: 1143 EWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYD 1202
EWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKY+
Sbjct: 2236 EWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYE 2295
Query: 1203 LQLANPKEFYHEIHRPAHFLNFSSLEDGD 1231
LQLANPKEFYHE+HRP+HFLNF+ L++G+
Sbjct: 2296 LQLANPKEFYHEVHRPSHFLNFALLQEGE 2324
Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 127/154 (82%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
L AYGNWFPGSKPLIQQA+AKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYG
Sbjct: 1710 NLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYG 1769
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG
Sbjct: 1770 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 1829
Query: 413 QKRLGQLA----FSRLILILRALHVNTERTKVIL 442
QKRLGQLA + ++R+L V + ++I+
Sbjct: 1830 QKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 1863
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 105/110 (95%), Positives = 108/110 (98%)
Query: 31 HSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA 90
SDLRWSKQTDVGITHFRSGMSH+EDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA
Sbjct: 1337 QSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA 1396
Query: 91 NAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQ 140
AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RT+FKQYQ
Sbjct: 1397 IAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ 1446
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/86 (88%), Positives = 79/86 (91%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYDKGWR+RT+FKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE
Sbjct: 1427 RHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 1486
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLFKGTYFPTWEGLF + F S
Sbjct: 1487 HTLFKGTYFPTWEGLFWEKASGFEES 1512
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 79/84 (94%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTA 198
Y+DMNHTNSYGIIRGLQFASFIVQYYGLV+DLLVLGL RASEMAGPPQMPNDFL+FQD A
Sbjct: 1019 YKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIA 1078
Query: 199 TELAHPIRLYCRYVDKVHLFLRHT 222
TE AHPIRL+CRY+D++H+F R T
Sbjct: 1079 TEAAHPIRLFCRYIDRIHIFFRFT 1102
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 1771 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1830
Query: 1109 KRLGQLGE 1116
KRLGQL +
Sbjct: 1831 KRLGQLAK 1838
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/58 (96%), Positives = 57/58 (98%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
IVNKWNTALIGLMTYFRE+VVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP VF
Sbjct: 1259 IVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF 1316
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/54 (96%), Positives = 54/54 (100%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSK 846
VFDQELDALEIETVQKETIHPRKSYKMNSSCAD+LLFA+YKWNVSRPSLLADSK
Sbjct: 1596 VFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSK 1649
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 43/46 (93%)
Query: 1229 DGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
D VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADYGK
Sbjct: 1948 DRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGK 1993
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALH 31
MVLFNLYDDWLKTISSYTAFSRLILILRALH
Sbjct: 1914 MVLFNLYDDWLKTISSYTAFSRLILILRALH 1944
>sp|Q99PV0|PRP8_MOUSE Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1
SV=2
Length = 2335
Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/277 (91%), Positives = 262/277 (94%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRLILILRALHVN +R KVILKPDK+T+TEPHHIWP+L+D+EWIKVEVQLKDLILADY
Sbjct: 1932 AFSRLILILRALHVNNDRAKVILKPDKTTVTEPHHIWPTLTDEEWIKVEVQLKDLILADY 1991
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG 539
GKKNNVNVASLTQSEIRDIILGMEISAPS QRQQIAEIEKQTKEQSQLTAT TRTVNKHG
Sbjct: 1992 GKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHG 2051
Query: 540 DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVL 599
DEIITSTTSNYET TF SKTEWRVRAISA NLHLRTNHIYVSSDDIKETGYTYILPKNVL
Sbjct: 2052 DEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVL 2111
Query: 600 KKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKE 659
KKF+ ISDLRAQIAGYLYGVSP DNPQVKEIRCIVM PQWGTHQTVHLP+ LP H YLKE
Sbjct: 2112 KKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPSQLPQHEYLKE 2171
