BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3345
(787 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 322 bits (826), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 233/352 (66%), Gaps = 8/352 (2%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +IL KNLP TL +++ F FG LGRVL+P GIT +VEFL+
Sbjct: 571 LDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPL 630
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGK-----EKEKNEEEGEEGEEEK 549
+A+ AF LAY+KF VPLYLEWAP GVF A +K + EK + E+E E +
Sbjct: 631 EARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGE 690
Query: 550 KENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS 609
K + + G E EE EE+EE E P TL+IKNLNF++TE++++ F K G I S
Sbjct: 691 KASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKS 750
Query: 610 VTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESE 669
T+++KK+ G LSMG+GFV++ E +ALK LQ ++D H++E++ S R +
Sbjct: 751 CTISKKKN--KAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP- 807
Query: 670 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 729
A T RK KQT SKILVRNIPFQA Q E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 808 ALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG 867
Query: 730 FGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYF 781
FGFV+FITK +AK+A ALC STHLYGRRLVLEWA+ V+ +R++T R+F
Sbjct: 868 FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHF 919
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 155/494 (31%), Positives = 234/494 (47%), Gaps = 114/494 (23%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+ +E+ + F GT+TD LK+T +GKFR+F FIG+ E++AQAAL++F+ +++ ++RI
Sbjct: 13 MKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTTRI 72
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG------KKSK 142
VE C + GD +KP++WSK+A SS ++ P QD P TK K +K K
Sbjct: 73 TVEFCKSFGDPSKPRAWSKHAQKSSQPKQ-----PSQDSVPSDTKKDKKKKGPSDLEKLK 127
Query: 143 NDPTFSDFLQLHGK----------DVSKLLPL---------------SNKD-GEEKEEE- 175
D F +FL +H K + LP SN D G+E EEE
Sbjct: 128 EDAKFQEFLSIHQKRTQVATWANDALEAKLPKAKTKASSDYLNFDSDSNSDSGQESEEEP 187
Query: 176 -NEDESNNQ------IAHADISDMEYLKLK------------------------------ 198
ED Q ++SDM+YLK K
Sbjct: 188 AREDPEEEQGLQPKAAVQKELSDMDYLKSKMVRAEVSSEDEDEEDSEDEAVNCEEGSEEE 247
Query: 199 -------TKSKDTAPSDPSVPPVSKA---------PVHKRQY---HTIVVKNLPAGVKKK 239
+ +K S +VP V + PV +++ +T+ ++ P V +K
Sbjct: 248 EEEGSPASPAKQGGVSRGAVPGVLRPQEAAGKVEKPVSQKEPTTPYTVKLRGAPFNVTEK 307
Query: 240 DLKAYFKPLPLASVRTTF------LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYS 293
++ + PL ++R G ++ E+ KAL N+ + G+ + +++
Sbjct: 308 NVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREK 367
Query: 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDL 353
+ +A+ S + + E+ ED+A+SGR+FVRNLSYT +E+DL
Sbjct: 368 QAPTAR-------GPPKSTTPWQGRTLGENEEE----EDLADSGRLFVRNLSYTSSEEDL 416
Query: 354 TKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413
KLF YGPL+E+ PID T K KGFA VTF+ PEHA +AY +DG VF GRMLH++P
Sbjct: 417 EKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 476
Query: 414 ---KPKENEGNVDG 424
K E N G
Sbjct: 477 TIKKEASQEANAPG 490
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK-----TKGFALVTFLMPEHATQ 393
+F++NL+++ TE+ L +F K G + I K+ +K + GF V + PE A +
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCT--ISKKKNKAGVLLSMGFGFVEYKKPEQAQK 781
Query: 394 AYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
A + L G H + G E + S RK QV + ++ ILV+
Sbjct: 782 ALKQLQG--------HTVDGHKLEVRISERATKPALTSTRK----KQVPKKQTTSKILVR 829
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQKNQAKAAFNSLAY- 505
N+P++ +++ LF FG+L V +P + G V+F+ K AK AFN+L +
Sbjct: 830 NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 889
Query: 506 TKFKEVPLYLEWA 518
T L LEWA
Sbjct: 890 THLYGRRLVLEWA 902
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Query: 559 QQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 618
Q+ +VE+ V + +EP T+ ++ FN TE ++ P+A V
Sbjct: 274 QEAAGKVEKPVSQ---KEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGN 330
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSS 678
K+ GY FV + E + +ALK ++ + IE+ R E +A T +
Sbjct: 331 KT-------GYVFVDLSSEEEVKKALKCNRDY-MGGRYIEVFR-----EKQAPTARGPPK 377
Query: 679 NVAKQTG---------------SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 723
+ G ++ VRN+ + + + ++E+LF A+G L + P +
Sbjct: 378 STTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL- 436
Query: 724 SGLHRGFGFVEFITKNEAKRA 744
+ +GF FV F+ A +A
Sbjct: 437 TKKPKGFAFVTFMFPEHAVKA 457
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
S+++V+N+P K+ +LF AFG L L K G R FGF+ F ++ EA+ A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL--KFTKDGKFRKFGFIGFKSEEEAQAAL 59
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 329 FAEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
F++ AE + I +NL ++ + F ++G L V+LP T A+V FL
Sbjct: 574 FSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGIT------AIVEFL 627
Query: 387 MPEHATQAYQHLDGTVFLGRMLHL 410
P A +A++HL + F L+L
Sbjct: 628 EPLEARKAFRHLAYSKFHHVPLYL 651
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 548 EKKENTAEEDNQQGVPEVEENVEEDEEREPEPDT-TLYIKNLNFNSTEDSIRRHFKKCGP 606
EK+ TA + P + E+EE E D+ L+++NL++ S+E+ + + F GP
Sbjct: 366 EKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGP 425
Query: 607 IASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNL 666
++ + K P G+ FV F E +A + R L
Sbjct: 426 LSELHYPIDSLTKKP-----KGFAFVTFMFPEHAVKAYAEVDGQVFQ---------GRML 471
Query: 667 ESEATTVKRKSSNVAKQTGS 686
+T+K+++S A GS
Sbjct: 472 HVLPSTIKKEASQEANAPGS 491
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L A F L S++ T F +IGFK E+ ALN +
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFH 63
Query: 279 KSFWKGKQLNI 289
+SF ++ +
Sbjct: 64 RSFIDTTRITV 74
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 315 bits (808), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 178/357 (49%), Positives = 232/357 (64%), Gaps = 13/357 (3%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +ILVKNLP TL L+ F FG LGRVL+P GIT +VEFL+
Sbjct: 574 LDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPL 633
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSK------GKEKEKNEEEGE---EG 545
+A+ AF LAY+KF VPLYLEWAP GVF+ + K + EK+ E E +G
Sbjct: 634 EARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDG 693
Query: 546 EEEKKENTAEEDNQQGVPEVEENVEEDEEREPE-PDTTLYIKNLNFNSTEDSIRRHFKKC 604
E + EN EE ++EE EE+EE E P TL+IKNLNF++TE+ ++ F K
Sbjct: 694 ETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKV 753
Query: 605 GPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664
G + S ++++KK+ G LSMG+GFV++ E +ALK LQ +D H++E++ S R
Sbjct: 754 GTVKSCSISKKKN--KAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Query: 665 NLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS 724
+ A T+ RK KQT SKILVRNIPFQA E+ ELF FGELK VRLPKKM G+
Sbjct: 812 ATKP-AVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGT 870
Query: 725 GLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYF 781
G HRGFGFV+F+TK +AKRA ALC STHLYGRRLVLEWA+ ++ +R++T +F
Sbjct: 871 GTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTAAHF 927
Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 227/480 (47%), Gaps = 111/480 (23%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+ +E+ + F GT+TD LK+T +GKFR+F FIG+ E++AQ A +FN +++ +SRI
Sbjct: 13 MKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRI 72
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG------KKSK 142
VE C + GD KP++WSK+A S ++ PK PE KD K +K K
Sbjct: 73 TVEFCKSFGDPAKPRAWSKHAQKPSQPKQ----PPKDSTTPEIKKDEKKKKVAGQLEKLK 128
Query: 143 NDPTFSDFLQLH----------------------GKDVSKLLPLSNKDGEEKEEENEDES 180
D F +FL +H K S L + G+E EEE E
Sbjct: 129 EDTEFQEFLSVHQRRAQAATWANDGLDAEPSKGKSKPASDYLNFDSDSGQESEEEGAGED 188
Query: 181 NNQIA--------HADISDMEYLKLKT--------------------------------- 199
+ A ++SDM+YLK K
Sbjct: 189 LEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSS 248
Query: 200 -----KSKDT--------APSDPSVPPVSKA----PVHKRQ---YHTIVVKNLPAGVKKK 239
+ +D+ P+ PP ++A P ++++ HT+ ++ P V +K
Sbjct: 249 ATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEK 308
Query: 240 DLKAYFKPLPLASVRTTF------LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYS 293
++ + PL ++R G ++ F +E+ +AL N+ + G+ + +++
Sbjct: 309 NVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFR-- 366
Query: 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
+ N GA + K W+ + + ED+AESGR+FVRNL YT TE+D
Sbjct: 367 EKNVPTTKGAPKNTT---------KSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEED 417
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412
L KLF KYGPL+E+ PID T K KGFA +TF+ PEHA +AY +DG VF GRMLH++P
Sbjct: 418 LEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 45/210 (21%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK-----TKGFALVTFLMPEHATQ 393
+F++NL++ TE+ L ++F K G + I K+ +K + GF V + PE A +
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSC--SISKKKNKAGVLLSMGFGFVEYRKPEQAQK 789
Query: 394 AYQHLDGTVFLGRMLHLIPGKPKENEGNVDG-KVHCCISERKLDAFNQVVEARSKRI--- 449
A + L G V VDG K+ ISER V AR K++
Sbjct: 790 ALKQLQGHV-------------------VDGHKLEVRISERATKP--AVTLARKKQVPRK 828
Query: 450 -----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQKNQAK 497
ILV+N+P++ +++ LF FG+L V +P + G V+FL K AK
Sbjct: 829 QTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAK 888
Query: 498 AAFNSLAY-TKFKEVPLYLEWAPEGVFAEA 526
AFN+L + T L LEWA V +A
Sbjct: 889 RAFNALCHSTHLYGRRLVLEWADSEVTLQA 918
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 94/237 (39%), Gaps = 46/237 (19%)
Query: 540 EEGEEGEEEKKENTA---EEDN-----QQGVPEVEENVEEDE--------EREPEPDTTL 583
+EG E EEE T E D+ +QG+P ++ E ++EP T+
Sbjct: 237 DEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 584 YIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQA 643
++ FN TE ++ P+A V K+ GY FV F E + QA
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT-------GYIFVDFSNEEEVKQA 349
Query: 644 LKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL-------------- 689
LK + IE+ R E T K N K +IL
Sbjct: 350 LKC-NREYMGGRYIEVFR-----EKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGR 403
Query: 690 --VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
VRN+P+ + + ++E+LF +G L + P + + +GF F+ F+ A +A
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSL-TKKPKGFAFITFMFPEHAVKA 459
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/440 (21%), Positives = 172/440 (39%), Gaps = 96/440 (21%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK-GFALVTFLMPEHATQAY---- 395
+R + VTE ++ + PL V + I + K G+ V F E QA
Sbjct: 298 LRGAPFNVTEKNVMEFL---APLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 396 QHLDGT---VFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILV 452
+++ G VF + + G PK + G++ L + + + V
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRI--------LGENEEEEDLAESGRLFV 406
Query: 453 KNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSLAYT 506
+NLPY + DL+ LF +G L + P +T + F+ A A++ +
Sbjct: 407 RNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQ 466
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSK--GKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE 564
F+ L++ P + EA E + G K ++E ++ K N+A N
Sbjct: 467 VFQGRMLHV--LPSTIKKEASEDASALGSSSYKKKKEAQD-----KANSASSHNW----- 514
Query: 565 VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 624
TL+ + N+ D+I + + + T ++ D ++ G
Sbjct: 515 ----------------NTLF---MGPNAVADAIAQKY-------NATKSQVFDHETKGSV 548
Query: 625 LSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT 684
A++V +L E Q+ ++ R L ++ S A+++
Sbjct: 549 ------------------AVRV----ALGETQL-VQEVRRFLIDNGVSLDSFSQAAAERS 585
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
+ ILV+N+P ++++E F FG L V LP+ + + VEF+ EA++A
Sbjct: 586 KTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITA-------IVEFLEPLEARKA 638
Query: 745 MKALCQSTHLYGRRLVLEWA 764
+ L S + L LEWA
Sbjct: 639 FRHLAYS-KFHHVPLYLEWA 657
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
S+++V+N+P K+ +LF AFG L L K G R FGF+ F ++ EA++A
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL--KFTKDGKFRKFGFIGFKSEEEAQKAQ 59
Query: 746 KALCQS 751
K +S
Sbjct: 60 KHFNKS 65
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L A F L S++ T F +IGFK E+ KA N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 279 KSFWKGKQLNI 289
KSF ++ +
Sbjct: 64 KSFIDTSRITV 74
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 258 bits (658), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 177/514 (34%), Positives = 262/514 (50%), Gaps = 97/514 (18%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
I ++GR+F+RNL YT E+D +LF +YG L EV LPI+ +T + KGFA V F PE+A
Sbjct: 297 IRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAI 356
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCIS-------ERKLDAFNQ----- 440
AY+ DG +F GR+LH++PGKPK++ +D + +RK +A Q
Sbjct: 357 AAYEAQDGKIFQGRLLHILPGKPKKDYNRLDEHDLKNLPLKKQQELKRKAEAAKQQFSWN 416
Query: 441 --------VVEARSKRIILVKN---------------LPYRTLPTDLKALFE-------- 469
V+E+ +K + + K+ L T+ D+K+ FE
Sbjct: 417 SLYMNQDAVMESVAKSMGIKKSELIDPDSSDAAVKQALAEATVIGDVKSYFEKMGVDLAS 476
Query: 470 ----------------PFG--------------DLGRVLVPPYGITGLVEFLQKNQAKAA 499
PFG DL +V++PP G +V F A+AA
Sbjct: 477 FDNKDRDDRVILVKNFPFGTTQPEIAEMFSEYGDLYKVMMPPAGTIAIVIFKHIPDARAA 536
Query: 500 FNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQ 559
F LA+ +FK LYLE P+ + K E +E E K++ +++
Sbjct: 537 FAKLAFRRFKTSILYLEKGPKNLLPNEK------------MESDEVEHVKQDKIVTIEDK 584
Query: 560 QGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 619
+V + D ER T++++KNLNF +T + FK V K D K
Sbjct: 585 LSASDVMDTGSND-ERPATASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSK 643
Query: 620 SPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN 679
+ G+FLSMG+GFV+F ++E+ A K + LD H+++LK SNR + E T K
Sbjct: 644 NKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETK----- 698
Query: 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739
K SKIL++N+PF+A + +V++LF AFG LK VR+PKK + RGF F E+++
Sbjct: 699 --KAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKF--NSESRGFAFAEYVSAK 754
Query: 740 EAKRAMKALCQSTHLYGRRLVLEWAE-EADNVED 772
EA+ AM AL Q THL GRRLVL++A+ +A N E+
Sbjct: 755 EAEHAMSAL-QGTHLLGRRLVLQYAQADASNAEE 787
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 44 VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPK 103
+TDV++ +GK RRF F+G+ ++ A+AA+ YF+ +++ S++I V D P
Sbjct: 38 ITDVKVVRARDGKTRRFGFVGFRSDETAEAAVKYFDTSFINSTKISVAVAMTFTDPNVPL 97
Query: 104 S 104
S
Sbjct: 98 S 98
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 142/367 (38%), Gaps = 68/367 (18%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I V+N + T+ ++ ++F +YG L +V++P A+V F A A+ L
Sbjct: 487 ILVKNFPFGTTQPEIAEMFSEYGDLYKVMMP------PAGTIAIVIFKHIPDARAAFAKL 540
Query: 399 DGTVFLGRMLHLIPGKPKE---NEGNVDGKVH------CCISERKLDA-------FNQVV 442
F +L+L G PK NE +V E KL A N
Sbjct: 541 AFRRFKTSILYLEKG-PKNLLPNEKMESDEVEHVKQDKIVTIEDKLSASDVMDTGSNDER 599
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 502
A + + VKNL ++T + L + F L LV + KN+ K
Sbjct: 600 PATASTSVFVKNLNFKTTS---RVLTDAFKALDGFLVAQVKMKP----DSKNKGKFLSMG 652
Query: 503 LAYTKF--KEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQ 560
+ +F KE E A + + + K + K N + EE E KK
Sbjct: 653 FGFVEFSSKEAA---EIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKK---------- 699
Query: 561 GVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 620
D+ + IKNL F +T+ +++ F G + +V V +K + +
Sbjct: 700 -----------------AIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSE- 741
Query: 621 PGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNV 680
S G+ F ++ + + A+ LQ + L ++ L+ + + + ++R + V
Sbjct: 742 -----SRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQADASNAEEEIERMQATV 796
Query: 681 AKQTGSK 687
+KQ +
Sbjct: 797 SKQAAQR 803
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 654 EHQIELKRSNRNLESEATTVKRKSSN----VAKQTGSKILVRNIPFQAKQSEVEELFKAF 709
E + E K+ N AT V + S V+ + ++ +RN+ + AK+ + +LF +
Sbjct: 265 ESKSEGKKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQY 324
Query: 710 GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
GEL+ V LP +G +GF V+F A A +A Q ++ RL+
Sbjct: 325 GELEEVHLPIN-TKTGQCKGFAHVQFEDPENAIAAYEA--QDGKIFQGRLL 372
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 233 bits (593), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 195/333 (58%), Gaps = 28/333 (8%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LDAF ARS ++LVKN PY T +L +LF PFG+LGR+L+PP G ++EFL
Sbjct: 495 LDAFKNA--ARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAP 552
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTA 554
+ AF+ LAYT+ K LYLE AP VF + ++S GK E +K N
Sbjct: 553 DCRQAFSKLAYTRIKSSILYLEKAPRDVFTTSFKQS-GKP-----------ELAQKVNAV 600
Query: 555 EEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 614
E + V E+ E T+Y+KNLNF++ ++ ++ FK S +
Sbjct: 601 EATTSEKVGT--------EDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRA 652
Query: 615 KKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVK 674
K DPK PG++LSMG+GFV+F + S A+ + LD H++E+K S++ +++ A K
Sbjct: 653 KPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRK 712
Query: 675 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734
+ SS K G+KIL++N+PF+A + +V+ L A+G+L+ VR+PKK S RGF F E
Sbjct: 713 QDSS---KPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--RGFAFAE 767
Query: 735 FITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767
F+T EA AM+AL ++THL GR LVL++A A
Sbjct: 768 FVTAREAANAMRAL-KNTHLLGRHLVLQYASNA 799
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 309 NASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL 368
+ASM + QE ++Q I+E+ R+F+RNL+Y+ EDDL LF +G L +V +
Sbjct: 298 DASMLQKAENNVSEQERNIQL---ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHM 354
Query: 369 PIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
PIDK+T+ KGFA + F + A +AY LD F GR+LH++P K + +
Sbjct: 355 PIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAKARSS 404
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 134/320 (41%), Gaps = 49/320 (15%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLG-MAYIGFKDEKNCNKALNK-N 278
R + ++VKN P G ++L + F P L + G +A I F + +C +A +K
Sbjct: 503 RSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSKLA 562
Query: 279 KSFWKGKQLNIYKYSKD---NSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDI-- 333
+ K L + K +D S K SG + + + A + E EDI
Sbjct: 563 YTRIKSSILYLEKAPRDVFTTSFKQSGKPE-----LAQKVNAVEATTSEKV--GTEDIES 615
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKY-GPLAEVIL--PIDKETDK--TKGFALVTFLMP 388
++ I+V+NL+++ +++ K+F+ G L+ VI P K K + GF V F
Sbjct: 616 LDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDK 675
Query: 389 EHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKR 448
A A ++G V G K+ +S + +DA +V + S +
Sbjct: 676 ASAVAAMHAMNGFVLDGH------------------KLEIKLSHQGVDAAAEVRKQDSSK 717
Query: 449 I----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKA 498
IL+KNLP+ D+++L +G L V VP G EF+ +A
Sbjct: 718 PKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGF-AFAEFVTAREAAN 776
Query: 499 AFNSLAYTKFKEVPLYLEWA 518
A +L T L L++A
Sbjct: 777 AMRALKNTHLLGRHLVLQYA 796
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 44 VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTT-KP 102
+TDV + T EG RRFAFIG+ E+ A A+ Y N +YV +SRI+V + + K
Sbjct: 32 ITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEKL 91
Query: 103 KSWSKYA 109
+ +SKYA
Sbjct: 92 RPYSKYA 98
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 126/338 (37%), Gaps = 83/338 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ V+N Y + ++LT LF +G L +++P A++ FL QA+ L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILIP------PAGTIAIIEFLNAPDCRQAFSKL 561
Query: 399 DGTVFLGRMLHL-------------IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEAR 445
T +L+L GKP+ + KV+ + + +E+
Sbjct: 562 AYTRIKSSILYLEKAPRDVFTTSFKQSGKPE-----LAQKVNAVEATTSEKVGTEDIESL 616
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPF-GDLGRVL-------VPPYGIT---GLVEFLQKN 494
I VKNL + T + + +F+P G L V+ P ++ G VEF K
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKA 676
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTA 554
A AA +++ L ++ + +GV A A+ + + K K
Sbjct: 677 SAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKG---------------- 720
Query: 555 EEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 614
T + IKNL F +T+ ++ G + SV V +
Sbjct: 721 --------------------------TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPK 754
Query: 615 KKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSL 652
K D + G+ F +F T A++ L+N+ L
Sbjct: 755 KFDRS------ARGFAFAEFVTAREAANAMRALKNTHL 786
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 644 LKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGS--------KILVRNIPF 695
LK + DEH L+R + ++A+ +++ +NV++Q + ++ +RN+ +
Sbjct: 276 LKSFDKENNDEH---LERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTY 332
Query: 696 QAKQSEVEELFKAFGELKFVRLP--KKMVGSGLHRGFGFVEFITKNEAKRA 744
+ +++ LF FG+L+ V +P KK + +GF +++F ++A RA
Sbjct: 333 SCAEDDLKSLFGPFGQLEQVHMPIDKK---TNNPKGFAYIDFHDADDAVRA 380
