Query psy3345
Match_columns 787
No_of_seqs 518 out of 4207
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0110|consensus 100.0 1.3E-72 2.8E-77 595.7 30.6 616 51-784 2-710 (725)
2 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-51 5.7E-56 469.9 43.3 353 338-770 2-367 (562)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.4E-47 1.8E-51 420.6 45.1 399 335-767 1-480 (481)
4 TIGR01628 PABP-1234 polyadenyl 100.0 4.6E-46 1E-50 426.6 37.4 347 226-667 2-366 (562)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6E-43 1.3E-47 389.7 41.3 391 224-664 2-479 (481)
6 KOG0127|consensus 100.0 2.4E-41 5.2E-46 346.1 29.7 419 337-768 6-531 (678)
7 KOG0123|consensus 100.0 1.4E-41 2.9E-46 357.6 28.5 341 338-769 3-351 (369)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-40 4E-45 359.6 34.0 268 336-768 3-350 (352)
9 KOG0127|consensus 100.0 5.7E-39 1.2E-43 328.8 26.7 303 13-416 6-378 (678)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.6E-38 1.9E-42 338.7 31.0 279 11-416 2-349 (352)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 5.5E-37 1.2E-41 336.6 31.4 286 335-713 57-369 (578)
12 KOG0110|consensus 100.0 3.3E-38 7.2E-43 334.8 19.5 426 11-521 226-693 (725)
13 KOG0123|consensus 100.0 1.1E-36 2.4E-41 320.5 26.5 338 226-667 3-351 (369)
14 KOG0145|consensus 100.0 2.1E-36 4.6E-41 282.0 23.7 263 444-766 38-357 (360)
15 KOG0117|consensus 100.0 8.8E-36 1.9E-40 299.2 26.2 254 334-774 81-338 (506)
16 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-34 2.6E-39 318.2 30.4 282 387-770 18-310 (578)
17 KOG0145|consensus 100.0 3.2E-34 7E-39 267.5 25.1 300 335-664 40-357 (360)
18 KOG0117|consensus 100.0 8.2E-33 1.8E-37 277.9 23.3 234 12-416 83-331 (506)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.5E-32 7.5E-37 309.7 31.4 294 443-767 171-502 (509)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.7E-32 1E-36 308.6 29.8 300 219-524 170-505 (509)
21 TIGR01622 SF-CC1 splicing fact 100.0 2.4E-31 5.3E-36 298.3 33.6 308 334-664 87-447 (457)
22 TIGR01622 SF-CC1 splicing fact 100.0 2E-31 4.4E-36 298.9 32.1 271 444-767 86-448 (457)
23 TIGR01645 half-pint poly-U bin 100.0 1.3E-30 2.9E-35 286.2 31.1 80 337-416 205-284 (612)
24 KOG0148|consensus 100.0 3.3E-31 7.2E-36 249.6 19.1 234 222-521 4-238 (321)
25 KOG0148|consensus 100.0 3.5E-31 7.5E-36 249.5 19.0 234 446-769 5-240 (321)
26 KOG4211|consensus 100.0 1.5E-30 3.2E-35 266.1 24.5 369 12-502 10-491 (510)
27 TIGR01645 half-pint poly-U bin 100.0 8.1E-30 1.7E-34 280.1 31.4 175 332-520 103-283 (612)
28 KOG0144|consensus 100.0 8E-31 1.7E-35 262.2 20.1 269 334-767 32-504 (510)
29 TIGR01659 sex-lethal sex-letha 100.0 1.2E-28 2.6E-33 258.7 22.0 173 576-769 103-277 (346)
30 KOG0144|consensus 100.0 5.5E-29 1.2E-33 249.1 17.0 159 223-416 33-206 (510)
31 KOG1190|consensus 100.0 1.1E-26 2.4E-31 231.0 24.8 410 334-765 26-489 (492)
32 KOG1190|consensus 100.0 2.4E-26 5.2E-31 228.6 25.2 409 222-664 26-490 (492)
33 KOG4211|consensus 99.9 1.2E-25 2.6E-30 230.3 19.9 418 221-748 7-492 (510)
34 TIGR01659 sex-lethal sex-letha 99.9 1.5E-25 3.3E-30 235.3 20.6 164 333-521 104-275 (346)
35 KOG4212|consensus 99.9 9.1E-25 2E-29 218.6 23.2 242 335-661 43-290 (608)
36 KOG0147|consensus 99.9 3.6E-26 7.9E-31 237.3 12.8 290 219-530 174-537 (549)
37 KOG0124|consensus 99.9 6.1E-24 1.3E-28 207.9 20.4 277 333-764 110-532 (544)
38 KOG1456|consensus 99.9 5.4E-22 1.2E-26 195.2 33.0 396 333-766 28-490 (494)
39 KOG0124|consensus 99.9 3.4E-24 7.3E-29 209.7 17.5 277 225-525 114-539 (544)
40 KOG0131|consensus 99.9 1.8E-24 3.9E-29 192.8 12.9 173 577-769 6-179 (203)
41 KOG0147|consensus 99.9 6.5E-24 1.4E-28 220.7 16.1 275 334-765 177-526 (549)
42 KOG4212|consensus 99.9 1.4E-22 3E-27 203.0 24.1 239 11-412 42-290 (608)
43 KOG4307|consensus 99.9 1.3E-22 2.7E-27 214.0 23.0 192 221-416 308-514 (944)
44 KOG1365|consensus 99.9 1.4E-23 3E-28 207.0 13.2 284 12-416 60-362 (508)
45 KOG0146|consensus 99.9 2.3E-21 5E-26 182.4 11.7 183 579-769 18-367 (371)
46 KOG0131|consensus 99.8 1.2E-20 2.7E-25 168.4 12.5 165 446-667 8-179 (203)
47 KOG1456|consensus 99.8 1.2E-17 2.6E-22 164.8 31.0 380 219-654 26-474 (494)
48 KOG0109|consensus 99.8 3E-20 6.5E-25 177.7 10.5 146 581-765 3-148 (346)
49 KOG0109|consensus 99.8 3.4E-19 7.4E-24 170.5 11.1 150 448-667 3-152 (346)
50 KOG0146|consensus 99.8 1.4E-18 3.1E-23 163.7 11.9 87 574-665 279-365 (371)
51 KOG4307|consensus 99.7 4.9E-17 1.1E-21 172.2 18.8 531 13-661 312-943 (944)
52 KOG1365|consensus 99.7 2E-18 4.4E-23 170.7 7.5 274 222-519 58-360 (508)
53 KOG0120|consensus 99.7 1.6E-17 3.4E-22 176.5 14.4 292 219-525 170-496 (500)
54 KOG4205|consensus 99.7 9.1E-18 2E-22 170.5 9.9 176 579-771 5-180 (311)
55 KOG0120|consensus 99.7 9.5E-17 2.1E-21 170.6 16.6 289 443-768 171-493 (500)
56 KOG0105|consensus 99.7 3.6E-16 7.7E-21 139.8 14.3 156 579-750 5-172 (241)
57 KOG0105|consensus 99.7 1.3E-15 2.9E-20 136.1 16.6 178 334-518 4-187 (241)
58 KOG4206|consensus 99.7 1.1E-15 2.4E-20 143.2 16.9 172 580-765 9-220 (221)
59 KOG4205|consensus 99.7 1.3E-16 2.8E-21 162.1 10.8 173 11-418 5-178 (311)
60 KOG4206|consensus 99.6 1.5E-14 3.2E-19 135.8 16.9 198 447-663 9-220 (221)
61 PLN03134 glycine-rich RNA-bind 99.6 3.6E-15 7.8E-20 136.9 12.4 82 9-95 31-113 (144)
62 PLN03134 glycine-rich RNA-bind 99.6 3.7E-15 7.9E-20 136.9 11.5 86 682-769 31-116 (144)
63 KOG1548|consensus 99.6 1.8E-13 3.9E-18 135.0 17.6 177 577-765 131-350 (382)
64 PF14259 RRM_6: RNA recognitio 99.5 9.4E-14 2E-18 111.8 9.2 70 15-89 1-70 (70)
65 KOG0106|consensus 99.5 4.3E-14 9.3E-19 134.5 8.1 166 581-769 2-173 (216)
66 PF00076 RRM_1: RNA recognitio 99.5 1.2E-13 2.6E-18 111.3 9.3 70 15-89 1-70 (70)
67 KOG4207|consensus 99.5 2.6E-14 5.6E-19 130.4 4.9 77 19-95 15-92 (256)
68 KOG0122|consensus 99.5 8.9E-14 1.9E-18 130.8 8.0 76 15-95 192-268 (270)
69 KOG1548|consensus 99.5 9.6E-13 2.1E-17 129.9 15.1 182 335-518 133-349 (382)
70 KOG1457|consensus 99.5 1E-12 2.3E-17 121.4 13.4 195 446-652 33-273 (284)
71 PF00076 RRM_1: RNA recognitio 99.4 4.5E-13 9.8E-18 107.9 9.7 70 339-409 1-70 (70)
72 KOG0121|consensus 99.4 2.8E-13 6E-18 114.1 7.3 84 331-414 31-114 (153)
73 KOG1457|consensus 99.4 2.1E-12 4.6E-17 119.4 12.6 176 334-509 32-274 (284)
74 KOG0106|consensus 99.4 5.2E-13 1.1E-17 127.1 8.6 166 337-518 2-168 (216)
75 KOG0125|consensus 99.4 6.3E-13 1.4E-17 130.1 8.6 77 13-95 97-173 (376)
76 KOG0122|consensus 99.4 9.5E-13 2.1E-17 123.9 9.3 82 335-416 188-269 (270)
77 PLN03120 nucleic acid binding 99.4 1.7E-12 3.7E-17 127.0 10.9 77 12-96 4-80 (260)
78 KOG0125|consensus 99.4 9.9E-13 2.1E-17 128.8 8.5 82 682-767 93-174 (376)
79 PF14259 RRM_6: RNA recognitio 99.4 3.1E-12 6.8E-17 102.9 9.5 70 339-409 1-70 (70)
80 KOG0114|consensus 99.4 5.4E-12 1.2E-16 102.2 9.9 92 682-778 15-106 (124)
81 PLN03120 nucleic acid binding 99.4 3.3E-12 7.1E-17 125.1 10.3 75 685-765 4-78 (260)
82 KOG4207|consensus 99.4 1.2E-12 2.5E-17 119.7 6.7 81 683-765 11-91 (256)
83 KOG0149|consensus 99.3 1.6E-12 3.4E-17 122.3 6.4 79 684-765 11-89 (247)
84 KOG0149|consensus 99.3 2.2E-12 4.7E-17 121.3 6.9 78 12-95 12-90 (247)
85 KOG0107|consensus 99.3 3.7E-12 7.9E-17 113.9 7.4 77 683-766 8-84 (195)
86 KOG0121|consensus 99.3 4.4E-12 9.4E-17 107.0 7.3 82 577-663 33-114 (153)
87 COG0724 RNA-binding proteins ( 99.3 2.4E-11 5.2E-16 127.8 14.1 164 580-749 115-288 (306)
88 smart00360 RRM RNA recognition 99.3 1.1E-11 2.4E-16 99.6 8.6 69 23-91 2-71 (71)
89 KOG0111|consensus 99.3 2.5E-12 5.3E-17 118.5 4.3 84 683-768 8-91 (298)
90 PLN03213 repressor of silencin 99.3 1.2E-11 2.6E-16 127.0 9.6 79 683-767 8-88 (759)
91 PLN03213 repressor of silencin 99.3 1.1E-11 2.3E-16 127.2 9.1 76 12-95 10-87 (759)
92 KOG0126|consensus 99.3 6.8E-13 1.5E-17 118.9 0.1 83 334-416 33-115 (219)
93 smart00362 RRM_2 RNA recogniti 99.3 2.4E-11 5.1E-16 98.0 8.8 71 15-91 2-72 (72)
94 KOG0114|consensus 99.2 3.3E-11 7.1E-16 97.7 8.8 81 577-665 15-95 (124)
95 KOG0130|consensus 99.2 1E-11 2.2E-16 105.6 6.0 83 334-416 70-152 (170)
96 KOG0130|consensus 99.2 1.7E-11 3.8E-16 104.2 7.1 89 9-102 69-158 (170)
97 PLN03121 nucleic acid binding 99.2 4.2E-11 9.2E-16 115.1 10.0 75 13-95 6-80 (243)
98 cd00590 RRM RRM (RNA recogniti 99.2 7E-11 1.5E-15 95.8 9.8 73 15-92 2-74 (74)
99 smart00361 RRM_1 RNA recogniti 99.2 3.9E-11 8.4E-16 96.0 7.5 60 31-90 2-69 (70)
100 COG0724 RNA-binding proteins ( 99.2 2.2E-10 4.8E-15 120.4 15.7 145 336-483 115-261 (306)
101 PLN03121 nucleic acid binding 99.2 7.5E-11 1.6E-15 113.5 10.5 78 335-416 4-81 (243)
102 KOG0107|consensus 99.2 4.6E-11 1E-15 106.9 8.4 80 578-667 8-87 (195)
103 KOG0113|consensus 99.2 6.5E-11 1.4E-15 114.8 9.5 82 334-415 99-180 (335)
104 smart00362 RRM_2 RNA recogniti 99.2 1.9E-10 4E-15 92.7 9.9 71 338-410 1-71 (72)
105 PF13893 RRM_5: RNA recognitio 99.2 1.1E-10 2.3E-15 89.0 7.7 56 34-93 1-56 (56)
106 KOG0126|consensus 99.2 6.8E-12 1.5E-16 112.5 0.7 80 11-95 34-114 (219)
107 KOG0108|consensus 99.1 1E-10 2.2E-15 124.7 9.4 87 686-774 19-105 (435)
108 PF13893 RRM_5: RNA recognitio 99.1 1.8E-10 3.9E-15 87.8 7.9 56 702-764 1-56 (56)
109 KOG0128|consensus 99.1 2.8E-13 6.1E-18 148.6 -11.0 328 335-766 478-814 (881)
110 smart00360 RRM RNA recognition 99.1 2.6E-10 5.7E-15 91.5 8.9 70 341-410 1-70 (71)
111 KOG0113|consensus 99.1 2E-10 4.4E-15 111.5 9.4 78 13-95 102-180 (335)
112 KOG0111|consensus 99.1 4.9E-11 1.1E-15 110.1 4.2 83 334-416 8-90 (298)
113 cd00590 RRM RRM (RNA recogniti 99.1 5.2E-10 1.1E-14 90.6 9.7 74 687-763 1-74 (74)
114 KOG4660|consensus 99.1 1.4E-09 3E-14 115.0 13.7 175 333-518 72-247 (549)
115 KOG0108|consensus 99.0 4.9E-10 1.1E-14 119.6 8.5 80 337-416 19-98 (435)
116 smart00361 RRM_1 RNA recogniti 99.0 2.3E-09 5E-14 85.7 8.6 61 350-410 2-69 (70)
117 KOG0112|consensus 99.0 8E-10 1.7E-14 122.3 6.5 164 575-768 367-532 (975)
118 KOG4660|consensus 99.0 3.6E-09 7.9E-14 111.9 11.1 71 444-514 72-143 (549)
119 KOG4661|consensus 98.9 2E-09 4.3E-14 112.5 6.8 80 16-95 404-484 (940)
120 KOG0128|consensus 98.9 2.9E-11 6.2E-16 133.1 -7.1 322 223-664 478-814 (881)
121 KOG0129|consensus 98.9 2.2E-08 4.8E-13 105.1 13.1 163 219-397 254-432 (520)
122 KOG0415|consensus 98.8 4.6E-09 9.9E-14 104.1 6.7 84 333-416 236-319 (479)
123 KOG4210|consensus 98.8 2.4E-09 5.2E-14 109.4 4.9 180 578-769 86-266 (285)
124 KOG0415|consensus 98.8 4.5E-09 9.7E-14 104.1 6.4 82 9-95 236-318 (479)
125 KOG0129|consensus 98.8 1.7E-07 3.6E-12 98.6 16.4 165 576-747 255-432 (520)
126 KOG4208|consensus 98.8 3.6E-08 7.9E-13 91.4 9.8 87 682-770 46-133 (214)
127 KOG0153|consensus 98.8 2.2E-08 4.8E-13 99.6 8.3 78 682-766 225-302 (377)
128 KOG4208|consensus 98.7 3.2E-08 6.9E-13 91.8 8.0 82 334-415 47-129 (214)
129 KOG0226|consensus 98.7 2.6E-08 5.6E-13 94.9 5.4 169 581-765 97-268 (290)
130 KOG0533|consensus 98.6 7.1E-08 1.5E-12 94.6 8.2 79 12-95 83-161 (243)
131 KOG0132|consensus 98.6 5.9E-08 1.3E-12 106.0 8.1 78 684-769 420-497 (894)
132 KOG0112|consensus 98.5 9.6E-08 2.1E-12 106.3 5.0 162 332-521 368-531 (975)
133 KOG0132|consensus 98.5 3E-07 6.5E-12 100.7 8.7 87 6-97 408-496 (894)
134 KOG4454|consensus 98.5 4E-08 8.8E-13 91.3 1.5 137 580-748 9-145 (267)
135 KOG4661|consensus 98.5 2.9E-07 6.4E-12 96.7 7.7 81 683-765 403-483 (940)
136 KOG4210|consensus 98.4 3.4E-07 7.3E-12 93.8 6.1 169 222-416 86-264 (285)
137 KOG0226|consensus 98.4 4.2E-07 9.1E-12 86.8 6.2 129 257-414 139-268 (290)
138 KOG0533|consensus 98.4 1E-06 2.2E-11 86.5 8.6 83 684-769 82-164 (243)
139 PF04059 RRM_2: RNA recognitio 98.4 3E-06 6.4E-11 71.0 9.9 79 686-766 2-86 (97)
140 PF04059 RRM_2: RNA recognitio 98.3 3.9E-06 8.3E-11 70.3 9.3 79 337-415 2-86 (97)
141 KOG0153|consensus 98.3 1.3E-06 2.7E-11 87.4 7.4 81 440-520 221-302 (377)
142 KOG4454|consensus 98.2 2.6E-07 5.7E-12 86.0 -0.0 141 221-410 6-157 (267)
143 KOG0116|consensus 98.2 2.8E-06 6E-11 90.6 7.6 79 11-95 287-366 (419)
144 KOG0151|consensus 98.2 2.1E-06 4.6E-11 93.1 6.7 85 681-766 170-256 (877)
145 KOG0116|consensus 98.2 2.5E-06 5.5E-11 90.9 6.5 80 684-766 287-366 (419)
146 KOG4209|consensus 98.1 4.3E-06 9.3E-11 82.7 5.7 82 333-415 98-179 (231)
147 KOG4209|consensus 98.0 7.6E-06 1.6E-10 81.0 5.9 80 10-95 99-179 (231)
148 KOG4676|consensus 98.0 5.2E-06 1.1E-10 84.1 4.7 176 224-404 7-214 (479)
149 PF11608 Limkain-b1: Limkain b 98.0 2.5E-05 5.4E-10 61.8 7.3 68 686-765 3-75 (90)
150 PF08777 RRM_3: RNA binding mo 97.9 3.1E-05 6.7E-10 66.7 7.4 86 685-777 1-90 (105)
151 KOG4676|consensus 97.9 1E-05 2.2E-10 81.9 5.0 193 447-653 7-214 (479)
152 KOG0151|consensus 97.9 1.8E-05 4E-10 86.1 6.7 86 576-663 170-255 (877)
153 KOG2193|consensus 97.8 2E-06 4.3E-11 87.7 -1.7 152 338-522 3-158 (584)
154 KOG2193|consensus 97.8 2.4E-06 5.2E-11 87.1 -1.2 153 581-766 2-156 (584)
155 PF11608 Limkain-b1: Limkain b 97.8 0.0001 2.2E-09 58.4 7.5 68 338-415 4-76 (90)
156 PF08777 RRM_3: RNA binding mo 97.6 0.00021 4.7E-09 61.5 7.1 69 448-516 2-75 (105)
157 KOG0115|consensus 97.5 0.00025 5.4E-09 68.5 6.6 103 639-764 6-111 (275)
158 KOG1995|consensus 97.4 0.00012 2.5E-09 74.5 3.5 90 683-774 64-161 (351)