Query: 660 MEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDG 696
MEPLGWIHTQPNE PQLSPQDVT+HAKIMADN SWDG
Sbjct: 2172 MEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDG 2208
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/328 (68%), Positives = 247/328 (75%), Gaps = 16/328 (4%)
Query: 904 SMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTE 963
MEISAPS QRQQIAEIEKQTKEQSQLTAT TRTVNKHGDEIITSTTSNYET TF SKTE
Sbjct: 2013 GMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTE 2072
Query: 964 WRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHL 1023
WRVRAISA NLHLRTNHIYVSSDDIKETGYTYILPKNVLKKF+ ISDLRAQIAGYLY
Sbjct: 2073 WRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVS 2132
Query: 1024 VCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPING 1083
+ + + HQT SQ+ E +P+ G
Sbjct: 2133 PPDNPQVKEIRCIVMVPQWGTHQTVHLPSQL---------------PQHEYLKEMEPL-G 2176
Query: 1084 AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFE 1143
I + QL + + T GEKT++ITCSFTPGSC+LTAYKLTPSG+E
Sbjct: 2177 WIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYE 2236
Query: 1144 WGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDL 1203
WGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKY+L
Sbjct: 2237 WGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYEL 2296
Query: 1204 QLANPKEFYHEIHRPAHFLNFSSLEDGD 1231
QLANPKEFYHE+HRP+HFLNF+ L++G+
Sbjct: 2297 QLANPKEFYHEVHRPSHFLNFALLQEGE 2324
Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 127/154 (82%), Positives = 136/154 (88%), Gaps = 4/154 (2%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
L AYGNWFPGSKPLIQQA+AKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYG
Sbjct: 1710 NLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYG 1769
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG
Sbjct: 1770 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 1829
Query: 413 QKRLGQLA----FSRLILILRALHVNTERTKVIL 442
QKRLGQLA + ++R+L V + ++I+
Sbjct: 1830 QKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 1863
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 105/110 (95%), Positives = 108/110 (98%)
Query: 31 HSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA 90
SDLRWSKQTDVGITHFRSGMSH+EDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA
Sbjct: 1337 QSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA 1396
Query: 91 NAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQ 140
AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RT+FKQYQ
Sbjct: 1397 IAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ 1446
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/86 (88%), Positives = 79/86 (91%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYDKGWR+RT+FKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE
Sbjct: 1427 RHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 1486
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLFKGTYFPTWEGLF + F S
Sbjct: 1487 HTLFKGTYFPTWEGLFWEKASGFEES 1512
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 79/84 (94%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTA 198
Y+DMNHTNSYGIIRGLQFASFIVQYYGLV+DLLVLGL RASEMAGPPQMPNDFL+FQD A
Sbjct: 1019 YKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIA 1078
Query: 199 TELAHPIRLYCRYVDKVHLFLRHT 222
TE AHPIRL+CRY+D++H+F R T
Sbjct: 1079 TEAAHPIRLFCRYIDRIHIFFRFT 1102
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 1771 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1830
Query: 1109 KRLGQLGE 1116
KRLGQL +
Sbjct: 1831 KRLGQLAK 1838
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/58 (96%), Positives = 57/58 (98%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
IVNKWNTALIGLMTYFRE+VVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP VF
Sbjct: 1259 IVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF 1316
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/54 (96%), Positives = 54/54 (100%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSK 846
VFDQELDALEIETVQKETIHPRKSYKMNSSCAD+LLFA+YKWNVSRPSLLADSK
Sbjct: 1596 VFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSK 1649
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 43/46 (93%)
Query: 1229 DGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
D VILKPDK+T+TEPHHIWP+L+D+EWIKVEVQLKDLILADYGK
Sbjct: 1948 DRAKVILKPDKTTVTEPHHIWPTLTDEEWIKVEVQLKDLILADYGK 1993
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALH 31
