RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3344
(1282 letters)
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain;
3.28A {Saccharomyces cerevisiae}
Length = 565
Score = 407 bits (1047), Expect = e-129
Identities = 128/291 (43%), Positives = 189/291 (64%), Gaps = 10/291 (3%)
Query: 410 WAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEV 469
W + AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E
Sbjct: 163 WLDRISSYT-AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIES 221
Query: 470 QLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQ----- 524
Q++DLIL +YG+K NVN+++LTQ+EI+DIILG I APS +RQ++AE+E E+
Sbjct: 222 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 281
Query: 525 --SQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 582
T T+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+
Sbjct: 282 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 341
Query: 583 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIRCIVMPPQWGTH 642
DD E Y+LPKN+LKKF+ ISD++ Q+A ++YG+S D+P+VKEI+ +V+ PQ G
Sbjct: 342 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 401
Query: 643 QTVHLPASLPGHPY--LKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADN 691
+V + + +E LGWIHTQ EL ++ +V +H+K+ AD
Sbjct: 402 GSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADK 452
Score = 325 bits (834), Expect = 2e-98
Identities = 117/361 (32%), Positives = 179/361 (49%), Gaps = 28/361 (7%)
Query: 875 QVRELFKYNWGFIYTVSLDFYDNMSH--YVNSMEISAPSAQRQQIAEIEKQTKEQ----- 927
Q+R+L +G Y V++ + I APS +RQ++AE+E E+
Sbjct: 222 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEE 281
Query: 928 --SQLTATTTRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSS 985
T T+T+N G+EI+ +++YE+ TF SK EWR AI+ T L+LR +IYVS+
Sbjct: 282 AAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSA 341
Query: 986 DDIKETGYTYILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDH 1045
DD E Y+LPKN+LKKF+ ISD++ Q+A ++Y G + ++I+
Sbjct: 342 DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIY-----GMSAK-DHPKVKEIK----- 390
Query: 1046 QTFIFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVW 1105
T + Q+ V + + + + G I + + T
Sbjct: 391 -TVVLVPQL-GHVGSVQISNIPDIGDLPDTEGLELL-GWIHTQTEELKFMAASEVATH-- 445
Query: 1106 AGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGN-NPKGYLPSHYE 1164
K + I+ TPGS SL+AY LT G++WG +N D N +G+ P+
Sbjct: 446 --SKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFST 503
Query: 1165 RVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNF 1224
Q+LLSDR G F++P+ + WNY FMG + Y+ + P EFY+E+HRP HFL F
Sbjct: 504 HAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQF 563
Query: 1225 S 1225
S
Sbjct: 564 S 564
Score = 139 bits (352), Expect = 1e-34
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 345 YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI 404
++S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKI
Sbjct: 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKI 61
Query: 405 IHTSVWAGQKRLGQLA 420
IHTSVWAGQKRL QLA
Sbjct: 62 IHTSVWAGQKRLSQLA 77
Score = 120 bits (301), Expect = 3e-28
Identities = 50/66 (75%), Positives = 56/66 (84%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 11 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 70
Query: 1109 KRLGQL 1114
KRL QL
Sbjct: 71 KRLSQL 76
Score = 78.7 bits (193), Expect = 5e-15
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
+IL D + + +H+WPS +D++WI +E Q++DLIL +YG+
Sbjct: 192 MILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGR 233
Score = 70.6 bits (172), Expect = 2e-12
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 690 DNASWD----GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFS 729
W+ G + Y+ + P EFY+E+HRP HFL FS
Sbjct: 521 SGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFS 564
Score = 61.7 bits (149), Expect = 1e-09
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQ 39
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++ +K
Sbjct: 154 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKM 192
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A
{Caenorhabditis elegans} PDB: 2p87_A
Length = 273
Score = 303 bits (776), Expect = 3e-94
Identities = 148/280 (52%), Positives = 183/280 (65%), Gaps = 18/280 (6%)
Query: 955 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 1014
TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 1015 IAGYLYDHLVCGRHERVSSDHTQDIRRQ-SDHQTFIFHSQIIWFVDDTNVYRVTIHKTFE 1073
IAG++Y + +V + Q HQ +Q+ H+
Sbjct: 61 IAGFMYGVSPPD-NPQVKEIRCIVLVPQTGSHQQVNLPTQLP------------DHELLR 107
Query: 1074 GNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLGEKTVVITCSFTPGSCSLT 1133
G + QL + + T + GEKTV+ITCSFTPGS SLT
Sbjct: 108 DFEPL----GWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLT 163
Query: 1134 AYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGV 1193
AYKLTPSG+EWG+ NTDKGNNPKGY+P+HYE+VQMLLSDRFLG+FMVP+ WNYNF G
Sbjct: 164 AYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQ 223
Query: 1194 RHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGV 1233
R P MK+D+ L+NPKE+YHE H+P HF NF + +D G
Sbjct: 224 RWSPAMKFDVCLSNPKEYYHEDHKPVHFHNFKAFDDPLGT 263
