Query psy3344
Match_columns 1282
No_of_seqs 210 out of 266
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:36:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbg_A PRE-mRNA-splicing facto 100.0 8E-190 3E-194 1585.1 24.7 345 345-690 2-451 (565)
2 2p8r_A PRP8, PRE-mRNA-splicing 100.0 3.5E-90 1.2E-94 737.2 15.6 140 552-691 1-140 (273)
3 2og4_A PRE-mRNA-splicing facto 100.0 1.9E-85 6.4E-90 695.3 15.1 137 553-689 1-139 (254)
4 3sbt_A PRE-mRNA-splicing facto 100.0 7.1E-81 2.4E-85 649.4 11.5 164 345-508 2-260 (260)
5 3e9l_A PRE-mRNA-processing-spl 100.0 7.4E-80 2.5E-84 641.0 11.2 162 343-504 1-257 (257)
6 3sbg_A PRE-mRNA-splicing facto 100.0 8.6E-66 2.9E-70 580.4 -9.6 215 1043-1276 5-235 (565)
7 3enb_A PRE-mRNA-processing-spl 100.0 9.5E-62 3.2E-66 498.4 9.1 127 352-478 1-222 (222)
8 3sbt_A PRE-mRNA-splicing facto 100.0 3.6E-62 1.2E-66 509.2 -10.2 215 1043-1276 5-235 (260)
9 3e9l_A PRE-mRNA-processing-spl 100.0 7.8E-62 2.7E-66 506.1 -9.9 219 1038-1276 2-236 (257)
10 3enb_A PRE-mRNA-processing-spl 100.0 8.4E-59 2.9E-63 476.6 -9.7 206 1047-1271 1-222 (222)
11 2p8r_A PRP8, PRE-mRNA-splicing 100.0 1.1E-29 3.7E-34 272.2 5.1 246 955-1231 1-261 (273)
12 2og4_A PRE-mRNA-splicing facto 99.9 1.6E-28 5.6E-33 261.1 5.0 242 956-1226 1-254 (254)
13 3rzv_A STAM-binding protein; u 99.4 1.2E-14 4.2E-19 151.9 -0.4 102 590-694 42-149 (211)
14 2znr_A AMSH-like protease; met 99.4 5.5E-14 1.9E-18 142.9 -0.3 99 590-691 9-113 (178)
15 3rzv_A STAM-binding protein; u 99.1 4.9E-12 1.7E-16 132.4 0.1 142 992-1167 41-196 (211)
16 2znr_A AMSH-like protease; met 98.9 8.5E-11 2.9E-15 119.6 -0.1 141 993-1167 9-163 (178)
17 1oi0_A AF2198, hypothetical pr 72.6 2.6 8.8E-05 40.1 3.7 82 592-685 4-88 (124)
18 4b4t_V 26S proteasome regulato 70.5 2 6.9E-05 47.3 2.8 94 606-701 43-143 (306)
19 2kcq_A MOV34/MPN/PAD-1 family; 67.7 1.7 5.7E-05 42.8 1.3 85 593-683 2-99 (153)
20 2kks_A Uncharacterized protein 67.4 3.1 0.00011 40.6 3.1 85 592-683 2-97 (146)
No 1
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-190 Score=1585.15 Aligned_cols=345 Identities=53% Similarity=0.905 Sum_probs=288.6
Q ss_pred CcccccccccccCceEEEecCceeEEEEeeecccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH-----
Q psy3344 345 YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL----- 419 (1282)
Q Consensus 345 ~l~s~Ny~ELF~n~~~wfVDdtnvYRvtihkt~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql----- 419 (1282)
||||+|||||||||++||||||||||||||||||||+||||||||||||||||||||||||||||||||||||||
T Consensus 2 ~Lns~Ny~eLF~nq~~~fvDDtnVYRVtihkTfEGN~tTKpiNGaififNP~TGqLfLKiIHtsvwaGQKRl~QlaKWKt 81 (565)
T 3sbg_A 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT 81 (565)
T ss_dssp CBCTTGGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSSHHHHHHHHH
T ss_pred cccccchHHHhcCceEEEEeCCcEEEEEEEeeccCceeeccccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHhHhH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy3344 420 -------------------------------------------------------------------------------- 419 (1282)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (1282)
T Consensus 82 AEEvaaLirSlP~EEqPkqiIvtrkgmlDpLevhllDfPni~ik~seL~lPF~a~mkiek~~D~ilkAtepqmvlfnlYD 161 (565)
T 3sbg_A 82 AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYD 161 (565)
T ss_dssp HHHHHHHHHHSCTTTSCSEEEESSGGGHHHHHHHTTTCTTSEEECBSSCCGGGGGGSSHHHHHHHHHCCSCEEEEEETTT
T ss_pred HHHHHHHHhcCCHhhCCceEEEechhhhhhHHHhhccCCCceeeccccccCHHHHhhhHHHHHHHhhcCCCcEEEEEeeh
Confidence
Q ss_pred ----------HHHHHHHHHHhcccCcccceeeccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHHhcccCCccccc
Q psy3344 420 ----------AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVAS 489 (1282)
Q Consensus 420 ----------AFsRLiLILRal~vn~~rtk~IL~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~dY~kknnVnvss 489 (1282)
|||||||||||||||++|||+||+||++++|++||+||+|||+|||+||++||||||+|||||||||++|
T Consensus 162 dWL~siSsyTAFsRliLiLRal~vn~~ktk~iL~pd~~~~t~~hHiWPslsd~~Wi~vE~~lkDLIL~dY~kknnvn~~s 241 (565)
T 3sbg_A 162 DWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA 241 (565)
T ss_dssp TGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHTSSTTSCBCTTCSSBCCCHHHHHHHHHHHHHHHHHTTTTTSCCCGGG
T ss_pred hhhhcccchHHHHHHHHHHHHhccCHHHHHHHhcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCcCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccccCCchHHHHHHHHHHHhhhh-------cccceeEEEEEecccCCeEEEEeccccccccccCchhHH
Q psy3344 490 LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKE-------QSQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWR 562 (1282)
Q Consensus 490 LTQsEIRDIILG~eI~~ps~qrqqiaeiE~~~~~-------~~q~ta~tTkT~N~hGeeIvvtTtS~YEqqtFsSKtdWR 562 (1282)
|||||||||||||||+|||+|||||||||++.++ ++|+||+||||+|+|||||+|+|+||||||+|+||||||
T Consensus 242 LTqsEIrDIILG~~i~~pS~qrqq~aeie~~~~~~~~~~~~~~q~Ta~tTkT~NvhGeeIiv~Tts~YEqq~FsSKtdWR 321 (565)
T 3sbg_A 242 LTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWR 321 (565)
T ss_dssp CCHHHHHHHHHTC-------------------------------------------------------------CHHHHH
T ss_pred ccHhhHhhhhhccccCCcchHHHHHHHHHHhhhcccccchhhhceeEEEEEEEecCCCEEEEEecCcccccccccccchH
Confidence 9999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred HHHHHcccccccccceeeecccccccceeeeccchhhccceEeeeccceEEEEEEccCCCCCCcceeEEEEEcCCCcccc
Q psy3344 563 VRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTH 642 (1282)
Q Consensus 563 ~RAIsatnL~LR~~nIYVssdD~~e~~~tyViPKNlLkKFI~ISDlRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~ 642 (1282)
+||||++|||||+|||||++||+.|++++||||||||+|||+|||+||||||||||+||+||||||||+|||||||+|++
T Consensus 322 ~RAIaatnL~lR~~nIYV~sdd~~e~~~tyVlPkNLLkKFI~IADlrTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~ 401 (565)
T 3sbg_A 322 KSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 401 (565)
T ss_dssp HHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHHSCSSSCCEEEEEEEEETTEEEEEEEEEEECCCEEECS
T ss_pred HHHhhhcchhhhhceEEECcccccCCCcEEEccHHHHHHHHHHhhccceeEEEEecCCCCCCCCeEEEEEEEECCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCC---CcCCCCcceeeecCCCCCCCCChHhHHHHHHhhhc
Q psy3344 643 QTVHLPASLPGHP---YLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMAD 690 (1282)