MVLFNLYDDWLKTISSYTAFSRLILILRALH
Sbjct: 1914 MVLFNLYDDWLKTISSYTAFSRLILILRALH 1944
>sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8
PE=1 SV=1
Length = 2329
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/277 (80%), Positives = 258/277 (93%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSR++LI+R +H+N ++TKVILKPDK+TITEPHHIWP+LSDD+WIKVE+ LKD+ILADY
Sbjct: 1925 AFSRVVLIMRGMHINPDKTKVILKPDKTTITEPHHIWPTLSDDDWIKVELALKDMILADY 1984
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG 539
GKKNNVNVASLTQSE+RDIILGMEISAPS QRQQIA+IEKQTKEQSQ+TATTTRTVNKHG
Sbjct: 1985 GKKNNVNVASLTQSEVRDIILGMEISAPSQQRQQIADIEKQTKEQSQVTATTTRTVNKHG 2044
Query: 540 DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVL 599
DEIIT+TTSNYETA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+L
Sbjct: 2045 DEIITATTSNYETASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNIL 2104
Query: 600 KKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKE 659
KKF+TISDLR QIAG++YGVSP DNPQVKEIRCIV+ PQ G+HQ V+LP LP H L++
Sbjct: 2105 KKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRD 2164
Query: 660 MEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDG 696
EPLGW+HTQPNELPQLSPQDVT+HAK++ DN SWDG
Sbjct: 2165 FEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDG 2201
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/332 (59%), Positives = 240/332 (72%), Gaps = 22/332 (6%)
Query: 904 SMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTE 963
MEISAPS QRQQIA+IEKQTKEQSQ+TATTTRTVNKHGDEIIT+TTSNYETA+F S+TE
Sbjct: 2006 GMEISAPSQQRQQIADIEKQTKEQSQVTATTTRTVNKHGDEIITATTSNYETASFASRTE 2065
Query: 964 WRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHL 1023
WRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR QIAG++Y
Sbjct: 2066 WRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVS 2125
Query: 1024 VCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFE--GNLTTKPI 1081
+ + + HQ +Q+ D + R FE G + T+P
Sbjct: 2126 PPDNPQVKEIRCIVLVPQTGSHQQVNLPTQL----PDHELLR-----DFEPLGWMHTQP- 2175
Query: 1082 NGAIFIFNPRTGQLFLKIIHTSV-WAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPS 1140
+ +P+ K++ ++ W GEKTV+ITCSFTPGS SLTAYKLTPS
Sbjct: 2176 -NELPQLSPQDVTTHAKLLTDNISWD--------GEKTVMITCSFTPGSVSLTAYKLTPS 2226
Query: 1141 GFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMK 1200
G+EWG+ NTDKGNNPKGY+P+HYE+VQMLLSDRFLG+FMVP+ WNYNF G R P MK
Sbjct: 2227 GYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMK 2286
Query: 1201 YDLQLANPKEFYHEIHRPAHFLNFSSLEDGDG 1232
+D+ L+NPKE+YHE HRP HF NF + +D G
Sbjct: 2287 FDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLG 2318
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/154 (78%), Positives = 134/154 (87%), Gaps = 4/154 (2%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
L+ AYGNWFPG KPLI+QA+AKI+KANPA YVLRERIRK LQLYSSEPTEPYL+SQNYG
Sbjct: 1703 NLYSAYGNWFPGMKPLIRQAMAKIIKANPAFYVLRERIRKGLQLYSSEPTEPYLTSQNYG 1762
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG
Sbjct: 1763 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 1822
Query: 413 QKRLGQLA----FSRLILILRALHVNTERTKVIL 442
QKRL QLA + ++R+L V + ++I+
Sbjct: 1823 QKRLSQLAKWKTAEEVAALIRSLPVEEQPRQIIV 1856
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/111 (88%), Positives = 105/111 (94%), Gaps = 1/111 (0%)
Query: 31 HSDLRWSKQTDVG-ITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 89
SDLRW +QT+ G +THFRSGMSHDEDQLIPNLYRYIQPWE+EF+DS RVWAEYALKRQE
Sbjct: 1329 QSDLRWMQQTEAGGVTHFRSGMSHDEDQLIPNLYRYIQPWEAEFVDSVRVWAEYALKRQE 1388
Query: 90 ANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQ 140
ANAQNRRLTLEDL+DSWDRGIPRINTLFQKDRHTLAYDKGWR+RTEFK YQ
Sbjct: 1389 ANAQNRRLTLEDLDDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKAYQ 1439
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/86 (86%), Positives = 78/86 (90%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYDKGWR+RTEFK YQ+LKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE
Sbjct: 1420 RHTLAYDKGWRVRTEFKAYQILKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 1479
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLF+GTYFPTWEGLF + F S
Sbjct: 1480 HTLFRGTYFPTWEGLFWERASGFEES 1505
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/68 (91%), Positives = 65/68 (95%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 1764 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1823