Score = 252 bits (644), Expect = 4e-76
Identities = 111/145 (76%), Positives = 130/145 (89%)
Query: 552 TATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQ 611
TA+F S+TEWRVRAIS+TNLHLRT HIYV+SDD+K+TGYTYILPKN+LKKF+TISDLR Q
Sbjct: 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQ 60
Query: 612 IAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPN 671
IAG++YGVSP DNPQVKEIRCIV+ PQ G+HQ V+LP LP H L++ EPLGW+HTQPN
Sbjct: 61 IAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPN 120
Query: 672 ELPQLSPQDVTSHAKIMADNASWDG 696
ELPQLSPQDVT+HAK++ DN SWDG
Sbjct: 121 ELPQLSPQDVTTHAKLLTDNISWDG 145
Score = 78.8 bits (194), Expect = 6e-16
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 690 DNASWD----GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGI 737
N W+ G R P MK+D+ L+NPKE+YHE H+P HF NF + +D G
Sbjct: 212 SNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHKPVHFHNFKAFDDPLGT 263
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR
interaction, PRP8P, pseudoenzyme, spliceosome activation;
2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 279 bits (715), Expect = 5e-86
Identities = 95/283 (33%), Positives = 133/283 (46%), Gaps = 43/283 (15%)
Query: 956 ATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQI 1015
SK EWR AI+ T L+LR +IYVS+DD E Y+LPKN+LKKF+ ISD++ Q+
Sbjct: 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQV 60
Query: 1016 AGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFIFHSQIIWFVDDT-NVYRVTIHKTFEG 1074
A ++Y G + ++I+ + V +V V I +
Sbjct: 61 AAFIY-----GMSAK-DHPKVKEIKT-------------VVLVPQLGHVGSVQISNIPD- 100
Query: 1075 NLTTKPINGAIFIFNPRTGQLFLKIIHTS-----------VWAGQKRLGQLGEKTVVITC 1123
I G L IHT V K + I+
Sbjct: 101 ----------IGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI 150
Query: 1124 SFTPGSCSLTAYKLTPSGFEWGRQNTDKGN-NPKGYLPSHYERVQMLLSDRFLGFFMVPA 1182
TPGS SL+AY LT G++WG +N D N +G+ P+ Q+LLSDR G F++P+
Sbjct: 151 FSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPS 210
Query: 1183 QSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFS 1225
+ WNY FMG + Y+ + P EFY+E+HRP HFL FS
Sbjct: 211 GNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFS 253
Score = 224 bits (573), Expect = 1e-66
Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
Query: 553 ATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQI 612
SK EWR AI+ T L+LR +IYVS+DD E Y+LPKN+LKKF+ ISD++ Q+
Sbjct: 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQV 60
Query: 613 AGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPY--LKEMEPLGWIHTQP 670
A ++YG+S D+P+VKEI+ +V+ PQ G +V + + +E LGWIHTQ
Sbjct: 61 AAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQT 120
Query: 671 NELPQLSPQDVTSHAKIMADN 691
EL ++ +V +H+K+ AD
Sbjct: 121 EELKFMAASEVATHSKLFADK 141
Score = 71.9 bits (176), Expect = 8e-14
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 690 DNASWD----GVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFS 729
W+ G + Y+ + P EFY+E+HRP HFL FS
Sbjct: 210 SGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFS 253
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5
snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB:
3e66_A 3e9o_A* 3e9p_A
Length = 260
Score = 161 bits (408), Expect = 1e-44
Identities = 50/99 (50%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 410 WAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEV 469
W + AFSRL L+LRAL N E K+IL D + + +H+WPS +D++WI +E
Sbjct: 163 WLDRISSYT-AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIES 221
Query: 470 QLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPS 508
Q++DLIL +YG+K NVN+++LTQ+EI+DIILG I APS
Sbjct: 222 QMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPS 260
Score = 137 bits (347), Expect = 2e-36
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 345 YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI 404
++S NY ELF+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKI
Sbjct: 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKI 61
Query: 405 IHTSVWAGQKRLGQLA 420
IHTSVWAGQKRL QLA
Sbjct: 62 IHTSVWAGQKRLSQLA 77
Score = 118 bits (297), Expect = 1e-29
Identities = 50/66 (75%), Positives = 56/66 (84%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F++ I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLKIIHTSVWAGQ
Sbjct: 11 LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 70
Query: 1109 KRLGQL 1114
KRL QL
Sbjct: 71 KRLSQL 76
Score = 79.8 bits (196), Expect = 2e-16
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
+IL D + + +H+WPS +D++WI +E Q++DLIL +YG+
Sbjct: 192 MILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGR 233
Score = 60.9 bits (147), Expect = 5e-10
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQ 39
MVLFN+YDDWL ISSYTAFSRL L+LRAL ++ +K
Sbjct: 154 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKM 192
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer,
disease mutation, MRN splicing, nucleus, phosphoprotein,
retinitis pigmentosa; 1.95A {Homo sapiens} SCOP:
c.55.3.14
Length = 257
Score = 157 bits (399), Expect = 2e-43
Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 4/104 (3%)