159 KOG2314|consensus 97.3 0.00015 3.2E-09 77.3 3.6 77 12-94 58-142 (698)
160 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.0005 1.1E-08 51.0 5.1 51 14-75 3-53 (53)
161 COG5175 MOT2 Transcriptional r 97.2 0.00073 1.6E-08 67.4 7.0 86 5-95 107-202 (480)
162 KOG1995|consensus 97.2 0.00032 7E-09 71.3 4.5 84 333-416 63-154 (351)
163 COG5175 MOT2 Transcriptional r 97.1 0.00098 2.1E-08 66.5 6.8 81 336-416 114-203 (480)
164 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0022 4.7E-08 54.3 7.6 79 684-765 5-90 (100)
165 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0019 4.1E-08 54.7 7.0 77 12-95 6-91 (100)
166 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0013 2.8E-08 48.8 5.1 52 448-500 2-53 (53)
167 KOG0115|consensus 97.0 0.0016 3.5E-08 63.1 7.0 89 494-648 5-93 (275)
168 KOG2202|consensus 96.9 0.00043 9.4E-09 67.1 1.9 64 32-95 83-147 (260)
169 KOG3152|consensus 96.7 0.0013 2.7E-08 63.7 3.0 73 335-407 73-157 (278)
170 KOG2314|consensus 96.6 0.0085 1.8E-07 64.3 8.9 79 683-763 56-140 (698)
171 KOG1855|consensus 96.6 0.0057 1.2E-07 63.6 7.3 68 682-749 228-307 (484)
172 KOG2202|consensus 96.5 0.0015 3.3E-08 63.4 2.2 62 462-523 83-150 (260)
173 KOG3152|consensus 96.2 0.0032 6.9E-08 61.0 3.0 78 579-656 73-157 (278)
174 KOG1855|consensus 96.2 0.0059 1.3E-07 63.4 4.8 86 577-662 228-321 (484)
175 KOG4849|consensus 96.2 0.0052 1.1E-07 61.7 4.1 79 337-415 81-161 (498)
176 KOG1996|consensus 96.1 0.008 1.7E-07 59.2 5.2 79 445-523 279-369 (378)
177 KOG1996|consensus 96.1 0.013 2.9E-07 57.7 6.5 83 684-767 280-367 (378)
178 KOG2416|consensus 96.0 0.0072 1.6E-07 65.3 4.3 86 676-768 435-523 (718)
179 KOG4849|consensus 95.9 0.0051 1.1E-07 61.8 2.6 75 21-95 84-161 (498)
180 PF08952 DUF1866: Domain of un 95.3 0.081 1.7E-06 47.7 7.6 56 596-665 52-107 (146)
181 PF08675 RNA_bind: RNA binding 95.1 0.072 1.6E-06 42.7 6.1 53 223-276 8-60 (87)
182 PF08952 DUF1866: Domain of un 95.0 0.12 2.5E-06 46.7 7.8 56 352-416 52-107 (146)
183 PF10309 DUF2414: Protein of u 95.0 0.11 2.4E-06 39.5 6.5 54 685-748 5-62 (62)
184 PF15023 DUF4523: Protein of u 94.6 0.16 3.4E-06 45.0 7.3 74 682-765 83-160 (166)
185 KOG2416|consensus 94.5 0.032 6.8E-07 60.5 3.6 77 333-415 441-521 (718)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.066 1.4E-06 51.1 4.7 69 11-84 6-81 (176)
187 PF10309 DUF2414: Protein of u 94.1 0.14 3.1E-06 38.9 5.3 51 225-276 6-60 (62)
188 PF08675 RNA_bind: RNA binding 93.9 0.28 6.1E-06 39.4 6.9 62 6-79 2-63 (87)
189 PF15023 DUF4523: Protein of u 93.1 0.32 7E-06 43.1 6.6 74 444-519 83-160 (166)
190 PF07576 BRAP2: BRCA1-associat 93.1 0.82 1.8E-05 39.6 9.1 74 6-85 6-81 (110)
191 KOG0804|consensus 92.3 0.43 9.2E-06 50.6 7.4 77 3-85 64-142 (493)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.19 4.2E-06 47.9 4.6 68 336-403 7-80 (176)
193 KOG2135|consensus 92.2 0.098 2.1E-06 55.5 2.6 66 25-96 380-446 (526)
194 KOG4285|consensus 90.9 0.61 1.3E-05 46.7 6.5 69 447-517 197-266 (350)
195 KOG4285|consensus 90.8 0.41 9E-06 47.9 5.3 64 25-95 205-269 (350)
196 KOG2591|consensus 90.6 0.79 1.7E-05 49.8 7.5 70 446-516 174-247 (684)
197 KOG2068|consensus 90.5 0.14 3E-06 52.4 1.7 84 580-666 77-164 (327)
198 PF11767 SET_assoc: Histone ly 90.3 0.93 2E-05 35.1 5.8 55 28-90 11-65 (66)
199 PF04847 Calcipressin: Calcipr 90.3 0.59 1.3E-05 44.7 5.8 61 30-95 8-70 (184)
200 KOG2068|consensus 90.0 0.14 3.1E-06 52.2 1.4 78 338-416 79-163 (327)
201 KOG2591|consensus 89.4 0.72 1.6E-05 50.1 6.1 69 10-89 173-245 (684)
202 PF03880 DbpA: DbpA RNA bindin 89.0 1.6 3.5E-05 34.9 6.5 58 28-93 12-74 (74)
203 PF07292 NID: Nmi/IFP 35 domai 88.6 1.6 3.5E-05 36.0 6.2 68 261-356 1-72 (88)
204 PF04847 Calcipressin: Calcipr 88.5 1.2 2.6E-05 42.6 6.4 62 460-521 8-71 (184)
205 KOG2135|consensus 88.5 0.3 6.5E-06 51.9 2.5 73 337-416 373-446 (526)
206 PF10567 Nab6_mRNP_bdg: RNA-re 87.8 21 0.00046 36.2 14.5 188 577-765 12-230 (309)
207 PF07576 BRAP2: BRCA1-associat 86.2 6.8 0.00015 34.0 9.1 67 581-654 13-81 (110)
208 KOG0804|consensus 85.4 4.3 9.4E-05 43.3 8.8 68 580-654 74-142 (493)
209 PF07292 NID: Nmi/IFP 35 domai 84.1 1.7 3.6E-05 35.9 4.2 71 381-469 1-74 (88)
210 KOG4574|consensus 84.1 0.69 1.5E-05 52.8 2.6 74 687-768 300-375 (1007)
211 PF11767 SET_assoc: Histone ly 83.4 4.9 0.00011 31.2 6.2 56 696-762 11-66 (66)
212 PF14111 DUF4283: Domain of un 82.9 0.81 1.8E-05 42.6 2.3 106 236-370 29-139 (153)
213 KOG4574|consensus 82.5 0.94 2E-05 51.8 2.8 78 450-527 301-380 (1007)
214 PF03880 DbpA: DbpA RNA bindin 81.1 4.2 9.2E-05 32.5 5.5 59 695-764 11-74 (74)
215 KOG2253|consensus 81.0 1 2.3E-05 50.2 2.5 156 577-748 37-196 (668)
216 KOG2253|consensus 76.7 2.1 4.4E-05 48.0 3.1 75 678-763 33-107 (668)
217 PF10567 Nab6_mRNP_bdg: RNA-re 76.0 97 0.0021 31.7 15.4 188 446-663 14-230 (309)
218 PF14111 DUF4283: Domain of un 73.2 7.1 0.00015 36.2 5.5 122 591-734 28-151 (153)
219 KOG2318|consensus 72.8 16 0.00034 40.5 8.4 79 444-522 171-309 (650)
220 KOG2318|consensus 60.3 24 0.00052 39.2 6.8 78 11-93 173-303 (650)
221 PF07530 PRE_C2HC: Associated 58.7 18 0.00038 28.4 4.1 61 32-95 2-64 (68)
222 PF03468 XS: XS domain; Inter 57.9 15 0.00032 32.3 4.0 52 29-82 29-80 (116)
223 smart00596 PRE_C2HC PRE_C2HC d 57.4 21 0.00046 27.8 4.2 61 32-95 2-64 (69)
224 TIGR02542 B_forsyth_147 Bacter 56.8 33 0.00072 29.4 5.6 110 588-737 11-128 (145)
225 PF03468 XS: XS domain; Inter 53.0 17 0.00037 31.9 3.6 57 686-746 9-75 (116)
226 KOG4019|consensus 52.2 15 0.00032 34.5 3.1 75 447-521 10-90 (193)
227 KOG4019|consensus 49.1 23 0.0005 33.2 3.9 75 685-767 10-90 (193)
228 PRK14548 50S ribosomal protein 44.6 60 0.0013 26.7 5.3 51 25-77 28-80 (84)
229 KOG4365|consensus 44.0 5 0.00011 42.5 -1.3 79 11-95 2-81 (572)
230 PF15513 DUF4651: Domain of un 42.5 51 0.0011 25.1 4.1 18 32-49 9-26 (62)
231 KOG4410|consensus 41.1 24 0.00053 35.3 2.9 45 225-269 331-378 (396)
232 TIGR03636 L23_arch archaeal ri 40.1 82 0.0018 25.4 5.3 51 25-77 21-73 (77)
233 KOG4483|consensus 38.1 41 0.00089 35.5 4.1 56 222-277 389-446 (528)
234 PF07530 PRE_C2HC: Associated 37.8 65 0.0014 25.2 4.4 62 351-415 2-64 (68)
235 KOG4483|consensus 37.7 34 0.00073 36.1 3.5 53 20-77 394-446 (528)
236 KOG2891|consensus 36.4 55 0.0012 32.7 4.5 39 332-370 145-195 (445)
237 KOG1295|consensus 33.9 38 0.00082 35.9 3.2 66 12-82 7-76 (376)
238 PF15513 DUF4651: Domain of un 30.7 1.1E+02 0.0025 23.3 4.3 20 699-718 8-27 (62)
239 PF02714 DUF221: Domain of unk 30.0 51 0.0011 35.0 3.6 33 61-95 1-33 (325)
240 COG5638 Uncharacterized conser 27.1 76 0.0017 33.6 4.0 40 17-56 146-190 (622)
241 PF02714 DUF221: Domain of unk 26.6 1.1E+02 0.0025 32.3 5.6 57 630-708 1-57 (325)
242 smart00596 PRE_C2HC PRE_C2HC d 25.9 1.4E+02 0.003 23.5 4.2 61 351-414 2-63 (69)
243 KOG4365|consensus 25.1 15 0.00033 39.1 -1.4 78 685-765 3-80 (572)
244 PF14893 PNMA: PNMA 24.3 62 0.0013 34.2 2.9 45 223-267 17-71 (331)
245 KOG2891|consensus 23.3 64 0.0014 32.2 2.5 37 29-65 173-215 (445)
246 TIGR00387 glcD glycolate oxida 22.2 1.6E+02 0.0035 32.5 5.8 50 32-81 147-200 (413)
No 1
>KOG0110|consensus
Probab=100.00 E-value=1.3e-72 Score=595.71 Aligned_cols=616 Identities=44% Similarity=0.740 Sum_probs=440.6
Q ss_pred ecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCC
Q psy3345 51 YTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPE 130 (787)
Q Consensus 51 ~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (787)
++++|++|+||||+|.+.++|+.||++||++||++++|+|+.|++++++.+|++||++..+++..++....++....
T Consensus 2 ~t~dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~~~~gd~~kpr~wsk~a~~~~~~~k~~k~~~~~~~--- 78 (725)
T KOG0110|consen 2 RTKDGKFRRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFCKSFGDPNKPRPWSKYAKKSSEPKKKEKEEEEANI--- 78 (725)
T ss_pred cCCCCceeeeeEeeeccHHHHHHHHHHhhccccccceEEEEehhhcCCcccCcchhhhhhhhhhhhcccchhhhccc---
Confidence 57899999999999999999999999999999999999999999999999999999999998874444322211111
Q ss_pred CcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCCCc------------------cccccccccccccccCCCCcH
Q psy3345 131 HTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGEE------------------KEEENEDESNNQIAHADISDM 192 (787)
Q Consensus 131 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 192 (787)
.++..++++....||+|++||.+|.+ ++ .+|.|+..+. +.+.... ....+....|+
T Consensus 79 ~k~~~kk~k~~~~d~efqeFle~~~~--~~-~~w~n~~k~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~is-- 152 (725)
T KOG0110|consen 79 KKEKEKKKKALKDDPEFQEFLEVHRR--QS-TSWENDGKSKEASKLLREDEDSAGKGESLEEEASK-EPKAAVGKNIS-- 152 (725)
T ss_pred cccccccccccccCHHHHHHHHHhcc--cc-hhhccccchhhhhhhhhhhhhccccccccchhhcc-CcchhccccHH--
Confidence 11123334457889999999999999 66 8999874311 0000000 11122333444
Q ss_pred HHHhhc-cCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCCCCcceeecccceEEEeecChHhH
Q psy3345 193 EYLKLK-TKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNC 271 (787)
Q Consensus 193 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~~~g~afV~F~~~~~A 271 (787)
+|+.+. +...+....++. +++....+.|++..-..-|+. --|+.++.|.+.+..
T Consensus 153 ey~~s~~~k~~~~a~~~d~--------------------~a~~~~~~~d~r~~~~~~~~~-----~~~~~k~~~~e~~~v 207 (725)
T KOG0110|consen 153 EYLKSKMVKAESEAEEEDS--------------------SAELVTQERDVRYAGKEQGVE-----AGGVIKIDFSEEEEV 207 (725)
T ss_pred HHHHHHHhhhhhhcccccc--------------------cccccccccccccchhhcCcc-----ccceeeccCchHHhh
Confidence 777766 332221111100 011111111221111111111 013445555554443
Q ss_pred HHHHhcCCcccCCeeEEEeecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHH
Q psy3345 272 NKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTED 351 (787)
Q Consensus 272 ~~Al~~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~ 351 (787)
..+...+...+ ....++.++.+|||+||||.++++
T Consensus 208 ~~~~~~~~~~~---------------------------------------------~~~e~i~etgrlf~RNLpyt~~ee 242 (725)
T KOG0110|consen 208 KQASKANQESM---------------------------------------------GVEEDISETGRLFVRNLPYTSTEE 242 (725)
T ss_pred hhccccccccc---------------------------------------------chhhHHHhhhhhhhccCCccccHH
Confidence 33322111110 012456677899999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCC-CCCCC-------
Q psy3345 352 DLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN-EGNVD------- 423 (787)
Q Consensus 352 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-~~~~~------- 423 (787)
+|+.+| |||.|..++.|.+|...++|+.++||.|+|.+..++.. .....
T Consensus 243 d~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~~~~~~~~~~~k 299 (725)
T KOG0110|consen 243 DLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAKEDASELGSDYK 299 (725)
T ss_pred HHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhhhhHhhcCCcHH
Confidence 999999 89999999999999999999999999999998876521 10000
Q ss_pred ------------------------------------------------CC-ccccccc---------------cccchhh
Q psy3345 424 ------------------------------------------------GK-VHCCISE---------------RKLDAFN 439 (787)
Q Consensus 424 ------------------------------------------------~~-~~~a~~~---------------~~~~~~~ 439 (787)
++ +++++++ +.++.|+
T Consensus 300 ~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~ 379 (725)
T KOG0110|consen 300 KEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFS 379 (725)
T ss_pred HHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccch
Confidence 22 2444444 3355555
Q ss_pred hhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEec
Q psy3345 440 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519 (787)
Q Consensus 440 ~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 519 (787)
. ..+..+.|+|+|||..+..++|..+|..||.|.++.+|+.|..|+|+|.++.+|+.|+..|++..+...+++++|+|
T Consensus 380 ~--~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 380 Q--AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred h--hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 4 66778999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CccccccccccccccccccccccccchhhhhcccccccccCCCcc--cccccccccccCCCCCCeEEecCCCCCCCHHHH
Q psy3345 520 EGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE--VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSI 597 (787)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L 597 (787)
..+|...+.......++.... +..........+........ ........ .......+.|||+||++++|.++|
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~----ee~~~Er~s~~d~~v~eD~d~te~ss~a~~-a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKM----EENPSERVSAEDGQVEEDKDPTEESSLARV-AEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred hhhccCCcccccccccccccc----ccCcceecccccccccccCCccccccchhh-hhccccchhhhhhcCCcccchhHH
Confidence 999875522222111111110 00000000001100000000 00000000 111222234999999999999999
Q ss_pred HHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhcc
Q psy3345 598 RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS 677 (787)
Q Consensus 598 ~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~ 677 (787)
..+|...|.|.++.|.+.+++.+ .-.|+|||||+|.+.++|+.|++.|+|+.|+||.|.|+++..... .... .