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 1824 KRLSQLAK 1831
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 76/84 (90%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTA 198
Y+DMNHTNS+GIIRGLQFASFIVQ+YGLVLDLLVLGL+RASE+AGPPQ PN+FL FQD A
Sbjct: 1011 YKDMNHTNSFGIIRGLQFASFIVQFYGLVLDLLVLGLRRASEIAGPPQCPNEFLQFQDVA 1070
Query: 199 TELAHPIRLYCRYVDKVHLFLRHT 222
TE+ HPIRLYCRY+D+V + R +
Sbjct: 1071 TEIGHPIRLYCRYIDRVWIMFRFS 1094
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/58 (96%), Positives = 57/58 (98%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
IVNKWNTALIGLMTYFRE+VVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP VF
Sbjct: 1251 IVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF 1308
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/54 (94%), Positives = 53/54 (98%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSK 846
VFDQELDALEI+TVQKETIHPRKSYKMNSSCADVLLFA YKWNVSRPSL+ADSK
Sbjct: 1589 VFDQELDALEIQTVQKETIHPRKSYKMNSSCADVLLFAQYKWNVSRPSLMADSK 1642
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 42/46 (91%)
Query: 1229 DGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
D VILKPDK+TITEPHHIWP+LSDD+WIKVE+ LKD+ILADYGK
Sbjct: 1941 DKTKVILKPDKTTITEPHHIWPTLSDDDWIKVELALKDMILADYGK 1986
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 30/31 (96%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALH 31
MVLFNLYDDWLKTISSYTAFSR++LI+R +H
Sbjct: 1907 MVLFNLYDDWLKTISSYTAFSRVVLIMRGMH 1937
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDG 736
N ++ G R P MK+D+ L+NPKE+YHE HRP HF NF + +D G
Sbjct: 2273 NYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLG 2318
>sp|Q8T295|PRP8_DICDI Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium
discoideum GN=prpf8 PE=3 SV=1
Length = 2327
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/279 (73%), Positives = 236/279 (84%), Gaps = 2/279 (0%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AF RLILILRALHVN ERTK+ILKP+K+ IT+PHHIWP+L++ EW+ VE LKDLILAD+
Sbjct: 1920 AFLRLILILRALHVNLERTKIILKPNKNVITQPHHIWPTLTEQEWLTVEGSLKDLILADF 1979
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQ-QIAEIEKQTKEQSQLTATTTRTVNKH 538
GK+NNVNVASLTQSEIRDIILGMEISAPS QR+ QIAEIEKQ E S LTA T R+ N H
Sbjct: 1980 GKRNNVNVASLTQSEIRDIILGMEISAPSQQREDQIAEIEKQKTEASHLTAVTVRSTNIH 2039
Query: 539 GDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETG-YTYILPKN 597
G+EIIT+ TS +E F SKT+WRVRAISATNLHLRTN IYV+SD+ KETG +TY+ PKN
Sbjct: 2040 GEEIITTATSPHEQKVFSSKTDWRVRAISATNLHLRTNQIYVNSDNAKETGGFTYVFPKN 2099
Query: 598 VLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYL 657
+LKKF+TI+DLR QI GY YG+SP DNP VKEIRCIVMPPQWGT V +P LP H YL
Sbjct: 2100 ILKKFITIADLRTQIMGYCYGISPPDNPSVKEIRCIVMPPQWGTPVHVTVPNQLPEHEYL 2159
Query: 658 KEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDG 696
K++EPLGWIHTQP ELPQLSPQDV +H+KIM+DN SWDG
Sbjct: 2160 KDLEPLGWIHTQPTELPQLSPQDVITHSKIMSDNKSWDG 2198
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/332 (49%), Positives = 207/332 (62%), Gaps = 32/332 (9%)
Query: 904 SMEISAPSAQRQ-QIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKT 962
MEISAPS QR+ QIAEIEKQ E S LTA T R+ N HG+EIIT+ TS +E F SKT
Sbjct: 2001 GMEISAPSQQREDQIAEIEKQKTEASHLTAVTVRSTNIHGEEIITTATSPHEQKVFSSKT 2060
Query: 963 EWRVRAISATNLHLRTNHIYVSSDDIKET-GYTYILPKNVLKKFVTISDLRAQIAGYLYD 1021
+WRVRAISATNLHLRTN IYV+SD+ KET G+TY+ PKN+LKKF+TI+DLR QI GY Y
Sbjct: 2061 DWRVRAISATNLHLRTNQIYVNSDNAKETGGFTYVFPKNILKKFITIADLRTQIMGYCYG 2120
Query: 1022 HLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFE-----GNL 1076
+S ++ + + + Q V T ++ H+ + G +
Sbjct: 2121 ---------ISPPDNPSVK---EIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWI 2168
Query: 1077 TTKPINGAIFIFNPRTGQLFLKIIH-TSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAY 1135
T+P + +P+ KI+ W G+K TV+I+ S C+LTAY
Sbjct: 2169 HTQPTE--LPQLSPQDVITHSKIMSDNKSWDGEK--------TVIISVSVA-WPCTLTAY 2217
Query: 1136 KLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRH 1195
LTPSGFEWG+ N D N +GY P YE+VQMLLSDRFLGF+MVP + SWNYNFMGV+H
Sbjct: 2218 HLTPSGFEWGKNNKDSLNY-QGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKH 2276
Query: 1196 DPNMKYDLQLANPKEFYHEIHRPAHFLNFSSL 1227
NM Y L+L PK FY E HRPAHF N++ +
Sbjct: 2277 STNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/153 (73%), Positives = 132/153 (86%), Gaps = 4/153 (2%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