Q Consensus 643 ~sV~lp~~LP~h~---~L~dLEpLGWIHTQ~~El~~Lsp~DVtthAkl~~d 690 (1282)
++|++| .+|+|+ +++|||+||||||||+|+++|||.|+++||++|++
T Consensus 402 ~sv~lp-~lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~ 451 (565)
T 3sbg_A 402 GSVQIS-NIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD 451 (565)
T ss_dssp SCEEEC-CCCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSS
T ss_pred ceEECC-CCCccccccccccCEecceeeecCCcccccCHHHHHHHHHHHHh
Confidence 999999 999999 89999999999999999999999999999999764
No 2
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=100.00 E-value=3.5e-90 Score=737.25 Aligned_cols=140 Identities=76% Similarity=1.285 Sum_probs=133.3
Q ss_pred cccccCchhHHHHHHHcccccccccceeeecccccccceeeeccchhhccceEeeeccceEEEEEEccCCCCCCcceeEE
Q psy3344 552 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIR 631 (1282)
Q Consensus 552 qqtFsSKtdWR~RAIsatnL~LR~~nIYVssdD~~e~~~tyViPKNlLkKFI~ISDlRtQIaGyLYG~SP~Dnp~VKEIr 631 (1282)
||+|+||||||+||||+++||||+|||||+++|++|++++||||||||+|||+|||+||||||||||++|+|||+||||+
T Consensus 1 q~~F~SktdWR~Raisa~nL~lR~~~iyv~s~d~~~~~~t~vlPknllkkFi~IADlrTq~~G~LyG~s~~d~~~vkeI~ 80 (273)
T 2p8r_A 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIR 80 (273)
T ss_dssp -----CHHHHHHHHHHHTTGGGGGGSEEECCTTCCSSSCEEEEEHHHHHHHHHTSCSSSCCEEEEEEECCTTCTTEEEEE
T ss_pred CCcccccchhHHhhhhccccccccccEEECCcccCCCccEEEecHHHHHHHHHHhhccceEEEEEeccCCCCCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccceeecCCCCCCCCCcCCCCcceeeecCCCCCCCCChHhHHHHHHhhhcC
Q psy3344 632 CIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADN 691 (1282)
Q Consensus 632 CIVLvPQ~Gs~~sV~lp~~LP~h~~L~dLEpLGWIHTQ~~El~~Lsp~DVtthAkl~~dN 691 (1282)
|||||||+|++++|++|..+|.|++|+|||+||||||||+|+++|||+||++||+++.+|
T Consensus 81 ~ivipPQ~gt~~sv~~~~~~p~~~~l~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~ 140 (273)
T 2p8r_A 81 CIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDN 140 (273)
T ss_dssp EEECCSBEECSSCEECCSSCCCCTTTTTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHC
T ss_pred EEEECCccCCCceEECCCcCcchhhhccccccceEeeCCCCCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999998764
No 3
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-85 Score=695.30 Aligned_cols=137 Identities=44% Similarity=0.741 Sum_probs=131.2
Q ss_pred ccccCchhHHHHHHHcccccccccceeeecccccccceeeeccchhhccceEeeeccceEEEEEEccCCCCCCcceeEEE
Q psy3344 553 ATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRC 632 (1282)
Q Consensus 553 qtFsSKtdWR~RAIsatnL~LR~~nIYVssdD~~e~~~tyViPKNlLkKFI~ISDlRtQIaGyLYG~SP~Dnp~VKEIrC 632 (1282)
|+|+||||||+||||+++||||+|||||++||++|++++|||||||++|||+|||+|||+||||||++|+|||+||||+|
T Consensus 1 ~~F~SktdWR~Rais~~~L~lR~~~iyv~s~d~~~~~~t~vlPknLlkkFi~IAD~~Tq~cG~LyG~~~~d~~~v~eI~~ 80 (254)
T 2og4_A 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKT 80 (254)
T ss_dssp ----CHHHHHHHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHTSCSSSCCEEEEEEEECSSCTTEEEEEE
T ss_pred CcccccchhHHhhhhccccccccccEEECCcccCCCCcEEEcCHHHHHHHHHHhhccceEEEEEEccCCCCCCCeEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccceeecCCCCCCCCC--cCCCCcceeeecCCCCCCCCChHhHHHHHHhhh
Q psy3344 633 IVMPPQWGTHQTVHLPASLPGHPY--LKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMA 689 (1282)
Q Consensus 633 IVLvPQ~Gs~~sV~lp~~LP~h~~--L~dLEpLGWIHTQ~~El~~Lsp~DVtthAkl~~ 689 (1282)
||||||+|++++|++|..+|.|++ ++|||+||||||||+|+++|||+||.+||+++.
T Consensus 81 ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~ 139 (254)
T 2og4_A 81 VVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFA 139 (254)
T ss_dssp EECCCEEEETTEEEECCCCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHT
T ss_pred EEECCccCCCceEECCCcCccccchhhcCCEecceEeeCCCCCcccCHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999854
No 4
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=100.00 E-value=7.1e-81 Score=649.38 Aligned_cols=164 Identities=64% Similarity=1.064 Sum_probs=157.5
Q ss_pred CcccccccccccCceEEEecCceeEEEEeeecccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH-----
Q psy3344 345 YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL----- 419 (1282)
Q Consensus 345 ~l~s~Ny~ELF~n~~~wfVDdtnvYRvtihkt~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql----- 419 (1282)
||||+||||||+||++||||||||||||+|||||||++|||||||||||||+|||||||||||||||||||||||
T Consensus 2 ~l~s~ny~eLF~n~~~wfvDDtnvYrvt~hkT~eGn~~tkpiNG~ififnP~TGqLfLKiihtsvwaGQKRl~qlaKwKt 81 (260)
T 3sbt_A 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT 81 (260)
T ss_dssp CBCTTSGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHH
T ss_pred ccccccHHHHhcCceEEEEeCCcEEEEEEEeccCCCceeccccceEEEEeCCCCcEEEEEEehhhcccchHHHHHHHHhH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy3344 420 -------------------------------------------------------------------------------- 419 (1282)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (1282)
T Consensus 82 AEEvaalirSlP~eEqPkqiIVtrk~mldpLevhllDfPnI~Ik~sel~lpF~a~mki~k~~d~vlkatep~m~lfnlYD 161 (260)
T 3sbt_A 82 AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYD 161 (260)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEESSGGGHHHHHHHTTTCTTSEEECBSCCCCGGGGGGSHHHHHHHHHCSSCEEEEEETTT
T ss_pred HHHHHHHHHcCCHhhCCceEEEechHhhhHHHHHhhhCCCceeeccccccCHHHHhhhHHHHHHHHhcCCCceEEEEeeh
Confidence
Q ss_pred ----------HHHHHHHHHHhcccCcccceeeccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHHhcccCCccccc
Q psy3344 420 ----------AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVAS 489 (1282)
Q Consensus 420 ----------AFsRLiLILRal~vn~~rtk~IL~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~dY~kknnVnvss 489 (1282)
|||||||||||||||++|||+||+||++++|++||+||+|||+|||+||++||||||+|||||||||++|
T Consensus 162 dWL~siS~~TAFsRLiLiLR~l~vn~~k~k~iL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~dy~kk~nvn~~s 241 (260)
T 3sbt_A 162 DWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA 241 (260)
T ss_dssp TGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHSSCTTSCCCTTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred hhhhccccHHHHHHHHHHHHHhccCHHHHHHhhCCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccccCCch