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGM-----------AYIGFKDEKNCNKAL 275
I++KN+P K+ L Y K LP T + + A+IGFK+E++ +KA+
Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63
Query: 276 NK-NKSFWKGKQLNIYK 291
NKS+ + ++ +++
Sbjct: 64 RYLNKSYVETSRIEVHR 80
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 480
+ +KR+ L +NL Y DLK+LF PFG L +V +P
Sbjct: 320 SETKRLFL-RNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 226 bits (577), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 207/349 (59%), Gaps = 29/349 (8%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
RS ++LVKN+P++T +L LF FG+L RV++ P L+E++ N+AK F +LA
Sbjct: 550 RSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPARTIALIEYIHPNEAKVGFKNLA 609
Query: 505 YTKFKEVPLYLEWAPEGVF---AEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQG 561
Y+KF VPLYLEWAPEGVF A KE K ++ EK+ + + +E +
Sbjct: 610 YSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKSSDSSNDKKEVESTTKTAATTTTT 669
Query: 562 VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSP 621
+ N + +YIKNLN+ +T +++ FK +V +A K +PK+P
Sbjct: 670 KKGTDNNTQ-----------FVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNP 718
Query: 622 GQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK----- 676
+ L G+GF++F +++ + +K L SS+D ++I LK S++N + KR+
Sbjct: 719 SERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPEN 778
Query: 677 SSNVAKQTG-------SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 729
S K G SKI+++N+PF++ E+ +LF A+GE++ VR+PKK +G HRG
Sbjct: 779 SKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK--PNGGHRG 836
Query: 730 FGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTN 778
FGFVEF+T+ EAK AM+AL S H YGR LVL++AE+ N++++R++ N
Sbjct: 837 FGFVEFLTEEEAKNAMEALGNS-HFYGRHLVLQYAEQDKNIDELREKAN 884
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 69/92 (75%)
Query: 323 QEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFAL 382
+ D + ED+ ESGRIFVRNLSY+ E+DL K+F K+G ++E+ +PID ++ K+KG A
Sbjct: 347 EHDYTKEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAF 406
Query: 383 VTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414
+ +L+PE+A QA +DG VF GR++H++PGK
Sbjct: 407 ILYLIPENAVQALNDMDGKVFQGRLIHVLPGK 438
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 132/329 (40%), Gaps = 76/329 (23%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQKNQAKAAFNS 502
I V+NL Y T DL+ +F FG + + +P GI ++ + +N A A N
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPEN-AVQALND 421
Query: 503 LAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGE----EGEEEKKENTAEEDN 558
+ F+ +++ P G A AK+ S+ K+ N EG + E+E+K+ T
Sbjct: 422 MDGKVFQGRLIHV--LP-GKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTTSGST 478
Query: 559 QQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 618
N+N+ F + I S R K
Sbjct: 479 H-----------------------------NWNAL-------FMRSDAIVSSLAERYK-- 500
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSS 678
+ GQ L NQ ++ + ++ H I + + LE + ++ +
Sbjct: 501 MTQGQLLDP-------------NQMDLAVRMTLMETHVIN--ETKKFLEDQGVIIQDIGN 545
Query: 679 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738
+K++ + +LV+NIPF+ ++ E+ ELF FGEL V L R +E+I
Sbjct: 546 KGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPA-------RTIALIEYIHP 598
Query: 739 NEAKRAMKALCQSTHLYGRRLVLEWAEEA 767
NEAK K L S + L LEWA E
Sbjct: 599 NEAKVGFKNLAYSK-FHHVPLYLEWAPEG 626
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T ++ K FE+ GTVTD ++ +GK R F FIG+ E A+ AL N T++ +S+I
Sbjct: 15 LTDKRFKEHFEKFGTVTDAKI-IKKDGKSRLFGFIGFSTEQSAKNALS-LNGTFIDTSKI 72
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKL 118
VE + +TT+ + WSKY+ SS+ ++L
Sbjct: 73 VVETATVASETTENRPWSKYSIGSSSNKRL 102
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 138/366 (37%), Gaps = 80/366 (21%)
Query: 324 EDSVQFAEDIAESGR------IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
ED +DI G + V+N+ + E +L +LF K+G L+ V+L
Sbjct: 534 EDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL------SPA 587
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL---------IPGKP-----------KE 417
+ AL+ ++ P A +++L + F L+L +P P
Sbjct: 588 RTIALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKSS 647
Query: 418 NEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 477
+ N +V + + + + +KNL ++T L F+ D V
Sbjct: 648 DSSNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNV 707
Query: 478 LVP------------PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAE 525
+ P G G +EF K A L + + L+ +
Sbjct: 708 NIATKANPKNPSERLPCGF-GFIEFSSKQGAYECIKKLNGSSIDGYEISLKLS------- 759
Query: 526 AKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE-VEENVEEDEEREPEPDTTLY 584
+KNE N E + ++ +PE +++++ + + +P + +
Sbjct: 760 ----------DKNE-----------TNVQEINKRRELPENSKQSIKSNGGQPNKPSSKII 798
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
IKNL F ST IR+ F G I SV + PK P G+GFV+F T E A+
Sbjct: 799 IKNLPFESTIKEIRKLFTAYGEIQSVRI-----PKKPNGG-HRGFGFVEFLTEEEAKNAM 852
Query: 645 KVLQNS 650
+ L NS
Sbjct: 853 EALGNS 858
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +I ++NL + T ++ KLF YG + V +P K +GF V FL E A A
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIP-KKPNGGHRGFGFVEFLTEEEAKNAM 852
Query: 396 QHLDGTVFLGRMLHL 410
+ L + F GR L L
Sbjct: 853 EALGNSHFYGRHLVL 867
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 743
+ ++I V+ +P +E F+ FG + ++ KK G R FGF+ F T+ AK
Sbjct: 2 SNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK---DGKSRLFGFIGFSTEQSAKN 58
Query: 744 AMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYFGTA 784
A+ T + ++V+E A A + R + G++
Sbjct: 59 ALS--LNGTFIDTSKIVVETATVASETTENRPWSKYSIGSS 97
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+I VRN+ + K+ ++E++F FG++ + +P S +G F+ ++ A +A+
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDY-DSKKSKGIAFILYLIPENAVQALN 420
Query: 747 AL 748
+
Sbjct: 421 DM 422
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 222 bits (566), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 263/527 (49%), Gaps = 90/527 (17%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
I E+GR+F+RN+ YT TEDD KLF YG L EV + +D T ++KGFA V F ++A
Sbjct: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKENE--GNVDGKVHCCISERKL--------------- 435
A+ LD +F GR+LH++P K++ D K +R+L
Sbjct: 386 TAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKRKANSAQQTFSWNS 445
Query: 436 -----DAF------------NQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG-DLGR- 476
DA +++++A + + + L ++ D++ FE G DL +
Sbjct: 446 LYMNQDAVLSSVADKLGMKKSELIDAENSSSAVKQALAEASVIGDVRKFFETRGVDLTKF 505
Query: 477 ------------VLVP--PYGIT----------------------GLVEFLQKNQ---AK 497
+LV PYG T G + LQ A+
Sbjct: 506 AQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAAR 565
Query: 498 AAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEED 557
AAF+ ++Y +FK+ +YLE P F + + E E + ++ +E K + A+
Sbjct: 566 AAFSKISYKRFKDGIIYLEKGPSDCFTRDAQGDELVESETDIQKAT--AKEAKISGADLL 623
Query: 558 NQQGVPEVEENVEEDEER----EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 613
Q +P +++ +D++ + P +++IKNLNF++T + FK V
Sbjct: 624 EAQSLPAADKDDHDDDDDDDDVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVK 683
Query: 614 RKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTV 673
K DPK PG+ LSMG+GF +F T+E N + ++ + LD H+++LK S+R + T+
Sbjct: 684 TKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHR----QGTST 739
Query: 674 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 733
SS K+ KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S RGF FV
Sbjct: 740 TNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA--RGFAFV 797
Query: 734 EFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRY 780
EF+ EA+ AM L Q HL GRRLV+E+ E+ + ED+ ++ +
Sbjct: 798 EFLLPKEAENAMDQL-QGVHLLGRRLVMEFVEQ--DPEDVEQQIEKM 841
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 44 VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPK 103
++DV+L +G+ RRFAFIG+ E+ A ++YFN T+V +S+I+V + D P+
Sbjct: 39 LSDVKLMKNRDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPRVPQ 98
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 142/365 (38%), Gaps = 75/365 (20%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP--------LP------------LASVRTTFLGMA 261
R I+VKN P G ++++ F P LP + + R F ++
Sbjct: 513 RDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPSGTIAILQFRDVPAARAAFSKIS 572
Query: 262 YIGFKD-----EKNCNKALNKNKSFWKGKQL-----NIYKYSKDNSAKYSGA-ADDNNNA 310
Y FKD EK + ++ +G +L +I K + AK SGA + +
Sbjct: 573 YKRFKDGIIYLEKGPSDCFTRDA---QGDELVESETDIQKATA-KEAKISGADLLEAQSL 628
Query: 311 SMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL-- 368
+ +D VQ ++ IF++NL+++ T LT EK+ P ++
Sbjct: 629 PAADKDDHDDDDDDDDVQAGPTVS----IFIKNLNFSTTSQQLT---EKFKPFNGFVVAQ 681
Query: 369 ----PIDKETDKT--KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNV 422
P K+ KT GF F E A ++GT+ G L L K +G
Sbjct: 682 VKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQL---KLSHRQG-- 736
Query: 423 DGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-- 480
+ K NQ I+VKNLP+ D+ LF FG L V VP
Sbjct: 737 ---TSTTNASSKKKKKNQ-------GKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKK 786
Query: 481 ----PYGITGLVEFLQKNQAKAAFNSLAYTKF---KEVPLYLEWAPEGVFAEAKEKSKGK 533
G VEFL +A+ A + L + V ++E PE V + ++ ++
Sbjct: 787 FDKSARGF-AFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDPEDVEQQIEKMTRKV 845
Query: 534 EKEKN 538
+K+ N
Sbjct: 846 KKQVN 850
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725
+E+ + + KS ++TG ++ +RNI + A + + +LF +GEL+ V + +G
Sbjct: 311 VETSQESEEEKSLKKIRETG-RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVD-TRTG 368
Query: 726 LHRGFGFVEFITKNEAKRAMKAL 748
+GF +V F + A A L
Sbjct: 369 QSKGFAYVLFKNADNAATAFVEL 391
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 190/347 (54%), Gaps = 21/347 (6%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
RS+ ILVKN+PY T L LF P G L RVL+PP G G+VEF A AF +LA
Sbjct: 414 RSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMDAGRAFKALA 473
Query: 505 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE 564
Y + LYLE P G+F + E G E+K+E A + + E
Sbjct: 474 YRRLGNAVLYLEKGPVGMF----------KSETAPGVGPISTEQKREEEA-----KALAE 518
Query: 565 VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 624
E++ E + E +TL++K LNF +T ++ + V K DPK PG+
Sbjct: 519 KVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEK 578
Query: 625 LSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT 684
LSMGYGFV F T+E+ +ALK L+ +D +E+K + R E + T K + K
Sbjct: 579 LSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGKTK 638
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV----GSGLHRGFGFVEFITKNE 740
+K+LV+N+PF+A + +V ELF A+G+LK +RLP+K V G+ RGF F+EF T E
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
A RAM+AL + THL GR LVL+WA E + V DI+ + G G+
Sbjct: 699 AARAMEAL-KHTHLLGRHLVLQWANEGEEV-DIKGLREKVKGEVRGM 743
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
I + R+FVRNL++ T + L+ F YG + E LP+ + T + G A + F E A
Sbjct: 217 ILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDAL 276
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKENE-------GNVDGKV 426
AY+ LD T+F GR+LH++PG+ K + G VDGKV
Sbjct: 277 AAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVDGKV 317
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 242 KAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSF-WKGKQLNIYKYSKDNSAKY 300
+ KP P +G ++GFK ++ KAL + F GK L + K+++
Sbjct: 565 RVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEV-KFAQ------ 617
Query: 301 SGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY 360
GA DD + + KS ++ V+NL + T+ D+ +LF Y
Sbjct: 618 RGAEDDRETKKGGDAEGGKTKST--------------KVLVKNLPFEATKKDVRELFSAY 663
Query: 361 GPLAEVIL-----PIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
G L + L P T+GFA + F A +A + L T LGR L L
Sbjct: 664 GQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARAMEALKHTHLLGRHLVL 718
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 123/574 (21%), Positives = 212/574 (36%), Gaps = 70/574 (12%)
Query: 25 FIYKITQEQLKAKFEEKGTVTDVQLKYT-TEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
+ T E L + F G + + L + T G+ AF+ +H + A AA + T +
Sbjct: 228 LAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKALDKT-I 286
Query: 84 FSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKN 143
F R+ L KP A K + K+D K K+ +
Sbjct: 287 FQGRL----LHVLPGRAKPGQEGAAAGSGVVDGK---VLGKRDEGRGEVKSKVDAKRKQE 339
Query: 144 DPTFSDFLQLHGKDVSKLLPLSNKDGEEKEEENEDESNNQIAHADISDMEYLKLKTKSKD 203
++ L+ + ++++ G K E +S N +++ ++ K +
Sbjct: 340 SAKGVNWASLYMNSDAVAASVADRMGISKSELLNADSGNSAVKLALAETTVIEETKKYFE 399
Query: 204 TAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP--------LPLASVRT 255
A + S P R TI+VKN+P G + L F P LP A
Sbjct: 400 EA----GIVLESLQPRVPRSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGT-- 453
Query: 256 TFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI 315
+ + F++ + +A K ++ + +Y S A S E
Sbjct: 454 ----LGVVEFENHMDAGRAF-KALAYRRLGNAVLYLEKGPVGMFKSETAPGVGPISTEQK 508
Query: 316 KAKHWKSQEDSVQF----AEDIAESGR-IFVRNLSYTVTEDDLTKLFEKYG--PLAEVIL 368
+ + K+ + V+ + E+G +F++ L++T T L + A V +
Sbjct: 509 REEEAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQM 568
Query: 369 PIDKETDKTK---GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
D + K G+ V F E AT+A + L+G G+ L V
Sbjct: 569 KPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLE------------VKFA 616
Query: 426 VHCCISERKLDAFNQVVEARSKRI-ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI 484
+R+ ++K +LVKNLP+ D++ LF +G L + +P +
Sbjct: 617 QRGAEDDRETKKGGDAEGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAV 676
Query: 485 ---TG--------LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGK 533
TG +EF +A A +L +T L L+WA EG + K +
Sbjct: 677 PTSTGAQSTRGFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWANEGEEVDIKGL---R 733
Query: 534 EKEKNEEEG-EEGEEEKKENT----AEEDNQQGV 562
EK K E G E+G + K+ +ED G+
Sbjct: 734 EKVKGEVRGMEDGGDRKRRKLDFKGGKEDEMDGL 767
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)
Query: 551 ENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610
E T E+ ++ E +E + R P TT+ +KN+ + ++ S+ F G + V
Sbjct: 387 ETTVIEETKKYFEEAGIVLESLQPRVPRSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRV 446
Query: 611 TVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKR--------- 661
+ P L G V+F +A K L L + L++
Sbjct: 447 LL-------PPAGTL----GVVEFENHMDAGRAFKALAYRRLGNAVLYLEKGPVGMFKSE 495
Query: 662 ---------SNRNLESEATTVKRKSSNVAKQ------TGSKILVRNIPFQAKQSEVEELF 706
+ + E EA + K ++ +Q GS + ++ + F ++ +
Sbjct: 496 TAPGVGPISTEQKREEEAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVL 555
Query: 707 KAFGELKFVRL-----PKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
F R+ PK+ G L G+GFV F TK A +A+KAL + + G+ L +
Sbjct: 556 SHIPGFSFARVQMKPDPKR-PGEKLSMGYGFVGFKTKEAATKALKAL-EGFEIDGKSLEV 613
Query: 762 EWAEEADNVEDIR 774
++A+ ED R
Sbjct: 614 KFAQR--GAEDDR 624
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 42/283 (14%)
Query: 43 TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVF-SSRIKVEKCSNLGDTTK 101
T+TD +L RRFAF+GY ++AQ ++F+ TY F ++KV+
Sbjct: 54 TITDTKLVPK-----RRFAFVGYKDAEEAQKVKEWFDGTYAFGGGKVKVD---------- 98
Query: 102 PKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPT--FSDFLQ-LHGKDV 158
+ K P + KL+ + K + +K+ + + K +P +F+ + G D
Sbjct: 99 ---FVKDEPLKTG-DKLNR---GEKSKEKRSKEGRDNVQEKQEPNKRLQEFMSVMKGVDP 151
Query: 159 SKLLP---LSNKDGEEKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVS 215
+ P S +G +KE+ + + ++ +D + + + +PS P +S
Sbjct: 152 AMASPEASTSTAEGTKKEKSVKGKEKSEEPEEAEADDDDAAWLRRRQAALEGEPSTPQLS 211
Query: 216 KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKD 267
+ V+NL + L ++F LP++ LG A++ F +
Sbjct: 212 ADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHN 271
Query: 268 EKNCNKALNK-NKSFWKGKQLNIY----KYSKDNSAKYSGAAD 305
++ A +K+ ++G+ L++ K ++ +A SG D
Sbjct: 272 AEDALAAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVD 314
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL F +T +S+ HF G I + + P +G F+QF+ E
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEP-----LGTAFLQFHNAEDALA 277
Query: 643 ALKVLQNS 650
A K L +
Sbjct: 278 AYKALDKT 285
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 659 LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLP 718
L+R LE E +T + + + S++ VRN+ F + F +G + LP
Sbjct: 194 LRRRQAALEGEPSTPQLSADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLP 253
Query: 719 KKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+G G F++F +A A KAL T GR L
Sbjct: 254 VSQT-TGEPLGTAFLQFHNAEDALAAYKAL-DKTIFQGRLL 292
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 190/347 (54%), Gaps = 21/347 (6%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
RS+ ILVKN+PY T L LF P G L RVL+PP G G+VEF A AF +LA
Sbjct: 414 RSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGTLGVVEFENHMDAGRAFKALA 473
Query: 505 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE 564
Y + LYLE P G+F + E G E+K+E A + + E
Sbjct: 474 YRRLGNAVLYLEKGPVGMF----------KSETAPGVGPISTEQKREEEA-----KALAE 518
Query: 565 VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 624
E++ E + E +TL++K LNF +T ++ + V K DPK PG+
Sbjct: 519 KVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEK 578
Query: 625 LSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT 684
LSMGYGFV F T+E+ +ALK L+ +D +E+K + R E + T K + K
Sbjct: 579 LSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGKTK 638
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV----GSGLHRGFGFVEFITKNE 740
+K+LV+N+PF+A + +V ELF A+G+LK +RLP+K V G+ RGF F+EF T E
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
A RAM+AL + THL GR LVL+WA E + V DI+ + G G+
Sbjct: 699 AARAMEAL-KHTHLLGRHLVLQWANEGEEV-DIKGLREKVKGEVRGM 743
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
I + R+FVRNL++ T + L+ F YG + E LP+ + T + G A + F E A
Sbjct: 217 ILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDAL 276
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKENE-------GNVDGKV 426
AY+ LD T+F GR+LH++PG+ K + G VDGKV
Sbjct: 277 AAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVDGKV 317
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 242 KAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSF-WKGKQLNIYKYSKDNSAKY 300
+ KP P +G ++GFK ++ KAL + F GK L + K+++
Sbjct: 565 RVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEV-KFAQ------ 617
Query: 301 SGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY 360
GA DD + + KS ++ V+NL + T+ D+ +LF Y
Sbjct: 618 RGAEDDRETKKGGDAEGGKTKST--------------KVLVKNLPFEATKKDVRELFSAY 663
Query: 361 GPLAEVIL-----PIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
G L + L P T+GFA + F A +A + L T LGR L L
Sbjct: 664 GQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARAMEALKHTHLLGRHLVL 718
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 123/574 (21%), Positives = 212/574 (36%), Gaps = 70/574 (12%)
Query: 25 FIYKITQEQLKAKFEEKGTVTDVQLKYT-TEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
+ T E L + F G + + L + T G+ AF+ +H + A AA + T +
Sbjct: 228 LAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKALDKT-I 286
Query: 84 FSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKN 143
F R+ L KP A K + K+D K K+ +
Sbjct: 287 FQGRL----LHVLPGRAKPGQEGAAAGSGVVDGK---VLGKRDEGRGEVKSKVDAKRKQE 339
Query: 144 DPTFSDFLQLHGKDVSKLLPLSNKDGEEKEEENEDESNNQIAHADISDMEYLKLKTKSKD 203
++ L+ + ++++ G K E +S N +++ ++ K +
Sbjct: 340 SAKGVNWASLYMNSDAVAASVADRMGISKSELLNADSGNSAVKLALAETTVIEETKKYFE 399
Query: 204 TAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP--------LPLASVRT 255
A + S P R TI+VKN+P G + L F P LP A
Sbjct: 400 EA----GIVLESLQPRVPRSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRVLLPPAGT-- 453
Query: 256 TFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI 315
+ + F++ + +A K ++ + +Y S A S E
Sbjct: 454 ----LGVVEFENHMDAGRAF-KALAYRRLGNAVLYLEKGPVGMFKSETAPGVGPISTEQK 508
Query: 316 KAKHWKSQEDSVQF----AEDIAESGR-IFVRNLSYTVTEDDLTKLFEKYG--PLAEVIL 368
+ + K+ + V+ + E+G +F++ L++T T L + A V +
Sbjct: 509 REEEAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQM 568
Query: 369 PIDKETDKTK---GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
D + K G+ V F E AT+A + L+G G+ L V
Sbjct: 569 KPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLE------------VKFA 616
Query: 426 VHCCISERKLDAFNQVVEARSKRI-ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI 484
+R+ ++K +LVKNLP+ D++ LF +G L + +P +
Sbjct: 617 QRGAEDDRETKKGGDAEGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAV 676
Query: 485 ---TG--------LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGK 533
TG +EF +A A +L +T L L+WA EG + K +
Sbjct: 677 PTSTGAQSTRGFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWANEGEEVDIKGL---R 733
Query: 534 EKEKNEEEG-EEGEEEKKENT----AEEDNQQGV 562
EK K E G E+G + K+ +ED G+
Sbjct: 734 EKVKGEVRGMEDGGDRKRRKLDFKGGKEDEMDGL 767
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 44/253 (17%)
Query: 551 ENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610
E T E+ ++ E +E + R P TT+ +KN+ + ++ S+ F G + V
Sbjct: 387 ETTVIEETKKYFEEAGIVLESLQPRVPRSQTTILVKNIPYGTSIQSLTDLFAPHGKLTRV 446
Query: 611 TVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKR--------- 661
