RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3344
         (1282 letters)



>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 253

 Score =  159 bits (405), Expect = 1e-44
 Identities = 57/75 (76%), Positives = 63/75 (84%)

Query: 346 LSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKII 405
           ++S NY ELF+N I  FVDDTNVYRVT+HKTFEGN+ TK ING IF  NP+TG LFLKII
Sbjct: 1   MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 60

Query: 406 HTSVWAGQKRLGQLA 420
           HTSVWAGQKRL QLA
Sbjct: 61  HTSVWAGQKRLSQLA 75



 Score =  159 bits (403), Expect = 3e-44
 Identities = 45/84 (53%), Positives = 64/84 (76%)

Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADY 479
           AFSRL L+LRAL  N E  K+IL  D +   + +H+WPS +D++WI +E Q++DLIL +Y
Sbjct: 170 AFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEY 229

Query: 480 GKKNNVNVASLTQSEIRDIILGME 503
           G+K NVN+++LTQ+EI+DIILG  
Sbjct: 230 GRKYNVNISALTQTEIKDIILGQN 253



 Score =  137 bits (347), Expect = 7e-37
 Identities = 50/66 (75%), Positives = 56/66 (84%)

Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
            +F++ I  FVDDTNVYRVT+HKTFEGN+ TK ING IF  NP+TG LFLKIIHTSVWAGQ
Sbjct: 9    LFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ 68

Query: 1109 KRLGQL 1114
            KRL QL
Sbjct: 69   KRLSQL 74



 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 18/42 (42%), Positives = 31/42 (73%)

Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGK 1274
            +IL  D +   + +H+WPS +D++WI +E Q++DLIL +YG+
Sbjct: 190  MILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGR 231



 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 1   MVLFNLYDDWLKTISSYTAFSRLILILRALHSDLRWSKQT 40
           MVLFN+YDDWL  ISSYTAFSRL L+LRAL ++   +K  
Sbjct: 152 MVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMI 191


>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score =  143 bits (362), Expect = 3e-39
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 354 LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 413
           LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 1   LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 60

Query: 414 KRLGQLA 420
           KRLGQLA
Sbjct: 61  KRLGQLA 67



 Score =  136 bits (343), Expect = 1e-36
 Identities = 63/66 (95%), Positives = 65/66 (98%)

Query: 1049 IFHSQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 1108
            +F +QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
Sbjct: 1    LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ 60

Query: 1109 KRLGQL 1114
            KRLGQL
Sbjct: 61   KRLGQL 66



 Score =  114 bits (287), Expect = 3e-29
 Identities = 51/58 (87%), Positives = 56/58 (96%)

Query: 420 AFSRLILILRALHVNTERTKVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILA 477
           AFSRLILILRALHVN +R KVILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILA
Sbjct: 162 AFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILA 219



 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 34/38 (89%), Positives = 38/38 (100%)

Query: 1233 VILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILA 1270
            VILKPDK+TITEPHHIWP+L+D+EWIKVEVQLKDLILA
Sbjct: 182  VILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILA 219



 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 36/62 (58%), Positives = 41/62 (66%), Gaps = 7/62 (11%)

Query: 1   MVLFNLYDDWLKTISSYTAFSRLILILRALHSD-------LRWSKQTDVGITHFRSGMSH 53
           MVLFNLYDDWLKTISSYTAFSRLILILRALH +       L+  K T     H    ++ 
Sbjct: 144 MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD 203

Query: 54  DE 55
           +E
Sbjct: 204 EE 205


>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
            {Haemophilus influenzae [TaxId: 727]}
          Length = 253

 Score = 29.1 bits (64), Expect = 3.2
 Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 19/166 (11%)

Query: 1110 RLGQLGEKTVVITCSFTPGSCSLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQML 1169
            +L +LG+   V       G   L +          G  N         +  S        
Sbjct: 22   QLAKLGKSVTVFDNGKKIGRKILMS--------GGGFCNFTNLEVTPAHYLSQNPHFVKS 73

Query: 1170 LSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYDLQLANPKEFYHEIHRPAHFLNFSSLED 1229
               R+  +  +   +     +           +      +    E  +            
Sbjct: 74   ALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDK-----------Y 122

Query: 1230 GDGVILKPDKSTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKS 1275
            G  ++L+ + S +    +        +    + Q K+LI+A  G S
Sbjct: 123  GAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168


>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 138

 Score = 27.0 bits (59), Expect = 8.4
 Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 393 FNPRTGQLFLKIIHTSVWAGQKRLGQLAFSRLILILRALHVNTERTKVI---LKPDKSTI 449
           +N       + I               +   + + +     +  +T+V+   L P     
Sbjct: 17  YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76

Query: 450 TEPHHIWPSLSDDEWIKVEVQLKDLILAD 478
              + I  +   +  +   +   D    D
Sbjct: 77  FTFYGIPYTQIQELALHFTILSFDRFSRD 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,913,873
Number of extensions: 236089
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 20
Length of query: 1282
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1186
Effective length of database: 1,089,516
Effective search space: 1292165976
Effective search space used: 1292165976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)