Q psy3344 490 LTQSEIRDIILGMEISAPS 508 (1282)
Q Consensus 490 LTQsEIRDIILG~eI~~ps 508 (1282)
|||||||||||||+|+|||
T Consensus 242 LTqsEIrDIILG~~i~~ps 260 (260)
T 3sbt_A 242 LTQTEIKDIILGQNIKAPS 260 (260)
T ss_dssp CCHHHHHHHHHCC------
T ss_pred ccHHHHHHHhhccccCCCC
Confidence 9999999999999999997
No 5
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=100.00 E-value=7.4e-80 Score=640.98 Aligned_cols=162 Identities=96% Similarity=1.447 Sum_probs=161.0
Q ss_pred CCCcccccccccccCceEEEecCceeEEEEeeecccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH---
Q psy3344 343 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL--- 419 (1282)
Q Consensus 343 e~~l~s~Ny~ELF~n~~~wfVDdtnvYRvtihkt~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql--- 419 (1282)
||||||+||||||+||++||||||||||||+|||||||++|||||||||||||+|||||||||||||||||||||||
T Consensus 1 e~~l~s~ny~eLF~n~~~wfvDDtnvYrvt~h~T~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKw 80 (257)
T 3e9l_A 1 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKW 80 (257)
T ss_dssp CEEECTTTGGGGGSSSCEEEEECTTSSEEEEEECSSSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHH
T ss_pred CCccccccHHHHhcCceEEEEeCCcEEEEEEEeccCCCceeccccceEEEEeCCCCcEEEEEEEhhhcccchHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy3344 420 -------------------------------------------------------------------------------- 419 (1282)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (1282)
T Consensus 81 KtAEEv~alirslP~eEqPkqiIVtrk~mldpLevhllDfPnI~Ik~sel~lpF~a~mki~k~~d~vl~atep~m~lfnl 160 (257)
T 3e9l_A 81 KTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNL 160 (257)
T ss_dssp HHHHHHHHHHHHSCGGGSCSEEEESSGGGHHHHHHHTTTCTTCEEEEESSCCCGGGGGGSHHHHHHHHHCSSCEEEEEET
T ss_pred HHHHHHHHHHHhCCHhhCCceEEEechHhhhHHHHHhhhCCCceeeccccccCHHHHhhhHHHHHHHHhccCCceEEEEe
Confidence
Q ss_pred ------------HHHHHHHHHHhcccCcccceeeccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHHhcccCCccc
Q psy3344 420 ------------AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNV 487 (1282)
Q Consensus 420 ------------AFsRLiLILRal~vn~~rtk~IL~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~dY~kknnVnv 487 (1282)
|||||||||||||||++|||+||+||++++|++||+||+|||+|||+||++||||||+|||||||||+
T Consensus 161 YDdWL~siS~~TAFsRLiLiLR~l~vn~~ktk~IL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~dy~k~~nv~~ 240 (257)
T 3e9l_A 161 YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNV 240 (257)
T ss_dssp TTTGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHTCCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred ehhhhhccccHHHHHHHHHHHHHcccCHHHhhHhhcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhhcccc
Q psy3344 488 ASLTQSEIRDIILGMEI 504 (1282)
Q Consensus 488 ssLTQsEIRDIILG~eI 504 (1282)
+||||||||||||||||
T Consensus 241 ~sLTQsEIrDIILG~~i 257 (257)
T 3e9l_A 241 ASLTQSEIRDIILGMEI 257 (257)
T ss_dssp GGCCHHHHHHHHHTCCC
T ss_pred ccccHHHHHHhhccccC
Confidence 99999999999999997
No 6
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-66 Score=580.43 Aligned_cols=215 Identities=40% Similarity=0.633 Sum_probs=204.0
Q ss_pred cCccceeeccceeeeecCCceeeeeecccccCCccccccCCcceeccCCcccceeeeEeeccccccccccccCcceEEEE
Q psy3344 1043 SDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVIT 1122 (1282)
Q Consensus 1043 ~~~~~~~f~~qi~wf~ddtn~~rV~~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~~~krl~q~~k~ti~~t 1122 (1282)
|+||+|+|+||++||+||||||||++|+|||||++|||+|||||||||+||||||||||||||+|||||+|++||+.++|
T Consensus 5 s~Ny~eLF~nq~~~fvDDtnVYRVtihkTfEGN~tTKpiNGaififNP~TGqLfLKiIHtsvwaGQKRl~QlaKWKtAEE 84 (565)
T 3sbg_A 5 SSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEE 84 (565)
T ss_dssp TTGGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSSHHHHHHHHHHHH
T ss_pred ccchHHHhcCceEEEEeCCcEEEEEEEeeccCceeeccccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHhHhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCeeeeeccccCCCcccccccccCCCCCCCCCCCchhhhhhhhccccccCc------eeccCCCcccccccccccC
Q psy3344 1123 CSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGF------FMVPAQSSWNYNFMGVRHD 1196 (1282)
Q Consensus 1123 vSftpgS~SL~A~~lT~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQmLLsDrflGf------fmVP~~~~WNy~fmG~~~~ 1196 (1282)
|+++.+|++. ++|||+++++++||++|+ +|+|| | |... +.+|++++++.+++|+...
T Consensus 85 vaaLirSlP~------------EEqPkqiIvtrkgmlDpL--evhll--D-fPni~ik~seL~lPF~a~mkiek~~D~il 147 (565)
T 3sbg_A 85 VSALVRSLPK------------EEQPKQIIVTRKAMLDPL--EVHML--D-FPNIAIRPTELRLPFSAAMSIDKLSDVVM 147 (565)
T ss_dssp HHHHHHHSCT------------TTSCSEEEESSGGGHHHH--HHHTT--T-CTTSEEECBSSCCGGGGGGSSHHHHHHHH
T ss_pred HHHHHhcCCH------------hhCCceEEEechhhhhhH--HHhhc--c-CCCceeeccccccCHHHHhhhHHHHHHHh
Confidence 9999997777 999999999999999996 46554 3 3322 5899999999999999999
Q ss_pred CCcceeeecCCccchhhcccCcccccccccC----------CCCCcccccCCCccccCccccCCCCCccceeeeehhhhh
Q psy3344 1197 PNMKYDLQLANPKEFYHEIHRPAHFLNFSSL----------EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKD 1266 (1282)
Q Consensus 1197 ~~~ky~~~L~~P~~Fy~elHRP~hF~~Fs~l----------ed~~~~~l~p~~~~~t~~hhiwp~l~~~~w~~ve~~l~d 1266 (1282)
.+.+++|+|+|. |.|||.+.|.|+||||| ++++++||+|||++||+||||||||||||||+||++|||
T Consensus 148 kAtepqmvlfnl--YDdWL~siSsyTAFsRliLiLRal~vn~~ktk~iL~pd~~~~t~~hHiWPslsd~~Wi~vE~~lkD 225 (565)
T 3sbg_A 148 KATEPQMVLFNI--YDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRD 225 (565)
T ss_dssp HCCSCEEEEEET--TTTGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHTSSTTSCBCTTCSSBCCCHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEe--ehhhhhcccchHHHHHHHHHHHHhccCHHHHHHHhcCCCCccccccccCCCCCHHHHHHHHHHHHH
Confidence 999999999998 88999999999999997 799999999999999999999999999999999999999
Q ss_pred hhhhcccccc
Q psy3344 1267 LILADYGKSR 1276 (1282)
Q Consensus 1267 ~il~dy~k~~ 1276 (1282)
|||+|||||-
T Consensus 226 LIL~dY~kkn 235 (565)
T 3sbg_A 226 LILTEYGRKY 235 (565)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 7
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=100.00 E-value=9.5e-62 Score=498.38 Aligned_cols=127 Identities=94% Similarity=1.467 Sum_probs=123.6