+ P L G V+F +A K L L + L++
Sbjct: 447 LL-------PPAGTL----GVVEFENHMDAGRAFKALAYRRLGNAVLYLEKGPVGMFKSE 495
Query: 662 ---------SNRNLESEATTVKRKSSNVAKQ------TGSKILVRNIPFQAKQSEVEELF 706
+ + E EA + K ++ +Q GS + ++ + F ++ +
Sbjct: 496 TAPGVGPISTEQKREEEAKALAEKVESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVL 555
Query: 707 KAFGELKFVRL-----PKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
F R+ PK+ G L G+GFV F TK A +A+KAL + + G+ L +
Sbjct: 556 SHIPGFSFARVQMKPDPKR-PGEKLSMGYGFVGFKTKEAATKALKAL-EGFEIDGKSLEV 613
Query: 762 EWAEEADNVEDIR 774
++A+ ED R
Sbjct: 614 KFAQR--GAEDDR 624
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 42/283 (14%)
Query: 43 TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVF-SSRIKVEKCSNLGDTTK 101
T+TD +L RRFAF+GY ++AQ ++F+ TY F ++KV+
Sbjct: 54 TITDTKLVPK-----RRFAFVGYKDAEEAQKVKEWFDGTYAFGGGKVKVD---------- 98
Query: 102 PKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPT--FSDFLQ-LHGKDV 158
+ K P + KL+ + K + +K+ + + K +P +F+ + G D
Sbjct: 99 ---FVKDEPLKTG-DKLNR---GEKSKEKRSKEGRDNVQEKQEPNKRLQEFMSVMKGVDP 151
Query: 159 SKLLP---LSNKDGEEKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVS 215
+ P S +G +KE+ + + ++ +D + + + +PS P +S
Sbjct: 152 AMASPEASTSTAEGTKKEKSVKGKEKSEEPEEAEADDDDAAWLRRRQAALEGEPSTPQLS 211
Query: 216 KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKD 267
+ V+NL + L ++F LP++ LG A++ F +
Sbjct: 212 ADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHN 271
Query: 268 EKNCNKALNK-NKSFWKGKQLNIY----KYSKDNSAKYSGAAD 305
++ A +K+ ++G+ L++ K ++ +A SG D
Sbjct: 272 AEDALAAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVD 314
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL F +T +S+ HF G I + + P +G F+QF+ E
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEP-----LGTAFLQFHNAEDALA 277
Query: 643 ALKVLQNS 650
A K L +
Sbjct: 278 AYKALDKT 285
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 659 LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLP 718
L+R LE E +T + + + S++ VRN+ F + F +G + LP
Sbjct: 194 LRRRQAALEGEPSTPQLSADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLP 253
Query: 719 KKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+G G F++F +A A KAL T GR L
Sbjct: 254 VSQT-TGEPLGTAFLQFHNAEDALAAYKAL-DKTIFQGRLL 292
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 163/513 (31%), Positives = 247/513 (48%), Gaps = 94/513 (18%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E I ++GR+F+RN+ YT E+D KLF +G L EV + +D T ++KGFA V F ++
Sbjct: 339 EKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKN 398
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKE--------------------------------- 417
A AY LD +F GR+LH++PG+ K+
Sbjct: 399 AVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKELKRKAAASRQTFSW 458
Query: 418 -----NEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG 472
N+ V G V + K +Q+++A + + + L + D++ FE G
Sbjct: 459 NSLYMNQDAVLGSVAAKLGLEK----SQLIDAENSSSAVKQALAEAHVIGDVRKYFESKG 514
Query: 473 -DLGR--------------VLVP--PYGIT----------------------GLVEFLQK 493
DL + +LV P+G T G + +Q
Sbjct: 515 VDLTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQF 574
Query: 494 NQAKAA---FNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKK 550
+A F L+Y +FK+ +YLE P+ F + E +EE E +
Sbjct: 575 RDTTSARAAFTKLSYKRFKDGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPS 634
Query: 551 ENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610
N E N+ V E N DE+ P +++IKNLNF++T ++ FK
Sbjct: 635 SNDLMEANKD-VTEGSSNA-HDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVA 692
Query: 611 TVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEA 670
V K DPK G+ LSMG+GFV+F T+E N + + + +D H+I+LK S+R S++
Sbjct: 693 QVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQA-SQS 751
Query: 671 TTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 730
K KS+ K++G KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S RGF
Sbjct: 752 GNTKTKSN---KKSG-KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSA--RGF 805
Query: 731 GFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763
FVEF+ EA+ AM L HL GRRLV+++
Sbjct: 806 AFVEFLLPKEAENAMDQL-HGVHLLGRRLVMQY 837
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 131/319 (41%), Gaps = 55/319 (17%)
Query: 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL----GMAYIGFKDEKNCNKA 274
++R I+VKN P G +++L F LP + + +A + F+D + A
Sbjct: 526 TNQRDDKVILVKNFPFGTTREELGEMF--LPYGKLERLLMPPAGTIAIVQFRDTTSARAA 583
Query: 275 LNKNKSFWKGKQLNIY--KYSKDNSAKYSGAAD--DNNNASMENIKAKHWKSQEDSVQFA 330
K S+ + K IY + KD K + A D +N +A E + S D ++
Sbjct: 584 FTK-LSYKRFKDGIIYLERGPKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEAN 642
Query: 331 EDIAESG--------------RIFVRNLSYTVTEDDLTKLFEKYGP--LAEV-ILPIDKE 373
+D+ E IF++NL+++ T +LT F+ + +A+V P K
Sbjct: 643 KDVTEGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKH 702
Query: 374 TDKT--KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL-IPGKPKENEGNVDGKVHCCI 430
KT GF V F E A +DGTV G + L + + GN K +
Sbjct: 703 QGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSN--- 759
Query: 431 SERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGI 484
+S +II VKNLP+ D+ LF FG L V VP G
Sbjct: 760 -------------KKSGKII-VKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGF 805
Query: 485 TGLVEFLQKNQAKAAFNSL 503
VEFL +A+ A + L
Sbjct: 806 -AFVEFLLPKEAENAMDQL 823
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 41/197 (20%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK-------------PLPLASVRTTFLGMAYIGFKDEKNCN 272
+I +KNL ++L FK P P +T +G ++ F+ ++ N
Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQAN 723
Query: 273 KALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAED 332
+ A G D + + K H ++ + +
Sbjct: 724 AVI----------------------AAMDGTVIDGHKIQL---KLSHRQASQSGNTKTKS 758
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT-KGFALVTFLMPEHA 391
+SG+I V+NL + T D+ +LF +G L V +P K+ DK+ +GFA V FL+P+ A
Sbjct: 759 NKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVP--KKFDKSARGFAFVEFLLPKEA 816
Query: 392 TQAYQHLDGTVFLGRML 408
A L G LGR L
Sbjct: 817 ENAMDQLHGVHLLGRRL 833
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 186/333 (55%), Gaps = 30/333 (9%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LDAF Q R ILVKN Y T DL+ LFEPFG + R+L+PP G +V F + +
Sbjct: 467 LDAFKQ--RERGNLAILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPD 524
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTA 554
+A+ AF SLAY K + L+LE AP+ +F EA + E
Sbjct: 525 EAQKAFKSLAYRKLGDSILFLEKAPKDLF-EADVPPQNPLPETKAV-------------- 569
Query: 555 EEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 614
QG + ++ + E TL+IKNLNF++T S+ F+ S +
Sbjct: 570 ----SQGFSTADTFAADEGDEEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKT 625
Query: 615 KKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVK 674
K DPK+PGQ LSMG+GF F T+ AL V+ +LD H + ++ S++ +++ +
Sbjct: 626 KPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAE---E 682
Query: 675 RKSSNVAKQTG---SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 731
R+ + AK+ +KI+++N+PFQA + +V LF A+G+L+ VR+PKK S RGFG
Sbjct: 683 RRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSA--RGFG 740
Query: 732 FVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
F +F++ EA+ AM AL ++THL GRRLVLE+A
Sbjct: 741 FADFVSAREAENAMDAL-KNTHLLGRRLVLEFA 772
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E+I S R+FVRNLSY E +L +F +G + E+ + D +KGFA V + P+
Sbjct: 289 ENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDA 348
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPK 416
A +AY++LDG +F GR+LH++P K
Sbjct: 349 AVEAYRNLDGKIFQGRLLHILPASQK 374
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 140/366 (38%), Gaps = 73/366 (19%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I V+N SY +DL KLFE +G + +++P + A+V F P+ A +A++ L
Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQITRLLMP------PSGTIAIVAFARPDEAQKAFKSL 533
Query: 399 DGTVFLGRMLHLIPGKPKE-NEGNVDGKVHCCISERKLDAFNQV---------VEARSKR 448
LG + + PK+ E +V + ++ F+ E +
Sbjct: 534 -AYRKLGDSILFLEKAPKDLFEADVPPQNPLPETKAVSQGFSTADTFAADEGDEEVMATA 592
Query: 449 IILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPP----YGIT-----GLVEFLQKNQAK 497
+ +KNL + T L F P R+ P G T G +F K QA+
Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQ 652
Query: 498 AAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEED 557
AA + L + + +G+ A EE +KE+TA++
Sbjct: 653 AALAVMNGYTLDRHTLVVRASHKGMDA--------------------AEERRKEDTAKKI 692
Query: 558 NQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 617
+ T + IKNL F +T+ +R F G + SV V +K D
Sbjct: 693 AARR-------------------TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFD 733
Query: 618 PKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS 677
+ G+GF F + A+ L+N+ L ++ L+ +N ++R
Sbjct: 734 RSA------RGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANEEAIDAEEEIQRIE 787
Query: 678 SNVAKQ 683
V +Q
Sbjct: 788 KKVGEQ 793
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 23/199 (11%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL---PIDKETDKT--KGFALVTF 385
E++ + +F++NL+++ T L + F + P K +T GF F
Sbjct: 586 EEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADF 645
Query: 386 LMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEAR 445
A A ++G L R ++ K + RK D ++ R
Sbjct: 646 KTKAQAQAALAVMNGYT-LDRHTLVVRASHK--------GMDAAEERRKEDTAKKIAARR 696
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAA 499
+K I++KNLP++ D+++LF +G L V VP G G +F+ +A+ A
Sbjct: 697 TK--IIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGF-GFADFVSAREAENA 753
Query: 500 FNSLAYTKFKEVPLYLEWA 518
++L T L LE+A
Sbjct: 754 MDALKNTHLLGRRLVLEFA 772
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T +QLK FE + VTD + RR F+G+ + AQ A+ YFN TY+ S+I
Sbjct: 15 LTNDQLKKHFETRFHVTDAHVLPK-----RRIGFVGFKSSEAAQQAVSYFNKTYMRMSKI 69
Query: 89 KVE 91
V+
Sbjct: 70 SVD 72
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 668 SEATTVKRKSSNVAK-QTGSKILVRNIPFQAKQSEVEELFKAFGELK--FVRLPKKMVGS 724
++A T +N+ + +++ VRN+ ++ K+SE+E +F FG+++ V + S
Sbjct: 276 TKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTS 335
Query: 725 GLHRGFGFVEFITKNEAKRAMKAL 748
+GF +V++ + A A + L
Sbjct: 336 ---KGFAYVQYADPDAAVEAYRNL 356
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 188/337 (55%), Gaps = 35/337 (10%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LDAF Q R ILVKN Y DL+ LFEP+G + R+L+PP G +VEF + +
Sbjct: 473 LDAFKQ--RERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPD 530
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF--AEAKEKSKGKEKEKNEEEGEEGEEEKKEN 552
+A+ AF LAY K + L+LE AP +F A + S + K +
Sbjct: 531 EAQKAFKGLAYRKVGDSILFLEKAPANLFDATTAPQTSVLETKAVS-------------- 576
Query: 553 TAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 612
QG + ED + EP +TL++KNLNF++T + FK S +
Sbjct: 577 -------QGFSTADTFAAEDGD-EPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARI 628
Query: 613 ARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATT 672
K DPK PG+ LSMG+GFV F T+ AL + LD+H++ ++ SN+ +++
Sbjct: 629 KTKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAE-- 686
Query: 673 VKRKSSNVAKQTG---SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 729
+R+ + AK+ +KI+++N+PFQA + +V LF A+G+L+ VR+PKK S RG
Sbjct: 687 -ERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSA--RG 743
Query: 730 FGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
FGF +F++ EA+ AM AL ++THL GRRLVLE+A E
Sbjct: 744 FGFADFVSAREAENAMDAL-KNTHLLGRRLVLEFANE 779
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E I S R+FVRNL Y +E DL +F K+G + E+ + D + +KGFA V ++ P+
Sbjct: 295 EHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDA 354
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPK 416
A QAY+ LDG F GR++H++P K
Sbjct: 355 AVQAYKELDGKHFQGRLMHILPATAK 380
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 147/369 (39%), Gaps = 74/369 (20%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I V+N SY V DDL KLFE YG + +++P + A+V F P+ A +A++ L
Sbjct: 486 ILVKNFSYGVKVDDLRKLFEPYGQITRLLMP------PSGTIAIVEFARPDEAQKAFKGL 539
Query: 399 ------DGTVFLGRM-LHLIPGKPKENEGNVDGK-VHCCISERKLDAFNQVVEARSKRII 450
D +FL + +L ++ K V S A E +
Sbjct: 540 AYRKVGDSILFLEKAPANLFDATTAPQTSVLETKAVSQGFSTADTFAAEDGDEPVVTSTL 599
Query: 451 LVKNLPYRTLPTDLKALFEPFGDL--GRVLVPP----YGIT-----GLVEFLQKNQAKAA 499
VKNL + T +F+P R+ P G T G V+F K QA+AA
Sbjct: 600 FVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAA 659
Query: 500 FNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQ 559
++ K + L + + + + A EE ++E+TA++
Sbjct: 660 LAAMDGYKLDQHELVVRASNKAMDA--------------------AEERRREDTAKKIAA 699
Query: 560 QGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 619
+ T + IKNL F +T+ +R F G + SV V +K D
Sbjct: 700 RR-------------------TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS 740
Query: 620 SPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN 679
+ G+GF F + A+ L+N+ L ++ L+ +N EA +++
Sbjct: 741 ------ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFAN----EEAVDPEQEIEQ 790
Query: 680 VAKQTGSKI 688
+ K+ G ++
Sbjct: 791 IEKKVGEQL 799
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 310 ASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP 369
AS + + A + +ED+ + + A +I ++NL + T+ D+ LF YG L V +P
Sbjct: 677 ASNKAMDAAEERRREDTAK--KIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP 734
Query: 370 IDKETDKT-KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
K+ D++ +GF F+ A A L T LGR L L
Sbjct: 735 --KKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLVL 774
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
S++ VRN+P+ A +S++E +F FG+++ + + S +GF +V++I + A +A
Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFD-TRSTTSKGFAYVQYIEPDAAVQAY 359
Query: 746 KALCQSTHLYGRRL 759
K L H GR +
Sbjct: 360 KEL-DGKHFQGRLM 372
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 177/323 (54%), Gaps = 25/323 (7%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
R R+ILVKN P+ T +L LF PFG L R+L+PP G +V+F ++AF+ LA
Sbjct: 509 RDDRVILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRDIASGRSAFSKLA 568
Query: 505 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE 564
+ +FK +YLE P+ F +A + E+ E +EEK A + +
Sbjct: 569 FKRFKGTVIYLEKGPKDCFTKAA----------SNEDAMEHDEEKSAKEAGPSSADLLES 618
Query: 565 VEENVEEDEEREPE-----PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK 619
V ED+E E E P +++IKNLNF +T + FK V K DPK
Sbjct: 619 VSSKKTEDKEDEDEQVVDGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPK 678
Query: 620 SPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN 679
+ LSMG+GFV+F T+E + + + +D H+I+LK S+R + + K+K+ N
Sbjct: 679 QKNKVLSMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNA-GSQEKKKAKN 737
Query: 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739
KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S RGF FVEF+
Sbjct: 738 ------GKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSA--RGFAFVEFVLPK 789
Query: 740 EAKRAMKALCQSTHLYGRRLVLE 762
EA+ AM L Q HL GRRLV++
Sbjct: 790 EAENAMDQL-QGVHLLGRRLVMQ 811
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 55/89 (61%)
Query: 325 DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
D Q I ++GR+F+RN+ Y+ TEDD KLF YG L EV + +D T +KGFA V
Sbjct: 313 DEEQAIAKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVL 372
Query: 385 FLMPEHATQAYQHLDGTVFLGRMLHLIPG 413
F PE A QAY LD +F GR+LH++
Sbjct: 373 FAKPEEAVQAYIELDKQIFQGRLLHILAA 401
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 139/325 (42%), Gaps = 67/325 (20%)
Query: 216 KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP--------LP------------LASVRT 255
K+P +R I+VKN P G +++L F P +P +AS R+
Sbjct: 504 KSP-SQRDDRVILVKNFPFGTTREELGELFVPFGKLERLLMPPAGTIAIVQFRDIASGRS 562
Query: 256 TFLGMAYIGFKD-----EKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNA 310
F +A+ FK EK K S + ++ ++ SAK +G + +
Sbjct: 563 AFSKLAFKRFKGTVIYLEKGPKDCFTKAAS-----NEDAMEHDEEKSAKEAGPSSAD--- 614
Query: 311 SMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP--LAEV-I 367
+E++ +K + +ED + D + IF++NL++ T LT F+ + +A+V
Sbjct: 615 LLESVSSKKTEDKEDEDEQVVD-GPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKT 673
Query: 368 LPIDKETDK--TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDG- 424
P K+ +K + GF V F E AT +DGTV +DG
Sbjct: 674 KPDPKQKNKVLSMGFGFVEFRTKEQATAVISAMDGTV-------------------IDGH 714
Query: 425 KVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP---- 480
K+ +S R+ +A +Q + I+VKNLP+ D+ LF FG L V VP
Sbjct: 715 KIQLKLSHRQGNAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFD 774
Query: 481 --PYGITGLVEFLQKNQAKAAFNSL 503
G VEF+ +A+ A + L
Sbjct: 775 KSARGF-AFVEFVLPKEAENAMDQL 798
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 42 GTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTK 101
G +TD+++ EGK RRFAFIGY E A A++YF+ +++++S+I+V+ + D
Sbjct: 37 GLITDLRILKNREGKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMAKSFADPRV 96
Query: 102 PKSW 105
PKS
Sbjct: 97 PKSM 100
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 742
Q ++ +RNI + + + + ++LF +GELK V + +G +GF +V F EA
Sbjct: 322 QKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVD-TRTGNSKGFAYVLFAKPEEAV 380
Query: 743 RAMKALCQSTHLYGRRLVLEWAEE 766
+A L + GR L + A+E
Sbjct: 381 QAYIELDKQI-FQGRLLHILAADE 403
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 535 KEKNEEEGEEGEEEKKENTAEEDNQQGVP--EVEENVEEDEEREPEPDTT--LYIKNLNF 590
+E E+ GEE ++ +EE N Q P E++E + ++E+ + T L+++N+ +
Sbjct: 276 RENGEKVGEEFATNVQDKESEE-NSQATPAEELQEEIPDEEQAIAKIQKTGRLFLRNILY 334
Query: 591 NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQA 643
+STED ++ F G + V VA D ++ S G+ +V F E QA
Sbjct: 335 SSTEDDFKKLFSPYGELKEVHVAV--DTRTGN---SKGFAYVLFAKPEEAVQA 382
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 199/360 (55%), Gaps = 24/360 (6%)
Query: 419 EGNVDGKVHCCISERKLDA-----FNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD 473
E +V G V R +D F +V E R RIILVKN P+ T +L LF PFG
Sbjct: 455 EAHVIGDVRKYFEARGVDLTQFEKFKKVTE-RDDRIILVKNFPHGTTREELAELFLPFGK 513
Query: 474 LGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGK 533
+ R+L+PP G ++++ A+ AF L+Y +FKE LYLE P+ F+ + +G
Sbjct: 514 IERLLMPPSGTIAIIQYRDVPAARGAFTKLSYKRFKEAILYLEKGPKDCFS---REPRGD 570
Query: 534 EKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNST 593
E + + E+ +E KK D P E + P ++++KNLNF++T
Sbjct: 571 ELLEGDAAPEDVKEIKKSVEDVMDADSKTPSSEATAIDG------PTVSIFVKNLNFSTT 624
Query: 594 EDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD 653
+ FK V K DPK+ + LSMG+GF++F T+E + + + +D
Sbjct: 625 SAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVID 684
Query: 654 EHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELK 713
H+I+LK S++ +++ + S K+ KI+V+N+PF+A + +V ELF +FG+LK
Sbjct: 685 GHKIQLKISHKQ-----SSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLK 739
Query: 714 FVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE-EADNVED 772
VR+PKK S RGF FVEF+ +EA+ AM L Q HL GRRLV+++AE E+D+VE+
Sbjct: 740 SVRVPKKFDKSA--RGFAFVEFLLPSEAENAMDQL-QGVHLLGRRLVMQYAEQESDDVEE 796
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 323 QEDSVQFAE----DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
QED V E I +GR+F+RN+ Y TE+D +LF YG L EV + +D T ++K
Sbjct: 283 QEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSK 342
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
GFA V F PEHA AY LD +F GR+LH++P K
Sbjct: 343 GFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAK 380
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 141/333 (42%), Gaps = 60/333 (18%)
Query: 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL----GMAYIGFKDEKNCNKA 274
V +R I+VKN P G +++L F LP + + +A I ++D A
Sbjct: 482 VTERDDRIILVKNFPHGTTREELAELF--LPFGKIERLLMPPSGTIAIIQYRDVPAARGA 539
Query: 275 LNKNKSFWKGKQLNIY--KYSKDN-SAKYSGAADDNNNASMENIKAKHWKSQEDSVQF-- 329
K S+ + K+ +Y K KD S + G +A+ E++K + KS ED +
Sbjct: 540 FTK-LSYKRFKEAILYLEKGPKDCFSREPRGDELLEGDAAPEDVK-EIKKSVEDVMDADS 597
Query: 330 ----AEDIAESG---RIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL------PIDKETDK 376
+E A G IFV+NL+++ T +L EK+ P + ++ P K +DK
Sbjct: 598 KTPSSEATAIDGPTVSIFVKNLNFSTTS---AQLAEKFKPFSGFVVAQVKTKPDPKNSDK 654
Query: 377 --TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDG-KVHCCISER 433
+ GF + F E A +DG V +DG K+ IS +
Sbjct: 655 KLSMGFGFIEFRTKEQAGAVIAAMDGAV-------------------IDGHKIQLKISHK 695
Query: 434 K--LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGIT 485
+ L ++ + + I+VKNLP+ D+ LF FG L V VP G
Sbjct: 696 QSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGF- 754
Query: 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
VEFL ++A+ A + L L +++A
Sbjct: 755 AFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYA 787
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 98/234 (41%), Gaps = 22/234 (9%)
Query: 181 NNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKD 240
+++ D + + ++K +D +D S P S+A +I VKNL
Sbjct: 569 GDELLEGDAAPEDVKEIKKSVEDVMDAD-SKTPSSEATAIDGPTVSIFVKNLNFSTTSAQ 627
Query: 241 LKAYFKPLP---LASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNS 297
L FKP +A V+T D KN +K L+ F + + +
Sbjct: 628 LAEKFKPFSGFVVAQVKTK---------PDPKNSDKKLSMGFGFI---EFRTKEQAGAVI 675