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~--k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~---~~~g--K 605 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPAN--KYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA---STVG--K 605 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccc--cccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc---cccc--c
Confidence 99999999999999998887543 568999999999999999999999999999999999999982222 1111 2
Q ss_pred ccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 678 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 678 ~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
.......+++|+|+|||+.++-.+|+.+|..||.|.+|+||+.. +.+.+||||||.|.++++|.+|+.+|. ++||+||
T Consensus 606 ~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~-~k~a~rGF~Fv~f~t~~ea~nA~~al~-STHlyGR 683 (725)
T KOG0110|consen 606 KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKI-GKGAHRGFGFVDFLTPREAKNAFDALG-STHLYGR 683 (725)
T ss_pred ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhh-cchhhccceeeeccCcHHHHHHHHhhc-ccceech
Confidence 22233447899999999999999999999999999999999984 678899999999999999999999997 8999999
Q ss_pred eEEEEEccccccHHHHHHHHhhhccCC
Q psy3345 758 RLVLEWAEEADNVEDIRKRTNRYFGTA 784 (787)
Q Consensus 758 ~l~v~~A~~~~~~~~~~~~~~~~~~~~ 784 (787)
+|+++||..+..++++|+|++..|.+.
T Consensus 684 rLVLEwA~~d~~~e~~r~r~Aak~~~~ 710 (725)
T KOG0110|consen 684 RLVLEWAKSDNTMEALRERTAAKFHDQ 710 (725)
T ss_pred hhheehhccchHHHHHHHHHHHHhhcc
Confidence 999999999999999999999998764
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.6e-51 Score=469.90 Aligned_cols=353 Identities=25% Similarity=0.383 Sum_probs=303.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC
Q psy3345 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 417 (787)
+|||+|||+++|+++|+++|++||.|.+|+|+++..+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999976431
Q ss_pred CCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC-----CCcEEEEEeCC
Q psy3345 418 NEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQ 492 (787)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-----~~~~a~V~F~~ 492 (787)
. .......+|+|+|||.++++++|+++|+.||.|.+|.+.. ++++|||+|.+
T Consensus 82 ~-----------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~ 138 (562)
T TIGR01628 82 S-----------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEK 138 (562)
T ss_pred c-----------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECC
Confidence 1 1122356799999999999999999999999999888754 35799999999
Q ss_pred HHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccc
Q psy3345 493 KNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEED 572 (787)
Q Consensus 493 ~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (787)
.++|.+|+..++|..+.|+.|.|.+.....- +
T Consensus 139 ~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~---------~--------------------------------------- 170 (562)
T TIGR01628 139 EESAKAAIQKVNGMLLNDKEVYVGRFIKKHE---------R--------------------------------------- 170 (562)
T ss_pred HHHHHHHHHHhcccEecCceEEEeccccccc---------c---------------------------------------
Confidence 9999999999999999999999976533200 0
Q ss_pred cccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy3345 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSL 652 (787)
Q Consensus 573 ~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l 652 (787)
........++|||+|||+++|+++|+++|+.||.|.++.+..+.. +.++|||||+|.+.++|.+|+..|||..+
T Consensus 171 ~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~------g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 171 EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS------GRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC------CCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 000123357899999999999999999999999999999998754 67899999999999999999999999999
Q ss_pred C----CeEEEEEecCccccchhhhh----hhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCC
Q psy3345 653 D----EHQIELKRSNRNLESEATTV----KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS 724 (787)
Q Consensus 653 ~----g~~l~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~ 724 (787)
. |+.|.|.++........... ............++|||+|||..+|+++|+++|+.||.|++++|+.+ .+
T Consensus 245 ~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d--~~ 322 (562)
T TIGR01628 245 GLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD--EK 322 (562)
T ss_pred cccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC--CC
Confidence 9 99999998866544211110 01111122346788999999999999999999999999999999998 58
Q ss_pred CCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccccH
Q psy3345 725 GLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNV 770 (787)
Q Consensus 725 g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~ 770 (787)
|.++|||||+|.+.++|.+|+..|| +..+.|++|.|.||..++..
T Consensus 323 g~~~g~gfV~f~~~~~A~~A~~~~~-g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 323 GVSRGFGFVCFSNPEEANRAVTEMH-GRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCcCCeEEEEeCCHHHHHHHHHHhc-CCeeCCceeEEEeccCcHHH
Confidence 9999999999999999999999997 79999999999999977653
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=8.4e-47 Score=420.60 Aligned_cols=399 Identities=19% Similarity=0.235 Sum_probs=289.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHh--CCceeCCeEEEEee
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL--DGTVFLGRMLHLIP 412 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 412 (787)
++++|||+|||+++|+++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|++.+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 357899999999999999999999999999999875 3479999999999999999864 77899999999999
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC--cEEEEEe
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG--ITGLVEF 490 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~a~V~F 490 (787)
+..++.....+.. . ..........|+|.||++.+++++|+++|+.||.|.+|.+.++. ++|||+|
T Consensus 75 s~~~~~~~~~~~~------------~-~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef 141 (481)
T TIGR01649 75 STSQEIKRDGNSD------------F-DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEF 141 (481)
T ss_pred cCCcccccCCCCc------------c-cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEE
Confidence 8754211110000 0 00011234579999999999999999999999999999887644 4899999
Q ss_pred CCHHHHHHHHHHhcCCeeCC--eeEEEEEecCccccccccccccccccccccccccchhhhhc---ccccc---------
Q psy3345 491 LQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKE---NTAEE--------- 556 (787)
Q Consensus 491 ~~~~~A~~A~~~l~~~~~~g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------- 556 (787)
.+.++|.+|+..|||..+.| ++|.|+|+..............+........ .+.+..... .....
T Consensus 142 ~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (481)
T TIGR01649 142 ESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP-GRRDPGLDQTHRQRQPALLGQHPSSY 220 (481)
T ss_pred CCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC-CCCCCCcCccccccccccccCCCccC
Confidence 99999999999999999974 5899999876543322222221111100000 000000000 00000
Q ss_pred ------------------cccC---CCcc--------ccc--ccccccccCCCCCCeEEecCCCC-CCCHHHHHHHHhhc
Q psy3345 557 ------------------DNQQ---GVPE--------VEE--NVEEDEEREPEPDTTLYIKNLNF-NSTEDSIRRHFKKC 604 (787)
Q Consensus 557 ------------------~~~~---~~~~--------~~~--~~~~~~~~~~~~~~~l~V~NLp~-~~t~~~L~~~F~~~ 604 (787)
.... ..+. ... ....-......++++|||+|||+ .+|+++|+++|+.|
T Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y 300 (481)
T TIGR01649 221 GHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY 300 (481)
T ss_pred CCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 0000 0000 000 00000011134678999999998 69999999999999
Q ss_pred CCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhh------------
Q psy3345 605 GPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATT------------ 672 (787)
Q Consensus 605 G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~------------ 672 (787)
|.|.+|+++++. +|||||+|.+.++|..|+..|||..|.|+.|.|.++..........
T Consensus 301 G~V~~vki~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d 370 (481)
T TIGR01649 301 GNVERVKFMKNK----------KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKD 370 (481)
T ss_pred CCeEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCccccc
Confidence 999999998743 4899999999999999999999999999999999986532100000
Q ss_pred -----hhhcccc------ccCCCCCEEEEecCCccCcHHHHHHHHHhcCC--eeEEEeccccCCCCCCceEEEEEecCHH
Q psy3345 673 -----VKRKSSN------VAKQTGSKILVRNIPFQAKQSEVEELFKAFGE--LKFVRLPKKMVGSGLHRGFGFVEFITKN 739 (787)
Q Consensus 673 -----~~~~~~~------~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~--I~~v~i~~~~~~~g~~~g~afV~F~~~~ 739 (787)
..+.... ....++.+|||+|||..+|+++|+++|+.||. |..+++.... + ..+|+|||+|.+.+
T Consensus 371 ~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~--~-~~~~~gfVeF~~~e 447 (481)
T TIGR01649 371 YSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD--N-ERSKMGLLEWESVE 447 (481)
T ss_pred ccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC--C-CcceeEEEEcCCHH
Confidence 0000000 01236789999999999999999999999998 8888886552 3 35899999999999
Q ss_pred HHHHHHHHhcCCeeecCce------EEEEEcccc
Q psy3345 740 EAKRAMKALCQSTHLYGRR------LVLEWAEEA 767 (787)
Q Consensus 740 ~A~~Al~~l~~~~~~~Gr~------l~v~~A~~~ 767 (787)
+|.+||..|| +..+.|+. |+|+||++.
T Consensus 448 ~A~~Al~~ln-~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 448 DAVEALIALN-HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHhc-CCccCCCCCCccceEEEEeccCC
Confidence 9999999997 69999985 999999763
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.6e-46 Score=426.57 Aligned_cols=347 Identities=26% Similarity=0.396 Sum_probs=285.8
Q ss_pred eEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-------ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccCC
Q psy3345 226 TIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-------FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKDN 296 (787)
Q Consensus 226 ~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-------~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~~ 296 (787)
+|||+|||+++|+++|+++|+.+|.+ +|+++ ++|+|||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~------ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM------ 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee------
Confidence 69999999999999999999999987 78887 45899999999999999998 78888999999994
Q ss_pred ccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCC
Q psy3345 297 SAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376 (787)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~ 376 (787)
|.... .........+|||+|||.++++++|+++|+.||.|.+|.++.+. +|+
T Consensus 76 -----------------------~s~~~----~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~ 127 (562)
T TIGR01628 76 -----------------------WSQRD----PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGK 127 (562)
T ss_pred -----------------------ccccc----ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCC
Confidence 21000 00111234579999999999999999999999999999998874 688
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCC
Q psy3345 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLP 456 (787)
Q Consensus 377 ~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp 456 (787)
++|||||+|.+.++|.+|++.+||..+.|+.|.|.....+.... .......++|+|+|||
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~--------------------~~~~~~~~~l~V~nl~ 187 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE--------------------AAPLKKFTNLYVKNLD 187 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc--------------------cccccCCCeEEEeCCC
Confidence 99999999999999999999999999999999997765431110 0122345789999999
Q ss_pred CCCCHHHHHHhhccCCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCeeC----CeeEEEEEecCccccccc
Q psy3345 457 YRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFK----EVPLYLEWAPEGVFAEAK 527 (787)
Q Consensus 457 ~~~t~~~l~~~F~~~G~v~~v~i~~-----~~~~a~V~F~~~~~A~~A~~~l~~~~~~----g~~l~v~~~~~~~~~~~~ 527 (787)
.++++++|+++|+.||.|.++.+.. .+++|||+|.+.++|.+|++.|+|..+. |+.+.|.++....-....
T Consensus 188 ~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~ 267 (562)
T TIGR01628 188 PSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAE 267 (562)
T ss_pred CcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHH
Confidence 9999999999999999999988865 3469999999999999999999999999 999999887544100000
Q ss_pred cccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCe
Q psy3345 528 EKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPI 607 (787)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v 607 (787)
. . ..... ...........++|||+|||+++++++|+++|+.||.|
T Consensus 268 ~--------------~--------~~~~~-------------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i 312 (562)
T TIGR01628 268 L--------------R--------RKFEE-------------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEI 312 (562)
T ss_pred H--------------H--------hhHHh-------------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCe
Confidence 0 0 00000 00011123456789999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCcccc
Q psy3345 608 ASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLE 667 (787)
Q Consensus 608 ~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~ 667 (787)
.+++++.+. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.++..
T Consensus 313 ~~~~i~~d~------~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 313 TSAKVMLDE------KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred EEEEEEECC------CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999999975 378999999999999999999999999999999999999987644
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6e-43 Score=389.71 Aligned_cols=391 Identities=19% Similarity=0.234 Sum_probs=277.7
Q ss_pred cceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-ccceEEEeecChHhHHHHHh---cCCcccCCeeEEEeecccCCcc
Q psy3345 224 YHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-FLGMAYIGFKDEKNCNKALN---KNKSFWKGKQLNIYKYSKDNSA 298 (787)
Q Consensus 224 ~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-~~g~afV~F~~~~~A~~Al~---~~~~~l~g~~i~v~~~~~~~~~ 298 (787)
+++|+|+|||+++++++|+++|+.||.| .+.++ .+|+|||+|.+.++|..|+. .++..++|+.|.|.........
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 5799999999999999999999999998 67777 78999999999999999998 3678899999999521111000
Q ss_pred ccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcc
Q psy3345 299 KYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378 (787)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 378 (787)
... . ............+|+|+||++.+|+++|+++|+.||.|.+|.++++. .+
T Consensus 82 -~~~------------------~----~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~ 134 (481)
T TIGR01649 82 -RDG------------------N----SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NV 134 (481)
T ss_pred -cCC------------------C----CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----Cc
Confidence 000 0 00000011223479999999999999999999999999999987653 24
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEeeCCCCCC-----CCCC---CCC-c--------------ccc----
Q psy3345 379 GFALVTFLMPEHATQAYQHLDGTVFLG--RMLHLIPGKPKEN-----EGNV---DGK-V--------------HCC---- 429 (787)
Q Consensus 379 g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~~-----~~~~---~~~-~--------------~~a---- 429 (787)
|+|||+|.+.++|.+|++.|||..|.| ..|+|.++..... .... ..+ . +..
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~ 214 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLG 214 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCcccccccccccc
Confidence 699999999999999999999999965 5888888765310 0000 000 0 000
Q ss_pred --------------------------cccc----ccc-----------hhh--hhhhcCCCCEEEEeCCCC-CCCHHHHH
Q psy3345 430 --------------------------ISER----KLD-----------AFN--QVVEARSKRIILVKNLPY-RTLPTDLK 465 (787)
Q Consensus 430 --------------------------~~~~----~~~-----------~~~--~~~~~~~~~~i~v~nlp~-~~t~~~l~ 465 (787)
++.. ... ... ......+.++|+|+|||+ .+++++|+
T Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~ 294 (481)
T TIGR01649 215 QHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLF 294 (481)
T ss_pred CCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 0000 000 000 001123568999999998 69999999
Q ss_pred HhhccCCCeeEEEecCC-CcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCcccccccccccccccccccccccc
Q psy3345 466 ALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEE 544 (787)
Q Consensus 466 ~~F~~~G~v~~v~i~~~-~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (787)
++|+.||.|.+|.+..+ +++|||+|.+.++|..|+..|+|..+.|++|.|.++........... ....
T Consensus 295 ~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~-----------~~~~ 363 (481)
T TIGR01649 295 NLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG-----------QLDD 363 (481)
T ss_pred HHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC-----------cCcC
Confidence 99999999999998775 58999999999999999999999999999999999855422111000 0000
Q ss_pred chhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCC--eEEEEEeecCCCCCCC
Q psy3345 545 GEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP--IASVTVARKKDPKSPG 622 (787)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~~ 622 (787)
+.. ...+......................+..+|||+|||+++++++|+++|+.||. |..+++.....
T Consensus 364 ~~~-----~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~----- 433 (481)
T TIGR01649 364 GLT-----SYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN----- 433 (481)
T ss_pred CCc-----ccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC-----
Confidence 000 000000000000000000000112346789999999999999999999999998 88888764332
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE------EEEEecCc
Q psy3345 623 QFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ------IELKRSNR 664 (787)
Q Consensus 623 ~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~------l~v~~~~~ 664 (787)
..+|+|||+|.+.++|.+|+..|||..|+|+. |+|.++..
T Consensus 434 --~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 434 --ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred --CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 35799999999999999999999999999985 99988764
No 6
>KOG0127|consensus
Probab=100.00 E-value=2.4e-41 Score=346.15 Aligned_cols=419 Identities=23% Similarity=0.434 Sum_probs=295.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
.+|||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|+-.+|+++|+..+++..+.|+.|.|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999877
Q ss_pred CCCCCCC----CCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC-----cEEE
Q psy3345 417 ENEGNVD----GKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-----ITGL 487 (787)
Q Consensus 417 ~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-----~~a~ 487 (787)
..+.... .+......+... .......+...|+|+|||+.+...+|..+|+.||.|..|.||..+ ||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~---~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRP---TKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred ccchhcccccchhhhcccccCCc---chhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 4333111 111111111000 011122347899999999999999999999999999999999732 6999
Q ss_pred EEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc-ccccccccc------ccccccccc----c------ccccchhhhh
Q psy3345 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG-VFAEAKEKS------KGKEKEKNE----E------EGEEGEEEKK 550 (787)
Q Consensus 488 V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~-~~~~~~~~~------~~~~~~~~~----~------~~~~~~~~~~ 550 (787)
|+|....+|..|++.+|+..|.||+|.|.||-.. .|....... ....+...+ . +..+.+....
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ede 242 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDE 242 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccc
Confidence 9999999999999999999999999999999554 343322110 000000000 0 0000000000
Q ss_pred cccc------------ccc---ccCC---C--cccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEE
Q psy3345 551 ENTA------------EED---NQQG---V--PEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610 (787)
Q Consensus 551 ~~~~------------~~~---~~~~---~--~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v 610 (787)
+.+. ++. .++. . ++....+..........+.+|||+||||++|+++|.++|++||.|..+
T Consensus 243 Ee~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya 322 (678)
T KOG0127|consen 243 EETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYA 322 (678)
T ss_pred ccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeE
Confidence 0000 000 0000 0 000000000112334456899999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-CccCCeEEEEEecCccccchhh-------------
Q psy3345 611 TVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVL-----QN-SSLDEHQIELKRSNRNLESEAT------------- 671 (787)
Q Consensus 611 ~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~l-----ng-~~l~g~~l~v~~~~~~~~~~~~------------- 671 (787)
.|+.+++ ++.|+|.|||.|.+..+|+.||.+. .| ..|+||.|.|.++-........