Q ss_pred cccccCceEEEecCceeEEEEeeecccCccccccccceEEEEcCCCCceEEEEEeeccccccchhhHH------------
Q psy3344 352 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL------------ 419 (1282)
Q Consensus 352 ~ELF~n~~~wfVDdtnvYRvtihkt~egn~~tKpiNG~IFifNP~TGqLfLKIiHtsvWagQKRL~Ql------------ 419 (1282)
||||+||++||||||||||||+|||||||++|||||||||||||+|||||||||||||||||||||||
T Consensus 1 ~eLF~n~~~wfvDDtnvYrvt~h~T~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKwKtAEEv~al 80 (222)
T 3enb_A 1 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAAL 80 (222)
T ss_dssp --CCSSSCEEEEECTTSSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGCCSCSCHHHHHHHHHHHHHHHH
T ss_pred CccccCceEEEEeCCcEEEEEEEeccCCCceeecccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy3344 420 -------------------------------------------------------------------------------- 419 (1282)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (1282)
T Consensus 81 irslP~eEqPkqiIVtrk~mldplevhlldfPnI~Ik~sel~lpF~a~mki~k~~d~vl~atep~m~lfnlYDdWL~siS 160 (222)
T 3enb_A 81 IRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTIS 160 (222)
T ss_dssp HHHSCGGGSCSEEEESSGGGHHHHHHHTTTCTTCEEEECCCCCCGGGGGGSHHHHHHHHHCSSCEEEEEETTTTGGGTSC
T ss_pred HHhCCHhhCCceEEEechHhhhHHHHHhhhCCCceeeccccccCHHHHhhhHHHHHHHHhccCCcEEEEEeehhhhhccc
Confidence
Q ss_pred ---HHHHHHHHHHhcccCcccceeeccCCCCccccccccCCCCCchhhhHHHHHHhHHHHHH
Q psy3344 420 ---AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 478 (1282)
Q Consensus 420 ---AFsRLiLILRal~vn~~rtk~IL~p~~~~it~~hhiWPslsDeeWIkvEv~LkDLIL~d 478 (1282)
|||||||||||||||++|||+||+||++++|++||+||+|||+|||+||++||||||+|
T Consensus 161 ~~TAFsRLiLiLR~l~vn~~ktk~IL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~d 222 (222)
T 3enb_A 161 SYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222 (222)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHTCCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHccCCHHHhhhhccCCCCeeccccccCCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 8
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=100.00 E-value=3.6e-62 Score=509.18 Aligned_cols=215 Identities=40% Similarity=0.633 Sum_probs=203.1
Q ss_pred cCccceeeccceeeeecCCceeeeeecccccCCccccccCCcceeccCCcccceeeeEeeccccccccccccCcceEEEE
Q psy3344 1043 SDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVIT 1122 (1282)
Q Consensus 1043 ~~~~~~~f~~qi~wf~ddtn~~rV~~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~~~krl~q~~k~ti~~t 1122 (1282)
|+||+|+|+||++||+||+|+|||++|+|+|||++|||+|||||||||+|||+|||||||++|+|||||+|++||+.++|
T Consensus 5 s~ny~eLF~n~~~wfvDDtnvYrvt~hkT~eGn~~tkpiNG~ififnP~TGqLfLKiihtsvwaGQKRl~qlaKwKtAEE 84 (260)
T 3sbt_A 5 SSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEE 84 (260)
T ss_dssp TTSGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHHHHH
T ss_pred cccHHHHhcCceEEEEeCCcEEEEEEEeccCCCceeccccceEEEEeCCCCcEEEEEEehhhcccchHHHHHHHHhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCeeeeeccccCCCcccccccccCCCCCCCCCCCchhhhhhhhccccccCc------eeccCCCcccccccccccC
Q psy3344 1123 CSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGF------FMVPAQSSWNYNFMGVRHD 1196 (1282)
Q Consensus 1123 vSftpgS~SL~A~~lT~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQmLLsDrflGf------fmVP~~~~WNy~fmG~~~~ 1196 (1282)
|++..+|++. +++||+++++++||++++ +|+|| | |... +.+|++++++++++|....
T Consensus 85 vaalirSlP~------------eEqPkqiIVtrk~mldpL--evhll--D-fPnI~Ik~sel~lpF~a~mki~k~~d~vl 147 (260)
T 3sbt_A 85 VSALVRSLPK------------EEQPKQIIVTRKAMLDPL--EVHML--D-FPNIAIRPTELRLPFSAAMSIDKLSDVVM 147 (260)
T ss_dssp HHHHHHHSCG------------GGSCSEEEESSGGGHHHH--HHHTT--T-CTTSEEECBSCCCCGGGGGGSHHHHHHHH
T ss_pred HHHHHHcCCH------------hhCCceEEEechHhhhHH--HHHhh--h-CCCceeeccccccCHHHHhhhHHHHHHHH
Confidence 9999998777 899999999999999996 46554 3 3322 5899999999999999999
Q ss_pred CCcceeeecCCccchhhcccCcccccccccC----------CCCCcccccCCCccccCccccCCCCCccceeeeehhhhh
Q psy3344 1197 PNMKYDLQLANPKEFYHEIHRPAHFLNFSSL----------EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKD 1266 (1282)
Q Consensus 1197 ~~~ky~~~L~~P~~Fy~elHRP~hF~~Fs~l----------ed~~~~~l~p~~~~~t~~hhiwp~l~~~~w~~ve~~l~d 1266 (1282)
.+.+.+|.|+|. |.||+.+.|.|+||+|| +++++.||+||++++|+|||+||||||||||+||++|||
T Consensus 148 katep~m~lfnl--YDdWL~siS~~TAFsRLiLiLR~l~vn~~k~k~iL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkD 225 (260)
T 3sbt_A 148 KATEPQMVLFNI--YDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRD 225 (260)
T ss_dssp HCSSCEEEEEET--TTTGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHSSCTTSCCCTTCSSCCCCHHHHHHHHHHHHH
T ss_pred hcCCCceEEEEe--ehhhhhccccHHHHHHHHHHHHHhccCHHHHHHhhCCCCCccccccccCCCCCHHHHHHHHHHHHH
Confidence 999999999998 88899999999999997 789999999999999999999999999999999999999
Q ss_pred hhhhcccccc
Q psy3344 1267 LILADYGKSR 1276 (1282)
Q Consensus 1267 ~il~dy~k~~ 1276 (1282)
|||+||||+-
T Consensus 226 LIl~dy~kk~ 235 (260)
T 3sbt_A 226 LILTEYGRKY 235 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 9
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=100.00 E-value=7.8e-62 Score=506.08 Aligned_cols=219 Identities=55% Similarity=0.806 Sum_probs=204.7
Q ss_pred ccccccCccceeeccceeeeecCCceeeeeecccccCCccccccCCcceeccCCcccceeeeEeeccccccccccccCcc
Q psy3344 1038 DIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEK 1117 (1282)
Q Consensus 1038 ei~~~~~~~~~~f~~qi~wf~ddtn~~rV~~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~~~krl~q~~k~ 1117 (1282)
++++ |+||+++|+|+++||+||+|+|||++|+|+|||++|||+|||||||||+|||+|||||||++|+|||||+|++||
T Consensus 2 ~~l~-s~ny~eLF~n~~~wfvDDtnvYrvt~h~T~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKw 80 (257)
T 3e9l_A 2 PYLS-SQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKW 80 (257)
T ss_dssp EEEC-TTTGGGGGSSSCEEEEECTTSSEEEEEECSSSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHH
T ss_pred Cccc-cccHHHHhcCceEEEEeCCcEEEEEEEeccCCCceeccccceEEEEeCCCCcEEEEEEEhhhcccchHHHHHHHH
Confidence 4454 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeccCeeeeeccccCCCcccccccccCCCCCCCCCCCchhhhhhhhccccccCc------eeccCCCccccccc
Q psy3344 1118 TVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGF------FMVPAQSSWNYNFM 1191 (1282)