Query: 343 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL 402
EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL
Sbjct: 1 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL 60
Query: 403 KIIHTSVWAGQKRLGQLA----FSRLILILRALHVNTERTKVIL 442
KIIHTSVWAGQKRLGQLA + ++R+L V + ++I+
Sbjct: 61 KIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 104
Score = 156 bits (395), Expect = 7e-43
Identities = 78/85 (91%), Positives = 83/85 (97%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADY
Sbjct: 173 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADY 232
Query: 480 GKKNNVNVASLTQSEIRDIILGMEI 504
GKKNNVNVASLTQSEIRDIILGMEI
Sbjct: 233 GKKNNVNVASLTQSEIRDIILGMEI 257
Score = 125 bits (314), Expect = 5e-32
Identities = 63/66 (95%), Positives = 65/66 (98%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 12 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 71
Query: 1109 KRLGQL 1114
KRLGQL
Sbjct: 72 KRLGQL 77
Score = 79.3 bits (195), Expect = 3e-16
Identities = 38/42 (90%), Positives = 42/42 (100%)
Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILADYGK
Sbjct: 193 VILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGK 234
Score = 62.8 bits (152), Expect = 1e-10
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQ 39
MVLFNLYDDWLKTISSYTAFSRLILILRALH + +K
Sbjct: 155 MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKV 193
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger,
RNAse H, spliceosome, U5-220K, mutation, mRNA splicing,
nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB:
3lru_A
Length = 222
Score = 141 bits (356), Expect = 5e-38
Identities = 73/95 (76%), Positives = 81/95 (85%), Gaps = 4/95 (4%)
Query: 352 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA 411
GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA
Sbjct: 1 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA 60
Query: 412 GQKRLGQLA----FSRLILILRALHVNTERTKVIL 442
GQKRLGQLA + ++R+L V + ++I+
Sbjct: 61 GQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 95
Score = 125 bits (316), Expect = 1e-32
Identities = 63/66 (95%), Positives = 65/66 (98%)
Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
+F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 3 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 62
Query: 1109 KRLGQL 1114
KRLGQL
Sbjct: 63 KRLGQL 68
Score = 112 bits (280), Expect = 6e-28
Identities = 52/59 (88%), Positives = 57/59 (96%)
Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 478
AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILAD
Sbjct: 164 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222
Score = 78.6 bits (193), Expect = 3e-16
Identities = 35/39 (89%), Positives = 39/39 (100%)
Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILAD 1271
VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILAD
Sbjct: 184 VILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222
Score = 62.8 bits (152), Expect = 6e-11
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 1 MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQ 39
MVLFNLYDDWLKTISSYTAFSRLILILRALH + +K
Sbjct: 146 MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKV 184
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 72.0 bits (176), Expect = 1e-14
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 591 TYILPKNVLKKFVTISDLRAQ----IAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVH 646
+LP+++ KF+ +++ G L G + I +++P Q
Sbjct: 10 CVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN---EFTITHVIVPKQSAGPDYCD 66
Query: 647 LPASLPGHPYL--KEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDP 701
+ ++ LGWIHT P + LS D+ +H + P
Sbjct: 67 MENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSP 123
Score = 51.6 bits (123), Expect = 2e-07
Identities = 26/175 (14%), Positives = 48/175 (27%), Gaps = 28/175 (16%)
Query: 994 TYILPKNVLKKFVTISDLRAQ----IAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQTFI 1049
+LP+++ KF+ +++ G L L +
Sbjct: 10 CVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDM-- 67
Query: 1050 FHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQK 1109
V++ + G + T P A L +HT
Sbjct: 68 ------ENVEELFNVQDQHDLLTLGWIHTHPTQTA---------FLSSVDLHT-----HC 107
Query: 1110 RLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYE 1164
+ + + I CS P ++LT +G KG +P P +
Sbjct: 108 SYQLMLPEAIAIVCS--PKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFS 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 5e-12
Identities = 83/581 (14%), Positives = 173/581 (29%), Gaps = 143/581 (24%)
Query: 752 FRESVVNTQELLDLLVKCENKIQTRIKIGL----NSKMPSRFPPAVFDQELDALEIETVQ 807
+S+++ +E+ +++ + T +M +F V L + ++
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIK 99
Query: 808 KETIHPRKSYKMNSSCADVL-----LFAAYKWNVSRP--------SLLADSKGKFPPVVF 854
E P +M D L +FA K+NVSR +LL K V+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPAKN--VLI 155
Query: 855 YTPKELGGLGMLSMG-HVLIPQV------RELFKYN--W---GFIYTVS--LDFYDNMSH 900
G+L G + V + + W + L+ + +
Sbjct: 156 D--------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 901 YVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHG----DEIITSTTSNYETA 956