T Consensus 323 ~iV~~k~-----T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkr 397 (678)
T KOG0127|consen 323 IIVKDKD-----TGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKR 397 (678)
T ss_pred EEEeccC-----CCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCcc
Confidence 9999887 8999999999999999999999976 24 6789999999887532211000
Q ss_pred ----------------------------------hhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHh----c-CCe
Q psy3345 672 ----------------------------------TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKA----F-GEL 712 (787)
Q Consensus 672 ----------------------------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~----~-G~I 712 (787)
..+....+.-....++|.|+|||..++...|..+... | +.+
T Consensus 398 NLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~ 477 (678)
T KOG0127|consen 398 NLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKV 477 (678)
T ss_pred ceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhc
Confidence 0000111112236788999999999999998888753 2 223
Q ss_pred e-EEEecccc--CCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 713 K-FVRLPKKM--VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 713 ~-~v~i~~~~--~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
. .+|.++.. -..+.+.||+||.|..++.|..|+..+ + .. ++-+|+|+....
T Consensus 478 kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~-G-~l---kq~~Vefev~~~ 531 (678)
T KOG0127|consen 478 KKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL-G-VL---KQAKVEFEVDGV 531 (678)
T ss_pred chhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc-c-cc---ccceEEEEeccc
Confidence 2 24544442 124778999999999999999999876 1 21 466777776554
No 7
>KOG0123|consensus
Probab=100.00 E-value=1.4e-41 Score=357.61 Aligned_cols=341 Identities=26% Similarity=0.392 Sum_probs=296.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC
Q psy3345 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 417 (787)
.|||+ +++|+..|.++|+++|+++++++++|. | +.|||||.|.++.+|.+|+.++|...+.|++|+|+|+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd- 75 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD- 75 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-
Confidence 58999 899999999999999999999999997 5 9999999999999999999999999999999999998743
Q ss_pred CCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC----CCcEEEEEeCCH
Q psy3345 418 NEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQK 493 (787)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~----~~~~a~V~F~~~ 493 (787)
...|+|+||+.+++..+|.++|+.||.|.+|++.. .+++ ||+|.++
T Consensus 76 -----------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e 125 (369)
T KOG0123|consen 76 -----------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESE 125 (369)
T ss_pred -----------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCH
Confidence 12299999999999999999999999999999865 4467 9999999
Q ss_pred HHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCccccccccccc
Q psy3345 494 NQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDE 573 (787)
Q Consensus 494 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (787)
++|.+|+..+||..+.|+.|+|...........+. .
T Consensus 126 ~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~--------------------------------------------~ 161 (369)
T KOG0123|consen 126 ESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPL--------------------------------------------G 161 (369)
T ss_pred HHHHHHHHHhcCcccCCCeeEEeeccchhhhcccc--------------------------------------------c
Confidence 99999999999999999999999875541111000 0
Q ss_pred ccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy3345 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD 653 (787)
Q Consensus 574 ~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~ 653 (787)
+ ....-+.++++|++.+++++.|..+|..+|.|.++.++.+.. +.++|||||.|.++++|..|+..||+...+
T Consensus 162 ~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~------g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 162 E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI------GKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC------CCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 1 223457899999999999999999999999999999998775 568999999999999999999999999999
Q ss_pred CeEEEEEecCccccchhhhh----hhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCce
Q psy3345 654 EHQIELKRSNRNLESEATTV----KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 729 (787)
Q Consensus 654 g~~l~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g 729 (787)
+..+.|..+.++........ .............+|||+||+..++.+.|+++|+.||.|.+++|+.+ ..|+++|
T Consensus 235 ~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~--~~g~skG 312 (369)
T KOG0123|consen 235 DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD--ENGKSKG 312 (369)
T ss_pred ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec--cCCCccc
Confidence 99999998877444221111 12222333567889999999999999999999999999999999998 6999999
Q ss_pred EEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 730 FGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 730 ~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
||||+|.+.++|.+|+..+| +..+.|+.|.|.++.....
T Consensus 313 ~gfV~fs~~eeA~~A~~~~n-~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 313 FGFVEFSSPEEAKKAMTEMN-GRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred eEEEEcCCHHHHHHHHHhhC-hhhhcCCchhhhHHhhhcc
Confidence 99999999999999999997 6999999999999984443
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.8e-40 Score=359.60 Aligned_cols=268 Identities=23% Similarity=0.401 Sum_probs=227.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
..+|||+|||+++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 56899999999999999999999999999999999998999999999999999999999999999999999999987542
Q ss_pred CCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHH
Q psy3345 416 KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ 495 (787)
Q Consensus 416 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~ 495 (787)
..
T Consensus 83 ~~------------------------------------------------------------------------------ 84 (352)
T TIGR01661 83 SS------------------------------------------------------------------------------ 84 (352)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCccccccccccccc
Q psy3345 496 AKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEER 575 (787)
Q Consensus 496 A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (787)
T Consensus 85 -------------------------------------------------------------------------------- 84 (352)
T TIGR01661 85 -------------------------------------------------------------------------------- 84 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-
Q psy3345 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDE- 654 (787)
Q Consensus 576 ~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g- 654 (787)
.....++|||+|||+.+++++|+.+|++||.|..++++.+.. ++.++|||||+|.+.++|..|+..|||..+.|
T Consensus 85 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 85 DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV-----TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC-----CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 000124699999999999999999999999999999998764 45789999999999999999999999999987
Q ss_pred -eEEEEEecCccccchhh------------hhhh----------------------------------------------
Q psy3345 655 -HQIELKRSNRNLESEAT------------TVKR---------------------------------------------- 675 (787)
Q Consensus 655 -~~l~v~~~~~~~~~~~~------------~~~~---------------------------------------------- 675 (787)
++|.|.++......... ....
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 57888887533210000 0000
Q ss_pred --------------------ccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEe
Q psy3345 676 --------------------KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735 (787)
Q Consensus 676 --------------------~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F 735 (787)
.........+.+|||+|||+.+++++|+++|++||.|.+++|+++. .+|.++|||||+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~-~t~~skG~aFV~F 318 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL-TTNQCKGYGFVSM 318 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC-CCCCccceEEEEE
Confidence 0000002234579999999999999999999999999999999985 6899999999999
Q ss_pred cCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 736 ITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 736 ~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
.+.++|.+||..|| |..|+||+|+|+|+..+.
T Consensus 319 ~~~~~A~~Ai~~ln-G~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 319 TNYDEAAMAILSLN-GYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHHhC-CCEECCeEEEEEEccCCC
Confidence 99999999999997 799999999999998654
No 9
>KOG0127|consensus
Probab=100.00 E-value=5.7e-39 Score=328.78 Aligned_cols=303 Identities=23% Similarity=0.347 Sum_probs=220.7
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
.-++|++ ||+++|.++|.++||.+|+|..+.++.++ .+.+||||||+|+-.||+++|++..+++.|.||.|.|.
T Consensus 6 ~TlfV~~-----lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 6 ATLFVSR-----LPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred ceEEEec-----CCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 5689999 99999999999999999999999999987 57899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCCCc
Q psy3345 92 KCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGEE 171 (787)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (787)
+|++ +.-++....... +. +..+..+.
T Consensus 81 ~A~~-------R~r~e~~~~~e~------------~~------------------------veK~~~q~----------- 106 (678)
T KOG0127|consen 81 PAKK-------RARSEEVEKGEN------------KA------------------------VEKPIEQK----------- 106 (678)
T ss_pred cccc-------cccchhcccccc------------hh------------------------hhcccccC-----------
Confidence 9987 211110000000 00 00000000
Q ss_pred cccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCCCCc
Q psy3345 172 KEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA 251 (787)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v 251 (787)
.+... -.....-.|+|+|||+.|.+.||...|+.||.+
T Consensus 107 ----------------------------------------~~~k~--~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V 144 (678)
T KOG0127|consen 107 ----------------------------------------RPTKA--KVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKV 144 (678)
T ss_pred ----------------------------------------Ccchh--hccCccceEEeecCCcccCcHHHHHHHhhcceE
Confidence 00000 001124579999999999999999999999988
Q ss_pred -ceeec------ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccCCccccCC-----------------C--c
Q psy3345 252 -SVRTT------FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSG-----------------A--A 304 (787)
Q Consensus 252 -~i~i~------~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~~~~~~~~-----------------~--~ 304 (787)
.|.|+ -.|+|||.|....+|..|+. +|+..+.||+|-|....+++...... . .
T Consensus 145 ~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~ 224 (678)
T KOG0127|consen 145 VEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADE 224 (678)
T ss_pred EEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhccccc
Confidence 88888 12899999999999999999 89999999999986433333322110 0 0
Q ss_pred CCCC-------ch-hhhhhh-hccc------------ccccchhh---------------hhcccCCCCeEEEcCCCCCC
Q psy3345 305 DDNN-------NA-SMENIK-AKHW------------KSQEDSVQ---------------FAEDIAESGRIFVRNLSYTV 348 (787)
Q Consensus 305 ~~~~-------~~-~~~~~~-~~~~------------~~~~~~~~---------------~~~~~~~~~~l~V~nLp~~~ 348 (787)
+... .. +..... .... ........ .........+|||+||||++
T Consensus 225 d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~ 304 (678)
T KOG0127|consen 225 DDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDT 304 (678)
T ss_pred ccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccc
Confidence 0000 00 000000 0000 00000000 01122344899999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHh-----CC-ceeCCeEEEEeeCCCC
Q psy3345 349 TEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL-----DG-TVFLGRMLHLIPGKPK 416 (787)
Q Consensus 349 te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l-----~~-~~~~g~~l~v~~~~~~ 416 (787)
|+++|.++|++||+|..+.++.++.||.++|.|||.|.+..+|+.||+.. .| ..+.||.|.|.++..+
T Consensus 305 tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 305 TEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred cHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99999999999999999999999999999999999999999999999865 23 6789999999998865
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.6e-38 Score=338.72 Aligned_cols=279 Identities=22% Similarity=0.320 Sum_probs=215.0
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
++++|+|.| ||+.+||+||+++|+.||+|.+|+|++++ +|+++|||||.|.+.+||.+||..||+..|.|+.|.
T Consensus 2 ~~~~l~V~n-----Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 2 SKTNLIVNY-----LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CCcEEEEeC-----CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 467899999 99999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCC
Q psy3345 90 VEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDG 169 (787)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (787)
|.++++..
T Consensus 77 v~~a~~~~------------------------------------------------------------------------ 84 (352)
T TIGR01661 77 VSYARPSS------------------------------------------------------------------------ 84 (352)
T ss_pred EEeecccc------------------------------------------------------------------------
Confidence 99987500
Q ss_pred CccccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCCC
Q psy3345 170 EEKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLP 249 (787)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~g 249 (787)
.......|+|+|||.++++++|+++|..+|
T Consensus 85 --------------------------------------------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 85 --------------------------------------------------DSIKGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred --------------------------------------------------cccccceEEECCccccCCHHHHHHHHhccC
Confidence 000124699999999999999999999999
Q ss_pred Cc-ceeec-------ccceEEEeecChHhHHHHHh-cCCcccCC--eeEEEeecccCCccc----cC-------CCcCC-
Q psy3345 250 LA-SVRTT-------FLGMAYIGFKDEKNCNKALN-KNKSFWKG--KQLNIYKYSKDNSAK----YS-------GAADD- 306 (787)
Q Consensus 250 ~v-~i~i~-------~~g~afV~F~~~~~A~~Al~-~~~~~l~g--~~i~v~~~~~~~~~~----~~-------~~~~~- 306 (787)
.+ .++++ ++|+|||+|.+.++|+.|+. +++..+.| .+|.|.......... .. .....
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRV 194 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCC
Confidence 87 56665 46899999999999999998 88888877 456664211111000 00 00000
Q ss_pred ------------CCch----------h-hhhh--h------hcccccc---c---ch--------hhhhcccCCCCeEEE
Q psy3345 307 ------------NNNA----------S-MENI--K------AKHWKSQ---E---DS--------VQFAEDIAESGRIFV 341 (787)
Q Consensus 307 ------------~~~~----------~-~~~~--~------~~~~~~~---~---~~--------~~~~~~~~~~~~l~V 341 (787)
.... . .... . ...+... . .. .........+.+|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 274 (352)
T TIGR01661 195 PLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFV 274 (352)
T ss_pred CccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEE
Confidence 0000 0 0000 0 0000000 0 00 000001123457999
Q ss_pred cCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 342 RNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 342 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
+|||+++++++|+++|++||.|.+++|+++..+|.++|||||+|.+.++|.+|+..|||..|.||.|+|.+...+
T Consensus 275 ~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 275 YNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999999999999889999999999999999999999999999999999999998765
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.5e-37 Score=336.59 Aligned_cols=286 Identities=22% Similarity=0.325 Sum_probs=234.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEeeC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL-GRMLHLIPG 413 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~-g~~l~v~~~ 413 (787)
..++|||+|||+++++++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++|++.||+..+. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4579999999999999999999999999999999999 78999999999999999999999999998885 777777654
Q ss_pred CCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCC-eeEEEec-------CCCcE
Q psy3345 414 KPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD-LGRVLVP-------PYGIT 485 (787)
Q Consensus 414 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~-v~~v~i~-------~~~~~ 485 (787)
. ..++|+|.|||..+++++|.++|+.++. +..+.+. .++++
T Consensus 136 ~-------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGF 184 (578)
T TIGR01648 136 V-------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGF 184 (578)
T ss_pred c-------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCce
Confidence 3 2478999999999999999999999864 4444432 24579
Q ss_pred EEEEeCCHHHHHHHHHHhcC--CeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCc
Q psy3345 486 GLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVP 563 (787)
Q Consensus 486 a~V~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (787)
|||+|.++++|..|+..|+. ..+.|+.|.|+|+.+..-.
T Consensus 185 AFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~--------------------------------------- 225 (578)
T TIGR01648 185 AFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEV--------------------------------------- 225 (578)
T ss_pred EEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccc---------------------------------------
Confidence 99999999999999998864 3577999999999544100
Q ss_pred ccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhc--CCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHH
Q psy3345 564 EVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKC--GPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641 (787)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~ 641 (787)
........++|||+|||.++++++|+++|++| |.|.+|++++ +||||+|.+.++|.
T Consensus 226 ---------d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------------gfAFVeF~s~e~A~ 283 (578)
T TIGR01648 226 ---------DEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------------DYAFVHFEDREDAV 283 (578)
T ss_pred ---------cccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------------CeEEEEeCCHHHHH
Confidence 00112234789999999999999999999999 9999987653 69999999999999
Q ss_pred HHHHHhCCCccCCeEEEEEecCccccchhh--------------hhhhccccccCCCCCEEEEecCCccCcHHHHHHHHH
Q psy3345 642 QALKVLQNSSLDEHQIELKRSNRNLESEAT--------------TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFK 707 (787)
Q Consensus 642 ~A~~~lng~~l~g~~l~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~ 707 (787)
+|+..|||..|+|+.|.|.++.+....... ...+............+++.|+++.++++-+.++|.
T Consensus 284 kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 284 KAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 999999999999999999999764331000 000111122234678999999999999999999999
Q ss_pred hcCCee
Q psy3345 708 AFGELK 713 (787)
Q Consensus 708 ~~G~I~ 713 (787)
.+|.|.
T Consensus 364 ~~g~~~ 369 (578)
T TIGR01648 364 MPGPIR 369 (578)
T ss_pred cCcccc
Confidence 999764
No 12
>KOG0110|consensus
Probab=100.00 E-value=3.3e-38 Score=334.79 Aligned_cols=426 Identities=24% Similarity=0.330 Sum_probs=291.8
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
...+|+||| |||++||+||+.+| |||+|..++.|.+|...+|++.++||.++|
T Consensus 226 etgrlf~RN-----Lpyt~~eed~~~lf----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhv 278 (725)
T KOG0110|consen 226 ETGRLFVRN-----LPYTSTEEDLLKLF----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHV 278 (725)
T ss_pred hhhhhhhcc-----CCccccHHHHHHhh----------------------HHHhhhhhHHHHhhhhhccccccccceeee
Confidence 467899999 99999999999999 999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchH------HHHHHhCCCcccCccC
Q psy3345 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFS------DFLQLHGKDVSKLLPL 164 (787)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 164 (787)
.+..+..... . ..+.....++...+- +++.....-..||+.++ ..|+...+..++ +.+
T Consensus 279 lp~~~k~~~~--~---~~~~~~~~~k~~ke~----------~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~-~i~ 342 (725)
T KOG0110|consen 279 LPSKEKSTAK--E---DASELGSDYKKEKEL----------KRKAASASFHSWNTLFMGANAVAGILAQKLGVEKS-RIL 342 (725)
T ss_pred cCcchhhhhh--h---hHhhcCCcHHHHHHh----------ccccchhcceecccccccccHHHHHHHHHhCCeee-eee
Confidence 9888622111 0 011111112222111 11112344567877776 455555554444 333
Q ss_pred CCCCCCc-----cccccccccccccccCCCCcHHHHhhc-cC--CCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCC
Q psy3345 165 SNKDGEE-----KEEENEDESNNQIAHADISDMEYLKLK-TK--SKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGV 236 (787)
Q Consensus 165 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~ 236 (787)
+-..... +.++.+..+.+ .++... |. +++ ...++.+.|+++|||..+
T Consensus 343 d~~~~gsavr~al~etr~~~e~~----------~~~ee~gV~l~~F~---------------~~~rs~~vil~kNlpa~t 397 (725)
T KOG0110|consen 343 DGSLSGSAVRLALGETRVVQEVR----------RFFEENGVKLDAFS---------------QAERSDTVILVKNLPAGT 397 (725)
T ss_pred chhhcchHHHHHHHHhhhchhhh----------hhHHhhCcccccch---------------hhhhhcceeeeccCcccc
Confidence 3211100 11111111111 222222 21 111 146788999999999999
Q ss_pred CHHhHHHhhcCCCCc-ceeecccc-eEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccCCccccCCCcCCCCchhhh
Q psy3345 237 KKKDLKAYFKPLPLA-SVRTTFLG-MAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASME 313 (787)
Q Consensus 237 te~di~~~F~~~g~v-~i~i~~~g-~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 313 (787)
..++|...|..||.+ .+.+++.| .|+|+|.++.+|++|+. +....+...++.+. |+|.+..............+..