++ ++GNWF G KPL+Q+A+AKI+K+NPALYVLRERIRK LQLYSSEPTEPYLSSQN+G
Sbjct: 1698 NIYSSFGNWFLGVKPLVQKAMAKILKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNFG 1757
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELFSN+I+WFVDD+NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHT VW G
Sbjct: 1758 ELFSNKIMWFVDDSNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTDVWLG 1817
Query: 413 QKRLGQLA----FSRLILILRALHVNTERTKVI 441
QKRLGQLA + ++R+L V + ++I
Sbjct: 1818 QKRLGQLAKWKTAEEVAALIRSLPVEEQPKQII 1850
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 91/110 (82%), Positives = 100/110 (90%)
Query: 31 HSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA 90
SDL++SKQTD GITHF SGMSHDEDQLIPNLYRYIQPWE E DSQRVWAEYA+K +EA
Sbjct: 1326 QSDLKYSKQTDTGITHFTSGMSHDEDQLIPNLYRYIQPWEQEIKDSQRVWAEYAIKYEEA 1385
Query: 91 NAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQ 140
+QN+ LTLEDLEDSWDRGIPRINTLFQK RHTLAYDKGWR+RT++KQYQ
Sbjct: 1386 KSQNKNLTLEDLEDSWDRGIPRINTLFQKSRHTLAYDKGWRVRTDWKQYQ 1435
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 78/86 (90%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYDKGWR+RT++KQYQVLK NPFWWT+QRHDGKLWNLNNYRTD+IQALGGVEGILE
Sbjct: 1416 RHTLAYDKGWRVRTDWKQYQVLKNNPFWWTNQRHDGKLWNLNNYRTDIIQALGGVEGILE 1475
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLFKGTYFPTWEGLF + F S
Sbjct: 1476 HTLFKGTYFPTWEGLFWEKASGFEES 1501
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 64/68 (94%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F ++I+WFVDD+NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHT VW GQ
Sbjct: 1759 LFSNKIMWFVDDSNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTDVWLGQ 1818
Query: 1109 KRLGQLGE 1116
KRLGQL +
Sbjct: 1819 KRLGQLAK 1826
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 71/84 (84%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTA 198
Y+DMNHTNSYG+IRGLQFASFI QYYGLVLDLLVLGL+RAS +AGPP +PN FLTF
Sbjct: 1008 YKDMNHTNSYGLIRGLQFASFIFQYYGLVLDLLVLGLERASALAGPPNLPNSFLTFPSVQ 1067
Query: 199 TELAHPIRLYCRYVDKVHLFLRHT 222
TE AHPIRLY RYVD++H+ + T
Sbjct: 1068 TETAHPIRLYSRYVDRIHVLYKFT 1091
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 56/58 (96%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
IVNKWNTALIGLMTY+RE+VV T+E+LD+LV+CENKIQTR+KIGLNSKMP+RFPP VF
Sbjct: 1248 IVNKWNTALIGLMTYYREAVVTTREMLDILVRCENKIQTRVKIGLNSKMPNRFPPVVF 1305
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKF 849
VFDQELD LEI V KE IHPRKSYKMNSSCAD+LL A +KW VSRPSLL D++ +
Sbjct: 1585 VFDQELDNLEISVVNKEAIHPRKSYKMNSSCADILLRATHKWQVSRPSLLNDNRDTY 1641
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 37/42 (88%)
Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
+ILKP+K+ IT+PHHIWP+L++ EW+ VE LKDLILAD+GK
Sbjct: 1940 IILKPNKNVITQPHHIWPTLTEQEWLTVEGSLKDLILADFGK 1981
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 687 IMADNASWD----GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSL 731
++ D SW+ GV+H NM Y L+L PK FY E HRPAHF N++ +
Sbjct: 2260 MVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 32/38 (84%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSK 38
MVLFN+YDDWL TI SYTAF RLILILRALH +L +K
Sbjct: 1902 MVLFNIYDDWLSTIHSYTAFLRLILILRALHVNLERTK 1939
>sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spp42 PE=1 SV=1
Length = 2363
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/280 (65%), Positives = 229/280 (81%), Gaps = 4/280 (1%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRLILILRAL+VNTE+TK+IL+PDKS IT+ +H+WP+L D +W+ VE +L+DLILADY
Sbjct: 1956 AFSRLILILRALNVNTEKTKLILRPDKSIITKENHVWPNLDDQQWLDVEPKLRDLILADY 2015
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG 539
KKNN+NVASLT SE+RDIILGM I+APS QRQQIAEIEKQ +E +Q+TA TT+T N HG
Sbjct: 2016 AKKNNINVASLTNSEVRDIILGMTITAPSLQRQQIAEIEKQGRENAQVTAVTTKTTNVHG 2075
Query: 540 DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKET-GYTYILPKNV 598
DE++ +TTS YE F SKTEWR RAIS+ +L LRT +IYV+SD+I ET YTYILP+N+
Sbjct: 2076 DEMVVTTTSAYENEKFSSKTEWRNRAISSISLPLRTKNIYVNSDNISETFPYTYILPQNL 2135
Query: 599 LKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGH---P 655
L+KFVTISDLR Q+AGY+YG SP+DNPQ+KEIRCI + PQ G+ + V LP+ LP
Sbjct: 2136 LRKFVTISDLRTQVAGYMYGKSPSDNPQIKEIRCIALVPQLGSIRNVQLPSKLPHDLQPS 2195
Query: 656 YLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWD 695
L+++EPLGWIHTQ +ELP LS DVT+HAKI++ + WD