Q Consensus 1118 ti~~tvSftpgS~SL~A~~lT~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQmLLsDrflGf------fmVP~~~~WNy~fm 1191 (1282)
+.++||++..+|++. +++||+++++++||++|+ +|.|| | |... +.+|++++++++++
T Consensus 81 KtAEEv~alirslP~------------eEqPkqiIVtrk~mldpL--evhll--D-fPnI~Ik~sel~lpF~a~mki~k~ 143 (257)
T 3e9l_A 81 KTAEEVAALIRSLPV------------EEQPKQIIVTRKGMLDPL--EVHLL--D-FPNIVIKGSELQLPFQACLKVEKF 143 (257)
T ss_dssp HHHHHHHHHHHHSCG------------GGSCSEEEESSGGGHHHH--HHHTT--T-CTTCEEEEESSCCCGGGGGGSHHH
T ss_pred HHHHHHHHHHHhCCH------------hhCCceEEEechHhhhHH--HHHhh--h-CCCceeeccccccCHHHHhhhHHH
Confidence 999999999998777 899999999999999997 36554 3 3332 57899999999999
Q ss_pred ccccCCCcceeeecCCccchhhcccCcccccccccC----------CCCCcccccCCCccccCccccCCCCCccceeeee
Q psy3344 1192 GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSL----------EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVE 1261 (1282)
Q Consensus 1192 G~~~~~~~ky~~~L~~P~~Fy~elHRP~hF~~Fs~l----------ed~~~~~l~p~~~~~t~~hhiwp~l~~~~w~~ve 1261 (1282)
|.....+.+.+|.|+|. |.||+.+.|.|+||+|| +++++.||+||++++|+|||+||||||+|||+||
T Consensus 144 ~d~vl~atep~m~lfnl--YDdWL~siS~~TAFsRLiLiLR~l~vn~~ktk~IL~p~~~~~~~~~h~WPslsd~eWi~vE 221 (257)
T 3e9l_A 144 GDLILKATEPQMVLFNL--YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE 221 (257)
T ss_dssp HHHHHHCSSCEEEEEET--TTTGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHTCCSTTCCCCTTCSSCCCCHHHHHHHH
T ss_pred HHHHHhccCCceEEEEe--ehhhhhccccHHHHHHHHHHHHHcccCHHHhhHhhcCCCCccccccccCCCCCHHHHHHHH
Confidence 99999999999999998 88889999999999997 6889999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccc
Q psy3344 1262 VQLKDLILADYGKSR 1276 (1282)
Q Consensus 1262 ~~l~d~il~dy~k~~ 1276 (1282)
++||||||+||||+-
T Consensus 222 i~LkDLIl~dy~k~~ 236 (257)
T 3e9l_A 222 VQLKDLILADYGKKN 236 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999985
No 10
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=100.00 E-value=8.4e-59 Score=476.63 Aligned_cols=206 Identities=56% Similarity=0.829 Sum_probs=191.5
Q ss_pred ceeeccceeeeecCCceeeeeecccccCCccccccCCcceeccCCcccceeeeEeeccccccccccccCcceEEEEeeec
Q psy3344 1047 TFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFT 1126 (1282)
Q Consensus 1047 ~~~f~~qi~wf~ddtn~~rV~~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~~~krl~q~~k~ti~~tvSft 1126 (1282)
+++|+||++||+||+|+|||++|+|+|||++|||+||+||||||+|||+||||||||+|+|||||+|++||+.++||++.
T Consensus 1 ~eLF~n~~~wfvDDtnvYrvt~h~T~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKwKtAEEv~al 80 (222)
T 3enb_A 1 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAAL 80 (222)
T ss_dssp --CCSSSCEEEEECTTSSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGCCSCSCHHHHHHHHHHHHHHHH
T ss_pred CccccCceEEEEeCCcEEEEEEEeccCCCceeecccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeeeccccCCCcccccccccCCCCCCCCCCCchhhhhhhhccccccCc------eeccCCCcccccccccccCCCcc
Q psy3344 1127 PGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGF------FMVPAQSSWNYNFMGVRHDPNMK 1200 (1282)
Q Consensus 1127 pgS~SL~A~~lT~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQmLLsDrflGf------fmVP~~~~WNy~fmG~~~~~~~k 1200 (1282)
.+|++. +++||+++++++||++++ +|.|| | |... +.+|++++++++++|.....+.+
T Consensus 81 irslP~------------eEqPkqiIVtrk~mldpl--evhll--d-fPnI~Ik~sel~lpF~a~mki~k~~d~vl~ate 143 (222)
T 3enb_A 81 IRSLPV------------EEQPKQIIVTRKGMLDPL--EVHLL--D-FPNIVIKGSELQLPFQACLKVEKFGDLILKATE 143 (222)
T ss_dssp HHHSCG------------GGSCSEEEESSGGGHHHH--HHHTT--T-CTTCEEEECCCCCCGGGGGGSHHHHHHHHHCSS
T ss_pred HHhCCH------------hhCCceEEEechHhhhHH--HHHhh--h-CCCceeeccccccCHHHHhhhHHHHHHHHhccC
Confidence 998777 899999999999999997 36554 3 4332 57899999999999999999999
Q ss_pred eeeecCCccchhhcccCcccccccccC----------CCCCcccccCCCccccCccccCCCCCccceeeeehhhhhhhhh
Q psy3344 1201 YDLQLANPKEFYHEIHRPAHFLNFSSL----------EDGDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILA 1270 (1282)
Q Consensus 1201 y~~~L~~P~~Fy~elHRP~hF~~Fs~l----------ed~~~~~l~p~~~~~t~~hhiwp~l~~~~w~~ve~~l~d~il~ 1270 (1282)
.+|.|+|. |.||+.+.|.|+||+|| +++++.||+||++++|+|||+||||||||||+||++||||||+
T Consensus 144 p~m~lfnl--YDdWL~siS~~TAFsRLiLiLR~l~vn~~ktk~IL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~ 221 (222)
T 3enb_A 144 PQMVLFNL--YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILA 221 (222)
T ss_dssp CEEEEEET--TTTGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHTCCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEe--ehhhhhccccHHHHHHHHHHHHHccCCHHHhhhhccCCCCeeccccccCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999997 88889999999999997 6889999999999999999999999999999999999999999
Q ss_pred c
Q psy3344 1271 D 1271 (1282)
Q Consensus 1271 d 1271 (1282)
|
T Consensus 222 d 222 (222)
T 3enb_A 222 D 222 (222)
T ss_dssp -
T ss_pred C
Confidence 8
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.95 E-value=1.1e-29 Score=272.24 Aligned_cols=246 Identities=59% Similarity=0.979 Sum_probs=204.5
Q ss_pred ccccCCchhHhHHHhhhcchhhhcCceeccCccccccceeeecccchhhhhhhhHhhhhhhccccccccccCccccccCC
Q psy3344 955 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSD 1034 (1282)
Q Consensus 955 ~~~F~SKt~wrirai~a~nL~~r~n~Iyv~s~d~~~~~ytyimPkNiLkkfi~iadLR~qiagyLyg~s~~~~~~~~s~~ 1034 (1282)
||+|+||||||+|||+|+|||+|+|||||+|+|+++++++||+|||+|||||+|||+|||+||||||.+|+ +++
T Consensus 1 q~~F~SktdWR~Raisa~nL~lR~~~iyv~s~d~~~~~~t~vlPknllkkFi~IADlrTq~~G~LyG~s~~------d~~ 74 (273)
T 2p8r_A 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPP------DNP 74 (273)
T ss_dssp -----CHHHHHHHHHHHTTGGGGGGSEEECCTTCCSSSCEEEEEHHHHHHHHHTSCSSSCCEEEEEEECCT------TCT
T ss_pred CCcccccchhHHhhhhccccccccccEEECCcccCCCccEEEecHHHHHHHHHHhhccceEEEEEeccCCC------CCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998 478
Q ss_pred cccccccccCccceeeccceeeeecCCceeeeeecccccCCccccccCCcceeccCCcccceeeeEeecccc--------
Q psy3344 1035 HTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA-------- 1106 (1282)
Q Consensus 1035 ~~kei~~~~~~~~~~f~~qi~wf~ddtn~~rV~~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~-------- 1106 (1282)
+||||+| |++.+|.|+-..|+++..++. .. --.++++||||||.+-.