T Consensus 398 ~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle-~aP~dvf~~~pka~~~~~e~~~ 476 (725)
T KOG0110|consen 398 LSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE-WAPEDVFTEDPKADDLSAESRS 476 (725)
T ss_pred ccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccc-cChhhhccCCcccccccccccc
Confidence 999999999999988 46555666 69999999999999999 66666666666552 3555544422111111110011
Q ss_pred h----hhhccccc------ccc-----hhh-hhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCC--
Q psy3345 314 N----IKAKHWKS------QED-----SVQ-FAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD-- 375 (787)
Q Consensus 314 ~----~~~~~~~~------~~~-----~~~-~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-- 375 (787)
. ........ ... ... ........++|||+||++++|.++|..+|...|.|.++.|...++..
T Consensus 477 ~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k 556 (725)
T KOG0110|consen 477 KMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANK 556 (725)
T ss_pred ccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccccccc
Confidence 1 00000000 000 000 00111223349999999999999999999999999999887654321
Q ss_pred -CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeC
Q psy3345 376 -KTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKN 454 (787)
Q Consensus 376 -~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~n 454 (787)
.+.|||||+|.++++|+.|++.|+|+.+.|+.|.|.++..+..... + .........+.|+|+|
T Consensus 557 ~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~--g--------------K~~~~kk~~tKIlVRN 620 (725)
T KOG0110|consen 557 YLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV--G--------------KKKSKKKKGTKILVRN 620 (725)
T ss_pred ccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc--c--------------cccccccccceeeeec
Confidence 2679999999999999999999999999999999999872211100 0 0111223367999999
Q ss_pred CCCCCCHHHHHHhhccCCCeeEEEecCC------CcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc
Q psy3345 455 LPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 455 lp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 521 (787)
||+.++..+++.+|..||.|.+|.||.. .|+|||.|.++.+|.+|+.+|.+++++||.|.++|+...
T Consensus 621 ipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred cchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 9999999999999999999999999974 468999999999999999999999999999999999766
No 13
>KOG0123|consensus
Probab=100.00 E-value=1.1e-36 Score=320.48 Aligned_cols=338 Identities=25% Similarity=0.390 Sum_probs=281.9
Q ss_pred eEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec----ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccCCccc
Q psy3345 226 TIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT----FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKDNSAK 299 (787)
Q Consensus 226 ~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~----~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~~~~~ 299 (787)
.|||+ +++|+..|.++|++.|.+ +++++ +.|+|||.|.++++|.+|+. +|...+.|++|.|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri---------- 69 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI---------- 69 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe----------
Confidence 57888 899999999999999988 88888 55899999999999999999 8999999999999
Q ss_pred cCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcce
Q psy3345 300 YSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKG 379 (787)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 379 (787)
.|+... ...|||.||+.+++..+|.++|+.||.|++|++..+.. | ++|
T Consensus 70 -------------------m~s~rd-----------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg 117 (369)
T KOG0123|consen 70 -------------------MWSQRD-----------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKG 117 (369)
T ss_pred -------------------ehhccC-----------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-cee
Confidence 443211 11299999999999999999999999999999999854 5 999
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCC
Q psy3345 380 FALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRT 459 (787)
Q Consensus 380 ~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~ 459 (787)
| ||+|.+++.|.+|++.+||..+.|+.|.|.....++..... ... .....+.++++|++.+.
T Consensus 118 ~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~----------------~~~-~~~~~t~v~vk~~~~~~ 179 (369)
T KOG0123|consen 118 Y-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAP----------------LGE-YKKRFTNVYVKNLEEDS 179 (369)
T ss_pred e-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccc----------------ccc-hhhhhhhhheecccccc
Confidence 9 99999999999999999999999999999988876221100 011 23446789999999999
Q ss_pred CHHHHHHhhccCCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCcccccccccccccc
Q psy3345 460 LPTDLKALFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKE 534 (787)
Q Consensus 460 t~~~l~~~F~~~G~v~~v~i~~-----~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 534 (787)
+.+.|..+|+.+|.|.++.+.+ +++++||+|.++++|..|+..|++..+.+..++|..+....-...
T Consensus 180 ~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~-------- 251 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREA-------- 251 (369)
T ss_pred chHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHH--------
Confidence 9999999999999999998876 357999999999999999999999999999999987754210000
Q ss_pred ccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEee
Q psy3345 535 KEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVAR 614 (787)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~ 614 (787)
... . ................+|||+|++..++.+.|+.+|+.||.|.+++|..
T Consensus 252 ------~l~------------~---------~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~ 304 (369)
T KOG0123|consen 252 ------ELK------------R---------KFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMV 304 (369)
T ss_pred ------HHh------------h---------hhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEe
Confidence 000 0 0000001122345678999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCcccc
Q psy3345 615 KKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLE 667 (787)
Q Consensus 615 ~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~ 667 (787)
+.. +.++|||||+|.+.++|.+|+..+||..++|+.|.|.+..+...
T Consensus 305 ~~~------g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 305 DEN------GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred ccC------CCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhcc
Confidence 875 78999999999999999999999999999999999988774433
No 14
>KOG0145|consensus
Probab=100.00 E-value=2.1e-36 Score=282.01 Aligned_cols=263 Identities=23% Similarity=0.347 Sum_probs=228.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC------cEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEE
Q psy3345 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 517 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 517 (787)
..+.+.|+|.-||..+|.++++.+|...|+|++|++.+++ |++||.|.++++|++|+..|||-++..++|.|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4567899999999999999999999999999999998755 6899999999999999999999999999999999
Q ss_pred ecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHH
Q psy3345 518 APEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSI 597 (787)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L 597 (787)
+.+. .......+|||.+||.++|..+|
T Consensus 118 ARPS-----------------------------------------------------s~~Ik~aNLYvSGlPktMtqkel 144 (360)
T KOG0145|consen 118 ARPS-----------------------------------------------------SDSIKDANLYVSGLPKTMTQKEL 144 (360)
T ss_pred ccCC-----------------------------------------------------hhhhcccceEEecCCccchHHHH
Confidence 9554 12334678999999999999999
Q ss_pred HHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eEEEEEecCccccchhh----
Q psy3345 598 RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDE--HQIELKRSNRNLESEAT---- 671 (787)
Q Consensus 598 ~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g--~~l~v~~~~~~~~~~~~---- 671 (787)
..+|++||.|...+|+.|.- ++.++|.|||.|....+|.+|++.|||..-.| .+|.|+|+.........
T Consensus 145 E~iFs~fGrIItSRiL~dqv-----tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls 219 (360)
T KOG0145|consen 145 EQIFSPFGRIITSRILVDQV-----TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLS 219 (360)
T ss_pred HHHHHHhhhhhhhhhhhhcc-----cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhH
Confidence 99999999999999998765 78999999999999999999999999998877 58999998754321000
Q ss_pred ----------------hhh---------------hc--------------cccccCCCCCEEEEecCCccCcHHHHHHHH
Q psy3345 672 ----------------TVK---------------RK--------------SSNVAKQTGSKILVRNIPFQAKQSEVEELF 706 (787)
Q Consensus 672 ----------------~~~---------------~~--------------~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F 706 (787)
..+ +. ..+.....+++|||.||.+++++.-|.++|
T Consensus 220 ~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlF 299 (360)
T KOG0145|consen 220 QLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLF 299 (360)
T ss_pred HhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHh
Confidence 000 00 001112357999999999999999999999
Q ss_pred HhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccc
Q psy3345 707 KAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766 (787)
Q Consensus 707 ~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~ 766 (787)
++||.|..|+|++|+ .+.+++|||||.+.+.++|..||..|| |..+.+|.|.|+|...
T Consensus 300 gpFGAv~nVKvirD~-ttnkCKGfgFVtMtNYdEAamAi~sLN-Gy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 300 GPFGAVTNVKVIRDF-TTNKCKGFGFVTMTNYDEAAMAIASLN-GYRLGDRVLQVSFKTN 357 (360)
T ss_pred CcccceeeEEEEecC-CcccccceeEEEecchHHHHHHHHHhc-CccccceEEEEEEecC
Confidence 999999999999998 679999999999999999999999997 7999999999999753
No 15
>KOG0117|consensus
Probab=100.00 E-value=8.8e-36 Score=299.24 Aligned_cols=254 Identities=25% Similarity=0.411 Sum_probs=219.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee-CCeEEEEee
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVF-LGRMLHLIP 412 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~-~g~~l~v~~ 412 (787)
..++-|||+.||.++.|++|..+|++.|+|.++++++|+.+|.++|||||.|.+.++|+.|++.||+..| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5678899999999999999999999999999999999999999999999999999999999999998766 345544432
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCC
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ 492 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~ 492 (787)
+.
T Consensus 161 Sv------------------------------------------------------------------------------ 162 (506)
T KOG0117|consen 161 SV------------------------------------------------------------------------------ 162 (506)
T ss_pred ee------------------------------------------------------------------------------
Confidence 11
Q ss_pred HHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccc
Q psy3345 493 KNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEED 572 (787)
Q Consensus 493 ~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (787)
T Consensus 163 -------------------------------------------------------------------------------- 162 (506)
T KOG0117|consen 163 -------------------------------------------------------------------------------- 162 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--
Q psy3345 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP-IASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQN-- 649 (787)
Q Consensus 573 ~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng-- 649 (787)
..++|||+|||.++++++|++.|++.++ |.+|.+...++ .+.+++|||||+|.++..|..|.+.|-.
T Consensus 163 ------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~----dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 163 ------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPD----DKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred ------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcc----ccccccceEEEEeecchhHHHHHhhccCCc
Confidence 1478999999999999999999999875 78888776654 4678999999999999999999988743
Q ss_pred CccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCce
Q psy3345 650 SSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 729 (787)
Q Consensus 650 ~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g 729 (787)
..+.|+.+.|.|+.+......... ..-..|||+||+.++|++.|+++|+.||.|..|+.++|
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~m---------s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------- 294 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTM---------SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------- 294 (506)
T ss_pred eeecCCcceeeccCcccCCChhhh---------hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---------
Confidence 567999999999987766322211 12457999999999999999999999999999988877
Q ss_pred EEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccccHHHHH
Q psy3345 730 FGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIR 774 (787)
Q Consensus 730 ~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~~~~~ 774 (787)
||||.|.+.++|.+||+.+| ++.|.|..|.|.+|+|.+.....|
T Consensus 295 YaFVHf~eR~davkAm~~~n-gkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 295 YAFVHFAEREDAVKAMKETN-GKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred eeEEeecchHHHHHHHHHhc-CceecCceEEEEecCChhhhccch
Confidence 89999999999999999997 799999999999999888654443
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-34 Score=318.18 Aligned_cols=282 Identities=20% Similarity=0.252 Sum_probs=225.7
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHH
Q psy3345 387 MPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKA 466 (787)
Q Consensus 387 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~ 466 (787)
..+.|.+||..++|..+........+..+.... ........+.|||.|||.++++++|.+
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~--------------------~~~~p~~~~~lFVgnLp~~~tEd~L~~ 77 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGW--------------------SGVQPGRGCEVFVGKIPRDLYEDELVP 77 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcc--------------------cCCCCCCCCEEEeCCCCCCCCHHHHHH
Confidence 368899999888988776655555554332100 011223468999999999999999999
Q ss_pred hhccCCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCeeC-CeeEEEEEecCcccccccccccccccccccc
Q psy3345 467 LFEPFGDLGRVLVPP-----YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAPEGVFAEAKEKSKGKEKEKNEE 540 (787)
Q Consensus 467 ~F~~~G~v~~v~i~~-----~~~~a~V~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (787)
+|++||.|..+.|.. ++++|||+|.+.++|.+|++.|++..+. |+.|.|.++.
T Consensus 78 ~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~--------------------- 136 (578)
T TIGR01648 78 LFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV--------------------- 136 (578)
T ss_pred HHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc---------------------
Confidence 999999999888753 5579999999999999999999998886 6766665431
Q ss_pred ccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCC
Q psy3345 541 EGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP-IASVTVARKKDPK 619 (787)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~ 619 (787)
..++|||+|||+++++++|.+.|++++. +..+.+....
T Consensus 137 --------------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~--- 175 (578)
T TIGR01648 137 --------------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSA--- 175 (578)
T ss_pred --------------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccc---
Confidence 2478999999999999999999999864 5554443222
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccC
Q psy3345 620 SPGQFLSMGYGFVQFYTRESLNQALKVLQN--SSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697 (787)
Q Consensus 620 ~~~~~~s~G~afV~F~~~e~A~~A~~~lng--~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~ 697 (787)
..++.++|||||+|.++++|..|+..|+. ..+.|+.|.|.|+.+..... .......++|||+|||..+
T Consensus 176 -~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---------~~~~~~~k~LfVgNL~~~~ 245 (578)
T TIGR01648 176 -ADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---------EDVMAKVKILYVRNLMTTT 245 (578)
T ss_pred -cccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc---------ccccccccEEEEeCCCCCC
Confidence 12457899999999999999999998864 35789999999987654311 1112345789999999999
Q ss_pred cHHHHHHHHHhc--CCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccccH
Q psy3345 698 KQSEVEELFKAF--GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNV 770 (787)
Q Consensus 698 t~~dL~~~F~~~--G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~ 770 (787)
|+++|+++|+.| |.|..|++++ +||||+|.+.++|.+||..|| +..|.|+.|.|+||+|.+..
T Consensus 246 tee~L~~~F~~f~~G~I~rV~~~r---------gfAFVeF~s~e~A~kAi~~ln-G~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 246 TEEIIEKSFSEFKPGKVERVKKIR---------DYAFVHFEDREDAVKAMDELN-GKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred CHHHHHHHHHhcCCCceEEEEeec---------CeEEEEeCCHHHHHHHHHHhC-CCEECCEEEEEEEccCCCcc
Confidence 999999999999 9999997743 589999999999999999997 79999999999999987654
No 17
>KOG0145|consensus
Probab=100.00 E-value=3.2e-34 Score=267.45 Aligned_cols=300 Identities=19% Similarity=0.316 Sum_probs=226.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
..+.|.|.-||..+|+++|+.+|+..|+|++|++++|+-+|.+.||+||.|-+++||.+|+..|||..++.++|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCee--EEEecC----CCcEEEE
Q psy3345 415 PKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPP----YGITGLV 488 (787)
Q Consensus 415 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~----~~~~a~V 488 (787)
+.. .......|||.+||..+|..||.++|++||.|. +|.++. ++|.+||
T Consensus 120 PSs-------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFi 174 (360)
T KOG0145|consen 120 PSS-------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFI 174 (360)
T ss_pred CCh-------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEE
Confidence 651 223457899999999999999999999999985 344433 5678999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCC--eeEEEEEecCcccccccc-ccccccccc---cccccccchhhhhcccccccc--cC
Q psy3345 489 EFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEGVFAEAKE-KSKGKEKEK---NEEEGEEGEEEKKENTAEEDN--QQ 560 (787)
Q Consensus 489 ~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~ 560 (787)
.|....+|..|+..|||..-.| .+|.|.|+....-..... -...-+.+. ..+.....+.-+-+....... ..
T Consensus 175 RFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~r 254 (360)
T KOG0145|consen 175 RFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQAR 254 (360)
T ss_pred EecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhcc
Confidence 9999999999999999988776 478998874331000000 000000000 000000000000000000000 00
Q ss_pred CCccccccc----ccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCC
Q psy3345 561 GVPEVEENV----EEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYT 636 (787)
Q Consensus 561 ~~~~~~~~~----~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~ 636 (787)
.++-..... .-..+.....+.+|||.||.+++++.-|+++|.+||.|.+|++++|.. +...+|||||.+.+
T Consensus 255 fsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~t-----tnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 255 FSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFT-----TNKCKGFGFVTMTN 329 (360)
T ss_pred CCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCC-----cccccceeEEEecc
Confidence 000000000 001133455578999999999999999999999999999999999987 67899999999999
Q ss_pred HHHHHHHHHHhCCCccCCeEEEEEecCc
Q psy3345 637 RESLNQALKVLQNSSLDEHQIELKRSNR 664 (787)
Q Consensus 637 ~e~A~~A~~~lng~~l~g~~l~v~~~~~ 664 (787)
-++|..|+..|||..++++.|.|.|...
T Consensus 330 YdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 330 YDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred hHHHHHHHHHhcCccccceEEEEEEecC
Confidence 9999999999999999999999998654
No 18
>KOG0117|consensus
Probab=100.00 E-value=8.2e-33 Score=277.95 Aligned_cols=234 Identities=23% Similarity=0.379 Sum_probs=199.0
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccC-CceEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVF-SSRIK 89 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~-~~~i~ 89 (787)
..-|+|-+ ||.++.|+||..||.+.|.|.+++|++++ +|.+||||||+|.+.++|++||+.||+..|. |+.|.
T Consensus 83 G~EVfvGk-----IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 83 GCEVFVGK-----IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CceEEecC-----CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 45699999 99999999999999999999999999997 8999999999999999999999999999774 56666
Q ss_pred EEEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCC
Q psy3345 90 VEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDG 169 (787)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (787)
|..+.
T Consensus 158 vc~Sv--------------------------------------------------------------------------- 162 (506)
T KOG0117|consen 158 VCVSV--------------------------------------------------------------------------- 162 (506)
T ss_pred EEEee---------------------------------------------------------------------------
Confidence 64432
Q ss_pred CccccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCC-
Q psy3345 170 EEKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL- 248 (787)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~- 248 (787)
.+++|||+|||.+.++++|.+-|+..