++ S I E +L ++ + + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKA--WNAF 262
Query: 957 TFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTIS--DLRAQ 1014
K R T+ ++S D T K++L K++ DL +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 1015 -----------IAGYL---------YDHLVCGRHERV---SSDH-TQDIRRQSDHQTFIF 1050
IA + + H+ C + + S + R+ + +F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 1051 HS---------QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIH 1101
+IWF + V ++K + +L K P+ + + I+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---------QPKESTISIPSIY 432
Query: 1102 TSVWAGQKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPK-GYLP 1160
+ + L +++V Y + P F+ D Y
Sbjct: 433 LELKVKLENEYAL-HRSIV------------DHYNI-PKTFDSD----DLIPPYLDQYFY 474
Query: 1161 SH--YERVQMLLSDRFLGF---FMVPAQSSWNYNFMG--VRHD------PNMKYDL--QL 1205
SH + + +R F F+ ++ F+ +RHD + QL
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFL-------DFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1206 ANPKEFYHEIHRPAHFLNFSSLEDGDGVILKPDKSTITEPH 1246
K + + P + +++ D + K +++ I +
Sbjct: 528 KFYKPYICDND-PKYERLVNAILD---FLPKIEENLICSKY 564
Score = 59.5 bits (143), Expect = 8e-09
Identities = 60/389 (15%), Positives = 118/389 (30%), Gaps = 109/389 (28%)
Query: 1 MVLFNLYDDWLKTISSYTAF---SRLILILR--ALHSDLRWSKQTDVGITHFRSGMSHDE 55
+VL N+ + + AF +++L R + L + T + + H ++ DE
Sbjct: 248 LVLLNVQNAKA-----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 56 ------------DQLIPNLYRYIQP------WES--EFIDSQRVWAEYALKRQEANAQNR 95
Q +P P ES + + + W +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---TII 359
Query: 96 RLTLEDLEDSWDRGIPRINTLFQKDRH----TLAYDKGWRIRTEFKQYQDMNHTNSYGII 151
+L LE + R + ++F H L+ W + +N + Y ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 152 RGLQFASFIVQYYGLVLDLLVLGLQRAS-----------------EMAGPPQMPNDFLTF 194
Q + + L+L V + + PP + F +
Sbjct: 418 EK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 195 QDTATELAHPIRLYCRYVDKVHLF-LRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQ-- 251
+ H HL + H F+ + + F + Q
Sbjct: 477 ------IGH------------HLKNIEHPERMT-------LFRM---VFLD-FRFLEQKI 507
Query: 252 RHDGKLWNLNNYRTDMIQALGGVEG-ILEHTLFKGTYFPTWEGLFCAYGNWFPGSKP--- 307
RHD WN + + +Q L + I ++ P +E L A ++ P +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDND-------PKYERLVNAILDFLPKIEENLI 560
Query: 308 ------LIQQALAKIMKANPALYVLRERI 330
L++ AL M + A++ +
Sbjct: 561 CSKYTDLLRIAL---MAEDEAIFEEAHKQ 586
Score = 54.1 bits (129), Expect = 3e-07
Identities = 79/617 (12%), Positives = 171/617 (27%), Gaps = 175/617 (28%)
Query: 7 YDDWLKTISSYTAFSRLILILRALHSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYI 66
D + + + + RL L SKQ ++ + F E+ L N Y+++
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLL--------SKQEEM-VQKFV------EEVLRIN-YKFL 94
Query: 67 -QPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLA 125
P ++E + Y +R N+ + R+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--------KYNVSRL------------ 134
Query: 126 YDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGL------VLDLLVLGLQRAS 179
++R + L+ A ++ G+ + L V +
Sbjct: 135 -QPYLKLRQALLE---------------LRPAKNVL-IDGVLGSGKTWVALDVC---LSY 174
Query: 180 EMAGPPQMPND-F-LTF--QDTATELAHPIRLYCRYVDKVHLFLRH---TLAYDKGWRIR 232
++ +M F L ++ + ++ +D + I+
Sbjct: 175 KVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQ 231
Query: 233 TEFKQYQVLKQNP--------FWWTHQRHDGKLWNLNNYR------------TDMIQALG 272
E ++ K + K WN N TD + A
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 273 GVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGS--------KPLIQQALAKIMKANPA-- 322
L+H + L Y + P P +A+ ++ A
Sbjct: 286 TTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 323 ---LYVLRERIRKALQLYSSEPTEPYLSSQNYGEL--FSN---------QIIWFVDDTNV 368
+V +++ ++ S EP + + L F +IWF +
Sbjct: 345 DNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 369 YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILIL 428
V ++K + +L K P+ + I + L +
Sbjct: 404 VMVVVNKLHKYSLVEK---------QPKESTIS---IPS---------IYLELKVKLENE 442
Query: 429 RALHVN-TERTKVILKPDKSTITEP-----------HHIWPSLSDDEWIKVEVQLKDLIL 476
ALH + + + D + P HH+ + L ++
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVF 497
Query: 477 ADYG----KKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTT 532
D+ K + + A I + + ++ + I + + + +L
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----YKPYICDND---PKYERLVNAIL 549
Query: 533 RTVNKHGDEIITSTTSN 549
+ K + +I S ++
Sbjct: 550 DFLPKIEENLICSKYTD 566
Score = 45.2 bits (106), Expect = 2e-04
Identities = 68/520 (13%), Positives = 129/520 (24%), Gaps = 142/520 (27%)
Query: 117 FQKDRHTLAYDKGWRI-RTEFKQYQDMNHTNSY--GIIRG------LQFASFIVQYYGLV 167
F+ H Y + F D I+ + + L
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 168 LDLLVLGLQRASEMAGPPQMPN-DFLTFQDTATELAHPIRLYCRYVDKVHLFLRHTLAYD 226
LL + + N FL TE P + Y+++ D
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQR----------D 117
Query: 227 KGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGG-------VEGILE 279