Query: 298 AKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLF 357
A GA D + +K H +S SG+I V+NL + T D+ +LF
Sbjct: 676 AAMDGAVIDGHKI---QLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELF 732
Query: 358 EKYGPLAEVILPIDKETDKT-KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
+G L V +P K+ DK+ +GFA V FL+P A A L G LGR L +
Sbjct: 733 SSFGQLKSVRVP--KKFDKSARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVM 784
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 44 VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKP 102
+TDV++ G RRFAFIGY E A A++YFN +++ ++RI+V + D P
Sbjct: 37 ITDVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAKSFADPRVP 95
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 177/328 (53%), Gaps = 34/328 (10%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
R ILVKN+ T+ +L+ LFE G + RVL+PP G +V+F Q Q + AF A
Sbjct: 486 RGDTTILVKNIKNTTI-EELRTLFEEHGTVLRVLMPPSGTIAIVQFAQPVQCRTAFARKA 544
Query: 505 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQ--GV 562
Y++FK+ L+LE P+G+F + N A + + GV
Sbjct: 545 YSRFKDSVLFLEKGPKGLFTD--------------------------NVAVPTDARPAGV 578
Query: 563 --PEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKS 620
P V + +E D+ E ++L+++NLNF++T + FK V K DPK
Sbjct: 579 QKPSVADLLERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKK 638
Query: 621 PGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNV 680
PGQ LSMG+GFV F T++ ALKV+ LD H+I +K S+R L++ + +
Sbjct: 639 PGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKK 698
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
A G+K++V+N+PF+ + EV LF A+G+L +R+PKK S RGF F EF T E
Sbjct: 699 AANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSS--RGFAFAEFSTAKE 756
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEEAD 768
A A +L + TH+ GRRLV+++A+ D
Sbjct: 757 ALNAFNSL-KDTHILGRRLVIDFAQAED 783
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 176/424 (41%), Gaps = 90/424 (21%)
Query: 29 ITQEQLKAKFEEKG-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
IT+ + + F +G VTDV+L R F+GY + A A+ YFN +++ SR
Sbjct: 16 ITEAEFRKHFSAEGRQVTDVKLIPA-----RHIGFVGYKSAEDAARAVKYFNRSFIRMSR 70
Query: 88 IKVEKCSNLGDT--------------TKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTK 133
I V+ + D+ PK+ K P ++ PK + P+ K
Sbjct: 71 ISVDIAKPIADSKPQHKSPSKGSSKDADPKNAPKVLPPNTKVTAA--AVPKVEAAPDAPK 128
Query: 134 DSKPGKKSKNDPTFSDFLQLHGKDVSK------------------LLPLSNKDGEEKEEE 175
K + DP ++L + G SK +P +DGE ++E
Sbjct: 129 -RKLDVLDEADPKLQEYLDVMGAHPSKKMRNAEGLPTTVDEVLAPAVPAGLEDGES-DDE 186
Query: 176 NEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAG 235
ED + + +D E + AP S P AP P
Sbjct: 187 YEDIPSRTHNQSHTADQEMVD--------APLAASAEPSESAP--------------PVS 224
Query: 236 VKKKD---LKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKY 292
+ D L++ RT L + D ++ AL S +++
Sbjct: 225 LDATDDDWLRS----------RTNRL----LDLVDPEDAAFALRPAAS--GSAAVSVPST 268
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
S +N+A S +++ + A E ++ E ++ R+F+RNLSYTVTEDD
Sbjct: 269 SVENTA--SAKPEEHPAEDSREMAATSTHDPESAISLIE---KTSRLFLRNLSYTVTEDD 323
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412
+ + F K+G L EV +P+D + +KGFA++ + P A A+Q DGTVF GR++H++P
Sbjct: 324 VREHFAKFGILVEVHVPLDSK-GHSKGFAMIRYEKPASALAAFQ-TDGTVFQGRIVHILP 381
Query: 413 GKPK 416
K
Sbjct: 382 AAAK 385
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 33/223 (14%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK-------GFAL 382
AE+ E+ +FVRNL+++ T LT F+ + + +TD K GF
Sbjct: 592 AEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQA--KVKTKTDPKKPGQVLSMGFGF 649
Query: 383 VTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVV 442
V F + A A + +DG V + + K + +D R+ D +
Sbjct: 650 VAFRTKDQAQAALKVMDGQVLDAHKISV-----KASHRGLD----AAEERRREDMAKKAA 700
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQA 496
+K ++VKNLP+ +++ LF +G L + +P G EF +A
Sbjct: 701 NQGTK--LVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGF-AFAEFSTAKEA 757
Query: 497 KAAFNSLAYTKFKEVPLYLEWA------PEGVFAEAKEKSKGK 533
AFNSL T L +++A PE A ++K++ +
Sbjct: 758 LNAFNSLKDTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQ 800
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 612
E + L+++NL++ TED +R HF K G + V V
Sbjct: 305 EKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHV 339
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 198/386 (51%), Gaps = 42/386 (10%)
Query: 415 PKENEGNVDGKVHCCISERKL---------------DAFNQVVEARSKRIILVKNLPYRT 459
P N G + V ++E ++ DAF RS ILVKN+PY T
Sbjct: 453 PGANGGADNAAVRLALAETRIIQETKEFLAQQGINVDAFQGAKGPRSDTTILVKNIPYGT 512
Query: 460 LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519
+++ LF G++ +VL+PP G +VE N+A+ AF ++AY +FK LYLE AP
Sbjct: 513 SAEEVEKLFGEHGEVDKVLIPPSGTIAVVEMPVVNEARLAFRAIAYKRFKGGILYLEKAP 572
Query: 520 EGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEP 579
G+ + K EK + + + + D G +E V+
Sbjct: 573 VGLLTQ----HKVGEKVVKQAPIVGKSIDSSNPSVDLDGPAGAGAGDEAVD--------- 619
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
TLY+KNL+F++T++ + F A + K DP+ PG LSMGYGFV F + ++
Sbjct: 620 GATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDA 679
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
A K + LD H + + + RN E+ T++ S +KIL++N+PF+A +
Sbjct: 680 ARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGS-------TKILIKNLPFEATK 732
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
++ +LF + G+LK VRLPKK RGFGFVE+ T EA+ AM+AL + THL GR L
Sbjct: 733 RDIRDLFSSQGQLKSVRLPKKF--DNTTRGFGFVEYSTVREAQSAMEAL-KHTHLLGRHL 789
Query: 760 VLEWAEEADN----VEDIRKRTNRYF 781
VL+W+ A + V+ R +T ++F
Sbjct: 790 VLQWSHLASSTQQQVDMQRSKTKQHF 815
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 65/103 (63%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K ++ E + + I ESGR+F+RNL + + D++ FE +G + +V +P+DK+T
Sbjct: 292 MQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQT 351
Query: 375 DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KG A V+F P HA AY+ DG+ F GR+LHL+P K+
Sbjct: 352 KASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKD 394
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T +L+ F +KG VTDV+L +G R+F F+GY E +AQ ALDYFN T++ +SRI
Sbjct: 13 LTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDYFNRTFIDTSRI 72
Query: 89 KVEKCSNLGD 98
+E +GD
Sbjct: 73 SIELAKKIGD 82
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK-----TKGFALVT 384
++ + ++V+NLS++ T++ LT F A + + + + G+ V
Sbjct: 614 GDEAVDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVG 673
Query: 385 FLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEA 444
F + A A + +DG V L + + R +A + +
Sbjct: 674 FKSIDAARTAQKAMDGKVLDAHTLVV------------------TFARRNAEASTTSISS 715
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKA 498
IL+KNLP+ D++ LF G L V +P G G VE+ +A++
Sbjct: 716 GGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGF-GFVEYSTVREAQS 774
Query: 499 AFNSLAYTKFKEVPLYLEWA 518
A +L +T L L+W+
Sbjct: 775 AMEALKHTHLLGRHLVLQWS 794
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLP--KKMVGSGLHRGFGFVEFITKNEAKRA 744
++ +RN+PF A E+ F++FG +K V +P K+ S +G FV F A A
Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKAS---KGLAFVSFSDPAHALAA 371
Query: 745 MKALCQSTHLYGRRLVL 761
+A ST GR L L
Sbjct: 372 YRAKDGST-FQGRLLHL 387
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L ++ L T+ +R HF + G + V + R+ D S +GFV + + + Q
Sbjct: 4 LIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTS------RKFGFVGYRSEQEAQQ 57
Query: 643 ALKVLQNSSLDEHQIELK 660
AL + +D +I ++
Sbjct: 58 ALDYFNRTFIDTSRISIE 75
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 190/349 (54%), Gaps = 19/349 (5%)
Query: 419 EGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
E +V G V +R +D + + R +IILVKN P+ T ++ LF +G L R+L
Sbjct: 464 EAHVIGDVRKYFEDRGVDLTSFDKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRML 523
Query: 479 VPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKN 538
+PP G ++EF A+AAF+ LAY +FK LYLE P+ +F +E
Sbjct: 524 MPPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFT----------REPT 573
Query: 539 EEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDE-EREPEPDTTLYIKNLNFNSTEDSI 597
E E+++ A E + E+ E+DE E P +++KNLNF +T ++
Sbjct: 574 TNEVATIPEQQQNEHAVEAKISANEILGESKEDDEIESVQGPTVAVFVKNLNFATTVQAL 633
Query: 598 RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657
FK TV K DPK+ G+ LSMG+GFV+F T+E N A+ L LD H++
Sbjct: 634 SDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKL 693
Query: 658 ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRL 717
+LK S++ T SS SKI+++N+PF+A + ++ ELF AFG+LK VR+
Sbjct: 694 QLKLSHKQ-----GTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRV 748
Query: 718 PKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
PKK S RGF FVEF EA+ AM L + HL GRRLV+++AE+
Sbjct: 749 PKKFDQSA--RGFAFVEFNLMKEAETAMSQL-EGVHLLGRRLVMQYAEQ 794
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 328 QFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM 387
Q A+ I E+GR+F+RN+SY +E+D LF +YG L EV + ID T K+KGF V FL
Sbjct: 301 QIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLK 360
Query: 388 PEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
E AT+AY+ LD +F GR+LH++P K++
Sbjct: 361 KEDATRAYRSLDKQIFQGRLLHILPADKKKD 391
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89
T+E+L+ F ++G VTDV+L G+ R+FAFIGY D A+ A+ YFN +++ ++RI+
Sbjct: 14 TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIE 73
Query: 90 VEKCSNLGDTTKPKSW 105
VE D T P S+
Sbjct: 74 VEFAKTFSDPTVPLSF 89
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 41/198 (20%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLP---LASVRT----------TFLGMAYIGFKDEKNCNK 273
+ VKNL + L FKPLP +A+V+T +G ++ F+ ++ N
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678
Query: 274 ALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDI 333
A+ S G L+ +K +K H + S +
Sbjct: 679 AI----STLDGHVLDGHKL---------------------QLKLSHKQGTGTSASSIKKS 713
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT-KGFALVTFLMPEHAT 392
+S +I ++NL + T DL +LF +G L V +P K+ D++ +GFA V F + + A
Sbjct: 714 GKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVP--KKFDQSARGFAFVEFNLMKEAE 771
Query: 393 QAYQHLDGTVFLGRMLHL 410
A L+G LGR L +
Sbjct: 772 TAMSQLEGVHLLGRRLVM 789
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 44/199 (22%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I V+N + T D++ +LF YG L +++P A++ F A A+ L
Sbjct: 495 ILVKNFPFGTTIDEIGELFSAYGQLKRMLMP------PAGTIAIIEFRDAPSARAAFSKL 548
Query: 399 DGTVFLGRMLHLIPG------------------KPKENEGNVDGKVHC--CISERKLDAF 438
F +L+L G + ++NE V+ K+ + E K D
Sbjct: 549 AYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQQNEHAVEAKISANEILGESKEDDE 608
Query: 439 NQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL--------------GRVLVPPYGI 484
+ V+ + + VKNL + T L LF+P G+ L +
Sbjct: 609 IESVQGPT-VAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGF-- 665
Query: 485 TGLVEFLQKNQAKAAFNSL 503
G VEF K QA A ++L
Sbjct: 666 -GFVEFRTKEQANVAISTL 683
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 83/215 (38%), Gaps = 37/215 (17%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVIL------PIDKETDKT--KGFALVTFLMPEH 390
+FV+NL++ T L+ LF+ PL ++ P K + KT GF V F E
Sbjct: 619 VFVKNLNFATTVQALSDLFK---PLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQ 675
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRII 450
A A LDG V G L L K +G ++ I
Sbjct: 676 ANVAISTLDGHVLDGHKLQL---KLSHKQGTGTSASSIK-------------KSGKSSKI 719
Query: 451 LVKNLPYRTLPTDLKALFEPFGDLGRVLVP------PYGITGLVEFLQKNQAKAAFNSLA 504
++KNLP+ DL LF FG L V VP G VEF +A+ A + L
Sbjct: 720 IIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGF-AFVEFNLMKEAETAMSQLE 778
Query: 505 YTKF---KEVPLYLEWAPEGVFAEAKEKSKGKEKE 536
+ V Y E PE E + +K +K+
Sbjct: 779 GVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQ 813
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 742
+TG ++ +RNI ++A + + LF +G L+ V + +G +GF +V+F+ K +A
Sbjct: 308 ETG-RLFIRNISYEASEEDFRSLFSQYGALEEVHIAID-TRTGKSKGFLYVQFLKKEDAT 365
Query: 743 RAMKALCQSTHLYGRRL 759
RA ++L + GR L
Sbjct: 366 RAYRSLDKQI-FQGRLL 381
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 53/346 (15%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FVRNL++ +DDLT F GP+ ++ + ET + +G+ VTF M E A +A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 399 DGTVFLGRMLHLIPGKP-KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
GR+L L P K +E + D A + + ++ ++++NLP+
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQN----------KAVKKTIRQDNRPRLIIRNLPW 116
Query: 458 RT-LPTDLKALFEPFGDLGRVLVPPYGITGLVEFL-----QKNQAKAAFNSLAYTKFKEV 511
P L+ F FG + + +P G + F + A+ A NSL T+
Sbjct: 117 SIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGR 176
Query: 512 PLYLEWA-------------------------PEG---VFAEAKEKSKGKEKEKNEEEGE 543
P+ ++WA EG V +A S+ +E+ EG+
Sbjct: 177 PIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGK 236
Query: 544 E--GEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEP-DTTLYIKNLNFNSTEDSIRRH 600
E GE E++ + ++ G ++N E R+ E + T++++NL F TE + H
Sbjct: 237 ELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNH 296
Query: 601 FKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKV 646
F++ GP+A + K P S+G GF++F + L++
Sbjct: 297 FRQFGPLAYAKLV-----KDPATDRSLGRGFIKFRYEKDCQNCLEM 337
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
++TL+++NL F + +D + F GPI V +P + GYGFV F E
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVV-----TNPETGENRGYGFVTFSMLED 58
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS--SNVAKQTGSKILVRNIPFQA 697
+A K L+N L + L + SE T + K+ + + ++++RN+P+
Sbjct: 59 AQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSI 118
Query: 698 KQSE-VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
K+ + +E F FG+++ +++P K G G GF FV + A+ AM +L T + G
Sbjct: 119 KKPQHLEPHFSKFGKVREIKIPTK--GGGRMCGFAFVWMKDRKAAEEAMNSL-NGTEIDG 175
Query: 757 RRLVLEWAEEADNVE 771
R + ++WA D E
Sbjct: 176 RPIAVDWAVSKDAFE 190
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 684 TGSKILVRNIPFQAKQSEVEELFKAFGELK---FVRLPKKMVGSGLHRGFGFVEFITKNE 740
+ S + VRN+ FQ KQ ++ F G +K V P+ +G +RG+GFV F +
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPE----TGENRGYGFVTFSMLED 58
Query: 741 AKRAMKALCQSTHLYGRRLVLEWA 764
A+RA K L ++ L+GR L L++A
Sbjct: 59 AQRAAKEL-KNKKLHGRILRLDFA 81
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/475 (23%), Positives = 199/475 (41%), Gaps = 95/475 (20%)
Query: 306 DNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAE 365
++++A+ ++ A + Q +S AE+ S ++V L+ +V E L ++F G +A
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAEN---SASLYVGELNPSVNEATLFEIFSPIGQVAS 95
Query: 366 VILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI-----PGKPKENEG 420
+ + D + K+ G+A V + E +A + L+ T GR ++ P + +G
Sbjct: 96 IRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG 155
Query: 421 NVDGK-VHCCISERKL-DAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
N+ K +H I + L D F+ +I+ VK + TD DLG+
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAF-----GKILSVK------VATD---------DLGQSK 195
Query: 479 VPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKN 538
G V + + A+AA S+ G+ +E GK K
Sbjct: 196 C-----FGFVHYETEEAAQAAIESV----------------NGMLLNDREVYVGKHVSKK 234
Query: 539 EEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIR 598
+ E + EE K N T +Y+KN++ TE
Sbjct: 235 DRESKL--EEMKANY---------------------------TNIYVKNIDLAYTEKEFE 265
Query: 599 RHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658
F G I S+ + + + KS G+GFV F E+ +A++ L + ++ +I
Sbjct: 266 ELFAPFGKITSIYLEKDAEGKS------KGFGFVNFEEHEAAAKAVEELNDKEINGQKIY 319
Query: 659 LKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKF 714
+ R+ + E K+ + ++K G + V+N+ Q ++EE FK FG +
Sbjct: 320 VGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITS 379
Query: 715 VRLPKKMV-GSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
++ MV +G +GFGFV F T EA +A+ + Q + G+ L + A+ D
Sbjct: 380 SKV---MVDDAGKSKGFGFVCFSTPEEATKAITEMNQRM-VNGKPLYVALAQRKD 430
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/433 (21%), Positives = 165/433 (38%), Gaps = 85/433 (19%)
Query: 60 FAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAP------DSS 113
+A++ YH+ + + A++ N T V ++ WS+ P D +
Sbjct: 110 YAYVNYHKLEDGEKAIEELNYTPVEGRPCRI-------------MWSQRDPSARRSGDGN 156
Query: 114 AYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGEEKE 173
+ + N+ P D K H S GK D Q SK + + EE
Sbjct: 157 IF--IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQ------SKCFGFVHYETEEAA 208
Query: 174 EENEDESNNQIAHADISDME-YLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNL 232
+ + N + ++D E Y+ KD SK K Y I VKN+
Sbjct: 209 QAAIESVNGML----LNDREVYVGKHVSKKDRE---------SKLEEMKANYTNIYVKNI 255
Query: 233 PAGVKKKDLKAYFKPLPLASVRTTFL---------GMAYIGFKDEKNCNKALNKNKSFWK 283
+K+ + F P + + +L G ++ F++ + KA+ +
Sbjct: 256 DLAYTEKEFEELFAPF--GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEE----LN 309
Query: 284 GKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG-RIFVR 342
K++N K Y G A + + K Q ++V+ + G +FV+
Sbjct: 310 DKEINGQKI-------YVGRAQKKRE------RTEELKKQYEAVRLEKLSKYQGVNLFVK 356
Query: 343 NLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTV 402
NL + + L + F+ +G + + +D + K+KGF V F PE AT+A ++ +
Sbjct: 357 NLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRM 415
Query: 403 FLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPT 462
G+ L++ + K+ V E+++ A NQ+ R + LP + +P
Sbjct: 416 VNGKPLYVALAQRKD--------VRRSQLEQQIQARNQM---RMQNAAAAGGLPGQFMPP 464
Query: 463 DL---KALFEPFG 472
+ F P G
Sbjct: 465 MFYGQQGFFPPNG 477
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/418 (23%), Positives = 159/418 (38%), Gaps = 83/418 (19%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L + VT+ L F + G + V + D T ++ G+ V F P+ A +A Q L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYR 458
+ G+ + ++ H S R+ A N I +KNL
Sbjct: 98 NYIPLYGKPIRVM-------------YSHRDPSVRRSGAGN----------IFIKNLDES 134
Query: 459 TLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
D KAL + F G ++ K A +S
Sbjct: 135 I---DHKALHDTFSSFGNIV----------------SCKVAVDS---------------- 159
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
+ K G + NEE ++ E K D Q V E D
Sbjct: 160 ------SGQSKGYGFVQYANEESAQKAIE-KLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +Y+KNL ++T+D ++ F + G I S V + + K S G+GFV F +
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK------SKGFGFVNFENAD 266
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVA----KQTGSKILVRNIP 694
+A++ L D+ + + R+ + E E R N+ K S + V+N+
Sbjct: 267 DAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLD 326
Query: 695 FQAKQSEVEELFKAFGEL---KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
+++E+F FG + K +R P +G +G GFV F T EA AM L
Sbjct: 327 PSISDEKLKEIFSPFGTVTSSKVMRDP-----NGTSKGSGFVAFATPEEATEAMSQLS 379
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+T+LY+ +L+FN T+ + F + G + +V V R + S+GYG+V F +
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRR-----SLGYGYVNFTNPQD 89
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
+A++ L L I + S+R+ +V+R + I ++N+
Sbjct: 90 AARAIQELNYIPLYGKPIRVMYSHRD-----PSVRRSGAG-------NIFIKNLDESIDH 137
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F +FG + V + SG +G+GFV++ + A++A++ L
Sbjct: 138 KALHDTFSSFGNI--VSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 154/413 (37%), Gaps = 100/413 (24%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK 316
LG Y+ F + ++ +A+ + N GK + + +D S + SGA
Sbjct: 77 LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGA------------- 123
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
G IF++NL ++ L F +G + + +D + +
Sbjct: 124 --------------------GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQ 162
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
+KG+ V + E A +A + L+G + + +++ P ++ + K
Sbjct: 163 SKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK--------- 213
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-----GLVEFL 491
F V VKNL T DLK F +G + +V G G V F
Sbjct: 214 -FTNV---------YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 263
Query: 492 QKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKE 551
+ A A SL KF + KE G+ ++K+E E E
Sbjct: 264 NADDAARAVESLNGHKFDD----------------KEWYVGRAQKKSERETELRV----- 302
Query: 552 NTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVT 611
E+N++E ++ + LY+KNL+ + +++ ++ F G + S
Sbjct: 303 ------------RYEQNLKEAADKFQS--SNLYVKNLDPSISDEKLKEIFSPFGTVTSSK 348
Query: 612 VARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664
V R DP S G GFV F T E +A+ L ++ + + + R
Sbjct: 349 VMR--DPNG----TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQR 395
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 24/206 (11%)
Query: 220 HKRQYHTIVVKNLPAGVKKKDLKAYF-------KPLPLASVRTTFLGMAYIGFKDEKNCN 272
+K ++ + VKNL DLK F + + G ++ F++ +
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 273 KALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAED 332
+A+ + LN +K+ D+ Y G A + E ++ ++ E +++ A D
Sbjct: 270 RAV---------ESLNGHKF--DDKEWYVGRAQKKSERETE-LRVRY----EQNLKEAAD 313
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+S ++V+NL +++++ L ++F +G + + D +KG V F PE AT