T Consensus 163 -----------------------------------------------------an~RLFiG~IPK~k~keeIlee~~kVt 189 (506)
T KOG0117|consen 163 -----------------------------------------------------ANCRLFIGNIPKTKKKEEILEEMKKVT 189 (506)
T ss_pred -----------------------------------------------------ecceeEeccCCccccHHHHHHHHHhhC
Confidence 36789999999999999999999999
Q ss_pred -CCcceeec--------ccceEEEeecChHhHHHHHhc--C-CcccCCeeEEEeecccCCccccCCCcCCCCchhhhhhh
Q psy3345 249 -PLASVRTT--------FLGMAYIGFKDEKNCNKALNK--N-KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK 316 (787)
Q Consensus 249 -g~v~i~i~--------~~g~afV~F~~~~~A~~Al~~--~-~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (787)
|+++|.+. ++|+|||+|.+...|..|-.+ . +..+-|..+.|
T Consensus 190 eGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV--------------------------- 242 (506)
T KOG0117|consen 190 EGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV--------------------------- 242 (506)
T ss_pred CCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee---------------------------
Confidence 56676666 679999999999999888872 2 45567777777
Q ss_pred hcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHH
Q psy3345 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396 (787)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~ 396 (787)
.|.....+.+.+ .......|||+||+.++|++.|+++|+.||.|..|..++| ||||.|.+.++|.+|++
T Consensus 243 --dWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 243 --DWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred --eccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 332211111111 2333457999999999999999999999999999988765 99999999999999999
Q ss_pred HhCCceeCCeEEEEeeCCCC
Q psy3345 397 HLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 397 ~l~~~~~~g~~l~v~~~~~~ 416 (787)
.+||..|.|..|.|.++++.
T Consensus 312 ~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred HhcCceecCceEEEEecCCh
Confidence 99999999999999999987
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.5e-32 Score=309.68 Aligned_cols=294 Identities=16% Similarity=0.249 Sum_probs=218.5
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHhhccC------------CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC
Q psy3345 443 EARSKRIILVKNLPYRTLPTDLKALFEPF------------GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE 510 (787)
Q Consensus 443 ~~~~~~~i~v~nlp~~~t~~~l~~~F~~~------------G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g 510 (787)
......+|||+|||+.+|+++|.++|..+ +.|..+.+..++++|||+|.+.++|..|+ .|+|..|.|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34556899999999999999999999874 45677888889999999999999999999 599999999
Q ss_pred eeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCC
Q psy3345 511 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNF 590 (787)
Q Consensus 511 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~ 590 (787)
++|.|.+.... ........... ...+ ...... ..............++|||+|||+
T Consensus 250 ~~l~v~r~~~~--~~~~~~~~~~~-----~~~~-------~~~~~~----------~~~~~~~~~~~~~~~~l~v~nlp~ 305 (509)
T TIGR01642 250 VFLKIRRPHDY--IPVPQITPEVS-----QKNP-------DDNAKN----------VEKLVNSTTVLDSKDRIYIGNLPL 305 (509)
T ss_pred ceeEecCcccc--CCccccCCCCC-----CCCC-------cccccc----------cccccccccCCCCCCEEEEeCCCC
Confidence 99998754221 10000000000 0000 000000 000000011234568999999999
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchh
Q psy3345 591 NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEA 670 (787)
Q Consensus 591 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~ 670 (787)
.+++++|.++|+.||.|..+.++++.. ++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++........
T Consensus 306 ~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~ 380 (509)
T TIGR01642 306 YLGEDQIKELLESFGDLKAFNLIKDIA-----TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQAT 380 (509)
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCC-----CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCC
Confidence 999999999999999999999998765 678999999999999999999999999999999999999864322110
Q ss_pred hh--------------hhhccccccCCCCCEEEEecCCccC----------cHHHHHHHHHhcCCeeEEEecccc--CCC
Q psy3345 671 TT--------------VKRKSSNVAKQTGSKILVRNIPFQA----------KQSEVEELFKAFGELKFVRLPKKM--VGS 724 (787)
Q Consensus 671 ~~--------------~~~~~~~~~~~~~~~l~V~nLp~~~----------t~~dL~~~F~~~G~I~~v~i~~~~--~~~ 724 (787)
.. ...........+..+|+|.||.... ..++|+++|++||.|.+|.|++.. ..+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~ 460 (509)
T TIGR01642 381 IDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNS 460 (509)
T ss_pred ccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCc
Confidence 00 0000001123467889999996431 236899999999999999998762 123
Q ss_pred CCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccc
Q psy3345 725 GLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767 (787)
Q Consensus 725 g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~ 767 (787)
+...|+|||+|.+.++|.+|+..|| |+.|.|+.|.|.|..++
T Consensus 461 ~~~~G~~fV~F~~~e~A~~A~~~ln-Gr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 461 TPGVGKVFLEYADVRSAEKAMEGMN-GRKFNDRVVVAAFYGED 502 (509)
T ss_pred CCCcceEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEEeCHH
Confidence 5567999999999999999999997 79999999999998754
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.7e-32 Score=308.60 Aligned_cols=300 Identities=18% Similarity=0.277 Sum_probs=214.3
Q ss_pred cCCCccceEEEeCCCCCCCHHhHHHhhcCC------------CCc-ceeec-ccceEEEeecChHhHHHHHhcCCcccCC
Q psy3345 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPL------------PLA-SVRTT-FLGMAYIGFKDEKNCNKALNKNKSFWKG 284 (787)
Q Consensus 219 ~~~~~~~~v~v~nLp~~~te~di~~~F~~~------------g~v-~i~i~-~~g~afV~F~~~~~A~~Al~~~~~~l~g 284 (787)
...+..++|||+|||+++|+++|.+||..+ +.+ .+.+. .+|+|||+|.+.++|..||.+++..+.|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g 249 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSN 249 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeC
Confidence 345677899999999999999999999874 122 23333 6799999999999999999999999999
Q ss_pred eeEEEeecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee
Q psy3345 285 KQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA 364 (787)
Q Consensus 285 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 364 (787)
+.|.|.. +......+....... .......+................++|||+|||+.+|+++|+++|+.||.|.
T Consensus 250 ~~l~v~r--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 250 VFLKIRR--PHDYIPVPQITPEVS----QKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred ceeEecC--ccccCCccccCCCCC----CCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 9999852 111110000000000 0000000000000001111234567999999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCC---ccccccccccchhhhh
Q psy3345 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGK---VHCCISERKLDAFNQV 441 (787)
Q Consensus 365 ~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~ 441 (787)
.+.++.+..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++............ .........+......
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQ 403 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhcc
Confidence 9999999889999999999999999999999999999999999999998654211110000 0000000000000001
Q ss_pred hhcCCCCEEEEeCCCCCC----------CHHHHHHhhccCCCeeEEEecCC---------CcEEEEEeCCHHHHHHHHHH
Q psy3345 442 VEARSKRIILVKNLPYRT----------LPTDLKALFEPFGDLGRVLVPPY---------GITGLVEFLQKNQAKAAFNS 502 (787)
Q Consensus 442 ~~~~~~~~i~v~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~---------~~~a~V~F~~~~~A~~A~~~ 502 (787)
....+..+|+|.|+...- ..++|+++|++||.|..|.|+.. .|+|||+|.+.++|.+|+..
T Consensus 404 ~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 404 IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 123457889999996431 23689999999999999999752 36899999999999999999
Q ss_pred hcCCeeCCeeEEEEEecCcccc
Q psy3345 503 LAYTKFKEVPLYLEWAPEGVFA 524 (787)
Q Consensus 503 l~~~~~~g~~l~v~~~~~~~~~ 524 (787)
|||+.|.|+.|.+.|.+...|.
T Consensus 484 lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred cCCCEECCeEEEEEEeCHHHhh
Confidence 9999999999999999877553
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.4e-31 Score=298.31 Aligned_cols=308 Identities=20% Similarity=0.305 Sum_probs=218.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
...++|||+|||+.+++++|+++|+.||.|.+|.++.++.+|+++|||||+|.+.++|.+|+. |+|..+.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 456799999999999999999999999999999999999999999999999999999999996 9999999999999876
Q ss_pred CCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC------CCcEEE
Q psy3345 414 KPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGL 487 (787)
Q Consensus 414 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~a~ 487 (787)
........ ..+. ......+...+|+|.|||..+++++|.++|+.||.|..|.+.. ..++||
T Consensus 166 ~~~~~~~~-----~~~~--------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~af 232 (457)
T TIGR01622 166 QAEKNRAA-----KAAT--------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGF 232 (457)
T ss_pred chhhhhhh-----hccc--------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEE
Confidence 54311100 0000 0001122368999999999999999999999999999988874 347999
Q ss_pred EEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCcccccccccccccccc--cccccc-ccchh-hhhcccccc-------
Q psy3345 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKE--KNEEEG-EEGEE-EKKENTAEE------- 556 (787)
Q Consensus 488 V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~------- 556 (787)
|+|.+.++|..|+..|+|..+.|++|.|.|+.................. ...... ..... .........
T Consensus 233 V~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (457)
T TIGR01622 233 IQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLI 312 (457)
T ss_pred EEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccC
Confidence 9999999999999999999999999999997533211111000000000 000000 00000 000000000
Q ss_pred -----------cccCC------Cc---cccc----cccc--ccccCCCCCCeEEecCCCCCCC----------HHHHHHH
Q psy3345 557 -----------DNQQG------VP---EVEE----NVEE--DEEREPEPDTTLYIKNLNFNST----------EDSIRRH 600 (787)
Q Consensus 557 -----------~~~~~------~~---~~~~----~~~~--~~~~~~~~~~~l~V~NLp~~~t----------~~~L~~~ 600 (787)
..... .+ .... .... .......+..+|+|.||....+ .++|++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e 392 (457)
T TIGR01622 313 PGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEE 392 (457)
T ss_pred CCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHH
Confidence 00000 00 0000 0000 0011335678999999955544 3679999
Q ss_pred HhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCc
Q psy3345 601 FKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664 (787)
Q Consensus 601 F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~ 664 (787)
|++||.|..+.|... .+.|++||+|.++++|..|++.|||..++|+.|.+.+...
T Consensus 393 ~~k~G~v~~v~v~~~---------~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 393 CSKYGGVVHIYVDTK---------NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHhcCCeeEEEEeCC---------CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999999998742 3569999999999999999999999999999999998753
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2e-31 Score=298.92 Aligned_cols=271 Identities=21% Similarity=0.282 Sum_probs=214.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC------CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEE
Q psy3345 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 517 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 517 (787)
.....+|||.|||..+++++|.++|+.||.|..|.+.. .+++|||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34568999999999999999999999999999999865 35799999999999999996 999999999999987
Q ss_pred ecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHH
Q psy3345 518 APEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSI 597 (787)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L 597 (787)
.....-..... .. .........++|||+|||+.+++++|
T Consensus 165 ~~~~~~~~~~~--------------------------~~---------------~~~~~~p~~~~l~v~nl~~~~te~~l 203 (457)
T TIGR01622 165 SQAEKNRAAKA--------------------------AT---------------HQPGDIPNFLKLYVGNLHFNITEQEL 203 (457)
T ss_pred cchhhhhhhhc--------------------------cc---------------ccCCCCCCCCEEEEcCCCCCCCHHHH
Confidence 63321000000 00 00001122689999999999999999
Q ss_pred HHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchh-------
Q psy3345 598 RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEA------- 670 (787)
Q Consensus 598 ~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~------- 670 (787)
+++|++||.|..|.+..+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++........
T Consensus 204 ~~~f~~~G~i~~v~~~~d~~-----~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~ 278 (457)
T TIGR01622 204 RQIFEPFGDIEDVQLHRDPE-----TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFED 278 (457)
T ss_pred HHHHHhcCCeEEEEEEEcCC-----CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhcc
Confidence 99999999999999998765 568999999999999999999999999999999999999642110000
Q ss_pred -----------------hh---------------------------hhh-----------------------ccccc--c
Q psy3345 671 -----------------TT---------------------------VKR-----------------------KSSNV--A 681 (787)
Q Consensus 671 -----------------~~---------------------------~~~-----------------------~~~~~--~ 681 (787)
.. ... ..... .
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
T TIGR01622 279 IDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNN 358 (457)
T ss_pred ccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccC
Confidence 00 000 00000 1
Q ss_pred CCCCCEEEEecCCccCc----------HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCC
Q psy3345 682 KQTGSKILVRNIPFQAK----------QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS 751 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t----------~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~ 751 (787)
..+..+|+|.||....+ .+||++.|++||.|..|.|... ...|++||.|.+.++|.+|++.|| |
T Consensus 359 ~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~-----~~~G~~fV~F~~~e~A~~A~~~ln-G 432 (457)
T TIGR01622 359 NLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK-----NSAGKIYLKFSSVDAALAAFQALN-G 432 (457)
T ss_pred CCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC-----CCceeEEEEECCHHHHHHHHHHhc-C
Confidence 24678999999955444 3689999999999999999644 257999999999999999999997 7
Q ss_pred eeecCceEEEEEcccc
Q psy3345 752 THLYGRRLVLEWAEEA 767 (787)
Q Consensus 752 ~~~~Gr~l~v~~A~~~ 767 (787)
+.|.||.|.+.|..++
T Consensus 433 r~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 433 RYFGGKMITAAFVVND 448 (457)
T ss_pred cccCCeEEEEEEEcHH
Confidence 9999999999998744
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=1.3e-30 Score=286.24 Aligned_cols=80 Identities=18% Similarity=0.320 Sum_probs=76.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
++|||+|||+++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.+|++.||+..++|+.|+|.++...
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 47999999999999999999999999999999999888999999999999999999999999999999999999987753
No 24
>KOG0148|consensus
Probab=99.97 E-value=3.3e-31 Score=249.57 Aligned_cols=234 Identities=23% Similarity=0.327 Sum_probs=190.3
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeecccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecccCCcccc
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY 300 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~~~~~~~~ 300 (787)
...++|||+||..++||+-|..+|+.+|.+ ..+++ |. .|.|
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i--------~~-------------------e~~v----------- 45 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI--------FD-------------------ELKV----------- 45 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceee--------hh-------------------hhcc-----------
Confidence 457899999999999999999999999998 44443 11 1222
Q ss_pred CCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceE
Q psy3345 301 SGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGF 380 (787)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~ 380 (787)
.|.-.+ .............|||+.|...++.++|++.|.+||+|.+++|++|..|++++||
T Consensus 46 ------------------~wa~~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGY 106 (321)
T KOG0148|consen 46 ------------------NWATAP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGY 106 (321)
T ss_pred ------------------ccccCc-ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccce
Confidence 110000 0001112222457999999999999999999999999999999999999999999
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCC
Q psy3345 381 ALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460 (787)
Q Consensus 381 afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t 460 (787)
+||.|.+.++|++||..|||.+|++|.|+..|+..+..... +. ...-.+ . .......+++|+|.|++..++
T Consensus 107 gFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n--~~-~ltfde----V--~NQssp~NtsVY~G~I~~~lt 177 (321)
T KOG0148|consen 107 GFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMN--GK-PLTFDE----V--YNQSSPDNTSVYVGNIASGLT 177 (321)
T ss_pred eEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccC--CC-CccHHH----H--hccCCCCCceEEeCCcCcccc
Confidence 99999999999999999999999999999999997731111 00 000000 0 112456789999999999999
Q ss_pred HHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc
Q psy3345 461 PTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 461 ~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 521 (787)
+++|++.|++||.|..|++.+++++|||.|.+.|.|.+||..+|++.+.|..+++.|....
T Consensus 178 e~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 178 EDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999766
No 25
>KOG0148|consensus
Probab=99.97 E-value=3.5e-31 Score=249.45 Aligned_cols=234 Identities=22% Similarity=0.371 Sum_probs=194.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccc
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAE 525 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~ 525 (787)
..++|+|.||..++|++-|..||++.|.|.++++..+ .|.|.|+....
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------e~~v~wa~~p~--- 52 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------ELKVNWATAPG--- 52 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------hhccccccCcc---
Confidence 3578999999999999999999999999988877633 34555553220
Q ss_pred cccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcC
Q psy3345 526 AKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCG 605 (787)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G 605 (787)
.+ .......-..+||+.|.+.++.+.|++.|.+||
T Consensus 53 --nQ-------------------------------------------sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFG 87 (321)
T KOG0148|consen 53 --NQ-------------------------------------------SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFG 87 (321)
T ss_pred --cC-------------------------------------------CCCccccceeEEehhcchhcchHHHHHHhcccc
Confidence 00 000111235799999999999999999999999
Q ss_pred CeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhh--hhhccccccCC
Q psy3345 606 PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATT--VKRKSSNVAKQ 683 (787)
Q Consensus 606 ~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~--~~~~~~~~~~~ 683 (787)
.|.+++|++|.. ++.|+|||||.|.+.++|+.||..|||..|++|.|+-.|+.++....... ....-..+...
T Consensus 88 evS~akvirD~~-----T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp 162 (321)
T KOG0148|consen 88 EVSDAKVIRDMN-----TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSP 162 (321)
T ss_pred ccccceEeeccc-----CCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCC
Confidence 999999999987 88999999999999999999999999999999999999998876311100 00111123345
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..|+|||.|++..+|+++|++.|++||.|..||+.++ +||+||.|.+.++|.+||..+| ++.+.|..++..|
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~mN-ntei~G~~VkCsW 234 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-------QGYAFVRFETKEAAAHAIVQMN-NTEIGGQLVRCSW 234 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-------cceEEEEecchhhHHHHHHHhc-CceeCceEEEEec
Confidence 6899999999999999999999999999999999998 6999999999999999999997 6999999999999
Q ss_pred cccccc
Q psy3345 764 AEEADN 769 (787)
Q Consensus 764 A~~~~~ 769 (787)
.++...
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 986554
No 26
>KOG4211|consensus
Probab=99.97 E-value=1.5e-30 Score=266.06 Aligned_cols=369 Identities=17% Similarity=0.270 Sum_probs=250.5
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
.--|.+|+ |||+||++||.+||+.++ |+++.+.+. +|+.+|.|||.|++.||+++|+++ |+..|..|+|+|+
T Consensus 10 ~~~vr~rG-----LPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 10 AFEVRLRG-----LPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred ceEEEecC-----CCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 34588888 999999999999999995 789666553 799999999999999999999999 9999999999999
Q ss_pred EccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCCCc
Q psy3345 92 KCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGEE 171 (787)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (787)
.+.. .+..| +|.+...