T Consensus 75 ~vkeI~~------------ivipPQ~gt~~sv~~~~~~p~-------~~------~l~dLe~LGWIHTqp~e~~~LSs~D 129 (273)
T 2p8r_A 75 QVKEIRC------------IVLVPQTGSHQQVNLPTQLPD-------HE------LLRDFEPLGWMHTQPNELPQLSPQD 129 (273)
T ss_dssp TEEEEEE------------EECCSBEECSSCEECCSSCCC-------CT------TTTTSEEEEEEEEESSCCSSCCHHH
T ss_pred CeEEEEE------------EEECCccCCCceEECCCcCcc-------hh------hhccccccceEeeCCCCCCCcCHHH
Confidence 8999997 333444455555554433222 11 11477999999997642
Q ss_pred --cccccc----ccC-cceEEEEeeeccCeeeeeccccCCCcccccccccCCCCCCCCCCCchhhhhhhhccccccCcee
Q psy3344 1107 --GQKRLG----QLG-EKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFM 1179 (1282)
Q Consensus 1107 --~~krl~----q~~-k~ti~~tvSftpgS~SL~A~~lT~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQmLLsDrflGffm 1179 (1282)
.|+++- .|+ +++|+++||||||||||+||+|||+||+||++|||++.+|+||+|+|+|||||||||||+||||
T Consensus 130 l~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~sl~af~LT~~G~~Wg~~n~d~~~~~~Gf~p~~~ek~qllLSdr~~Gffl 209 (273)
T 2p8r_A 130 VTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFM 209 (273)
T ss_dssp HHHHHHHHHHCTTCCTTTCEEEEEEEETTEEEEEEEEECHHHHHHHHHCCCCSSCCTTCCGGGEEEEEEEEECSSCCEEE
T ss_pred HHHHHHHHhcccccCCCceEEEEEecCCCCceeEEEEcChHHhhhhhhccccccCCCCCCcchhhheeeeeecccceEEE
Confidence 455662 374 5999999999999999999999999999999999998789999999999999999999999999
Q ss_pred ccCCCcccccccccccCCCcceeeecCCccchhhcccCcccccccccCCCCC
Q psy3344 1180 VPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGD 1231 (1282)
Q Consensus 1180 VP~~~~WNy~fmG~~~~~~~ky~~~L~~P~~Fy~elHRP~hF~~Fs~led~~ 1231 (1282)
||++++|||+|||++|+++|+|+++||+|++||||+|||.||++|+++||++
T Consensus 210 VP~~~~WNY~f~g~~~~~~~~Y~lkl~~P~~FY~e~HRp~HF~~F~~~~~~~ 261 (273)
T 2p8r_A 210 VPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHKPVHFHNFKAFDDPL 261 (273)
T ss_dssp EETTSCCBCTTCGGGCCTTCCCCEEECCCCCTTCGGGSCSCC----------
T ss_pred CCCCCcccccccccccCCCceeeEEeCCchhhcccccchHHhhhHhhhcccc
Confidence 9999999999999999999999999999999999999999999999998754
No 12
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-28 Score=261.07 Aligned_cols=242 Identities=37% Similarity=0.638 Sum_probs=207.9
Q ss_pred cccCCchhHhHHHhhhcchhhhcCceeccCccccccceeeecccchhhhhhhhHhhhhhhccccccccccCccccccCCc
Q psy3344 956 ATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDH 1035 (1282)
Q Consensus 956 ~~F~SKt~wrirai~a~nL~~r~n~Iyv~s~d~~~~~ytyimPkNiLkkfi~iadLR~qiagyLyg~s~~~~~~~~s~~~ 1035 (1282)
|+|+||||||+|||+|+|||+|+|||||+|+|+++++++||+|||+|||||+|||+|||++|||||.+|+ ++++
T Consensus 1 ~~F~SktdWR~Rais~~~L~lR~~~iyv~s~d~~~~~~t~vlPknLlkkFi~IAD~~Tq~cG~LyG~~~~------d~~~ 74 (254)
T 2og4_A 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAK------DHPK 74 (254)
T ss_dssp ----CHHHHHHHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHTSCSSSCCEEEEEEEECS------SCTT
T ss_pred CcccccchhHHhhhhccccccccccEEECCcccCCCCcEEEcCHHHHHHHHHHhhccceEEEEEEccCCC------CCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999997 4678
Q ss_pred ccccccccCccceeeccceeeeecCCceeeeeecccccCCccccccCCcceeccCCcccceeeeEeecccc---------
Q psy3344 1036 TQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA--------- 1106 (1282)
Q Consensus 1036 ~kei~~~~~~~~~~f~~qi~wf~ddtn~~rV~~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~--------- 1106 (1282)
+|||+| |++.+|.|+-..|+++..++. +. +.--.++++||||||.+-.
T Consensus 75 v~eI~~------------ivippQ~gt~~s~~~~~~~p~--~~---------~~~l~dLe~LGWIHTqptq~~fLSs~Dl 131 (254)
T 2og4_A 75 VKEIKT------------VVLVPQLGHVGSVQISNIPDI--GD---------LPDTEGLELLGWIHTQTEELKFMAASEV 131 (254)
T ss_dssp EEEEEE------------EECCCEEEETTEEEECCCCCC--TT---------STTCTTCEEEEEEEEESSCCSSCCHHHH
T ss_pred eEEEEE------------EEECCccCCCceEECCCcCcc--cc---------chhhcCCEecceEeeCCCCCcccCHHHH
Confidence 999997 333333455555554443332 10 1012478999999997642
Q ss_pred -ccccccc-cCcceEEEEeeeccCeeeeeccccCCCcccccccccCC-CCCCCCCCCchhhhhhhhccccccCceeccCC
Q psy3344 1107 -GQKRLGQ-LGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDK-GNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQ 1183 (1282)
Q Consensus 1107 -~~krl~q-~~k~ti~~tvSftpgS~SL~A~~lT~~G~~wg~~nkd~-~~~~~Gy~~~~~ekvQmLLsDrflGffmVP~~ 1183 (1282)
.|+++.. |..++|+++|||||||||++||+|||+||+||++|||+ +.+|+||.|+|+|||||||||||+||||||++
T Consensus 132 ~tH~~~~~~~~~eaIaIvcsftpgs~sl~af~LT~~G~~Wg~~n~d~~~~~~~g~~~~~~ek~qlllSdr~~G~flvP~~ 211 (254)
T 2og4_A 132 ATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSG 211 (254)
T ss_dssp HHHHHHHTTTCTTCEEEEEEEETTEEEEEEEEECHHHHHHHHTCCSCCSSCCTTCCGGGEEEEEEEEESSSCCEEEEETT
T ss_pred HHHHHHHHhcCCCeEEEEEecCCCCceeEEEEcChhhhhhhhhcccccccCCCCCCccccceeeEEeecceeeEEECCCC
Confidence 4556633 87799999999999999999999999999999999998 55599999999999999999999999999999
Q ss_pred CcccccccccccCCCcceeeecCCccchhhcccCccccccccc
Q psy3344 1184 SSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSS 1226 (1282)
Q Consensus 1184 ~~WNy~fmG~~~~~~~ky~~~L~~P~~Fy~elHRP~hF~~Fs~ 1226 (1282)
++|||+|||++|++.|+|+++||+|++||||+|||.||++|++
T Consensus 212 ~~WNY~f~g~~~~~~~~y~lkl~~P~~Fy~e~HRp~HF~~F~~ 254 (254)
T 2og4_A 212 NVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSE 254 (254)
T ss_dssp SCCBCTTCGGGCCTTCCCCEEECCCCCTTCGGGSCCCCCCCC-
T ss_pred CcccccccccccCCCceeeEEeCCchhhcccccchhhhhhccC
Confidence 9999999999999999999999999999999999999999974
No 13
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.42 E-value=1.2e-14 Score=151.92 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=89.8
Q ss_pred eeeeccchhhccceEeeecc----ceEEEEEEccCCCCCCcceeEEEEEcCCCccccceeecCCCCCCCCC--cCCCCcc
Q psy3344 590 YTYILPKNVLKKFVTISDLR----AQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPY--LKEMEPL 663 (1282)
Q Consensus 590 ~tyViPKNlLkKFI~ISDlR----tQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~~sV~lp~~LP~h~~--L~dLEpL 663 (1282)
.+++||+|++++|+++||.+ .+|||+|+|+++. ++++|.|++++||.|+..++.++...+.+++ ..+|++|
T Consensus 42 r~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~---~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~v 118 (211)
T 3rzv_A 42 RHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMR---NEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITL 118 (211)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET---TEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEE
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC---CCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEE
Confidence 68999999999999999998 4899999999863 5899999999999999999888764443343 4899999
Q ss_pred eeeecCCCCCCCCChHhHHHHHHhhhcCCCC
Q psy3344 664 GWIHTQPNELPQLSPQDVTSHAKIMADNASW 694 (1282)
Q Consensus 664 GWIHTQ~~El~~Lsp~DVtthAkl~~dN~sW 694 (1282)
||+||+|....++|+.|+.+|++++..++.+
T Consensus 119 GWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~ 149 (211)
T 3rzv_A 119 GWIHTHPTQTAFLSSVDLHTHCSYQMMLPES 149 (211)
T ss_dssp EEEEECTTSCSCCCHHHHHHHHHHHHHCTTC
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhcCCCe
Confidence 9999999999999999999999999876554
No 14
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.36 E-value=5.5e-14 Score=142.90 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=87.9
Q ss_pred eeeeccchhhccceEeeecc----ceEEEEEEccCCCCCCcceeEEEEEcCCCccccceeecCCCCCCCCCc--CCCCcc
Q psy3344 590 YTYILPKNVLKKFVTISDLR----AQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYL--KEMEPL 663 (1282)
Q Consensus 590 ~tyViPKNlLkKFI~ISDlR----tQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~~sV~lp~~LP~h~~L--~dLEpL 663 (1282)
.+++||+|+++||+++||.+ ++|||+|+|..+.+ +++|+|++++||.|+..++.++...+.++++ .+|++|
T Consensus 9 ~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~---~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~v 85 (178)
T 2znr_A 9 RCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN---EFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTL 85 (178)
T ss_dssp CCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT---EEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEE
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC---CeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEE
Confidence 57999999999999999997 59999999998654 6899999999999999999887644445555 799999
Q ss_pred eeeecCCCCCCCCChHhHHHHHHhhhcC
Q psy3344 664 GWIHTQPNELPQLSPQDVTSHAKIMADN 691 (1282)
Q Consensus 664 GWIHTQ~~El~~Lsp~DVtthAkl~~dN 691 (1282)
||+||.|....++|+.|+.+|++.++-.