+ + F +Y V + P+ Q L L + +I + G ++ L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 280 HTLFKGTYFPTWEGLFCAYGNWF-------PGSKPLIQQALAKIMKANPALYVLRERIRK 332
+ + F +F W P + + Q L + N + R
Sbjct: 174 YKVQCKMDF----KIF-----WLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSS 221
Query: 333 ALQLYSSEPTEPYLSSQNYGELFSNQ------IIWFVDDTNVYRVTIHKTFEGN----LT 382
++L + L L ++ ++ + + V F + LT
Sbjct: 222 NIKL-RIHSIQAELR-----RLLKSKPYENCLLV--LLN--VQNAKAWNAFNLSCKILLT 271
Query: 383 TKPINGAIFI----------------FNPR-TGQLFLKIIHTSV---------------- 409
T+ F+ P L LK +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 410 ------------WAGQKRLGQLAFSRLI-LILRALHVNTERTK----VILKPDKSTITEP 452
W K + + +I L L R + P + I
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTI 390
Query: 453 --HHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQ 510
IW + + + V +L L + K + I I L + +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-------TISIPSIYLEL-----KVK 438
Query: 511 RQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNY 550
+ + + + + D++I Y
Sbjct: 439 LENEYALHRSIVDHYNIPK------TFDSDDLIPPYLDQY 472
Score = 39.8 bits (92), Expect = 0.006
Identities = 71/492 (14%), Positives = 130/492 (26%), Gaps = 158/492 (32%)
Query: 274 VEGIL-EHTLFKGTYFPTWEGLFCAYGNWFPGSKPLIQQALAKIMKANPALY-VLRERIR 331
++ I+ GT W + + ++Q+ + ++++ N Y L I+
Sbjct: 51 IDHIIMSKDAVSGTLRLFW--TLLSKQ------EEMVQKFVEEVLRIN---YKFLMSPIK 99
Query: 332 KALQLYSSEPTEPYLSSQNYGE----LF-SNQIIWFVDDTNVYRVTIHKTFEGNLTT-KP 385
E +P + ++ Y E L+ NQ+ NV R+ + L +P
Sbjct: 100 T-------EQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRP 149
Query: 386 INGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPD 445
+ I G L + + L
Sbjct: 150 AKNVL--------------ID----------GVLGSGKTWVALDVC-----------LSY 174
Query: 446 KSTITEPHHIWPSLSDDEWIKV-EVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEI 504
K I+ W+ + + +L L +I
Sbjct: 175 KVQCKMDFKIF-------WLNLKNCNSPETVLE---MLQK---------------LLYQI 209
Query: 505 SAPSAQRQQIAEIEKQTKE--QSQLTATTTRTVNKHG----DEIITSTTSNYETATFGSK 558
R + K Q++L ++ +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---------------- 253
Query: 559 TEWRVRAISATNLHLR----TNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQIAG 614
+A +A NL + T V+ D + T+I + T ++++ +
Sbjct: 254 --QNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTL-TPDEVKSLLLK 309
Query: 615 YLYGVSPADNP-QVKEI----------RCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPL 663
YL P D P +V W + V+ L +
Sbjct: 310 YL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-------LTTIIES 361
Query: 664 GWIHTQPNELPQ----LS--PQDVTSHAKIMADNAS--W-DGVRHDPNM------KYDLQ 708
+P E + LS P I S W D ++ D + KY L
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 709 LANPKEFYHEIH 720
PKE I
Sbjct: 418 EKQPKESTISIP 429
Score = 36.8 bits (84), Expect = 0.057
Identities = 80/604 (13%), Positives = 177/604 (29%), Gaps = 163/604 (26%)
Query: 576 NHIYVSSDDIKETGYTYIL----PKNVLKKFVTISDLRAQIAGYLYGVSPADNPQVKEIR 631
+HI +S D + T + + +++KFV ++ +L
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFL--------------- 94
Query: 632 CIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQPNELPQLSPQDVTSHAKIMADN 691
+T S+ Y+++ + L + N+ + +V+ +
Sbjct: 95 -------MSPIKTEQRQPSMMTRMYIEQRDRL-Y-----NDNQVFAKYNVSRLQPYLKLR 141
Query: 692 ASWDGVRHDPN-----M----KYDL--QLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNK 740
+ +R N + K + + + ++ +LN + + ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 741 WNTALIGLMTYFRESVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPA------VF 794
L + + ++ + + + IQ ++ L SK + V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQAELRRLLKSK---PYENCLLVLLNVQ 254
Query: 795 DQE-LDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVV 853
+ + +A + K + R D L A SL S
Sbjct: 255 NAKAWNAFNLSC--KILLTTR-----FKQVTDFLSAATTT----HISLDHHSMT------ 297
Query: 854 FYTPKELGGLGMLS---------------MGH-VLIPQVRELFKYN---WGFIYTVSLDF 894
TP E +L + + + E + W V+
Sbjct: 298 -LTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--- 351
Query: 895 YDNMSHYV-NSMEISAPSAQRQ---QIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTT 950
D ++ + +S+ + P+ R+ +++ + L + V K ++ +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 951 SNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKE------TGYTYILPKNVLKK 1004
Y + + + IS +++L V ++ Y N+ K
Sbjct: 412 HKYSLV----EKQPKESTISIPSIYLELK---VKLENEYALHRSIVDHY------NIPKT 458
Query: 1005 FVTISDLRAQIAGYLYDHLVCGRH-------ERVS--SDHTQDIRRQSDHQTF----IFH 1051
F + + + Y Y H+ G H ER++ D R F I H
Sbjct: 459 FDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFR-------FLEQKIRH 509
Query: 1052 SQIIWF--------VDDTNVYRVTI---HKTFEGNLTTKPINGAIFIFNPRTGQLFLKII 1100
W + Y+ I +E + AI F P+ + +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV------NAILDFLPKIEENLICSK 563
Query: 1101 HTSV 1104
+T +
Sbjct: 564 YTDL 567
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 63.9 bits (155), Expect = 2e-11
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 9/117 (7%)
Query: 591 TYILPKNVLKKFVTISDLRAQ----IAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVH 646
++P + +F+ ++ G L G + I +++P Q +
Sbjct: 43 HVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNE---FTITHVLIPKQSAGSDYCN 99