Sbjct: 314 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEAT 372
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKEN 418
+A L G + + L++ + KE+
Sbjct: 373 EAMSQLSGKMIESKPLYVAIAQRKED 398
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 76.6 bits (187), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I+V NLSY+VT+DDLTK+F +YG + V LP D+ET + +GF V A Q L
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDG 424
DG ++GR+L + +P+E +G G
Sbjct: 63 DGAEWMGRVLKVNKARPREEKGARSG 88
Score = 36.2 bits (82), Expect = 0.97, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTE-GKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
Y +TQ+ L F E G+VT VQL E G+ R F F+ AA+ +
Sbjct: 10 YSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMG 69
Query: 86 SRIKVEKC---SNLGDTTKPKSWSK 107
+KV K G + SWS+
Sbjct: 70 RVLKVNKARPREEKGARSGGGSWSR 94
Score = 35.8 bits (81), Expect = 1.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
I V N+ + Q ++ ++F +G + V+LP +G RGFGFVE + A++A
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDR-ETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 748 L 748
L
Sbjct: 62 L 62
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 170/422 (40%), Gaps = 92/422 (21%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L +V E L LF + P+ + + D T ++ G+A V F PE A++A + L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYR 458
+ R + ++ +S R + K + +KNL
Sbjct: 120 NYAPIRDRPIRIM------------------LSNR-----DPSTRLSGKGNVFIKNL--- 153
Query: 459 TLPTDLKALFEPFGDLGRVLVPPYGIT--------GLVEFLQKNQAKAAFNSLAYTKFKE 510
D KAL+E F G +L + G V+F ++ A+AA + L +
Sbjct: 154 DASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLND 213
Query: 511 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVE 570
+++ G F +++++ E G VP
Sbjct: 214 KQVFV-----GHFVRRQDRAR-------SESG------------------AVPSF----- 238
Query: 571 EDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYG 630
T +Y+KNL T+D +++ F K G I+S V + + S +G
Sbjct: 239 ----------TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN------SRSFG 282
Query: 631 FVQFYTRESLNQALKVLQNSSLDEHQIEL----KRSNRNLESEATTVKRKSSNVAKQTGS 686
FV F + E+ A++ + SL E + + K+S+R E + + S K GS
Sbjct: 283 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGS 342
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ ++N+ +++E+F +G + ++ M GL RGFGFV + EA AMK
Sbjct: 343 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKV--MMNSQGLSRGFGFVAYSNPEEALLAMK 400
Query: 747 AL 748
+
Sbjct: 401 EM 402
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 85/425 (20%), Positives = 156/425 (36%), Gaps = 110/425 (25%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK 316
LG AY+ F + ++ ++A+ N + + + + I ++D S + SG
Sbjct: 99 LGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSG-------------- 144
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
G +F++NL ++ L + F +G + + +D +
Sbjct: 145 -------------------KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGR 184
Query: 377 TKGFALVTFLMPEHATQAYQHLDGT------VFLGRMLHLIPGKPKENEGNVDGKVHCCI 430
+KG+ V F E A A L+G VF+G H +
Sbjct: 185 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG---HFV------------------- 222
Query: 431 SERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLV--PPYGIT--- 485
R+ A ++ S + VKNLP +LK F +GD+ +V G +
Sbjct: 223 -RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSF 281
Query: 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEG 545
G V F+ A A + E LY+ G+ ++K++ E E
Sbjct: 282 GFVNFVSPEAAAVAVEKMNGISLGEDVLYV----------------GRAQKKSDREEELR 325
Query: 546 EEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCG 605
+ ++E + + QG + LY+KNL+ + ++ ++ F + G
Sbjct: 326 RKFEQERISRFEKLQG-------------------SNLYLKNLDDSVNDEKLKEMFSEYG 366
Query: 606 PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRN 665
+ S V Q LS G+GFV + E A+K + + + + + R
Sbjct: 367 NVTSCKVMMNS------QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 420
Query: 666 LESEA 670
E +A
Sbjct: 421 EERQA 425
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 217 APVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALN 276
AP+ R ++ P+ + K L AS+ L + F +C A++
Sbjct: 122 APIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLD-ASIDNKALYETFSSFGTILSCKVAMD 180
Query: 277 KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK---AKHWKSQEDSVQFAEDI 333
+ K ++ K+ +A+ AA D N + N K H+ ++D +
Sbjct: 181 ---VVGRSKGYGFVQFEKEETAQ---AAIDKLNGMLLNDKQVFVGHFVRRQDRAR----- 229
Query: 334 AESG------RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM 387
+ESG ++V+NL +T+D+L K F KYG ++ ++ + ++ ++ F V F+
Sbjct: 230 SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVV-MKDQSGNSRSFGFVNFVS 288
Query: 388 PEHATQAYQHLDG------TVFLGR 406
PE A A + ++G +++GR
Sbjct: 289 PEAAAVAVEKMNGISLGEDVLYVGR 313
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-------T 81
+ E+LK F E G VT ++ ++G R F F+ Y ++A A+ N
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 412
Query: 82 YVFSSRIKVEKCSNLGDT-TKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEH 131
YV ++ K E+ ++L T+ +S +P S H+ P + H
Sbjct: 413 YVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPH 463
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 15/193 (7%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KN++ N +E+S + F G I S+ + + +D K S G+GFV F ES
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGK------SKGFGFVNFEDHESA 286
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A++ L + ++ +I + R+ + E K+ + +AK G + V+N+
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDT 346
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
++EE FK FG + ++ MV +G +GFGFV F T EA +A+ + + +
Sbjct: 347 IDSEKLEEEFKPFGTITSAKV---MVDEAGKSKGFGFVCFTTPEEATKAITEM-NTRMIN 402
Query: 756 GRRLVLEWAEEAD 768
G+ L + A+ D
Sbjct: 403 GKPLYVALAQRKD 415
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 13/207 (6%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
KH ++ +F E A I+V+N+ +E+ KLF +G + + L D++ K
Sbjct: 213 GKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GK 271
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
+KGF V F E A +A + L+ G+ +++ + K K + + KL
Sbjct: 272 SKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLA 331
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLVEFL 491
+ V + VKNL L+ F+PFG + +V+V G + G V F
Sbjct: 332 KYQGVN-------LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFT 384
Query: 492 QKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 385 TPEEATKAITEMNTRMINGKPLYVALA 411
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL---------GMAYIGFKDEKNC 271
K + I VKN+ ++ + F P + + +L G ++ F+D ++
Sbjct: 229 KANFTNIYVKNIDLNYSEESFEKLFSPF--GKITSIYLEKDQDGKSKGFGFVNFEDHESA 286
Query: 272 NKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAE 331
KA+ + K++N K Y G A + + K Q ++V+ +
Sbjct: 287 VKAVEE----LNDKEINGQKI-------YVGRAQKKRE------RLEELKKQYEAVRLEK 329
Query: 332 DIAESG-RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
G +FV+NL T+ + L + F+ +G + + +D E K+KGF V F PE
Sbjct: 330 LAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEE 388
Query: 391 ATQAYQHLDGTVFLGRMLHL 410
AT+A ++ + G+ L++
Sbjct: 389 ATKAITEMNTRMINGKPLYV 408
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 20/200 (10%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D ++IKNL+ ++ F G I S VA + GQ S +GFV + T E+
Sbjct: 139 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF----GQ--SKCFGFVHYETAEA 192
Query: 640 LNQALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697
A++ + L++ ++ + + S ++ ES+ +K +N I V+NI
Sbjct: 193 AEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN--------IYVKNIDLNY 244
Query: 698 KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ E+LF FG++ + L K G +GFGFV F A +A++ L + G+
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQ--DGKSKGFGFVNFEDHESAVKAVEEL-NDKEINGQ 301
Query: 758 RLVLEWAEEA-DNVEDIRKR 776
++ + A++ + +E+++K+
Sbjct: 302 KIYVGRAQKKRERLEELKKQ 321
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK--------DPKSPGQFLSMGY 629
E T L + L TED IR F G I SV + R K +P++P + S+GY
Sbjct: 182 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGY 241
Query: 630 GFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL 689
GFV + + QA+ VL L I++ + R SS+ K G+ +
Sbjct: 242 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKV------------SFARPSSDAIK--GANLY 287
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
V +P Q E+E +F FG + R+ + +G GF+ F + EA RA+ AL
Sbjct: 288 VSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 347
Query: 750 QST 752
+T
Sbjct: 348 GTT 350
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
IF+ NL+ E L +LF +G + V + D T++ KG+ V+ + A A + L
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499
Query: 399 DGTVFLGRMLHL 410
+G R+L +
Sbjct: 500 NGYTMGNRVLQV 511
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 327 VQFA---EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL-AEVILPIDKETDKTKGFAL 382
V FA D + ++V L T+T+ +L +F +G + IL +TKG
Sbjct: 271 VSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGF 330
Query: 383 VTFLMPEHATQAYQHLDGT 401
+ F E AT+A L+GT
Sbjct: 331 IRFDKREEATRAIIALNGT 349
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 38/149 (25%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET-------------DKTKGFALVTF 385
+ V L T+TED++ LF G + V L DK ++ G+ V +
Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246
Query: 386 LMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEAR 445
+ P+ A QA L+G + + + +P +A
Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS-------------------------DAI 281
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDL 474
+ V LP +L+A+F PFG +
Sbjct: 282 KGANLYVSGLPKTMTQQELEAIFAPFGAI 310
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK--------DPKSPGQFLSMGY 629
E T L + L TED IR F G I SV + R K +P++P + S+GY
Sbjct: 146 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGY 205
Query: 630 GFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL 689
GFV + + QA+ VL L I++ + R SS+ K G+ +
Sbjct: 206 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKV------------SFARPSSDAIK--GANLY 251
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
V +P Q E+E +F FG + R+ + +G GF+ F + EA RA+ AL
Sbjct: 252 VSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 311
Query: 750 QST 752
+T
Sbjct: 312 GTT 314
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
IF+ NL+ E L +LF +G + V + D T++ KG+ V+ + A A + L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 399 DGTVFLGRMLHL 410
+G R+L +
Sbjct: 464 NGYTMGNRVLQV 475
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 327 VQFA---EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL-AEVILPIDKETDKTKGFAL 382
V FA D + ++V L T+T+ +L +F +G + IL +TKG
Sbjct: 235 VSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGF 294
Query: 383 VTFLMPEHATQAYQHLDGT 401
+ F E AT+A L+GT
Sbjct: 295 IRFDKREEATRAIIALNGT 313
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 38/149 (25%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET-------------DKTKGFALVTF 385
+ V L T+TED++ LF G + V L DK ++ G+ V +
Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210
Query: 386 LMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEAR 445
+ P+ A QA L+G + + + +P +A
Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKVSFARPSS-------------------------DAI 245
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDL 474
+ V LP +L+A+F PFG +
Sbjct: 246 KGANLYVSGLPKTMTQQELEAIFAPFGAI 274
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 180/467 (38%), Gaps = 109/467 (23%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+ ++V +L +VTE L F ++ L V L D + ++ + FL + A A
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 396 QHLDGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRII 450
+ + ++ G+M+ ++ P + GNV
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNV---------------------------- 114
Query: 451 LVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT---GLVEFLQKNQAKAAFNSLAY 505
VKNLP L+ +F+ FG++ V G + G V+F Q++ A AA +L
Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
Query: 506 TKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEV 565
T + +Y+ G F + ++ K +EK N
Sbjct: 175 TIVADKEIYV-----GKFMKKTDRVKPEEKYTN--------------------------- 202
Query: 566 EENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 625
LY+KNL+ + +ED +R F + G I S+ +A+ ++ L
Sbjct: 203 -----------------LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR------L 239
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR------KSSN 679
GY FV F E +A + + + + + R+ + E E ++ +
Sbjct: 240 CRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKM 299
Query: 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS-GLHRGFGFVEFITK 738
+AK S I V+N+ + EEL K F + + K M G +GFGFV F T
Sbjct: 300 IAKV--SNIYVKNVNVAVTE---EELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTP 354
Query: 739 NEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYFGTAV 785
EA A+K +G+ L + A++ ED + + FG V
Sbjct: 355 EEAIDAVKTF-HGQMFHGKPLYVAIAQKK---EDRKMQLQVQFGNRV 397
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
IA+ I+V+N++ VTE++L K F + G + L D E K+KGF V F PE A
Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAI 358
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKEN 418
A + G +F G+ L++ + KE+
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKED 384
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T L+ F++ G + ++ +GK R + F+ + +ED A AA+ N+T V I
Sbjct: 123 VTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Query: 89 KVEKCSNLGDTTKP 102
V K D KP
Sbjct: 183 YVGKFMKKTDRVKP 196
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
+T+E+L+ F + GT+T +L +GK + F F+ + ++A A+ F+
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 69/276 (25%)
Query: 512 PLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEE 571
P+ +E P V A A ++ E E+ E+ + EN P V
Sbjct: 17 PVAVE-TPSAVEAPASADPSSEQSVAVEGNSEQAEDNQGEND---------PSVVPANAI 66
Query: 572 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGF 631
RE D LY+ NL+ TED ++++F+ GPIA++ + K+ K ++ Y F
Sbjct: 67 TGGRETS-DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNK------NVNYAF 119
Query: 632 VQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVR 691
V+++ N AL+ L KQ + I+
Sbjct: 120 VEYHQSHDANIALQTLN--------------------------------GKQIENNIVKI 147
Query: 692 NIPFQAKQSEVEELFKAF-GELK-----------FVRLPKKMVG-------SGLHRGFGF 732
N FQ++QS ++ F F G+L F P + G +G RG+GF
Sbjct: 148 NWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGF 207
Query: 733 VEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
V F ++++A+ AM ++ Q L GR L + WA + D
Sbjct: 208 VSFTSQDDAQNAMDSM-QGQDLNGRPLRINWAAKRD 242
Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 44/238 (18%)
Query: 185 AHADISDMEYLKLKTKSK----DTAPSDPSVPPVSKAPVHKRQYHTIV-VKNLPAGVKKK 239
A AD S + + ++ S+ + +DPSV P + + ++ V NL + +
Sbjct: 30 ASADPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITED 89
Query: 240 DLKAYFK-PLPLASVRTTF------LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKY 292
LK YF+ P+A+++ + A++ + + N AL GKQ+
Sbjct: 90 ILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT----LNGKQIE---- 141
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
NI +W Q S Q + D ++ +FV +L+ V ++
Sbjct: 142 --------------------NNIVKINWAFQ--SQQSSSD--DTFNLFVGDLNVNVDDET 177
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
L F+ + + D +T ++G+ V+F + A A + G GR L +
Sbjct: 178 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
IT++ LK F+ G + ++++ K +AF+ YH+ A AL N + ++ +
Sbjct: 86 ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 145
Query: 89 KV 90
K+
Sbjct: 146 KI 147
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 17/194 (8%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y KN++ + +E+ ++ F+ G I S+ + + + KS G+GFV F ES
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKS------KGFGFVNFENHESA 285
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN-----VAKQTGSKILVRNIPF 695
+A+ L + ++ +I + R+ + E +K++ N ++K G + ++N+
Sbjct: 286 VKAVDELNDKEINGQKIYVGRAQKKRE-RLEELKKQYENTRLEKLSKYQGVNLFIKNLDD 344
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHL 754
++EE FK FG + R+ MV +G +GFGFV F + EA +A+ + Q +
Sbjct: 345 TIDSEKLEEEFKPFGSITSARV---MVDETGKSKGFGFVCFSSPEEATKAITEMNQRM-I 400
Query: 755 YGRRLVLEWAEEAD 768
YG+ L + A+ D
Sbjct: 401 YGKPLYVALAQRKD 414
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
KH ++ +F E A ++ +N+ +E++ KLFE YG + + L D E K
Sbjct: 212 GKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEG-K 270
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
+KGF V F E A +A L+ G+ +++ + K + E K
Sbjct: 271 SKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRER----------LEELKKQ 320
Query: 437 AFNQVVEARSKRI---ILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLV 488
N +E SK + +KNL L+ F+PFG + RV+V G + G V
Sbjct: 321 YENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFV 380
Query: 489 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
F +A A + PLY+ A
Sbjct: 381 CFSSPEEATKAITEMNQRMIYGKPLYVALA 410
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+F++NL T+ + L + F+ +G + + +D ET K+KGF V F PE AT+A +
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEM 395
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYR 458
+ + G+ L++ + K+ V E+++ A NQ+ R + +P +
Sbjct: 396 NQRMIYGKPLYVALAQRKD--------VRRSQLEQQIQARNQM---RMQNAAATGGIPGQ 444
Query: 459 TLP 461
+P
Sbjct: 445 FIP 447
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 21/183 (11%)
Query: 553 TAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTV 612
+ EE Q E EE D + + +LY+ LN + E + F G +AS+ V
Sbjct: 25 STEETEQTASGETEEAA--DSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRV 82
Query: 613 ARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATT 672
R K S+GY +V F+ E +A++ L S ++ + S R+ +
Sbjct: 83 CRDAVTKK-----SLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRD-----PS 132
Query: 673 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 732
++R I ++N+ + + F AFG++ ++ + G+ + FGF
Sbjct: 133 LRRNGD-------GNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDM--GISKCFGF 183
Query: 733 VEF 735
V +
Sbjct: 184 VHY 186
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 97/200 (48%), Gaps = 20/200 (10%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D ++IKNL+ ++ F G I S VA + +S +GFV + T E+
Sbjct: 138 DGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVA------TDDMGISKCFGFVHYETAEA 191
Query: 640 LNQALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697
A++ + L++ ++ + + S ++ ES+ +K +NV +NI
Sbjct: 192 AEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNV--------YAKNIDLDF 243
Query: 698 KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ E ++LF+A+G++ + L K G +GFGFV F A +A+ L + G+
Sbjct: 244 SEEEFKKLFEAYGKITSIYLEKDH--EGKSKGFGFVNFENHESAVKAVDEL-NDKEINGQ 300
Query: 758 RLVLEWAEEA-DNVEDIRKR 776
++ + A++ + +E+++K+
Sbjct: 301 KIYVGRAQKKRERLEELKKQ 320
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 18 LDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77
+DLD ++E+ K FE G +T + L+ EGK + F F+ + + A A+D
Sbjct: 239 IDLD-------FSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 78 FNNTYVFSSRIKVEKC 93
N+ + +I V +
Sbjct: 292 LNDKEINGQKIYVGRA 307
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 159/427 (37%), Gaps = 103/427 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
+ V G+ + ++ P K GN I +K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN----------------------------IFIK 104
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-------GLVEFLQKNQAKAAFNSLAYT 506
NL D KAL++ F G +L G V F + A+ A +
Sbjct: 105 NL---DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--- 158
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566
G+ ++ G+ K + E E E G K+
Sbjct: 159 -------------NGMLLNDRKVFVGRFKSRKEREAELGARAKE---------------- 189
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
T +YIKN + ++ ++ F K GP SV V + K S
Sbjct: 190 -------------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK------S 230
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-----KSSNVA 681
G+GFV F E +A+ + L+ QI + R+ + +E + T +KR K +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRIT 289
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ G + V+N+ + + F FG + ++ M+ G +GFGFV F + EA
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEA 346
Query: 742 KRAMKAL 748
+A+ +
Sbjct: 347 TKAVTEM 353
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P +LY+ +L+ + TE + F GPI S+ V R + S+GY +V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPA 63
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+AL + + + + S R+ ++ K I ++N+
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRD------------PSLRKSGVGNIFIKNLDKSID 111
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F AFG + ++ GS +G+GFV F T+ A+RA++ +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKM 158
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 146/392 (37%), Gaps = 105/392 (26%)
Query: 206 PSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------F 257
PS PS P S + V +L V + L F P P+ S+R