T Consensus 86 GwyHSHP~~~~~pS~~Dv~tq~~yq~~~ 113 (178)
T 2znr_A 86 GWIHTHPTQTAFLSSVDLHTHCSYQLML 113 (178)
T ss_dssp EEEEECSSSCSCCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999997743
No 15
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.13 E-value=4.9e-12 Score=132.41 Aligned_cols=142 Identities=19% Similarity=0.270 Sum_probs=99.4
Q ss_pred ceeeecccchhhhhhhhHhhhh----hhccccccccccCccccccCCcccccccccCccceeeccceeeeecCCceeeee
Q psy3344 992 GYTYILPKNVLKKFVTISDLRA----QIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVT 1067 (1282)
Q Consensus 992 ~ytyimPkNiLkkfi~iadLR~----qiagyLyg~s~~~~~~~~s~~~~kei~~~~~~~~~~f~~qi~wf~ddtn~~rV~ 1067 (1282)
-.++++|+|+|++|+++|+.++ +++|+|||... +++++|.+ +.+.+| .+.-.+|.
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~---------~~~~~I~~------v~~ppq------~gt~~~v~ 99 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLM---------RNEFTITH------VLIPKQ------SAGSDYCN 99 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEE---------TTEEEEEE------EEECCE------EECSSCEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcC---------CCCEEEEE------EEeCCc------cCCCCcee
Confidence 4789999999999999999995 89999999954 35666664 222222 11111121
Q ss_pred ecccccCCccccccCCcceeccCCcccceeeeEeeccc----------cccccccccCcceEEEEeeeccCeeeeecccc
Q psy3344 1068 IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVW----------AGQKRLGQLGEKTVVITCSFTPGSCSLTAYKL 1137 (1282)
Q Consensus 1068 ~h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w----------~~~krl~q~~k~ti~~tvSftpgS~SL~A~~l 1137 (1282)
.... ..+|-....-|++.+||+||.+- ..|.+..+.....|++.|| |.+++|.||+|
T Consensus 100 ~~~~-----------~e~~~~~~~~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvs--P~~~~lgaFrL 166 (211)
T 3rzv_A 100 TENE-----------EELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCS--PKFQETGFFKL 166 (211)
T ss_dssp ECCH-----------HHHHHHHHHHTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEE--TTTTEEEEEEE
T ss_pred ccCh-----------HHHHHHHhhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEc--CCCCeeeEEEe
Confidence 1100 00111111247899999998742 1333333334578999999 66889999999
Q ss_pred CCCcccccccccCCCCCCCCCCCchhhhhh
Q psy3344 1138 TPSGFEWGRQNTDKGNNPKGYLPSHYERVQ 1167 (1282)
Q Consensus 1138 T~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQ 1167 (1282)
||+||+|+.+.|+.+-.|++..|++|+.|.
T Consensus 167 tp~G~~~~~~c~~~~fhph~~~~~~~~~~~ 196 (211)
T 3rzv_A 167 TDHGLEEISSCRQKGFHPHSKDPPLFCSCS 196 (211)
T ss_dssp CHHHHHHHHHCCCCSSCCCCCSSCSEEECS
T ss_pred ccchhhhhhccccCCcccCCCCCCceEEee
Confidence 999999999999999999999999999874
No 16
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.94 E-value=8.5e-11 Score=119.63 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred eeeecccchhhhhhhhHhhh----hhhccccccccccCccccccCCcccccccccCccceeeccceeeeecCCceeeeee
Q psy3344 993 YTYILPKNVLKKFVTISDLR----AQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDTNVYRVTI 1068 (1282)
Q Consensus 993 ytyimPkNiLkkfi~iadLR----~qiagyLyg~s~~~~~~~~s~~~~kei~~~~~~~~~~f~~qi~wf~ddtn~~rV~~ 1068 (1282)
.++++|+++++||+.+|+.+ .+++|+|||.... ++++|++ + +..++.+.-.++..
T Consensus 9 ~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~---------~~~~V~~------v------~~~pq~~t~~~~~~ 67 (178)
T 2znr_A 9 RCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTH---------NEFTITH------V------IVPKQSAGPDYCDM 67 (178)
T ss_dssp CCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEET---------TEEEEEE------E------EECCEEEETTEEEE
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecC---------CCeEEEE------E------EeCCcCCCCCeecc
Confidence 67999999999999999998 4899999999543 3556663 1 11222222222221
Q ss_pred cccccCCccccccCCcceeccCCcccceeeeEeecccc----------ccccccccCcceEEEEeeeccCeeeeeccccC
Q psy3344 1069 HKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA----------GQKRLGQLGEKTVVITCSFTPGSCSLTAYKLT 1138 (1282)
Q Consensus 1069 h~t~~gnl~tkPingai~~f~p~tg~l~lkiIHt~~w~----------~~krl~q~~k~ti~~tvSftpgS~SL~A~~lT 1138 (1282)
.... + ++...-.-|++.+||+||-+-. .|+...++....+.+.||++++ .+.||+||
T Consensus 68 ~~~~-------e----~~~~~~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--~~~afrl~ 134 (178)
T 2znr_A 68 ENVE-------E----LFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--DTGIFRLT 134 (178)
T ss_dssp CCHH-------H----HHHHHHHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--EEEEEEEC
T ss_pred CCHH-------H----HHHHHHhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--cceEEEEE
Confidence 1000 0 1111112478899999987431 2333334556889999999996 38999999
Q ss_pred CCcccccccccCCCCCCCCCCCchhhhhh
Q psy3344 1139 PSGFEWGRQNTDKGNNPKGYLPSHYERVQ 1167 (1282)
Q Consensus 1139 ~~G~~wg~~nkd~~~~~~Gy~~~~~ekvQ 1167 (1282)
|.||+|+.+.|+.+-.|+++.|++||+|.