Sbjct: 2196 ILEDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPEWD 2235
Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 127/154 (82%), Gaps = 4/154 (2%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
+ AYGNW PG KPLIQQ++ KIMKANPALYVLRERIRK LQLY+SEP E YLSS NY
Sbjct: 1734 NMHSAYGNWIPGMKPLIQQSMNKIMKANPALYVLRERIRKGLQLYASEPQEQYLSSSNYA 1793
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELFSNQI FVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAG
Sbjct: 1794 ELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAG 1853
Query: 413 QKRLGQLA----FSRLILILRALHVNTERTKVIL 442
QKRLGQLA + ++R+L V + ++I+
Sbjct: 1854 QKRLGQLAKWKTAEEVAALIRSLPVEEQPRQIIV 1887
Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/110 (89%), Positives = 103/110 (93%)
Query: 31 HSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEA 90
SDLRWSKQTD GITHFRSGM+ + + LIPNLYRYIQPWESEFIDSQRVWAEYA+KRQEA
Sbjct: 1361 QSDLRWSKQTDTGITHFRSGMTTNGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEA 1420
Query: 91 NAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQ 140
QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR+RTEFKQYQ
Sbjct: 1421 LQQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKQYQ 1470
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
Query: 905 MEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEW 964
M I+APS QRQQIAEIEKQ +E +Q+TA TT+T N HGDE++ +TTS YE F SKTEW
Sbjct: 2038 MTITAPSLQRQQIAEIEKQGRENAQVTAVTTKTTNVHGDEMVVTTTSAYENEKFSSKTEW 2097
Query: 965 RVRAISATNLHLRTNHIYVSSDDIKET-GYTYILPKNVLKKFVTISDLRAQIAGYLY 1020
R RAIS+ +L LRT +IYV+SD+I ET YTYILP+N+L+KFVTISDLR Q+AGY+Y
Sbjct: 2098 RNRAISSISLPLRTKNIYVNSDNISETFPYTYILPQNLLRKFVTISDLRTQVAGYMY 2154
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 73/86 (84%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYDKGWR+RTEFKQYQ+LK NPFWWT QRHDGKLW LNNYR D+IQALGGVEGILE
Sbjct: 1451 RHTLAYDKGWRVRTEFKQYQLLKNNPFWWTSQRHDGKLWQLNNYRVDVIQALGGVEGILE 1510
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HT+FK T FP+WEGLF + F S
Sbjct: 1511 HTMFKATGFPSWEGLFWEKASGFEES 1536
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/68 (88%), Positives = 64/68 (94%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QI FVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWAGQ
Sbjct: 1795 LFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQ 1854
Query: 1109 KRLGQLGE 1116
KRLGQL +
Sbjct: 1855 KRLGQLAK 1862
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 1117 KTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTD-KGNNPKGYLPSHYERVQMLLSDRFL 1175
K V +T S+ PGS SL AY ++ G EWG +N D + GY PS E+ Q+LLSDR
Sbjct: 2237 KAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQ 2296
Query: 1176 GFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGD 1231
GFF+VP + WNYNF G P M Y L+L P F+ HRP H ++++ LE D
Sbjct: 2297 GFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETND 2352
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 73/84 (86%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTA 198
Y+DM+HTNSYG++RGLQF+SFI Q+YGLVLDLL+LGLQRA+E+AGP PNDFL F+D A
Sbjct: 1042 YKDMSHTNSYGLVRGLQFSSFIWQFYGLVLDLLILGLQRATEIAGPADAPNDFLHFKDQA 1101
Query: 199 TELAHPIRLYCRYVDKVHLFLRHT 222
TE +HPIRLY RY+DKV++ R T
Sbjct: 1102 TETSHPIRLYTRYIDKVYIMFRFT 1125
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/58 (81%), Positives = 53/58 (91%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
I NKWNTALI LMTY+RE+ ++T ELLDLLVKCE+KIQTR+KI LNSKMPSRFPPAVF
Sbjct: 1283 IANKWNTALIALMTYYREAAISTPELLDLLVKCESKIQTRVKISLNSKMPSRFPPAVF 1340
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 51/54 (94%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSK 846
V DQEL++L+IETVQKETIHPRKSYKMNSSCAD+LL AAYKWNVSRPSLL D++
Sbjct: 1620 VLDQELESLQIETVQKETIHPRKSYKMNSSCADILLLAAYKWNVSRPSLLNDNR 1673
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 30/36 (83%)
Query: 840 SLLADSKGKFPPVVFYTPKELGGLGMLSMGHVLIPQ 875
SL + +FPP VFY+PKELGGLGMLSMGHVLIPQ
Sbjct: 1326 SLNSKMPSRFPPAVFYSPKELGGLGMLSMGHVLIPQ 1361
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
+IL+PDKS IT+ +H+WP+L D +W+ VE +L+DLILADY K
Sbjct: 1976 LILRPDKSIITKENHVWPNLDDQQWLDVEPKLRDLILADYAK 2017
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/31 (87%), Positives = 31/31 (100%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALH 31
MVLFNLYDDWL+++SSYTAFSRLILILRAL+
Sbjct: 1938 MVLFNLYDDWLQSVSSYTAFSRLILILRALN 1968
>sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP8 PE=1 SV=1
Length = 2413
Score = 265 bits (676), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 196/281 (69%), Gaps = 11/281 (3%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 2004 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 2063
Query: 480 GKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIE-----KQTKEQSQLTATT--T 532
G+K NVN+++LTQ+EI+DIILG I APS +RQ++AE+E KQ E++ +T T
Sbjct: 2064 GRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKT 2123
Query: 533 RTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTY 592
+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+DD E Y
Sbjct: 2124 KTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVY 2183
Query: 593 ILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLP 652
+LPKN+LKKF+ ISD++ Q+A ++YG+S D+P+VKEI+ +V+ PQ G +V + +++P
Sbjct: 2184 VLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIP 2242
Query: 653 ---GHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMAD 690
P + +E LGWIHTQ EL ++ +V +H+K+ AD
Sbjct: 2243 DIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD 2283
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 193/367 (52%), Gaps = 36/367 (9%)
Query: 875 QVRELFKYNWGFIYTVSLDFYD--NMSHYVNSMEISAPSAQRQQIAEIE-----KQTKEQ 927
Q+R+L +G Y V++ + + I APS +RQ++AE+E KQ E+
Sbjct: 2054 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 2113
Query: 928 SQLTATT--TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 985
+ +T T+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+
Sbjct: 2114 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 2173
Query: 986 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDH 1045
DD E Y+LPKN+LKKF+ ISD++ Q+A ++Y + H +V T + Q H
Sbjct: 2174 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYG-MSAKDHPKVKEIKTVVLVPQLGH 2232
Query: 1046 QTFIFHSQI--IWFVDDTNVYRVT--IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH 1101
+ S I I + DT + IH E F+ H
Sbjct: 2233 VGSVQISNIPDIGDLPDTEGLELLGWIHTQTE---------ELKFMAASEVA------TH 2277
Query: 1102 TSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNN-PKGYLP 1160
+ ++A +KR + I+ TPGS SL+AY LT G++WG +N D N +G+ P
Sbjct: 2278 SKLFADKKR------DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEP 2331
Query: 1161 SHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAH 1220
+ Q+LLSDR G F++P+ + WNY FMG + Y+ + P EFY+E+HRP H
Sbjct: 2332 TFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVH 2391
Query: 1221 FLNFSSL 1227
FL FS L
Sbjct: 2392 FLQFSEL 2398
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 104/128 (81%)
Query: 293 GLFCAYGNWFPGSKPLIQQALAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYG 352
++ AYGNWF G KPLIQ ++ IMKANPALYVLRERIRK LQ+Y S EP+L+S NY
Sbjct: 1782 NMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSSNYA 1841
Query: 353 ELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAG 412
ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAG
Sbjct: 1842 ELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAG 1901
Query: 413 QKRLGQLA 420
QKRL QLA
Sbjct: 1902 QKRLSQLA 1909
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 95/108 (87%)
Query: 32 SDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAN 91
SDL WSKQTD GITHFR+GM+H++++LIP ++RYI WE+EF+DSQRVWAEYA KRQEA
Sbjct: 1410 SDLSWSKQTDTGITHFRAGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAI 1469
Query: 92 AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQY 139
QNRRL E+LE SWDRGIPRI+TLFQ+DRHTLAYD+G RIR EFKQY
Sbjct: 1470 QQNRRLAFEELEGSWDRGIPRISTLFQRDRHTLAYDRGHRIRREFKQY 1517
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 220 RHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILE 279
RHTLAYD+G RIR EFKQY + + +PFWWT+ HDGKLWNLN YRTD+IQALGG+E ILE
Sbjct: 1499 RHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRTDVIQALGGIETILE 1558
Query: 280 HTLFKGTYFPTWEGLFCAYGNWFPGS 305
HTLFKGT F +WEGLF + F S
Sbjct: 1559 HTLFKGTGFNSWEGLFWEKASGFEDS 1584
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 7/107 (6%)
Query: 139 YQDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDTA 198
++DM+H N YG+IRGL+FASFI QYYGLV+DLL+LG +RA+++AGP PN+F+ F+
Sbjct: 1092 FKDMSHVNKYGLIRGLKFASFIFQYYGLVIDLLLLGQERATDLAGPANNPNEFMQFKSKE 1151
Query: 199 TELAHPIRLYCRYVDKVHLFLRHTLAYDKGWRIRTEFKQYQVLKQNP 245
E AHPIRLY RY+D++++ D+G + E+ L +NP