Query: 647 LPASLPGHPYLKE--MEPLGWIHTQPNELPQLSPQDVTSHAKIMADNASWDGVRHDP 701
+ + LGWIHT P + LS D+ +H + P
Sbjct: 100 TENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSP 156
Score = 44.3 bits (104), Expect = 9e-05
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 1108 QKRLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQ 1167
+ ++V I CS P +KLT G E KG +P P +
Sbjct: 139 HCSYQMMLPESVAIVCS--PKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCS 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 3e-11
Identities = 93/620 (15%), Positives = 167/620 (26%), Gaps = 238/620 (38%)
Query: 52 SHDEDQLIPNLY-RYIQPWESEFIDSQRVWAEYALKRQEANAQNR--RLTLEDLEDSWDR 108
+ DE L +++ ++ S ++ + ++ L L + E+ +
Sbjct: 50 ADDEPTTPAELVGKFLG-----YVSSL-------VEPSKVGQFDQVLNLCLTEFENCY-- 95
Query: 109 GIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYGIIRGLQFASFIVQYYGLVL 168
L D H LA + Q D + +I+ Y
Sbjct: 96 -------LEGNDIHALA--------AKLLQENDTTLVKTKELIK---------NYI---- 127
Query: 169 DLLVLGLQRASEMAGPPQMPND---------------FLTF--Q----DTATELAHPIRL 207
A MA P F Q D EL L
Sbjct: 128 --------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD---L 176
Query: 208 YCRYVDKVHLFLRH---TLA------------YDKGWRIR-------------------- 232
Y Y V ++ TL+ + +G I
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 233 -------TEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKG 285
+ Y V T + + R+ + A G +G++
Sbjct: 237 SCPLIGVIQLAHYVV--------TAKLLG---FTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 286 TYFPTWEGLFCAYGNWFPGSKPLIQQALAKIM--------KANPALYVLRERIRKALQLY 337
T +WE F + +++A+ ++ +A P + + +L+
Sbjct: 286 T--DSWESFFVS-----------VRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 338 SSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFI--FN- 394
P+ P LS N L Q+ +V+ TN + P + I N
Sbjct: 332 EGVPS-PMLSISN---LTQEQVQDYVNKTNSH--------------LPAGKQVEISLVNG 373
Query: 395 PRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHV--NTERTKVIL---KPDKST- 448
+ V +G + L L L LR +++++ K S
Sbjct: 374 AKN---L-------VVSGPPQ--SLY--GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 449 ---ITEPHHIWPS----------LSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQSEI 495
+ P H S D V KD+ + Y + ++ L+ S
Sbjct: 420 FLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 496 RDIILGMEISAPSAQRQQIAEI----EKQTKEQ------------SQLTATTTRTVNKHG 539
I+ I + E T+ + S L T R + G
Sbjct: 477 ERIV------------DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 540 DEIITSTTSNYETAT-FGSK 558
+I + T + +G K
Sbjct: 525 VRVIVAGTLDINPDDDYGFK 544
Score = 62.0 bits (150), Expect = 1e-09
Identities = 98/635 (15%), Positives = 197/635 (31%), Gaps = 210/635 (33%)
Query: 95 RRLTLE--DLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQDMNHTNSYG--- 149
R LTL LE +P T ++ +++ +F + T +
Sbjct: 7 RPLTLSHGSLEHVLL--VP-----------TASFFIASQLQEQFNKILP-EPTEGFAADD 52
Query: 150 --------IIRGLQFASFIVQ-----YYGLVLDLLVLGLQRASEMAGPPQMPNDFLTFQD 196
+ + L + S +V+ + VL+L + + +L D
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN------------CYLEGND 100
Query: 197 TATELAHPIRLYCRYVDKVHLFLRH-------TLAYDKGWRIRTEFKQYQVLKQNPFWWT 249
+H TL K I+ + K+ PF
Sbjct: 101 ------------------IHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKR-PF--- 137
Query: 250 HQRHDGKLWNLNNYRTDMIQAL-GGVEGILEHTLFKGTYFPTWEGLFCAYGNWFPGSKPL 308
++ + L+ + A+ GG +G + YF L+ Y L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGG-QGNTD------DYFEELRDLYQTYH---VLVGDL 187
Query: 309 IQQA---LAKIMKANPALYVLRER---IRKALQLYSSEPTEPYLSSQNYGELFS------ 356
I+ + L+++++ + + I + L+ S+ P + YL S S
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI----PISCPLIGV 243
Query: 357 NQIIWFVDDTNVYRVT---IHKTFEGNLT-TKPINGAIFIFNPRTGQLFL----KIIHTS 408
Q+ +V + T + +G ++ + A+ I + + F K I
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 409 VWAGQKRLGQLAFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVE 468
+ G + A+ L L + E + P P LS
Sbjct: 304 FFIGVR--CYEAYPNTSLPPSILEDSLENNE----------GVPS---PMLS-------- 340
Query: 469 VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLT 528
+++LTQ +++D + P+ ++ +I+ L
Sbjct: 341 ------------------ISNLTQEQVQDYVNKTNSHLPAGKQVEIS-----------L- 370
Query: 529 ATTTRTVNKHGDEIIT-STTSNY--------ETATFG---SKTEWRVRAISATNLHLRTN 576
VN + +++ S Y A G S+ + R + +N L
Sbjct: 371 ------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 577 ---HIYVSSDDIKETGYTYILPKNVLKKFVTI--SDLRAQIAGYLYGVSPADNPQVKE-- 629
H S + + ++ K+++K V+ D++ + Y + +V
Sbjct: 425 SPFH----SHLLVPA--SDLINKDLVKNNVSFNAKDIQIPV----YDTFDGSDLRVLSGS 474
Query: 630 -----IRCIV-MPPQWGTHQTVHLPAS--L---PG 653
+ CI+ +P +W T A+ L PG
Sbjct: 475 ISERIVDCIIRLPVKW--ETTTQFKATHILDFGPG 507
Score = 58.1 bits (140), Expect = 2e-08
Identities = 83/543 (15%), Positives = 156/543 (28%), Gaps = 190/543 (34%)
Query: 709 LANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVVNTQE------- 761
A E FL + S V +++ L +T F + +
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 762 LLDLLVKCENKIQTRIK------IGLNSKMPSRFPPAVFD---------------Q---- 796
LL K + IK I + A+F Q