T Consensus 135 ~~g~~~~~~~~~~~f~p~~~~~~~~~~~~ 163 (178)
T 2znr_A 135 NAGMLEVSACKKKGFHPHTKEPRLFSICK 163 (178)
T ss_dssp HHHHHHHHHCCCCSSCCCCCSSCSEEECS
T ss_pred CCcEeeecccCCCCcccCCCCCCceEEec
Confidence 99999999999999999999999999883
No 17
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=72.55 E-value=2.6 Score=40.13 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=51.2
Q ss_pred eeccchhhccceEee--eccceEEEEEEccCCCCCCcceeEEEEEcCCCccccceeecCC-CCCCCCCcCCCCcceeeec
Q psy3344 592 YILPKNVLKKFVTIS--DLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPA-SLPGHPYLKEMEPLGWIHT 668 (1282)
Q Consensus 592 yViPKNlLkKFI~IS--DlRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~~sV~lp~-~LP~h~~L~dLEpLGWIHT 668 (1282)
..||+.++.+++.-| ..--.+||+|.|... .|.-+...|..++..+..+-. ..| .+++.+||.|+
T Consensus 4 v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~-------~v~~~~~~p~~~~~~~~~f~~~~~~-----~~~~ivG~~HS 71 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAHPDEFIALLSGSKD-------VMDELIFLPFVSGSVSAVIHLDMLP-----IGMKVFGTVHS 71 (124)
T ss_dssp CEECHHHHHHHHHHHHHHTTSCCEEEEEESTT-------EECEEEECCCCC------------------CCCEEEEEEEE
T ss_pred EEEcHHHHHHHHHHHHhcCCCeeEEEEecccC-------EEEEEEECCCCCCCcCceeeeeecc-----CCCEEEEEEEE
Confidence 457777777776554 334589999999952 223333344555543222211 111 57999999999
Q ss_pred CCCCCCCCChHhHHHHH
Q psy3344 669 QPNELPQLSPQDVTSHA 685 (1282)
Q Consensus 669 Q~~El~~Lsp~DVtthA 685 (1282)
-|.-....|..|+.+.+
T Consensus 72 HP~~~~~PS~~D~~~~~ 88 (124)
T 1oi0_A 72 HPSPSCRPSEEDLSLFT 88 (124)
T ss_dssp ESSSCCSCCHHHHHHHH
T ss_pred CcCCCCccCHHHHHhhh
Confidence 99999999999987644
No 18
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.50 E-value=2 Score=47.30 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=62.1
Q ss_pred eeccceEEEEEEccCCCCCCcceeEEEEEcCCCccccceeecCCCCCCCCCc-------CCCCcceeeecCCCCCCCCCh
Q psy3344 606 SDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYL-------KEMEPLGWIHTQPNELPQLSP 678 (1282)
Q Consensus 606 SDlRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~~sV~lp~~LP~h~~L-------~dLEpLGWIHTQ~~El~~Lsp 678 (1282)
+.....|+|+|-|.-- ...+-+|....-+|+-++...+..-...-..+.+ .++..+||-|+-|.=...+|.
T Consensus 43 ~~~~~eV~GlLlG~~~--~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~ 120 (306)
T 4b4t_V 43 AGVPMEVMGLMLGEFV--DDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSS 120 (306)
T ss_dssp SCSSSCCEEEEEEEEE--TTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCH
T ss_pred CCCCceEEEEEeeEEc--CCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCH
Confidence 4456789999999632 2234566665666888887777532100001111 468899999999887889999
Q ss_pred HhHHHHHHhhhcCCCCCCCCCCC
Q psy3344 679 QDVTSHAKIMADNASWDGVRHDP 701 (1282)
Q Consensus 679 ~DVtthAkl~~dN~sWDg~~~d~ 701 (1282)
.||.+|...-..++.+=++-+||
T Consensus 121 ~Di~tq~~yQ~~~~~~V~lV~Dp 143 (306)
T 4b4t_V 121 VDVNTQKSFEQLNSRAVAVVVDP 143 (306)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHhcCCCcEEEEECC
Confidence 99999998766554443333443
No 19
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=67.66 E-value=1.7 Score=42.85 Aligned_cols=85 Identities=14% Similarity=0.268 Sum_probs=52.4
Q ss_pred eccchhhccceEeee--ccceEEEEEEccCCCCCCcceeEEEEEcCCCc--cc-cceeecCCCCCCCCCc--------CC
Q psy3344 593 ILPKNVLKKFVTISD--LRAQIAGYLYGVSPADNPQVKEIRCIVMPPQW--GT-HQTVHLPASLPGHPYL--------KE 659 (1282)
Q Consensus 593 ViPKNlLkKFI~ISD--lRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~--Gs-~~sV~lp~~LP~h~~L--------~d 659 (1282)
.||++++.+++.-|- ....+||+|.|..-.+ +...|.-+.-.|.. ++ ...+.+ -|. +++ .+
T Consensus 2 ~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~--~~~~v~~~~p~~n~~~~~~~~~f~~---dp~-~~~~~~~~~~~~g 75 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAYPEEGCGFLLGTVTDD--GDNRVAALHRATNRRSEQRTRRYEL---TAD-DYRAADAAAQEQG 75 (153)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTT--SCEEEEEEEESSCCCCCCCSCCSSC---CCC-SHHHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHhcCCcceEEEEEEeeccC--CCeEEEEEEECCCCCCCCCCcEEEE---CHH-HHHHHHHHHHHCC
Confidence 467777777765543 3478999999996421 11233333333443 22 222222 122 221 47
Q ss_pred CCcceeeecCCCCCCCCChHhHHH
Q psy3344 660 MEPLGWIHTQPNELPQLSPQDVTS 683 (1282)
Q Consensus 660 LEpLGWIHTQ~~El~~Lsp~DVtt 683 (1282)
++++||.|+=|.-....|..|+..
T Consensus 76 ~~ivG~yHSHP~~~~~PS~~D~~~ 99 (153)
T 2kcq_A 76 LDVVGVYHSHPDHPARPSATDLEE 99 (153)
T ss_dssp CEEEEEEEECSSSSSSCCHHHHHT
T ss_pred CeEEEEEeCCCCCCCCCCHHHHHh
Confidence 899999999999999999999753
No 20
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=67.39 E-value=3.1 Score=40.60 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=54.9
Q ss_pred eeccchhhccceEeee--ccceEEEEEEccCCCCCCcceeEEEEEcCCCcccc-ceeecCCCCCCCCC--------cCCC
Q psy3344 592 YILPKNVLKKFVTISD--LRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTH-QTVHLPASLPGHPY--------LKEM 660 (1282)
Q Consensus 592 yViPKNlLkKFI~ISD--lRtQIaGyLYG~SP~Dnp~VKEIrCIVLvPQ~Gs~-~sV~lp~~LP~h~~--------L~dL 660 (1282)
..||+.++.+++.-+- ....+||+|.|..-.+. ..|..++..|...+. ..+.+. |. ++ -.++
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~---~~v~~~~p~~n~~~~~~~f~~d---p~-~~~~~~~~~~~~g~ 74 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDD---RWVERVYPLNNLDQSPEHFSMD---PR-EQLTAVKDMRKNGW 74 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTE---EEEEEEECCCCCSCCSSSCCCC---HH-HHHHHHHHHHHHTC
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCC---cEEEEEEECCCcCCCCceEEEC---HH-HHHHHHHHHHHCCC
Confidence 4577788887776554 45789999999964333 334444555543332 211111 11 11 1578
Q ss_pred CcceeeecCCCCCCCCChHhHHH
Q psy3344 661 EPLGWIHTQPNELPQLSPQDVTS 683 (1282)
Q Consensus 661 EpLGWIHTQ~~El~~Lsp~DVtt 683 (1282)
+++||.|+=|.-....|..|+.+
T Consensus 75 ~ivG~~HSHP~~~~~PS~~D~~~ 97 (146)
T 2kks_A 75 VMLGNFHSHPATPARPSAEDKRL 97 (146)
T ss_dssp EEEEEEEEESSSCSSCCHHHHTT
T ss_pred EEEEEEeCCCcCCCCCCHHHHHh
Confidence 99999999999999999999763
Done!