Sbjct: 1152 VEKAHPIRLYTRYLDRIYMLFH--FEEDEGEELTDEY-----LAENP 1191
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 1843 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 1902
Query: 1109 KRLGQLGE 1116
KRL QL +
Sbjct: 1903 KRLSQLAK 1910
Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 737 IVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVF 794
+ KWNT+LI L TYFRE++V T+ LLD+LVK E +IQ R+K+GLNSKMP+RFPPAVF
Sbjct: 1331 VAAKWNTSLISLFTYFREAIVATEPLLDILVKGETRIQNRVKLGLNSKMPTRFPPAVF 1388
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 793 VFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPV 852
+ D ELD L+IE+V KET+HPRKSYKMNSS AD+ + + ++W VS+PSLL ++ F +
Sbjct: 1668 ILDGELDVLQIESVTKETVHPRKSYKMNSSAADITMESVHEWEVSKPSLLHETNDSFKGL 1727
Query: 853 V 853
+
Sbjct: 1728 I 1728
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSD 33
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++
Sbjct: 1986 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTN 2018
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 848 KFPPVVFYTPKELGGLGMLSMGHVLIP 874
+FPP VFYTPKELGGLGM+S H+LIP
Sbjct: 1382 RFPPAVFYTPKELGGLGMISASHILIP 1408
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 1228 EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
E+ +IL D + + +H+WPS +D++WI +E Q++DLIL +YG+
Sbjct: 2019 EESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGR 2065
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 691 NASWDGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSL 731
N ++ G + Y+ + P EFY+E+HRP HFL FS L
Sbjct: 2358 NYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSEL 2398
>sp|Q32KV2|MAEL_BOVIN Protein maelstrom homolog OS=Bos taurus GN=MAEL PE=2 SV=1
Length = 420
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 42 VGITHFRSGMSHDEDQLIPNLYRYIQP----WESEFIDS-QRVWAEYALKRQEANAQNRR 96
+ I+HF SG HD+ +I NLYR+I P W + S R + LK +++ R+
Sbjct: 167 IPISHFESG--HDQATVIENLYRFIHPNPGNWPPIYCKSDDRARVNWCLKHMAKSSEIRQ 224
Query: 97 ----LTLEDL 102
LT+EDL
Sbjct: 225 DLELLTVEDL 234
>sp|B8JDD8|SYGB_ANAD2 Glycine--tRNA ligase beta subunit OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=glyS PE=3 SV=1
Length = 701
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 501 GMEISA------PSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETAT 554
G+E+SA P +R + ++EK + + L A R V G + S ++ AT
Sbjct: 97 GVEVSALVRAQTPKGERVAVTKVEKGRRAEQVLPALLERLVG--GLRFRKAMRSRFDEAT 154
Query: 555 FGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKK 601
F W V + L +R H V+S + G+ ++ PK + K
Sbjct: 155 FARPVRWMVALLGGRPLKVR--HGEVTSGKVT-YGHRFLAPKAIALK 198
>sp|B4UG87|SYGB_ANASK Glycine--tRNA ligase beta subunit OS=Anaeromyxobacter sp. (strain
K) GN=glyS PE=3 SV=1
Length = 701
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 501 GMEISA------PSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETAT 554
G+E+SA P +R + ++EK + + L A R V G + S ++ AT
Sbjct: 97 GVEVSALVRAQTPKGERVAVTKVEKGRRAEQVLPALLERLVG--GLRFRKAMRSRFDEAT 154
Query: 555 FGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKK 601
F W V + L +R H V+S + G+ ++ PK + K
Sbjct: 155 FARPVRWMVALLGGRPLKVR--HGEVTSGKVT-YGHRFLAPKAIALK 198
>sp|Q9LYN2|FRI3_ARATH Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1
Length = 259
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 742 NTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPAVFDQ 796
N AL GL +F+ES V +E +LL++ +NK R+K+ P P + FD
Sbjct: 124 NVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRVKL-----QPMVLPQSEFDH 173
>sp|A4UTQ0|MAEL_PIG Protein maelstrom homolog OS=Sus scrofa GN=MAEL PE=2 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 42 VGITHFRSGMSHDEDQLIPNLYRYIQP----WESEFI---DSQRV-WA-EYALKRQEANA 92
+ I+HF SG HD+ ++ NLYR+I+P W + D RV W +Y K E
Sbjct: 181 IPISHFESG--HDQATVLQNLYRFIRPNSGKWPPIYCKSDDRARVNWCLKYMAKSSEITQ 238
Query: 93 QNRRLTLEDL 102
+T+EDL
Sbjct: 239 DLELVTVEDL 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,931,851
Number of Sequences: 539616
Number of extensions: 20876854
Number of successful extensions: 48764
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 48648
Number of HSP's gapped (non-prelim): 114
length of query: 1282
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1153
effective length of database: 121,958,995
effective search space: 140618721235
effective search space used: 140618721235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)