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 797 ----EL------------DALEI--ETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSR 838
EL D ++ ET+ + + K+ + ++L +W +
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-----EW-LEN 221
Query: 839 PSLLADSKGKFPPVVF--YTPKELGGLGMLSMGHVLI--------P-QVRELFK----YN 883
PS P + P +G++ + H ++ P ++R K ++
Sbjct: 222 PS-------NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 884 WGFIYTVSL-------DFYDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATTTR 936
G + V++ F+ ++ + + R + + L +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKA---ITVLFFIGVRCY------EAYPNTSLPPSILE 325
Query: 937 TVNKHGDEIIT---STTSNYETATFGSKTEWRVRAISATNLHLRTN-HIYVSSDDIKETG 992
++ + + + S + E ++ TN HL + +S
Sbjct: 326 DSLENNEGVPSPMLSIS--------NLTQEQVQDYVNKTNSHLPAGKQVEIS-------- 369
Query: 993 YTYILPKNVLKKFVTISDLRAQIAGY---LYDHLVCG-RHERVSSDHTQD-I----RRQS 1043
L N K V ++G LY L R + S Q I R+
Sbjct: 370 ----L-VNGAKNLV--------VSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 1044 DHQTFI-----FHS-----------------QIIWFVDDTNVYRVTIHKTFEG-NLTTKP 1080
F+ FHS + + D ++ ++ TF+G +L
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD---IQIPVYDTFDGSDLRV-- 470
Query: 1081 INGAIFIFNPRTGQLFLKIIHTSV-WAGQKRLGQLGEKTVVITCS----FTPGSCS---- 1131
++G+I + ++ II V W E T + F PG S
Sbjct: 471 LSGSI------SERIVDCIIRLPVKW----------ETTTQFKATHILDFGPGGASGLGV 514
Query: 1132 LTA 1134
LT
Sbjct: 515 LTH 517
Score = 56.6 bits (136), Expect = 6e-08
Identities = 100/600 (16%), Positives = 173/600 (28%), Gaps = 190/600 (31%)
Query: 527 LTATTTRTVN-KHGDEIITST----TSNYETAT-----FGSKTEWRVRAISA-----TNL 571
+ A +TR + HG + T+++ A+ F +A T
Sbjct: 1 MDAYSTRPLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 572 HLRTNHI-YVSS--DDIKETGYTYILPKNVLKKFVTI----SDLRAQIAGYLYGVSPADN 624
L + YVSS + K + +L L +F +D+ A +A L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTEFENCYLEGNDIHA-LAAKLLQENDTTL 116
Query: 625 PQVKEI-------RCIVMPPQWGTHQTVHLPASLPGH--------------PYLKEM--- 660
+ KE+ R + P + A G+ Y +E+
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 661 ----EPL--GWIHTQPNELPQLS--PQDVTSHAKIMADNASW-DGVRHDPNMKY------ 705
L I L +L D + W + + P+ Y
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 706 ------DLQLAN-----------PKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGL 748
+QLA+ P E + + G+V TA+
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--------GATGHSQGLV----TAVA-- 282
Query: 749 MTYFRESVVNT-QELLDLLVKCENKIQTRIKIGLNSK--MP-SRFPPAVFDQELDA---- 800
+ ++ + + K I IG+ P + PP++ + L+
Sbjct: 283 -----IAETDSWESFFVSVRKA---ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 801 ----LEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKGKFPPVVFYT 856
L I + +E + + K NS L A + +S L + VV
Sbjct: 335 PSPMLSISNLTQEQVQDYVN-KTNSH-----LPAGKQVEIS----LVNGAKNL--VVSGP 382
Query: 857 PKELGGLGMLSMGHVLIP----QVRELF-----KYNWGFIYTVSLDFYDNMSHYVNSMEI 907
P+ L GL L++ P Q R F K++ F+ V+ F+ SH +
Sbjct: 383 PQSLYGLN-LTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVASPFH---SHL---LV- 433
Query: 908 SAPSAQRQQIAEIEKQTKEQSQLT----ATTT-RTVNKHGDEI-------ITSTTSNYET 955
A + + + + T + I I +ET
Sbjct: 434 PASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 956 AT---------FG----------SKTEWR---VRAISATNLHLRTNHIYVSSDDIKETGY 993
T FG + VR I A L + + DD G+
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD------DDY---GF 543
Score = 36.2 bits (83), Expect = 0.099
Identities = 50/331 (15%), Positives = 94/331 (28%), Gaps = 116/331 (35%)
Query: 501 GMEI--SAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYETAT--FG 556
GM++ ++ +A + + K+ +G I+ +N T FG
Sbjct: 1632 GMDLYKTSKAA-QDVWNRADNHFKD-------------TYGFSILDIVINNPVNLTIHFG 1677
Query: 557 SKTEWRVRA-----ISATNLHLRTNHIYVSSD-DIKETGYTYILPKNVLKKFVTISDLRA 610
+ R+R I T + + + + + T YT+ K +L T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQF---T 1732
Query: 611 QIAGYLYGVSPADNPQVKEIRCIVMPPQWGTHQTVHLPASLPGHPYLKEMEPLGWIHTQP 670
Q A L + A ++++ G + A+ GH LG
Sbjct: 1733 QPA--LTLMEKA---AFEDLK------SKG---LIPADATFAGH-------SLG------ 1765
Query: 671 NE----------LP----------------QLSPQD--VTSHAKIMADNASWDGVRHDPN 702
E + P+D S+ ++A N
Sbjct: 1766 -EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG--------R 1816
Query: 703 MKYDLQLANPKEFYHEIHRPAHFLNFSSLEDGDGIVNKWNTALIGLMTYFRESVV-NTQE 761
+ + + + +L +E IVN +N Y V
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWL----VE----IVN-YNVE--N-QQY----VAAGDLR 1860
Query: 762 LLDLLVKC--ENKIQTRIKIGLNSKMPSRFP 790
LD + K+Q +I I ++
Sbjct: 1861 ALDTVTNVLNFIKLQ-KIDI---IELQKSLS 1887
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus,
EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A
{Human herpesvirus 4} PDB: 2w4b_A
Length = 470
Score = 34.7 bits (79), Expect = 0.23
Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 17/131 (12%)
Query: 466 KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQS 525
+++ + D+ S ++ I G++ + + + +E T+ QS
Sbjct: 55 QIQEFSGETGFCDFVSSLVQENDSKDGPSLKSIYWGLQEATDEQRTVLCSYVESMTRGQS 114
Query: 526 Q-----------LTATTTRTVNKHG------DEIITSTTSNYETATFGSKTEWRVRAISA 568
+ ++++ + K+G I++ FG + E V+ I
Sbjct: 115 ENLMWDILRNGIISSSKLLSTIKNGPTKVFEPAPISTNHYFGGPVAFGLRCEDTVKDIVC 174