Sbjct: 3 PSAPSYPMAS-----------LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS 51
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N-------------IKAK--------------HWKSQEDSVQFAEDI------------- 333
N + K H+++QE + + E +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 334 ---------AESG-------RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
AE G ++++N + ++ L +LF K+GP V + D E+ K+
Sbjct: 172 RFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
KGF V+F E A +A ++G G+ +++ G KV ER+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV---------GRAQKKV-----ERQTEL 276
Query: 438 ---FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----G 486
F Q+ + R R + VKNL L+ F PFG + V G G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F +A A + PLY+ A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ELF FG V++ M SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KELFGKFGPALSVKV---MTDESGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYV 263
Query: 762 EWAEE 766
A++
Sbjct: 264 GRAQK 268
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ F+ ++ KA+++ GK+LN Y G A E +K K
Sbjct: 232 GFGFVSFERHEDAQKAVDE----MNGKELN-------GKQIYVGRAQKKVERQTE-LKRK 279
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDK 376
+ ++D + + + ++V+NL + ++ L K F +G + A+V++ E +
Sbjct: 280 FEQMKQDRITRYQGV----NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM----EGGR 331
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-------TYVF 84
E+LK F + G V++ GK + F F+ + R + AQ A+D N YV
Sbjct: 205 ERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 85 SSRIKVEKCSNL 96
++ KVE+ + L
Sbjct: 265 RAQKKVERQTEL 276
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T LY+KN+N +T++ + F K GPI S ++ + D K G+GFV + E
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGK------LKGFGFVNYEKHEDA 272
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A++ L +S L+ ++ + R+ + E K+ + +AK G + V+N+
Sbjct: 273 VKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDS 332
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++EE F +G + ++ + +G +GFGFV F T EA +A+ Q + G
Sbjct: 333 VDDEKLEEEFAPYGTITSAKVMR--TENGKSKGFGFVCFSTPEEATKAITEKNQQI-VAG 389
Query: 757 RRLVLEWAEEAD 768
+ L + A+ D
Sbjct: 390 KPLYVAIAQRKD 401
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 94/434 (21%), Positives = 158/434 (36%), Gaps = 108/434 (24%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRT-------TFLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P+ ++S+R T LG AY+ F D + KA+ +
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAES 336
N + KG+ I +D S + G S
Sbjct: 99 LNYTPIKGRLCRIMWSQRDPSLRKKG---------------------------------S 125
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL + L F +G + + D E K+KGF V F A +A
Sbjct: 126 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAID 184
Query: 397 HLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI-ILVKNL 455
L+G + G+ +++ P H ER +Q+ E ++ + VKN+
Sbjct: 185 ALNGMLLNGQEIYVAP--------------HLSRKERD----SQLEETKAHYTNLYVKNI 226
Query: 456 PYRTLPTDLKALFEPFGDLGRVLVPPYGIT-----GLVEFLQKNQAKAAFNSLAYTKFKE 510
T + LF FG + + G V + + A A +L ++
Sbjct: 227 NSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNG 286
Query: 511 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVE 570
LY+ G+ ++KNE ++ + + QGV
Sbjct: 287 EKLYV----------------GRAQKKNERMHVLKKQYEAYRLEKMAKYQGV-------- 322
Query: 571 EDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYG 630
L++KNL+ + ++ + F G I S V R ++ K S G+G
Sbjct: 323 -----------NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK------SKGFG 365
Query: 631 FVQFYTRESLNQAL 644
FV F T E +A+
Sbjct: 366 FVCFSTPEEATKAI 379
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+LY+ +L + +E + F G ++S+ V R K+ S+GY +V F E+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT-----SLGYAYVNFNDHEAG 92
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
+A++ L + + + S R+ ++++K S I ++N+
Sbjct: 93 RKAIEQLNYTPIKGRLCRIMWSQRD-----PSLRKKGS-------GNIFIKNLHPDIDNK 140
Query: 701 EVEELFKAFGELKFVRLPKKMVG--SGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F FG++ L K+ +G +GFGFV F + AK A+ AL
Sbjct: 141 ALYDTFSVFGDI----LSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV+NL +V ++ L + F YG + + + E K+KGF V F PE AT+A
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 399 DGTVFLGRMLHL 410
+ + G+ L++
Sbjct: 383 NQQIVAGKPLYV 394
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S ++V +L +V+E L +F G ++ + + D T + G+A V F E +A
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 396 QHLDGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKR 448
+ L+ T GR+ ++ P K+ GN+ K +H I + L D F+ + S +
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 449 IILVKN 454
I +N
Sbjct: 157 IATDEN 162
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89
T EQ + F + G + L+ +GK + F F+ Y + + A A++ N++ + ++
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLY 290
Query: 90 VEKC 93
V +
Sbjct: 291 VGRA 294
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 159/427 (37%), Gaps = 103/427 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
+ V G+ + ++ P K GN I +K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN----------------------------IFIK 104
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-------GLVEFLQKNQAKAAFNSLAYT 506
NL D KAL++ F G +L G V F + A+ A +
Sbjct: 105 NL---DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--- 158
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566
G+ ++ G+ K + E E E G K+
Sbjct: 159 -------------NGMLLNDRKVFVGRFKSRKEREAELGARAKE---------------- 189
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
T +YIKN + ++ ++ F K GP SV V + K S
Sbjct: 190 -------------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK------S 230
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-----KSSNVA 681
G+GFV F E +A+ + L+ QI + R+ + +E + T +KR K +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRIT 289
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ G + V+N+ + + F FG + ++ M+ G +GFGFV F + EA
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEA 346
Query: 742 KRAMKAL 748
+A+ +
Sbjct: 347 TKAVTEM 353
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P +LY+ +L+ + TE + F GPI S+ V R + S+GY +V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPA 63
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+AL + + + + S R+ ++ K I ++N+
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRD------------PSLRKSGVGNIFIKNLDKSID 111
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F AFG + ++ GS +G+GFV F T+ A+RA++ +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKM 158
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 146/392 (37%), Gaps = 105/392 (26%)
Query: 206 PSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------F 257
PS PS P S + V +L V + L F P P+ S+R
Sbjct: 3 PSAPSYPMAS-----------LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS 51
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N-------------IKAK--------------HWKSQEDSVQFAEDI------------- 333
N + K H+++QE + + E +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 334 ---------AESG-------RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
AE G ++++N + ++ L +LF K+GP V + D E+ K+
Sbjct: 172 RFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
KGF V+F E A +A ++G G+ +++ G KV ER+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV---------GRAQKKV-----ERQTEL 276
Query: 438 ---FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----G 486
F Q+ + R R + VKNL L+ F PFG + V G G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F +A A + PLY+ A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KELFGKFGPALSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ F+ ++ KA+++ GK+LN Y G A E +K K
Sbjct: 232 GFGFVSFERHEDAQKAVDE----MNGKELN-------GKQIYVGRAQKKVERQTE-LKRK 279
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDK 376
+ ++D + + + ++V+NL + ++ L K F +G + A+V++ E +
Sbjct: 280 FEQMKQDRITRYQGV----NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM----EGGR 331
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-------TYVF 84
E+LK F + G V++ GK + F F+ + R + AQ A+D N YV
Sbjct: 205 ERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 85 SSRIKVEKCSNL 96
++ KVE+ + L
Sbjct: 265 RAQKKVERQTEL 276
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 159/427 (37%), Gaps = 103/427 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
+ V G+ + ++ P K GN I +K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN----------------------------IFIK 104
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-------GLVEFLQKNQAKAAFNSLAYT 506
NL D KAL++ F G +L G V F + A+ A +
Sbjct: 105 NL---DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--- 158
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566
G+ ++ G+ K + E E E G K+
Sbjct: 159 -------------NGMLLNDRKVFVGRFKSRKEREAELGARAKE---------------- 189
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
T +YIKN + ++ ++ F K GP SV V + K S
Sbjct: 190 -------------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK------S 230
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-----KSSNVA 681
G+GFV F E +A+ + L+ QI + R+ + +E + T +KR K +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRIT 289
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ G + V+N+ + + F FG + ++ M+ G +GFGFV F + EA
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEA 346
Query: 742 KRAMKAL 748
+A+ +
Sbjct: 347 TKAVTEM 353
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P +LY+ +L+ + TE + F GPI S+ V R + S+GY +V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPA 63
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+AL + + + + S R+ ++ K I ++N+
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRD------------PSLRKSGVGNIFIKNLDKSID 111
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F AFG + ++ GS +G+GFV F T+ A+RA++ +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKM 158
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 145/392 (36%), Gaps = 105/392 (26%)
Query: 206 PSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------F 257
PS PS P S + V +L V + L F P P+ S+R
Sbjct: 3 PSAPSYPMAS-----------LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS 51
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N-------------IKAK--------------HWKSQEDSVQFAEDI------------- 333
N + K H+++QE + + E +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 334 ---------AESG-------RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
AE G ++++N + ++ L LF K+GP V + D E+ K+
Sbjct: 172 RFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
KGF V+F E A +A ++G G+ +++ G KV ER+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV---------GRAQKKV-----ERQTEL 276
Query: 438 ---FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----G 486
F Q+ + R R + VKNL L+ F PFG + V G G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F +A A + PLY+ A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++LF FG V++ M SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKV---MTDESGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYV 263
Query: 762 EWAEE 766
A++
Sbjct: 264 GRAQK 268
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ F+ ++ KA+++ GK+LN Y G A E +K K
Sbjct: 232 GFGFVSFERHEDAQKAVDE----MNGKELN-------GKQIYVGRAQKKVERQTE-LKRK 279
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDK 376
+ ++D + + + ++V+NL + ++ L K F +G + A+V++ E +
Sbjct: 280 FEQMKQDRITRYQGV----NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM----EGGR 331
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-------TYVF 84
E+LK F + G V++ GK + F F+ + R + AQ A+D N YV
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 85 SSRIKVEKCSNL 96
++ KVE+ + L
Sbjct: 265 RAQKKVERQTEL 276
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 159/427 (37%), Gaps = 103/427 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
+ V G+ + ++ P K GN I +K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN----------------------------IFIK 104
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-------GLVEFLQKNQAKAAFNSLAYT 506
NL D KAL++ F G +L G V F + A+ A +
Sbjct: 105 NL---DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--- 158
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566
G+ ++ G+ K + E E E G K+
Sbjct: 159 -------------NGMLLNDRKVFVGRFKSRKEREAELGARAKE---------------- 189
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
T +YIKN + ++ ++ F K GP SV V + K S
Sbjct: 190 -------------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK------S 230
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-----KSSNVA 681
G+GFV F E +A+ + L+ QI + R+ + +E + T +KR K +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRIT 289
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ G + V+N+ + + F FG + ++ M+ G +GFGFV F + EA
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEA 346
Query: 742 KRAMKAL 748
+A+ +
Sbjct: 347 TKAVTEM 353
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P +LY+ +L+ + TE + F GPI S+ V R + S+GY +V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPA 63
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+AL + + + + S R+ ++ K I ++N+
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRD------------PSLRKSGVGNIFIKNLDKSID 111
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F AFG + ++ GS +G+GFV F T+ A+RA++ +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKM 158
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 145/392 (36%), Gaps = 105/392 (26%)
Query: 206 PSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------F 257
PS PS P S + V +L V + L F P P+ S+R
Sbjct: 3 PSAPSYPMAS-----------LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS 51
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N-------------IKAK--------------HWKSQEDSVQFAEDI------------- 333
N + K H+++QE + + E +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 334 ---------AESG-------RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
AE G ++++N + ++ L LF K+GP V + D E+ K+
Sbjct: 172 RFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
KGF V+F E A +A ++G G+ +++ G KV ER+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV---------GRAQKKV-----ERQTEL 276
Query: 438 ---FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----G 486
F Q+ + R R + VKNL L+ F PFG + V G G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F +A A + PLY+ A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++LF FG V++ M SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKV---MTDESGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYV 263
Query: 762 EWAEE 766
A++
Sbjct: 264 GRAQK 268
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ F+ ++ KA+++ GK+LN Y G A E +K K
Sbjct: 232 GFGFVSFERHEDAQKAVDE----MNGKELN-------GKQIYVGRAQKKVERQTE-LKRK 279
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDK 376
+ ++D + + + ++V+NL + ++ L K F +G + A+V++ E +
Sbjct: 280 FEQMKQDRITRYQGV----NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM----EGGR 331
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-------TYVF 84
E+LK F + G V++ GK + F F+ + R + AQ A+D N YV
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 85 SSRIKVEKCSNL 96
++ KVE+ + L
Sbjct: 265 RAQKKVERQTEL 276
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 93/427 (21%), Positives = 159/427 (37%), Gaps = 103/427 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
+ V GR + ++ P K GN I +K
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGN----------------------------IFIK 104
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-------GLVEFLQKNQAKAAFNSLAYT 506
NL D KAL++ F G +L G V F + A+ A + +
Sbjct: 105 NL---DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKM--- 158
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566
G+ ++ G+ K + E E E G K+
Sbjct: 159 -------------NGMLLNDRKVFVGRFKSRKEREAELGARAKEF--------------- 190
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
T +YIKN + ++ ++ F K GP SV V + K S
Sbjct: 191 --------------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK------S 230
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-----KSSNVA 681
G+GFV F E +A+ + ++ + + R+ + +E + T +KR K +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQ-TELKRKFEQMKQDRIT 289
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ G + V+N+ + + F FG + ++ M+ G +GFGFV F + EA
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEA 346
Query: 742 KRAMKAL 748
+A+ +
Sbjct: 347 TKAVTEM 353
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P +LY+ +L+ + TE + F GPI S+ V R + S+GY +V F
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPA 63
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+AL + + + + S R+ ++ K I ++N+
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRD------------PSLRKSGVGNIFIKNLDKSID 111
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F AFG + ++ GS +G+GFV F T+ A+RA+
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAI 155
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ F+ ++ KA+++ GK +N + + G A E +K K
Sbjct: 232 GFGFVSFERHEDAQKAVDE----MNGKDMN-------GKSMFVGRAQKKVERQTE-LKRK 279
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDK 376
+ ++D + + + ++V+NL + ++ L K F +G + A+V++ E +
Sbjct: 280 FEQMKQDRITRYQGV----NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM----EGGR 331
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------- 302
S+R + +G +I D+ NKAL S + G L+ +N +K G
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 303 --AADDNNNASMEN---IKAKHWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A D N + N + +KS+ E + E ++++N + ++ L ++
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG------TVFLGR 406
F KYGP V + D + K+KGF V+F E A +A ++G ++F+GR
Sbjct: 211 FGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGR 265
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN-------NT 81
+ E+LK F + G V++ GK + F F+ + R + AQ A+D N +
Sbjct: 202 MNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Query: 82 YVFSSRIKVEKCSNL 96
+V ++ KVE+ + L
Sbjct: 262 FVGRAQKKVERQTEL 276
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ VRNL + ++DL K FE++GP+ ++ LP D T +GF V F+ P A A H+
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 399 DGTVFLGRMLHLI 411
DG + LGR L ++
Sbjct: 98 DGYLLLGRELTVV 110
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ +LVRN+ +Q ++ + F+ FG +K + LP+ +G RGFGFV+F+ +A A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYY-TGDPRGFGFVQFMDPADAADA- 93
Query: 746 KALCQSTHLYGRRLVLEWAEE 766
K L GR L + +AEE
Sbjct: 94 KHHMDGYLLLGRELTVVFAEE 114
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR---KKDPKSPGQFLSMGYGFVQF 634
T+L ++NL + ++ +R+ F++ GP+ + + R DP+ G+GFVQF
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPR--------GFGFVQF 84
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 93/435 (21%), Positives = 169/435 (38%), Gaps = 94/435 (21%)
Query: 327 VQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
V A+ + ++ +L VTE L LF+ + V + D + ++ G+A + F
Sbjct: 39 VVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFS 97
Query: 387 MPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARS 446
P A +A + L+ T R + ++ +S R +
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIM------------------LSNR-----DPSTRLSG 134
Query: 447 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT--------GLVEFLQKNQAKA 498
K I +KNL D KALFE F G +L + G V+F ++ A+A
Sbjct: 135 KGNIFIKNL---DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQA 191
Query: 499 AFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDN 558
A + L + +++ G F +E+++
Sbjct: 192 AIDKLNGMLMNDKQVFV-----GHFIRRQERAR--------------------------- 219
Query: 559 QQGVPEVEENVEEDEEREPEPD-TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD 617
+E P P T +Y+KNL ED +R+ F K G I+S V R +
Sbjct: 220 --------------DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS 265
Query: 618 PKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-- 675
S +GFV F E+ A++ + SL + + + R+ + E E ++
Sbjct: 266 GN------SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE 319
Query: 676 --KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 733
+ + K G+ + ++N+ +++E+F +G + ++ + G+ RGFGFV
Sbjct: 320 QERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV--MLNPQGMSRGFGFV 377
Query: 734 EFITKNEAKRAMKAL 748
+ EA RA+ +
Sbjct: 378 AYSNPEEALRALSEM 392
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 42/302 (13%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQ 286
I +KNL A + D KA F+ + F +C A++ + K
Sbjct: 138 IFIKNLDASI---DNKALFE--------------TFSSFGTILSCKVAMDVT---GRSKG 177
Query: 287 LNIYKYSKDNSAKYSGAADDNNNASMENIK---AKHW-KSQEDSVQFAEDIAESGRIFVR 342
++ K+ SA+ AA D N + N K H+ + QE + ++V+
Sbjct: 178 YGFVQFEKEESAQ---AAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVK 234
Query: 343 NLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTV 402
NL + ED+L K F K+G ++ ++ D ++ ++ F V F E A A + ++G
Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGIS 293
Query: 403 FLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLP 461
+L++ + K E E + K + +++ F + A + +KNL
Sbjct: 294 LGDDVLYVGRAQKKSEREEELRRK----FEQERINRFEKSQGAN----LYLKNLDDSVDD 345