T Consensus 82 ~~~~-----~e~d~-----------------------------------------------~~~~~g~------------ 97 (510)
T KOG4211|consen 82 TAGG-----AEADW-----------------------------------------------VMRPGGP------------ 97 (510)
T ss_pred ccCC-----ccccc-----------------------------------------------cccCCCC------------
Confidence 8875 11111 1111100
Q ss_pred cccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCCCCc
Q psy3345 172 KEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA 251 (787)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v 251 (787)
.......+|.|++||++||++||.+||+++.++
T Consensus 98 -----------------------------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv 130 (510)
T KOG4211|consen 98 -----------------------------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIV 130 (510)
T ss_pred -----------------------------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCccc
Confidence 011356799999999999999999999999887
Q ss_pred c--eeec------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecccCCcccc----------CCCcCCCC--ch-
Q psy3345 252 S--VRTT------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY----------SGAADDNN--NA- 310 (787)
Q Consensus 252 ~--i~i~------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~~~~~~~~----------~~~~~~~~--~~- 310 (787)
. |.++ ++|.|||.|.+.+.|+.||.+|...|+.|+|+|++......... +.+.+... ..
T Consensus 131 ~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~ 210 (510)
T KOG4211|consen 131 PDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGG 210 (510)
T ss_pred ccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccc
Confidence 3 4444 67999999999999999999999999999999986221111100 01111100 00
Q ss_pred ---------------------------------------hhhhhhhccccc-----ccchhhh-hcccCCCCeEEEcCCC
Q psy3345 311 ---------------------------------------SMENIKAKHWKS-----QEDSVQF-AEDIAESGRIFVRNLS 345 (787)
Q Consensus 311 ---------------------------------------~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~l~V~nLp 345 (787)
+........+.. ....... ........+++.++||
T Consensus 211 ~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlp 290 (510)
T KOG4211|consen 211 YDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLP 290 (510)
T ss_pred cccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCC
Confidence 000000000000 0000000 0111223789999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCC--
Q psy3345 346 YTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD-- 423 (787)
Q Consensus 346 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~-- 423 (787)
+..++.+|..+|+..-+ ..|+|... .+|+.+|.|+|+|.+.++|..|+. .++..++.+.+.+.............
T Consensus 291 y~a~~~di~nfFspl~p-~~v~i~ig-~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln~~~ga~g~~~~s 367 (510)
T KOG4211|consen 291 YDATENDIANFFSPLNP-YRVHIEIG-PDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGAPGASGGGGPS 367 (510)
T ss_pred ccCCCcchhhhcCCCCc-eeEEEEeC-CCCccCCcceeecccchhhHhhhc-cCCcccCcceeeecccCCcccccCccCC
Confidence 99999999999998744 47777666 469999999999999999999996 68889999999886543221100000
Q ss_pred --------------C---Cccccccc-----------cccchhh-------------hhhhcCCCCEEEEeCCCCCCCHH
Q psy3345 424 --------------G---KVHCCISE-----------RKLDAFN-------------QVVEARSKRIILVKNLPYRTLPT 462 (787)
Q Consensus 424 --------------~---~~~~a~~~-----------~~~~~~~-------------~~~~~~~~~~i~v~nlp~~~t~~ 462 (787)
+ +.+...+. ...+..+ ..........|-.+++|+..++.
T Consensus 368 ~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~ea 447 (510)
T KOG4211|consen 368 GPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEA 447 (510)
T ss_pred CCCCccccccccCCCCccccccccCCCCCccccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCcccccc
Confidence 0 00000000 0000000 00122235678889999999999
Q ss_pred HHHHhhccCCCee-EEEecC---CCcEEEEEeCCHHHHHHHHHH
Q psy3345 463 DLKALFEPFGDLG-RVLVPP---YGITGLVEFLQKNQAKAAFNS 502 (787)
Q Consensus 463 ~l~~~F~~~G~v~-~v~i~~---~~~~a~V~F~~~~~A~~A~~~ 502 (787)
++.++|.++++-. .+..+. ..+.|-|-|.+.++++.|+.+
T Consensus 448 dv~d~~~~~~~a~~~~~yd~~~~~~~~a~~~~~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 448 DVYDFFHPIRPAQVELLYDHQFQRSGDARVIFYNRKDYQDALMK 491 (510)
T ss_pred chhhcccccCcccccccccccccccCceeEEEechhhhHHHHHh
Confidence 9999999988642 222222 245799999999999999874
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=8.1e-30 Score=280.13 Aligned_cols=175 Identities=24% Similarity=0.381 Sum_probs=149.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEe
Q psy3345 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI 411 (787)
Q Consensus 332 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 411 (787)
.....++|||+|||+++++++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC------CCcE
Q psy3345 412 PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGIT 485 (787)
Q Consensus 412 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~ 485 (787)
+......... .. +. ........++|||+|||.++++++|+++|+.||.|.++.+.+ .+|+
T Consensus 183 rp~~~p~a~~-------~~-----~~--~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGf 248 (612)
T TIGR01645 183 RPSNMPQAQP-------II-----DM--VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY 248 (612)
T ss_pred cccccccccc-------cc-----cc--ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCe
Confidence 6442210000 00 00 001122457899999999999999999999999999998865 3579
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecC
Q psy3345 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 520 (787)
Q Consensus 486 a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 520 (787)
|||+|.+.++|.+|+..||+..++|+.|.|.++..
T Consensus 249 GFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 249 GFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred EEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 99999999999999999999999999999999853
No 28
>KOG0144|consensus
Probab=99.97 E-value=8e-31 Score=262.22 Aligned_cols=269 Identities=24% Similarity=0.411 Sum_probs=221.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCc-eeCC--eEEEE
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGT-VFLG--RMLHL 410 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~-~~~g--~~l~v 410 (787)
.+.-++||+-+|..++|.||+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+. .|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34558999999999999999999999999999999999999999999999999999999999999864 2222 33333
Q ss_pred eeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEe
Q psy3345 411 IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEF 490 (787)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F 490 (787)
.++..
T Consensus 112 k~Ad~--------------------------------------------------------------------------- 116 (510)
T KOG0144|consen 112 KYADG--------------------------------------------------------------------------- 116 (510)
T ss_pred cccch---------------------------------------------------------------------------
Confidence 33221
Q ss_pred CCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccc
Q psy3345 491 LQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVE 570 (787)
Q Consensus 491 ~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (787)
+
T Consensus 117 ------------------------------E------------------------------------------------- 117 (510)
T KOG0144|consen 117 ------------------------------E------------------------------------------------- 117 (510)
T ss_pred ------------------------------h-------------------------------------------------
Confidence 1
Q ss_pred cccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q psy3345 571 EDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNS 650 (787)
Q Consensus 571 ~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~ 650 (787)
.+.....+.|||+-|+..+|+.+++++|++||.|++|.|+++.+ +.|+|||||.|.+.+.|..|++.|||.
T Consensus 118 ---~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 118 ---RERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------GLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ---hhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc------ccccceeEEEEehHHHHHHHHHhhccc
Confidence 00011246799999999999999999999999999999999987 889999999999999999999999995
Q ss_pred -ccCC--eEEEEEecCccccch----------------------------------------------------------
Q psy3345 651 -SLDE--HQIELKRSNRNLESE---------------------------------------------------------- 669 (787)
Q Consensus 651 -~l~g--~~l~v~~~~~~~~~~---------------------------------------------------------- 669 (787)
.+.| .+|.|+|++....-.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~ 268 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGP 268 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCC
Confidence 5666 489999997431110
Q ss_pred --------------------------hh------hh----------------h-------------h-------------
Q psy3345 670 --------------------------AT------TV----------------K-------------R------------- 675 (787)
Q Consensus 670 --------------------------~~------~~----------------~-------------~------------- 675 (787)
.. .+ . +
T Consensus 269 l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~ 348 (510)
T KOG0144|consen 269 LNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLA 348 (510)
T ss_pred cchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccc
Confidence 00 00 0 0
Q ss_pred ------------------------------------------------------------------ccccccCCCCCEEE
Q psy3345 676 ------------------------------------------------------------------KSSNVAKQTGSKIL 689 (787)
Q Consensus 676 ------------------------------------------------------------------~~~~~~~~~~~~l~ 689 (787)
.........+.+||
T Consensus 349 ~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlf 428 (510)
T KOG0144|consen 349 GGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLF 428 (510)
T ss_pred cccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcccee
Confidence 00011134689999
Q ss_pred EecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccc
Q psy3345 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767 (787)
Q Consensus 690 V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~ 767 (787)
|.+||-+.-+.||...|..||.|.+.++..++ -+|-+++|+||.|++..+|.+||..|| |.++++++|+|.....+
T Consensus 429 iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk-~tnlskcfgfvSyen~~sa~~aI~amn-gfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 429 IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDK-VTNLSKCFGFVSYENAQSAQNAISAMN-GFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eeeCchhhhhHHHHHHhccccceeEEEEEEec-ccCHhhhcCcccccchhhhHHHHHHhc-chhhccccceEEeeecc
Confidence 99999999999999999999999999998886 689999999999999999999999997 79999999999987643
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.2e-28 Score=258.69 Aligned_cols=173 Identities=23% Similarity=0.404 Sum_probs=155.5
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q psy3345 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEH 655 (787)
Q Consensus 576 ~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~ 655 (787)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+++.. ++.++|||||+|.+.++|.+|+..|||..+.++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~-----tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK-----TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 445678999999999999999999999999999999998876 678999999999999999999999999999999
Q ss_pred EEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEe
Q psy3345 656 QIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735 (787)
Q Consensus 656 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F 735 (787)
+|+|.++..... ....++|||.|||..+|+++|+++|++||.|..++|+++. .+|+++|||||+|
T Consensus 178 ~i~V~~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~-~tg~~kG~aFV~F 242 (346)
T TIGR01659 178 RLKVSYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK-LTGTPRGVAFVRF 242 (346)
T ss_pred eeeeeccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC-CCCccceEEEEEE
Confidence 999998764322 1235789999999999999999999999999999999885 6899999999999
Q ss_pred cCHHHHHHHHHHhcCCeeecC--ceEEEEEcccccc
Q psy3345 736 ITKNEAKRAMKALCQSTHLYG--RRLVLEWAEEADN 769 (787)
Q Consensus 736 ~~~~~A~~Al~~l~~~~~~~G--r~l~v~~A~~~~~ 769 (787)
.+.++|.+||+.|| +..+.| ++|.|.||++...
T Consensus 243 ~~~e~A~~Ai~~ln-g~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 243 NKREEAQEAISALN-NVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCHHHHHHHHHHhC-CCccCCCceeEEEEECCcccc
Confidence 99999999999997 687766 7999999986543
No 30
>KOG0144|consensus
Probab=99.96 E-value=5.5e-29 Score=249.08 Aligned_cols=159 Identities=22% Similarity=0.367 Sum_probs=134.2
Q ss_pred ccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-------ccceEEEeecChHhHHHHHh-cC-CcccCCe--eEEEe
Q psy3345 223 QYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-------FLGMAYIGFKDEKNCNKALN-KN-KSFWKGK--QLNIY 290 (787)
Q Consensus 223 ~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-------~~g~afV~F~~~~~A~~Al~-~~-~~~l~g~--~i~v~ 290 (787)
+.-.+||+-||.+++|.||+++|..||.| +|.|+ ++|||||.|.+.++|.+|+. +| .+.|.|. +|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34569999999999999999999999998 78777 67999999999999999998 54 5667664 55552
Q ss_pred ecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEec
Q psy3345 291 KYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPI 370 (787)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 370 (787)
+ + +.+.+...+.++|||+-|+..+||.+|+++|++||.|.+|.|++
T Consensus 113 ~-A---------------------------------d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 113 Y-A---------------------------------DGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred c-c---------------------------------chhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 1 0 01112334567899999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEcCHHHHHHHHHHhCCc-eeCC--eEEEEeeCCCC
Q psy3345 371 DKETDKTKGFALVTFLMPEHATQAYQHLDGT-VFLG--RMLHLIPGKPK 416 (787)
Q Consensus 371 ~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~-~~~g--~~l~v~~~~~~ 416 (787)
+. .+.++|||||.|.+.+.|..|++.|||. .+.| .+|.|.|+.++
T Consensus 159 d~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 159 DP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred cc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 85 5899999999999999999999999996 4544 79999999876
No 31
>KOG1190|consensus
Probab=99.95 E-value=1.1e-26 Score=231.04 Aligned_cols=410 Identities=17% Similarity=0.198 Sum_probs=277.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEEEe
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGT--VFLGRMLHLI 411 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v~ 411 (787)
.+++.|++||||.+++|++|..++.+||.|..+.+.+.+ ..||++|.+.+.|..-+..+... .+.|++|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 367789999999999999999999999999999886543 27999999999998855433222 5688999988
Q ss_pred eCCCCCCCCCCC-----C-Cc---cccccccccc--h--hh--hhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeE
Q psy3345 412 PGKPKENEGNVD-----G-KV---HCCISERKLD--A--FN--QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR 476 (787)
Q Consensus 412 ~~~~~~~~~~~~-----~-~~---~~a~~~~~~~--~--~~--~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~ 476 (787)
++.-.+...... + .+ -.+..+..+. . .. .......--.++|.|+-+.++.+-|..+|++||.|.+
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 865432111100 0 00 0000010000 0 00 1111223445778999999999999999999999998
Q ss_pred EEecC-CCc-EEEEEeCCHHHHHHHHHHhcCCeeCC--eeEEEEEecCccccccccccccccccccccccccchhhhhcc
Q psy3345 477 VLVPP-YGI-TGLVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKEN 552 (787)
Q Consensus 477 v~i~~-~~~-~a~V~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (787)
|.-.. +.+ .|+|+|.+++.|..|...|+|+.++. +.|+++|..-..........+.+............++.-...
T Consensus 180 IiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~ 259 (492)
T KOG1190|consen 180 IITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQL 259 (492)
T ss_pred EEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchh
Confidence 77554 555 59999999999999999999999873 688899887766666666555554221111111111100000
Q ss_pred cccccc--------cCCCcccccc-cccccccCCC-CCCeEEecCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCCCC
Q psy3345 553 TAEEDN--------QQGVPEVEEN-VEEDEEREPE-PDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTVARKKDPKSP 621 (787)
Q Consensus 553 ~~~~~~--------~~~~~~~~~~-~~~~~~~~~~-~~~~l~V~NLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~ 621 (787)
...... ....+..... .......... ....|.|.||... +|.+-|..+|..||.|..|+|+.++.
T Consensus 260 ~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---- 335 (492)
T KOG1190|consen 260 MAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---- 335 (492)
T ss_pred hhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----
Confidence 000000 0000000000 0000011111 2578899999776 89999999999999999999998653
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccch---------------hhhhhhcccc------c
Q psy3345 622 GQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESE---------------ATTVKRKSSN------V 680 (787)
Q Consensus 622 ~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~---------------~~~~~~~~~~------~ 680 (787)
--|.|+|.+..+|+-|+..|+|..|.|+.|+|.+++...-.. .....+.+.+ .
T Consensus 336 ------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n 409 (492)
T KOG1190|consen 336 ------DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN 409 (492)
T ss_pred ------cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc
Confidence 469999999999999999999999999999999997532210 0111111111 1
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC-ceE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG-RRL 759 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G-r~l 759 (787)
...|+.+|++.|+|..+++++|+..|..-|...+... . -+..+.+|.+.+.+.++|..|+..+.+ ..+.+ ..|
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafk--f---f~kd~kmal~q~~sveeA~~ali~~hn-h~lgen~hl 483 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK--F---FQKDRKMALPQLESVEEAIQALIDLHN-HYLGENHHL 483 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeee--e---cCCCcceeecccCChhHhhhhcccccc-ccCCCCceE
Confidence 1347789999999999999999999998887644332 1 133567999999999999999999953 66665 599
Q ss_pred EEEEcc
Q psy3345 760 VLEWAE 765 (787)
Q Consensus 760 ~v~~A~ 765 (787)
+|+|.+
T Consensus 484 RvSFSk 489 (492)
T KOG1190|consen 484 RVSFSK 489 (492)
T ss_pred EEEeec
Confidence 999986
No 32
>KOG1190|consensus
Probab=99.95 E-value=2.4e-26 Score=228.61 Aligned_cols=409 Identities=19% Similarity=0.199 Sum_probs=266.1
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-ccceEEEeecChHhHHHHHhc---CCcccCCeeEEEeecccCC
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-FLGMAYIGFKDEKNCNKALNK---NKSFWKGKQLNIYKYSKDN 296 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-~~g~afV~F~~~~~A~~Al~~---~~~~l~g~~i~v~~~~~~~ 296 (787)
..+++|++||||.+++|.||.+++.+||.+ .+.++ .+..||++|.++++|...+.. -.-.|.|++|.|+. .+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~---sn 102 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY---SN 102 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehh---hh
Confidence 467899999999999999999999999998 55554 667999999999999886662 24567888888852 11
Q ss_pred cccc--C-CCcCCCCchhhhh-----hhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q psy3345 297 SAKY--S-GAADDNNNASMEN-----IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL 368 (787)
Q Consensus 297 ~~~~--~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 368 (787)
.... . .+........... ....+.+..............--+++|.|+-+.++-+-|..+|++||.|..|.-
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 1110 0 0000000000000 000000000000001111223347889999999999999999999999999765
Q ss_pred ecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE--EEEeeCCCC--------CCCCCCC------C--------
Q psy3345 369 PIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRM--LHLIPGKPK--------ENEGNVD------G-------- 424 (787)
Q Consensus 369 ~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~--l~v~~~~~~--------~~~~~~~------~-------- 424 (787)
... ...-.|.|+|.+.+.|+.|...|+|+.|..-+ |+|.++.-. +++.+.. +
T Consensus 183 F~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 183 FTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred Eec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 432 12225999999999999999999999886644 444443221 0111000 0
Q ss_pred -------Cc------cccccc---cccchhhhhhhcCCCCEEEEeCCCC-CCCHHHHHHhhccCCCeeEEEecCCC-cEE
Q psy3345 425 -------KV------HCCISE---RKLDAFNQVVEARSKRIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYG-ITG 486 (787)
Q Consensus 425 -------~~------~~a~~~---~~~~~~~~~~~~~~~~~i~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~-~~a 486 (787)
+. ..++.. ..............+..|.|.||.. .+|.+-|..+|..||.|.+|.|..++ ..|
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~A 338 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNA 338 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcce
Confidence 00 000000 0000000000111267889999865 58999999999999999999998755 489
Q ss_pred EEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccc
Q psy3345 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566 (787)
Q Consensus 487 ~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (787)
+|+|.+..+|..|+..|+|..++|++|+|.+..-....-+.... +......+....+.+...