Query: 569 TNLHLRTNHIY 579
+ +
Sbjct: 175 KLICGDASANR 185
Score = 31.2 bits (70), Expect = 2.7
Identities = 12/105 (11%), Positives = 34/105 (32%), Gaps = 17/105 (16%)
Query: 895 YDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQ-----------LTATTTRTVNKHG- 942
++ ++ + + + +E T+ QS+ ++++ + K+G
Sbjct: 81 GPSLKSIYWGLQEATDEQRTVLCSYVESMTRGQSENLMWDILRNGIISSSKLLSTIKNGP 140
Query: 943 -----DEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIY 982
I++ FG + E V+ I + +
Sbjct: 141 TKVFEPAPISTNHYFGGPVAFGLRCEDTVKDIVCKLICGDASANR 185
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.34
Identities = 6/24 (25%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 327 RERIRK---ALQLYSSEPTEPYLS 347
++ ++K +L+LY+ + + P L+
Sbjct: 19 KQALKKLQASLKLYADD-SAPALA 41
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer cell
activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Length = 120
Score = 31.1 bits (70), Expect = 0.85
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 1112 GQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLS 1171
G + + CSF L +T W R G + P R+ L S
Sbjct: 19 TLEGS-SAFLPCSFNASQGRLAIGSVT-----WFRDEVVPGKEVRNGTPEFRGRLAPLAS 72
Query: 1172 DRFLG 1176
RFL
Sbjct: 73 SRFLH 77
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission,
GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A
{Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 32.1 bits (72), Expect = 1.4
Identities = 19/172 (11%), Positives = 51/172 (29%), Gaps = 5/172 (2%)
Query: 875 QVRELFKYNWGFIYTVSLDFYDNMSHYVNSMEISAPSAQRQQIAEIEKQTKEQSQLTATT 934
QV L ++ T DF + S +++ Q + + +
Sbjct: 494 QVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGI 553
Query: 935 TRTVNKHGDEIITSTTSNYETATFGSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYT 994
+ +K ++T+ E ++ E + + + +L+ + K
Sbjct: 554 MKGGSKEYWFVLTA-----ENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFAL 608
Query: 995 YILPKNVLKKFVTISDLRAQIAGYLYDHLVCGRHERVSSDHTQDIRRQSDHQ 1046
+ + + K +L + + V + D + S+ +
Sbjct: 609 FNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETE 660
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 31.6 bits (71), Expect = 1.8
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 1112 GQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLS 1171
G +G VV+ CSF S+ ++T W + N Y PS V
Sbjct: 26 GFIGT-DVVLHCSFANPLPSVKITQVT-----WQKSTNGSKQNVAIYNPSMGVSVLAPYR 79
Query: 1172 DRF 1174
+R
Sbjct: 80 ERV 82
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 31.0 bits (69), Expect = 2.1
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 1112 GQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLS 1171
Q G V++ CSF+ S Y P W R + RV+
Sbjct: 12 VQEGL-CVLVPCSFSYPWRSW--YSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQ 68
Query: 1172 DRF 1174
RF
Sbjct: 69 GRF 71
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 2.3
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 70 ESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLE-------DSWDRGIPRINTLFQKDR- 121
E E I R W E KR + ++ ++ + W++ R + +K++
Sbjct: 83 EPESI---RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ---RQSEQVEKNKI 136
Query: 122 HTLAYDKGWRIRTEFKQYQDMN 143
+ DK F Q D +
Sbjct: 137 NNRIADK------AFYQQPDAD 152
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase,
1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus
subtilis} SCOP: b.29.1.2 b.29.1.11
Length = 394
Score = 30.4 bits (68), Expect = 4.3
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 1053 QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK--IIHTSVWAGQKR 1110
I W+VD + T N+ + P + ++N +L ++A
Sbjct: 97 YIKWYVDGVLKHTAT------ANIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDW 150
Query: 1111 LGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLP 1160
+ + ++T G + A + + NT KG+
Sbjct: 151 VKYTSNASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTT 200
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 30.0 bits (67), Expect = 5.4
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 632 CIVMPPQWGTHQTVHLPASL-PGHPYLKEMEPL-GWIHTQPNELPQLSPQDVTSHAKIMA 689
+V+PP H +HL + G P + L I L+ DV A
Sbjct: 55 GLVIPPFVEPH--IHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTL 112
Query: 690 DNASWDGVRH 699
+G++H
Sbjct: 113 KWQIANGIQH 122
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH
LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Length = 332
Score = 29.7 bits (67), Expect = 7.0
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 283 FKGTYFPTWEGLFCAYGNWFPGS----KPLIQQALAKIM 317
F G F W LF A + P + P I L IM
Sbjct: 15 FIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIM 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,869,127
Number of extensions: 1205836
Number of successful extensions: 2601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2572
Number of HSP's successfully gapped: 63
Length of query: 1282
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1177
Effective length of database: 3,770,088
Effective search space: 4437393576
Effective search space used: 4437393576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.5 bits)