Query: 462 TDLKALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 516
LK +F +G++ +V++ P G++ G V + +A A + + PLY+
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 517 WA 518
A
Sbjct: 406 LA 407
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 82/399 (20%), Positives = 141/399 (35%), Gaps = 110/399 (27%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK 316
LG AYI F + + +A+ N + + + I ++D S + SG
Sbjct: 89 LGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSG-------------- 134
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
G IF++NL ++ L + F +G + + +D T +
Sbjct: 135 -------------------KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGR 174
Query: 377 TKGFALVTFLMPEHATQAYQHLDGT------VFLGRMLHLIPGKPKENEGNVDGKVHCCI 430
+KG+ V F E A A L+G VF+G H I + + + N
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG---HFIRRQERARDENTP------- 224
Query: 431 SERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLV-----PPYGIT 485
+ R + + VKNLP +L+ F FG + +V
Sbjct: 225 TPRFTNVY-------------VKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCF 271
Query: 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEG 545
G V F A +A + + LY+ G+ ++K+E E E
Sbjct: 272 GFVNFECTEAAASAVEKMNGISLGDDVLYV----------------GRAQKKSEREEELR 315
Query: 546 EEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCG 605
+ ++E + QG LY+KNL+ + ++ ++ F + G
Sbjct: 316 RKFEQERINRFEKSQG-------------------ANLYLKNLDDSVDDEKLKEMFSEYG 356
Query: 606 PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ S V Q +S G+GFV + E +AL
Sbjct: 357 NVTSSKVMLNP------QGMSRGFGFVAYSNPEEALRAL 389
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ ++++NL +V ++ L ++F +YG + + ++ + ++GF V + PE A +
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALR 387
Query: 394 AYQHLDGTVFLGRMLHLIPGKPKEN 418
A ++G + + L++ + KE+
Sbjct: 388 ALSEMNGKMIGRKPLYIALAQRKED 412
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
+ E+LK F E G VT ++ +G R F F+ Y ++A AL N +
Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 168/424 (39%), Gaps = 85/424 (20%)
Query: 303 AADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP 362
A +N N + +N A + E ++ S ++V L +VTE L +LF G
Sbjct: 10 APAENTNGTPDNAPAPEVTAVEAPATTSQ--PHSASLYVGELDPSVTEAMLYELFSSIGQ 67
Query: 363 LAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNV 422
+A + + D T ++ G+A V + H +A L+ T LI GKP
Sbjct: 68 VASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYT--------LIKGKP------- 112
Query: 423 DGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLV--- 479
C I + D + + + +KNL D KAL + F G +L
Sbjct: 113 -----CRIMWSQRDP---ALRKTGQGNVFIKNL---DSAIDNKALHDTFAAFGNILSCKV 161
Query: 480 --PPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEK 537
+G++ F+ A+AA N++ + G+ K+ G
Sbjct: 162 AQDEFGVSKGYGFVHYETAEAANNAIKHVN-------------GMLLNDKKVFVG----- 203
Query: 538 NEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSI 597
+ +++D Q E++ N T +YIKN++ ++
Sbjct: 204 -------------HHISKKDRQSKFEEMKANF-----------TNIYIKNIDPEVEDEEF 239
Query: 598 RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657
R+ F+K G I S T++R + K S G+GFV F T ES A++ + + + ++
Sbjct: 240 RKLFEKFGEITSATLSRDSEGK------SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKL 293
Query: 658 ELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELK 713
+ R+ + E E K+ + +K G + V+N+ ++ ELF +G +
Sbjct: 294 YVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
Query: 714 FVRL 717
++
Sbjct: 354 SAKV 357
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF-LSMGYGFVQFYTRESLN 641
++IKNL+ ++ F G I S VA+ +F +S GYGFV + T E+ N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-------EFGVSKGYGFVHYETAEAAN 184
Query: 642 QALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
A+K + L++ ++ + S ++ +S+ +K +N I ++NI + +
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN--------IYIKNIDPEVED 236
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL----CQSTHLY 755
E +LF+ FGE+ L + G RGFGFV F T A+ A++ + +S LY
Sbjct: 237 EEFRKLFEKFGEITSATLSRD--SEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLY 294
Query: 756 GRR 758
R
Sbjct: 295 VGR 297
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 97/441 (21%), Positives = 160/441 (36%), Gaps = 118/441 (26%)
Query: 201 SKDTAPSDPSVPPVSKAPVHKRQYHT--IVVKNLPAGVKKKDLKAYFKPLP-LASVRTT- 256
+ D AP+ P V V +AP Q H+ + V L V + L F + +AS+R
Sbjct: 18 TPDNAPA-PEVTAV-EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 257 ------FLGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNN 309
LG AY+ + D + +AL++ N + KGK I +D + + +G
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTG------- 128
Query: 310 ASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP 369
G +F++NL + L F +G + +
Sbjct: 129 --------------------------QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 370 IDKETDKTKGFALVTFLMPEHATQAYQHLDGT------VFLGRMLHLIPGKPKENEGNVD 423
D E +KG+ V + E A A +H++G VF+G H I K ++++
Sbjct: 163 QD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG---HHISKKDRQSK---- 214
Query: 424 GKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP--- 480
E K + N I +KN+ + + LFE FG++ +
Sbjct: 215 ------FEEMKANFTN----------IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS 258
Query: 481 ---PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEK 537
G G V F A+AA + + + LY+ G+ ++K
Sbjct: 259 EGKSRGF-GFVNFSTHESAQAAVEEMNDKEVRSQKLYV----------------GRAQKK 301
Query: 538 NEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSI 597
+E E E ++ + + QGV LY+KNL + +D +
Sbjct: 302 HEREEELRKQYEAARMEKASKYQGV-------------------NLYVKNLTDDVDDDKL 342
Query: 598 RRHFKKCGPIASVTVARKKDP 618
R F G I S V R P
Sbjct: 343 RELFGPYGTITSAKVMRDTAP 363
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 551 ENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610
ENT + PEV VE +LY+ L+ + TE + F G +AS+
Sbjct: 13 ENTNGTPDNAPAPEVTA-VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 71
Query: 611 TVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEA 670
V R + S+GY +V + +AL L + + + S R+
Sbjct: 72 RVCRDAVTRR-----SLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRD----- 121
Query: 671 TTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 730
RK+ + ++N+ + + F AFG + ++ + G+ +G+
Sbjct: 122 -PALRKTGQ------GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF--GVSKGY 172
Query: 731 GFVEFITKNEAKRAMK 746
GFV + T A A+K
Sbjct: 173 GFVHYETAEAANNAIK 188
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
++ E+ + FE+ G +T L +EGK R F F+ + + AQAA++ N+ V S +
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQK 292
Query: 88 IKVEKC 93
+ V +
Sbjct: 293 LYVGRA 298
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y KN++ T+D + F K G I S + R +D K S G+GFV F
Sbjct: 227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGK------SKGFGFVNFEDHNEA 280
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L +S ++ + R+ + E E + K+ +AK G + ++NIP
Sbjct: 281 QKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPES 340
Query: 697 AKQSEVEELFKAFGEL---KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH 753
+ E F FG + K +R P SG+ RGFGFV + EA +A+ +
Sbjct: 341 YDDERLREEFAPFGAITSCKIMRAP-----SGVSRGFGFVCYSAPEEANKAVSEM-NGKM 394
Query: 754 LYGRRLVLEWAEEAD 768
L R L + A+ D
Sbjct: 395 LDNRPLYVALAQRKD 409
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 117/301 (38%), Gaps = 41/301 (13%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQ 286
I +KNL AG+ K L F F + +C A N+ S
Sbjct: 137 IFIKNLDAGIDNKALHDTFA-----------------AFGNILSCKVATNETGSLG---- 175
Query: 287 LNIYKYSKDNSAKYSGAADDNNNASMENIK----AKHWKSQEDSVQFAEDIAESGRIFVR 342
Y + +A+ + AA + N + N K H +E + E A ++ +
Sbjct: 176 ---YGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAK 232
Query: 343 NLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTV 402
N+ VT+D+ KLF K+G + +L D E K+KGF V F A +A L +
Sbjct: 233 NVDPEVTDDEFEKLFTKFGKITSCVLQRD-EDGKSKGFGFVNFEDHNEAQKAVDELHDSD 291
Query: 403 FLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPT 462
F G+ L + + K + + KL F V + +KN+P
Sbjct: 292 FKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN-------LYLKNIPESYDDE 344
Query: 463 DLKALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 517
L+ F PFG + +++ P G++ G V + +A A + + PLY+
Sbjct: 345 RLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVAL 404
Query: 518 A 518
A
Sbjct: 405 A 405
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 24/199 (12%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ ++ F G I S VA + S+GYGFV + T E+
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATNET-------GSLGYGFVHYETAEAAEA 189
Query: 643 ALKVLQNSSLDEHQI----ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
A+K + L++ ++ + R R + E T + + + +N+ +
Sbjct: 190 AIKHVNGMLLNDKKVYVGHHIPRKERQAKIEET----------RANFTNVYAKNVDPEVT 239
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758
E E+LF FG++ L + G +GFGFV F NEA++A+ L + G++
Sbjct: 240 DDEFEKLFTKFGKITSCVLQRDE--DGKSKGFGFVNFEDHNEAQKAVDEL-HDSDFKGQK 296
Query: 759 LVLEWAEEADNVEDIRKRT 777
L + A++ E+ +R+
Sbjct: 297 LFVARAQKKSEREEELRRS 315
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 22/159 (13%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+T+LY+ L+ + TE + F G +AS+ V R + S+GY +V F
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRR-----SLGYAYVNFLNAAD 100
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG-SKILVRNIPFQAK 698
+A++ L S + + S R+ ++TG I ++N+
Sbjct: 101 GERAMEQLNYSLIRNRPCRIMWSQRD-------------PALRRTGQGNIFIKNLDAGID 147
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 737
+ + F AFG + ++ GS G+GFV + T
Sbjct: 148 NKALHDTFAAFGNILSCKVATNETGS---LGYGFVHYET 183
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A + ++V L +VTE L ++F G +A + + D T ++ G+A V FL
Sbjct: 42 DAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADG 101
Query: 392 TQAYQHLDGTVFLGRMLHLI-----PGKPKENEGNV 422
+A + L+ ++ R ++ P + +GN+
Sbjct: 102 ERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNI 137
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I+V NLSY VT++D++ +F +YG + V+LP D+ET + +GFA V T A + L
Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGL 62
Query: 399 DGTVFLGRMLHLIPGKPKEN 418
DG ++GR L + KPKE+
Sbjct: 63 DGAEWMGRDLKVNKAKPKED 82
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 99/194 (51%), Gaps = 17/194 (8%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KN++ +E+ +++ F G I S+ + + + K S G+GFV + E+
Sbjct: 233 TNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGK------SKGFGFVNYEGHEAA 286
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN-----VAKQTGSKILVRNIPF 695
+A++ L + ++ +I + R+ + E +K++ N ++K G + ++N+
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRE-RMEELKKQYENTRLEKLSKYQGVNLFIKNLDD 345
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHL 754
++EE FK FG + R+ MV +G +GFGFV F + EA +A+ + Q
Sbjct: 346 TIDSEKLEEEFKPFGTITSARV---MVDETGKSKGFGFVCFSSPEEATKAITEMNQRM-F 401
Query: 755 YGRRLVLEWAEEAD 768
+G+ L + A+ D
Sbjct: 402 FGKPLYVALAQRKD 415
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 13/207 (6%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
KH ++ +F E A I+V+N+ +E+DL KLF YG + + L D E K
Sbjct: 213 GKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GK 271
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
+KGF V + E A +A + L+ G+ +++ + K K + KL
Sbjct: 272 SKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLS 331
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLVEFL 491
+ V + +KNL L+ F+PFG + RV+V G + G V F
Sbjct: 332 KYQGVN-------LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFS 384
Query: 492 QKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + F PLY+ A
Sbjct: 385 SPEEATKAITEMNQRMFFGKPLYVALA 411
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 115/264 (43%), Gaps = 42/264 (15%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL---------GMAYIGFKDEKNC 271
K + I VKN+ ++DLK F P ++ + +L G ++ ++ +
Sbjct: 229 KANFTNIYVKNIDLEYSEEDLKKLFTPY--GAITSIYLEKDAEGKSKGFGFVNYEGHEAA 286
Query: 272 NKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAE 331
KA+ + K++N K Y G A ME +K ++ ++ + + +
Sbjct: 287 VKAVEE----LNDKEINGQKI-------YVGRAQKKRE-RMEELKKQYENTRLEKLSKYQ 334
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
+ +F++NL T+ + L + F+ +G + + +D ET K+KGF V F PE A
Sbjct: 335 GV----NLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEA 389
Query: 392 TQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL 451
T+A ++ +F G+ L++ + K+ V E+++ A NQ+ R +
Sbjct: 390 TKAITEMNQRMFFGKPLYVALAQRKD--------VRRSQLEQQIQARNQM---RMQNAAA 438
Query: 452 VKNLPYRTLPTDL---KALFEPFG 472
+P + +P + F P G
Sbjct: 439 TGGIPGQFIPPMFYGQQGFFPPNG 462
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 162/428 (37%), Gaps = 96/428 (22%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V L V + L F P+ ++S+R LG AY+ + ++ KA+ +
Sbjct: 53 SLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEE 112
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAES 336
N S +G+ I +D SA+ SG
Sbjct: 113 LNYSPIEGRPCRIMWSQRDPSARRSG---------------------------------D 139
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL + L F +G + + D + ++K F V + E A A +
Sbjct: 140 GNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIE 198
Query: 397 HLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLP 456
+++G + R + + GK IS++ ++ + ++A I VKN+
Sbjct: 199 NVNGMLLNDREVFV-------------GK---HISKKDRESKFEEIKANFTNI-YVKNID 241
Query: 457 YRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLE 516
DLK LF P+G + + +L+K+ A+ + +
Sbjct: 242 LEYSEEDLKKLFTPYGAITSI------------YLEKD-AEGKSKGFGFVNY-------- 280
Query: 517 WAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEERE 576
EG A K + +KE N ++ G +KK EE +Q EN E+
Sbjct: 281 ---EGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQ-----YENTRL-EKLS 331
Query: 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYT 636
L+IKNL+ + + FK G I S V + K S G+GFV F +
Sbjct: 332 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK------SKGFGFVCFSS 385
Query: 637 RESLNQAL 644
E +A+
Sbjct: 386 PEEATKAI 393
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 98/200 (49%), Gaps = 20/200 (10%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D ++IKNL+ ++ F G I S VA GQ S +GFV + T E+
Sbjct: 139 DGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATD----DMGQ--SKCFGFVHYETAEA 192
Query: 640 LNQALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697
A++ + L++ ++ + + S ++ ES+ +K +N I V+NI +
Sbjct: 193 AEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTN--------IYVKNIDLEY 244
Query: 698 KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ ++++LF +G + + L K G +GFGFV + A +A++ L + G+
Sbjct: 245 SEEDLKKLFTPYGAITSIYLEKD--AEGKSKGFGFVNYEGHEAAVKAVEEL-NDKEINGQ 301
Query: 758 RLVLEWAEEA-DNVEDIRKR 776
++ + A++ + +E+++K+
Sbjct: 302 KIYVGRAQKKRERMEELKKQ 321
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89
++E LK F G +T + L+ EGK + F F+ Y + A A++ N+ + +I
Sbjct: 245 SEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIY 304
Query: 90 VEKC 93
V +
Sbjct: 305 VGRA 308
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/440 (23%), Positives = 180/440 (40%), Gaps = 88/440 (20%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V L+ +V E L ++F G ++ + + D T K+ G+A V F ++H
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNF---------HKHA 110
Query: 399 DGTVFLGRMLH-LIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
DG+ + + + L+ G+P C I + D + I +KNL
Sbjct: 111 DGSRAIEELNYSLVDGRP------------CRIMWSQRDP---SLRRNGDGNIFIKNL-- 153
Query: 458 RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 517
D KAL + F GR+ ++ V + Q+K F + Y + +E
Sbjct: 154 -HPAIDNKALHDTFSAFGRI------LSCKVATDELGQSKC-FGFVHYETAEAAEAAIEN 205
Query: 518 APEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREP 577
G+ +E GK K + E + EE K N
Sbjct: 206 V-NGMLLNDREVFVGKHVSKRDRESKF--EEMKANF------------------------ 238
Query: 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTR 637
T +Y+KNL FK GP+ SV + ++ KS G+GFV F
Sbjct: 239 ---TNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKS------RGFGFVNFENH 289
Query: 638 ESLNQALKVLQNSSLDEHQIELKRSNRNLES--------EATTVKRKSSNVAKQTGSKIL 689
ES A+K + + +D ++ + R+ + E E+T +++ ++K G +
Sbjct: 290 ESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEK----LSKYQGVNLF 345
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV-GSGLHRGFGFVEFITKNEAKRAMKAL 748
V+N+ ++EE FK FG + R+ MV +G +GFGFV F + EA +A+ +
Sbjct: 346 VKNLDDSIDSEKLEEEFKPFGTITSARV---MVDDAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 749 CQSTHLYGRRLVLEWAEEAD 768
Q + G+ L + A+ D
Sbjct: 403 NQRM-IQGKPLYVALAQRKD 421
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
KH ++ +F E A ++V+NL+ V ++F+ +GP+ V L D+E K
Sbjct: 219 GKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GK 277
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
++GF V F E A A + ++ G+ L++ + K + +++ KL
Sbjct: 278 SRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLS 337
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLVEFL 491
+ V + VKNL L+ F+PFG + RV+V G + G V F
Sbjct: 338 KYQGVN-------LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFS 390
Query: 492 QKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + + PLY+ A
Sbjct: 391 SPEEATKAITEMNQRMIQGKPLYVALA 417
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVR--TTFLGMAY-IGFKDEKNCNKALN 276
K + + VKNL V + FKP P+ SV T G + GF + +N ALN
Sbjct: 235 KANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALN 294
Query: 277 KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAES 336
K K++ D Y G A ++ +K + ++ + + + +
Sbjct: 295 AVKEM-NDKEI-------DGQKLYVGRAQKKRE-RLDELKRLYESTRLEKLSKYQGV--- 342
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
+FV+NL ++ + L + F+ +G + + +D + K+KGF V F PE AT+A
Sbjct: 343 -NLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAIT 400
Query: 397 HLDGTVFLGRMLHL 410
++ + G+ L++
Sbjct: 401 EMNQRMIQGKPLYV 414
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 25 FIYKITQEQLKAKFEEK----GTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN 80
++ + E AKFEE G VT V L+ EGK R F F+ + + A A+ N+
Sbjct: 242 YVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMND 301
Query: 81 -------TYVFSS---RIKVEKCSNLGDTTKPKSWSKY 108
YV + R ++++ L ++T+ + SKY
Sbjct: 302 KEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKY 339
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/427 (22%), Positives = 158/427 (37%), Gaps = 103/427 (24%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L TE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453
+ V G+ + ++ P K GN I +K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN----------------------------IFIK 104
Query: 454 NLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT-------GLVEFLQKNQAKAAFNSLAYT 506
NL D KAL++ F G +L G V F + A+ A +
Sbjct: 105 NL---DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM--- 158
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566
G+ ++ G+ K + E E E G K+
Sbjct: 159 -------------NGMLLNDRKVFVGRFKSRKEREAELGARAKE---------------- 189
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
T +YIKN + ++ ++ F K GP SV V + K S
Sbjct: 190 -------------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK------S 230
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR-----KSSNVA 681
G+GFV F E +A+ + L+ QI + R+ + +E + T +KR K +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRIT 289
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ G + V+N+ + + F FG + ++ M+ G +GFGFV F + EA
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEA 346
Query: 742 KRAMKAL 748
+A+ +
Sbjct: 347 TKAVTEM 353
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P +LY+ +L+ ++TE + F GPI S+ V R + S+GY +V F
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRR-----SLGYAYVNFQQPA 63
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+AL + + + + S R+ ++ K I ++N+
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRD------------PSLRKSGVGNIFIKNLDKSID 111
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ + F AFG + ++ GS +G+GFV F T+ A+RA++ +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKM 158
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++LF FG V++ M SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKV---MTDESGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYV 263
Query: 762 EWAEE 766
A++
Sbjct: 264 GRAQK 268
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 144/392 (36%), Gaps = 105/392 (26%)
Query: 206 PSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------F 257
PS PS P S + V +L + L F P P+ S+R
Sbjct: 3 PSAPSYPMAS-----------LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRS 51
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N-------------IKAK--------------HWKSQEDSVQFAEDI------------- 333
N + K H+++QE + + E +
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 334 ---------AESG-------RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
AE G ++++N + ++ L LF K+GP V + D E+ K+
Sbjct: 172 RFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
KGF V+F E A +A ++G G+ +++ G KV ER+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV---------GRAQKKV-----ERQTEL 276
Query: 438 ---FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----G 486
F Q+ + R R + VKNL L+ F PFG + V G G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F +A A + PLY+ A
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 22/161 (13%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ F+ ++ KA+++ GK+LN Y G A E +K K
Sbjct: 232 GFGFVSFERHEDAQKAVDE----MNGKELN-------GKQIYVGRAQKKVERQTE-LKRK 279
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDK 376
+ ++D + + + ++V+NL + ++ L K F +G + A+V++ E +
Sbjct: 280 FEQMKQDRITRYQGV----NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM----EGGR 331
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-------TYVF 84
E+LK F + G V++ GK + F F+ + R + AQ A+D N YV
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 85 SSRIKVEKCSNL 96
++ KVE+ + L
Sbjct: 265 RAQKKVERQTEL 276
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 80/411 (19%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V +L VTED L K F GPL + D T G+ V F P A A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
+ G+ L+ +P + RK N I +KNL
Sbjct: 82 DLINGKPFRLMWSQPDDRL-------------RKSGVGN----------IFIKNLDKSID 118
Query: 461 PTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
L LF FG++ +V+ G K A F+SLA W
Sbjct: 119 NRALFYLFSAFGNILSCKVVCDDNG--------SKGYAYVHFDSLAAAN------RAIWH 164
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
GV ++ G+ K PE E E R+
Sbjct: 165 MNGVRLNNRQVYVGRFK--------------------------FPE--ERAAEVRTRDRA 196
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +++KN+ + ++ ++ F + GP SV V R KS G+GFV++ T E
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK------GFGFVRYETHE 250
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT----GSKILVRNIP 694
+ +A+ L S+D + + R+ + +E A +R K+ G I ++N+
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ M+ G +GFG V F + EA +A+
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKV---MMEVGQGKGFGVVCFSSFEEATKAV 358
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-------SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ELF +G + V++ + SG +GFGFV + T A++A+ L
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL 259
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
I+++NL T+ ++ L + F +G + A+V++ E + KGF +V F E AT+A
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM----EVGQGKGFGVVCFSSFEEATKAVD 359
Query: 397 HLDGTVFLGRMLHLIPGKPK 416
++G + + LH+ G+ +
Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N+ + ++ L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHL 410
+A L G G++L++
Sbjct: 253 QKAVLDLHGKSIDGKVLYV 271
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 26/175 (14%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ +L+ + TED + + F+ GP+ + R +SP +GYG+V F AL
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSP-----LGYGYVNFRFPADAEWAL 76
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+ ++ L + S+ RKS I ++N+ +
Sbjct: 77 NTMNFDLINGKPFRL------MWSQPDDRLRKSGV------GNIFIKNLDKSIDNRALFY 124
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
LF AFG + ++ GS +G+ +V F + A RA+ H+ G RL
Sbjct: 125 LFSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 80/411 (19%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V +L VTED L K F GPL + D T G+ V F P A A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
+ G+ L+ +P + RK N I +KNL
Sbjct: 82 DLINGKPFRLMWSQPDDRL-------------RKSGVGN----------IFIKNLDKSID 118
Query: 461 PTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
L LF FG++ +V+ G K A F+SLA W
Sbjct: 119 NRALFYLFSAFGNILSCKVVCDDNG--------SKGYAYVHFDSLAAAN------RAIWH 164
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
GV ++ G+ K PE E E R+
Sbjct: 165 MNGVRLNNRQVYVGRFK--------------------------FPE--ERAAEVRTRDRA 196
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +++KN+ + ++ ++ F + GP SV V R KS G+GFV++ T E
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK------GFGFVRYETHE 250
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT----GSKILVRNIP 694
+ +A+ L S+D + + R+ + +E A +R K+ G I ++N+
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ M+ G +GFG V F + EA +A+
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKV---MMEVGQGKGFGVVCFSSFEEATKAV 358
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-------SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ELF +G + V++ + SG +GFGFV + T A++A+ L
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL 259
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
I+++NL T+ ++ L + F +G + A+V++ E + KGF +V F E AT+A
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM----EVGQGKGFGVVCFSSFEEATKAVD 359
Query: 397 HLDGTVFLGRMLHLIPGKPK 416
++G + + LH+ G+ +
Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N+ + ++ L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHL 410
+A L G G++L++
Sbjct: 253 QKAVLDLHGKSIDGKVLYV 271
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 26/175 (14%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ +L+ + TED + + F+ GP+ + R +SP +GYG+V F AL
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSP-----LGYGYVNFRFPADAEWAL 76
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+ ++ L + S+ RKS I ++N+ +
Sbjct: 77 NTMNFDLINGKPFRL------MWSQPDDRLRKSGV------GNIFIKNLDKSIDNRALFY 124
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
LF AFG + ++ GS +G+ +V F + A RA+ H+ G RL
Sbjct: 125 LFSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 80/411 (19%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V +L VTED L K F GPL + D T G+ V F P A A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
+ G+ L+ +P + RK N I +KNL
Sbjct: 82 DLINGKPFRLMWSQPDDRL-------------RKSGVGN----------IFIKNLDKSID 118
Query: 461 PTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
L LF FG++ +V+ G K A F+SLA W
Sbjct: 119 NRALFYLFSAFGNILSCKVVCDDNG--------SKGYAYVHFDSLAAAN------RAIWH 164
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
GV ++ G+ K PE E E R+
Sbjct: 165 MNGVRLNNRQVYVGRFK--------------------------FPE--ERAAEVRTRDRA 196
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +++KN+ + ++ ++ F + GP SV V R KS G+GFV++ T E
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK------GFGFVRYETHE 250
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT----GSKILVRNIP 694
+ +A+ L S+D + + R+ + +E A +R K+ G I ++N+
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ M+ G +GFG V F + EA +A+
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKV---MMEVGQGKGFGVVCFSSFEEATKAV 358
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-------SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ELF +G + V++ + SG +GFGFV + T A++A+ L
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL 259
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
I+++NL T+ ++ L + F +G + A+V++ E + KGF +V F E AT+A
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM----EVGQGKGFGVVCFSSFEEATKAVD 359
Query: 397 HLDGTVFLGRMLHLIPGKPK 416
++G + + LH+ G+ +
Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N+ + ++ L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHL 410
+A L G G++L++
Sbjct: 253 QKAVLDLHGKSIDGKVLYV 271
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 26/175 (14%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ +L+ + TED + + F+ GP+ + R +SP +GYG+V F AL
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSP-----LGYGYVNFRFPADAEWAL 76
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+ ++ L + S+ RKS I ++N+ +
Sbjct: 77 NTMNFDLINGKPFRL------MWSQPDDRLRKSGV------GNIFIKNLDKSIDNRALFY 124
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
LF AFG + ++ GS +G+ +V F + A RA+ H+ G RL
Sbjct: 125 LFSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 80/411 (19%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V +L VTED L K F GPL + D T G+ V F P A A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
+ G+ L+ +P + RK N I +KNL
Sbjct: 82 DLINGKPFRLMWSQPDDRL-------------RKSGVGN----------IFIKNLDKSID 118
Query: 461 PTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
L LF FG++ +V+ G K A F+SLA W
Sbjct: 119 NRALFYLFSAFGNILSCKVVCDDNG--------SKGYAYVHFDSLAAAN------RAIWH 164
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
GV ++ G+ K PE E E R+
Sbjct: 165 MNGVRLNNRQVYVGRFK--------------------------FPE--ERAAEVRTRDRA 196
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +++KN+ + ++ ++ F + GP SV V R KS G+GFV++ T E
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK------GFGFVRYETHE 250
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT----GSKILVRNIP 694
+ +A+ L S+D + + R+ + +E A +R K+ G I ++N+
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ M+ G +GFG V F + EA +A+
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKV---MMEVGQGKGFGVVCFSSFEEATKAV 358
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-------SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ELF +G + V++ + SG +GFGFV + T A++A+ L
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL 259
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
I+++NL T+ ++ L + F +G + A+V++ E + KGF +V F E AT+A
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM----EVGQGKGFGVVCFSSFEEATKAVD 359
Query: 397 HLDGTVFLGRMLHLIPGKPK 416
++G + + LH+ G+ +
Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N+ + ++ L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHL 410
+A L G G++L++
Sbjct: 253 QKAVLDLHGKSIDGKVLYV 271
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 26/175 (14%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ +L+ + TED + + F+ GP+ + R +SP +GYG+V F AL
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSP-----LGYGYVNFRFPADAEWAL 76
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+ ++ L + S+ RKS I ++N+ +
Sbjct: 77 NTMNFDLINGKPFRL------MWSQPDDRLRKSGV------GNIFIKNLDKSIDNRALFY 124
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
LF AFG + ++ GS +G+ +V F + A RA+ H+ G RL
Sbjct: 125 LFSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 80/411 (19%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V +L VTED L K F GPL + D T G+ V F P A A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
+ G+ L+ +P + RK N I +KNL
Sbjct: 82 DLINGKPFRLMWSQPDDRL-------------RKSGVGN----------IFIKNLDKSID 118
Query: 461 PTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
L LF FG++ +V+ G K A F+SLA W
Sbjct: 119 NRALFYLFSAFGNILSCKVVCDDNG--------SKGYAYVHFDSLAAAN------RAIWH 164
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
GV ++ G+ K PE E E R+
Sbjct: 165 MNGVRLNNRQVYVGRFK--------------------------FPE--ERAAEVRTRDRA 196
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +++KN+ + ++ ++ F + GP SV V R KS G+GFV++ T E
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK------GFGFVRYETHE 250
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT----GSKILVRNIP 694
+ +A+ L S+D + + R+ + +E A +R K+ G I ++N+
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ M+ G +GFG V F + EA +A+
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKV---MMEVGQGKGFGVVCFSSFEEATKAV 358
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-------SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ELF +G + V++ + SG +GFGFV + T A++A+ L
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL 259
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
I+++NL T+ ++ L + F +G + A+V++ E + KGF +V F E AT+A
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM----EVGQGKGFGVVCFSSFEEATKAVD 359
Query: 397 HLDGTVFLGRMLHLIPGKPK 416
++G + + LH+ G+ +
Sbjct: 360 EMNGRIVGSKPLHVTLGQAR 379
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N+ + ++ L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHL 410
+A L G G++L++
Sbjct: 253 QKAVLDLHGKSIDGKVLYV 271
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 26/175 (14%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ +L+ + TED + + F+ GP+ + R +SP +GYG+V F AL
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSP-----LGYGYVNFRFPADAEWAL 76
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+ ++ L + S+ RKS I ++N+ +
Sbjct: 77 NTMNFDLINGKPFRL------MWSQPDDRLRKSGV------GNIFIKNLDKSIDNRALFY 124
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
LF AFG + ++ GS +G+ +V F + A RA+ H+ G RL
Sbjct: 125 LFSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 80/411 (19%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V +L VTED L K F GPL + D T G+ V F P A A ++
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
+ G+ L+ +P + RK N I +KNL
Sbjct: 82 DLINGKPFRLMWSQPDDRL-------------RKSGVGN----------IFIKNLDKSID 118
Query: 461 PTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
L LF FG++ +V+ G K A F+SLA W
Sbjct: 119 NRALFYLFSAFGNILSCKVVCDDNG--------SKGYAYVHFDSLAAAN------RAIWH 164
Query: 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPE 578
GV ++ G+ K PE E E R+
Sbjct: 165 MNGVRLNNRQVYVGRFK--------------------------FPE--ERAAEVRTRDRA 196
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T +++KN+ + ++ ++ F + GP SV V R KS G+GFV++ T E
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK------GFGFVRYETHE 250
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT----GSKILVRNIP 694
+ +A+ L S+D + + R+ + +E A +R K+ G I ++N+
Sbjct: 251 AAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ M+ G +GFG V F + EA +A+
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKV---MMEVGQGKGFGVVCFSSFEEATKAV 358
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-------SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ELF +G + V++ + SG +GFGFV + T A++A+ L
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL 259
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
I+++NL T+ ++ L + F +G + A+V++ E + KGF +V F E AT+A
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM----EVGQGKGFGVVCFSSFEEATKAVD 359
Query: 397 HLDGTVFLGRMLHLIPGKPK 416
++G V + LH+ G+ +
Sbjct: 360 EMNGRVVGSKPLHVTLGQAR 379
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N+ + ++ L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHL 410
+A L G G++L++
Sbjct: 253 QKAVLDLHGKSIDGKVLYV 271
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 26/175 (14%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+ +L+ + TED + + F+ GP+ + R +SP +GYG+V F AL
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSP-----LGYGYVNFRFPADAEWAL 76
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+ ++ L + S+ RKS I ++N+ +
Sbjct: 77 NTMNFDLINGKPFRL------MWSQPDDRLRKSGV------GNIFIKNLDKSIDNRALFY 124
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
LF AFG + ++ GS +G+ +V F + A RA+ H+ G RL
Sbjct: 125 LFSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I+V NLSY V+E DLT +F +YG + V LP D+ET + +GF V T A + L
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 399 DGTVFLGRMLHLIPGKPKEN 418
DG ++GR L + KP+EN
Sbjct: 63 DGAEWMGRDLKVNKAKPREN 82
Score = 38.5 bits (88), Expect = 0.22, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
I V N+ + ++++ +F +G +K V+LP +G RGFGFVE E A++A
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDR-ETGRMRGFGFVELEADAEETAAIEA 61
Query: 748 LCQSTHLYGRRLVLEWAEEADN 769
L GR L + A+ +N
Sbjct: 62 L-DGAEWMGRDLKVNKAKPREN 82
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/528 (20%), Positives = 200/528 (37%), Gaps = 129/528 (24%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
+ DN+ +G + N A+ + +S S + + S ++V L +VTE
Sbjct: 10 AADNTV--NGTPEATNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAM 67
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412
L +LF G +A + + D T ++ G+A V + +A + L+ T LI
Sbjct: 68 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYT--------LIK 119
Query: 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG 472
GKP C I + D + + + +KNL D KAL + F
Sbjct: 120 GKP------------CRIMWSQRDP---ALRKTGQGNVFIKNL---DAAIDNKALHDTFA 161
Query: 473 DLGRVLV-----PPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAK 527
G +L +G + F+ A+AA N++ + G+ K
Sbjct: 162 AFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN-------------GMLLNDK 208
Query: 528 EKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKN 587
+ G + +++D Q E++ N T +YIKN
Sbjct: 209 KVFVG------------------HHISKKDRQSKFEEMKANF-----------TNVYIKN 239
Query: 588 LNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVL 647
++ T++ R+ F+K G I S T++R ++ K S G+GFV F T +S A+ +
Sbjct: 240 IDQEVTDEEFRKMFEKFGEITSATLSRDQEGK------SRGFGFVNFSTHDSAQAAVDEM 293
Query: 648 QNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQAKQSEVE 703
+ + ++ + R+ + E E K+ + +K G + V+N+ ++
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 704 ELFKAFGELKFVRLPKKMVGS--------------------------------------- 724
ELF FG + ++ + V +
Sbjct: 354 ELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTE 413
Query: 725 ----GLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
G +GFGFV F + +EA +A+ + Q + G+ L + A+ D
Sbjct: 414 KKILGKSKGFGFVCFSSPDEASKAVTEMNQRM-VNGKPLYVALAQRKD 460
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ ++ F G I S VA+ + S GYGFV + T E+ N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNS------KGYGFVHYETAEAANN 195
Query: 643 ALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
A+K + L++ ++ + S ++ +S+ +K +NV ++NI +
Sbjct: 196 AIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNV--------YIKNIDQEVTDE 247
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
E ++F+ FGE+ L + G RGFGFV F T + A+ A+ + + G++L
Sbjct: 248 EFRKMFEKFGEITSATLSRDQ--EGKSRGFGFVNFSTHDSAQAAVDEM-NDKEIKGQKLY 304
Query: 761 LEWAEEA-DNVEDIRKR 776
+ A++ + E++RK+
Sbjct: 305 VGRAQKKHEREEELRKQ 321
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
++T E+ + FE+ G +T L EGK R F F+ + D AQAA+D N+ + +
Sbjct: 243 EVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQK 302
Query: 88 IKVEKC 93
+ V +
Sbjct: 303 LYVGRA 308
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 103/433 (23%), Positives = 163/433 (37%), Gaps = 106/433 (24%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRT-------TFLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P+ ++S+R T LG AY+ F D A+ K
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAES 336
N + KGK I +D S + GA
Sbjct: 96 LNFTPIKGKLCRIMWSQRDPSLRKKGA--------------------------------- 122
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL + L F +G + + D ET K+KGF V F E A++A
Sbjct: 123 GNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAID 181
Query: 397 HLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLP 456
L+G + G+ +++ P H ER+ F ++ + + +KN+
Sbjct: 182 ALNGMLLNGQEIYVGP--------------HLSKKERE-SKFEEMKANFTN--VYIKNIN 224
Query: 457 YRTLPTDLKALFEPFGDLGRVLV--PPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEV 511
T + + L FG V++ P G G V F+ A L T+FK
Sbjct: 225 TETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQ 284
Query: 512 PLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEE 571
PLY+ A K+ E+ +E ++ E + E A+ QG+
Sbjct: 285 PLYVNRAQ-------------KKYERQQELKKQYEATRMEKMAK---YQGI--------- 319
Query: 572 DEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGF 631
L+IKNL+ + + + F G I S V ++ K S G+GF
Sbjct: 320 ----------NLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGK------SKGFGF 363
Query: 632 VQFYTRESLNQAL 644
V F T E +A+
Sbjct: 364 VCFSTPEEATKAI 376
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/450 (21%), Positives = 166/450 (36%), Gaps = 102/450 (22%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S ++V +L +V+E L +F G ++ + + D T + G+A V F + A A
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 396 QHLDGTVFLGRMLHLI-----PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRII 450
+ L+ T G++ ++ P K+ GN I
Sbjct: 94 EKLNFTPIKGKLCRIMWSQRDPSLRKKGAGN----------------------------I 125
Query: 451 LVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT--------GLVEFLQKNQAKAAFNS 502
+KNL D KAL++ F G +L G V F + A A ++
Sbjct: 126 FIKNL---HPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDA 182
Query: 503 LAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGV 562
L G+ +E G K E E + EE K N
Sbjct: 183 L----------------NGMLLNGQEIYVGPHLSKKERESKF--EEMKANF--------- 215
Query: 563 PEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 622
T +YIKN+N +T+ K G SV + R + ++
Sbjct: 216 ------------------TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGEN-- 255
Query: 623 QFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSS 678
G+GFV F E + ++ L N+ + + R+ + E + K+ +
Sbjct: 256 ----KGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRME 311
Query: 679 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738
+AK G + ++N+ ++EE F +G + ++ +G +GFGFV F T
Sbjct: 312 KMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKV--MTTENGKSKGFGFVCFSTP 369
Query: 739 NEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
EA +A+ Q + G+ L + A+ D
Sbjct: 370 EEATKAITEKNQQI-VAGKPLYVAIAQRKD 398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,805,034
Number of Sequences: 539616
Number of extensions: 13803606
Number of successful extensions: 114230
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 1015
Number of HSP's that attempted gapping in prelim test: 75198
Number of HSP's gapped (non-prelim): 25206
length of query: 787
length of database: 191,569,459
effective HSP length: 126
effective length of query: 661
effective length of database: 123,577,843
effective search space: 81684954223
effective search space used: 81684954223
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)