T Consensus 339 LIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq------------------~d~glT~dy~~spLhrfk 400 (492)
T KOG1190|consen 339 LIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ------------------EDQGLTKDYGNSPLHRFK 400 (492)
T ss_pred eeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC------------------ccccccccCCCCchhhcc
Confidence 99999999999999999999999999999988543111111000 001111111222222222
Q ss_pred cccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy3345 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKV 646 (787)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~ 646 (787)
....+.......+..+|.+.|||.++++++++++|..-|...+..... +..+-++++.+.+.++|..|+..
T Consensus 401 kpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---------~kd~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 401 KPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---------QKDRKMALPQLESVEEAIQALID 471 (492)
T ss_pred CcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---------CCCcceeecccCChhHhhhhccc
Confidence 222222233446678999999999999999999999998765554443 23456999999999999999999
Q ss_pred hCCCccCC-eEEEEEecCc
Q psy3345 647 LQNSSLDE-HQIELKRSNR 664 (787)
Q Consensus 647 lng~~l~g-~~l~v~~~~~ 664 (787)
++++.+++ +.|+|+|++.
T Consensus 472 ~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 472 LHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccccCCCCceEEEEeecc
Confidence 99999875 6999999864
No 33
>KOG4211|consensus
Probab=99.94 E-value=1.2e-25 Score=230.26 Aligned_cols=418 Identities=17% Similarity=0.226 Sum_probs=261.9
Q ss_pred CCccceEEEeCCCCCCCHHhHHHhhcCCCCcceeec-----ccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecccC
Q psy3345 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTT-----FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKD 295 (787)
Q Consensus 221 ~~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~-----~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~~~ 295 (787)
......|.+++||+++|++||++||+.+++.++.+. ++|.|||+|.+++++++||+++...|..|+|+|++....
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 346789999999999999999999999999886666 668999999999999999999999999999999842221
Q ss_pred CccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEecCCCC
Q psy3345 296 NSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAE-VILPIDKET 374 (787)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~ 374 (787)
.. .|...... .........|.+++||+.+|++||.+||+..-.+.. |.++.+. .
T Consensus 87 e~---------------------d~~~~~~g---~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-r 141 (510)
T KOG4211|consen 87 EA---------------------DWVMRPGG---PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-R 141 (510)
T ss_pred cc---------------------cccccCCC---CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-C
Confidence 11 12100000 011134568999999999999999999998744444 4455554 5
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeC
Q psy3345 375 DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKN 454 (787)
Q Consensus 375 ~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~n 454 (787)
++++|.|||+|++.+.|++|+. .|...|..|.|.|..+...+........ .+.+.-
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~-----------------------~~~~~r 197 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRAAGPG-----------------------DGRVGR 197 (510)
T ss_pred CCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhhcccc-----------------------ccccCC
Confidence 8899999999999999999997 5778999999999887654221111000 000000
Q ss_pred -CCCCCCHHHHHHhhccCCCeeE-------EEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCcccccc
Q psy3345 455 -LPYRTLPTDLKALFEPFGDLGR-------VLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEA 526 (787)
Q Consensus 455 -lp~~~t~~~l~~~F~~~G~v~~-------v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~ 526 (787)
=|+..- .-.+-... |+.-.. -.....+..+|+.+....+-.. -+....++.+.. ....
T Consensus 198 pGpy~~~-~a~Rg~~d-~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~-----~gs~~~~~~~~~--~~~~----- 263 (510)
T KOG4211|consen 198 PGPYDRP-GAPRGGYD-YGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGN-----FGSYGGGRDPNY--PVSS----- 263 (510)
T ss_pred CCccccc-cCCccccc-cccccCCCccccccccccCCccccccCcccccccc-----cccccccccccc--CCCC-----
Confidence 000000 00000000 000000 0000111122222221110000 000000000000 0000
Q ss_pred ccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCC
Q psy3345 527 KEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP 606 (787)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~ 606 (787)
.+ . ..............+..+..++||+..+..++.++|+..-.
T Consensus 264 ---------------g~--------------------~-~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p 307 (510)
T KOG4211|consen 264 ---------------GP--------------------H-RQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP 307 (510)
T ss_pred ---------------Cc--------------------c-cCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc
Confidence 00 0 00000000112223378999999999999999999997665
Q ss_pred eEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccch-----------------
Q psy3345 607 IASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESE----------------- 669 (787)
Q Consensus 607 v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~----------------- 669 (787)
+ .|.|-..++ ++.+|-|+|+|.|.++|..|+. -++..+..+-+.+..........
T Consensus 308 ~-~v~i~ig~d------Gr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~ 379 (510)
T KOG4211|consen 308 Y-RVHIEIGPD------GRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRN 379 (510)
T ss_pred e-eEEEEeCCC------CccCCcceeecccchhhHhhhc-cCCcccCcceeeecccCCcccccCccCCCCCCcccccccc
Confidence 5 777777665 7899999999999999999998 45677777666664432110000
Q ss_pred --------h----------------hhhhh-------------ccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCe
Q psy3345 670 --------A----------------TTVKR-------------KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGEL 712 (787)
Q Consensus 670 --------~----------------~~~~~-------------~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I 712 (787)
. ..... .-...+......|..+++|...++.|+.++|.+++ -
T Consensus 380 ~~Gg~a~g~~~gG~~g~~~~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~-~ 458 (510)
T KOG4211|consen 380 GGGGYASGSYGGGGNGGGGRGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIR-P 458 (510)
T ss_pred CCCCccccccccCCCCCccccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccC-c
Confidence 0 00000 00001122456778899999999999999999988 4
Q ss_pred eEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHh
Q psy3345 713 KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748 (787)
Q Consensus 713 ~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l 748 (787)
-.|.+..+ ...++.|-|-|.|.+.++++.||..-
T Consensus 459 a~~~~~yd--~~~~~~~~a~~~~~~~~~~q~a~~~~ 492 (510)
T KOG4211|consen 459 AQVELLYD--HQFQRSGDARVIFYNRKDYQDALMKD 492 (510)
T ss_pred cccccccc--ccccccCceeEEEechhhhHHHHHhh
Confidence 56888888 46777889999999999999999873
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.5e-25 Score=235.32 Aligned_cols=164 Identities=22% Similarity=0.327 Sum_probs=147.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
....++|||+|||+++|+++|+++|+.||+|.+|+|+.+..+++++|||||+|.+.++|.+|++.|++..+.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEE
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITG 486 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a 486 (787)
+.+.. .....++|+|.|||..+++++|+++|++||.|..+.|.++ +++|
T Consensus 184 a~p~~-------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~a 238 (346)
T TIGR01659 184 ARPGG-------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVA 238 (346)
T ss_pred ccccc-------------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEE
Confidence 76431 1123568999999999999999999999999998888764 3699
Q ss_pred EEEeCCHHHHHHHHHHhcCCeeCC--eeEEEEEecCc
Q psy3345 487 LVEFLQKNQAKAAFNSLAYTKFKE--VPLYLEWAPEG 521 (787)
Q Consensus 487 ~V~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~~~~~ 521 (787)
||+|.+.++|.+|++.|++..+.+ ++|.|.|+...
T Consensus 239 FV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 239 FVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999999999999998875 78999998654
No 35
>KOG4212|consensus
Probab=99.93 E-value=9.1e-25 Score=218.55 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=192.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFE-KYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
..+.+||.|+||++...+|+++|. +.|.|..|.+..| ..|+++|||.|+|+++|.+++|++.||...+.||+|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999996 6799999999998 46999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC-----CCcEEEE
Q psy3345 414 KPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-----YGITGLV 488 (787)
Q Consensus 414 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-----~~~~a~V 488 (787)
...+... .....+.....++.++...+-..-|...|+--|.+.+-.+.+ +++..++
T Consensus 122 ~d~q~~~-------------------~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~ 182 (608)
T KOG4212|consen 122 HDEQRDQ-------------------YGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTN 182 (608)
T ss_pred Cchhhhh-------------------hhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcc
Confidence 4321110 112344567789999999998888888888777655444433 3346789
Q ss_pred EeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccc
Q psy3345 489 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEEN 568 (787)
Q Consensus 489 ~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (787)
.|.+.-.+..++.-++.....-+++.+ +.|+
T Consensus 183 t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~pP------------------------------------------------ 213 (608)
T KOG4212|consen 183 TMSNDYNNSSNYNLFGLSASFLRSLHI-FSPP------------------------------------------------ 213 (608)
T ss_pred ccccccccchhhhcccchhhhhhhccC-CCCC------------------------------------------------
Confidence 998888888777755555444454443 2222
Q ss_pred cccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy3345 569 VEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQ 648 (787)
Q Consensus 569 ~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~ln 648 (787)
....+||.||.+.+....|.+.|.-.|.|.++.+-.++. +.++||+.++|..+-+|..|+..++
T Consensus 214 ----------l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe------G~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 214 ----------LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE------GNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred ----------ccceeeeeccccccchHHHHHHhccceeeeeeceeeccc------cccCCeeEEEecchHHHHHHHHhhc
Confidence 234689999999999999999999999999999988876 6889999999999999999999998
Q ss_pred CCccCCeEEEEEe
Q psy3345 649 NSSLDEHQIELKR 661 (787)
Q Consensus 649 g~~l~g~~l~v~~ 661 (787)
+.-+..++..+.+
T Consensus 278 ~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 278 RQGLFDRRMTVRL 290 (608)
T ss_pred cCCCccccceeec
Confidence 7666666555544
No 36
>KOG0147|consensus
Probab=99.93 E-value=3.6e-26 Score=237.32 Aligned_cols=290 Identities=22% Similarity=0.276 Sum_probs=222.5
Q ss_pred cCCCccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEe
Q psy3345 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIY 290 (787)
Q Consensus 219 ~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 290 (787)
...|..++|++.-|+...++.||.+||+..|.| +|+++ ++|.|||+|.+.+....|+.+.|..+.|.+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 456788999999999999999999999999998 89988 6799999999999999999999999999999995
Q ss_pred ec-ccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q psy3345 291 KY-SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP 369 (787)
Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~ 369 (787)
.- ++++.. + ....|- +...-..+..+|||+||.+++|++.|+.+|++||.|..|.++
T Consensus 254 ~sEaeknr~-a---------------~~s~a~------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~ 311 (549)
T KOG0147|consen 254 LSEAEKNRA-A---------------NASPAL------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLT 311 (549)
T ss_pred ccHHHHHHH-H---------------hccccc------cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeec
Confidence 20 000000 0 000110 000112233349999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC-CCCCC------CC-----CCccccccc-----
Q psy3345 370 IDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK-ENEGN------VD-----GKVHCCISE----- 432 (787)
Q Consensus 370 ~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~-~~~~~------~~-----~~~~~a~~~----- 432 (787)
++..||.++||+||+|.+.++|++|+.+|||..+-|+.|+|...... ..... .+ +-.-.+.+.
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~ 391 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMA 391 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHH
Confidence 99889999999999999999999999999999999999999876554 11100 00 000000000
Q ss_pred -----------------------cccch-------hhhhhhc-------CCCCEEEEeCCCCCCC----------HHHHH
Q psy3345 433 -----------------------RKLDA-------FNQVVEA-------RSKRIILVKNLPYRTL----------PTDLK 465 (787)
Q Consensus 433 -----------------------~~~~~-------~~~~~~~-------~~~~~i~v~nlp~~~t----------~~~l~ 465 (787)
..... ....... .++.|++++|+-...| .+|+.
T Consensus 392 kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~ 471 (549)
T KOG0147|consen 392 KLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVI 471 (549)
T ss_pred HHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHH
Confidence 00000 0001111 4567888899843322 36889
Q ss_pred HhhccCCCeeEEEecCCC-cEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCcccccccccc
Q psy3345 466 ALFEPFGDLGRVLVPPYG-ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKS 530 (787)
Q Consensus 466 ~~F~~~G~v~~v~i~~~~-~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~ 530 (787)
+.|.+||.|.+|.++++. |+.||.|.+.+.|..|+..|||++|.|+.|...|.+...|...++..
T Consensus 472 Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~ 537 (549)
T KOG0147|consen 472 EECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDS 537 (549)
T ss_pred HHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCc
Confidence 999999999999999966 99999999999999999999999999999999999998887777654
No 37
>KOG0124|consensus
Probab=99.92 E-value=6.1e-24 Score=207.87 Aligned_cols=277 Identities=25% Similarity=0.416 Sum_probs=215.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
..-.|+|||+.+.+.+.|+.|+..|.+||+|.+|.+-.|+-|++++|||||+|.-++.|+-|++.|||..++||.|+|..
T Consensus 110 LaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 110 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCC
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ 492 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~ 492 (787)
.. |+|.
T Consensus 190 Ps---------------------------------------NmpQ----------------------------------- 195 (544)
T KOG0124|consen 190 PS---------------------------------------NMPQ----------------------------------- 195 (544)
T ss_pred CC---------------------------------------CCcc-----------------------------------
Confidence 22 1221
Q ss_pred HHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccc
Q psy3345 493 KNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEED 572 (787)
Q Consensus 493 ~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (787)
|+-.+..+.
T Consensus 196 ---AQpiID~vq-------------------------------------------------------------------- 204 (544)
T KOG0124|consen 196 ---AQPIIDMVQ-------------------------------------------------------------------- 204 (544)
T ss_pred ---cchHHHHHH--------------------------------------------------------------------
Confidence 111111000
Q ss_pred cccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy3345 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSL 652 (787)
Q Consensus 573 ~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l 652 (787)
.+...-.+|||..+.++.++++|+..|+.||.|.+|.+.+.+. .+..+||||++|.+...-..|+..||-+.|
T Consensus 205 --eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----~~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 205 --EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----GRGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred --HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----CCCccceeeEEeccccchHHHhhhcchhhc
Confidence 0001135799999999999999999999999999999998775 567999999999999999999999999999
Q ss_pred CCeEEEEEecCccccc----------h-------------------------------------------------hh--
Q psy3345 653 DEHQIELKRSNRNLES----------E-------------------------------------------------AT-- 671 (787)
Q Consensus 653 ~g~~l~v~~~~~~~~~----------~-------------------------------------------------~~-- 671 (787)
+|.-|+|..+-..... + ..
T Consensus 278 GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~ 357 (544)
T KOG0124|consen 278 GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVM 357 (544)
T ss_pred ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccch
Confidence 9999999876532111 0 00
Q ss_pred --------------------------------------------------hhhhcc------------------------
Q psy3345 672 --------------------------------------------------TVKRKS------------------------ 677 (787)
Q Consensus 672 --------------------------------------------------~~~~~~------------------------ 677 (787)
..+.+.
T Consensus 358 a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvM 437 (544)
T KOG0124|consen 358 AAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVM 437 (544)
T ss_pred hccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHH
Confidence 000000
Q ss_pred -ccccCCCCCEEEEecC--CccCc---HHHHHHHHHhcCCeeEEEeccccCCCCCC-----ceEEEEEecCHHHHHHHHH
Q psy3345 678 -SNVAKQTGSKILVRNI--PFQAK---QSEVEELFKAFGELKFVRLPKKMVGSGLH-----RGFGFVEFITKNEAKRAMK 746 (787)
Q Consensus 678 -~~~~~~~~~~l~V~nL--p~~~t---~~dL~~~F~~~G~I~~v~i~~~~~~~g~~-----~g~afV~F~~~~~A~~Al~ 746 (787)
.......++.+.++|+ |.+++ +.+|++.|++||.|..|-|.... .+.. ----||+|+...++.+|.+
T Consensus 438 qkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nek--q~e~edaeiiVKIFVefS~~~e~~rak~ 515 (544)
T KOG0124|consen 438 QKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEK--QGEEEDAEIIVKIFVEFSIASETHRAKQ 515 (544)
T ss_pred HHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecc--cccccchhhhheeeeeechhhHHHHHHH
Confidence 0001336778888998 55555 45799999999999998886653 1211 1136999999999999999
Q ss_pred HhcCCeeecCceEEEEEc
Q psy3345 747 ALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 747 ~l~~~~~~~Gr~l~v~~A 764 (787)
+|+ |++|.||+++.+..
T Consensus 516 ALd-GRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 516 ALD-GRFFGGRKVVAEVY 532 (544)
T ss_pred hhc-cceecCceeehhhh
Confidence 997 79999999987654
No 38
>KOG1456|consensus
Probab=99.92 E-value=5.4e-22 Score=195.19 Aligned_cols=396 Identities=19% Similarity=0.200 Sum_probs=271.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHH--HhCCceeCCeEEEE
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ--HLDGTVFLGRMLHL 410 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~--~l~~~~~~g~~l~v 410 (787)
...+-.|+|++|-..++|.+|.+.++.||+|..+.++..+ ..|.|+|.+.+-|..++. +-+...+.|+.-.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 3456689999999999999999999999999988876543 379999999999999875 22334667777666
Q ss_pred eeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEe--CCCCCCCHHHHHHhhccCCCeeEEEecC-CCcEEE
Q psy3345 411 IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK--NLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGL 487 (787)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~--nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~a~ 487 (787)
.++..+..... ......++.+|++. |--+.+|.+-|..++...|.|.+|.|.+ ++-.|.
T Consensus 102 NyStsq~i~R~------------------g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAm 163 (494)
T KOG1456|consen 102 NYSTSQCIERP------------------GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAM 163 (494)
T ss_pred ccchhhhhccC------------------CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeE
Confidence 66644311100 01122334555544 5557899999999999999999999877 555899
Q ss_pred EEeCCHHHHHHHHHHhcCCeeC-C-eeEEEEEecCcccccccccccccccccccc-------cc---ccch-------hh
Q psy3345 488 VEFLQKNQAKAAFNSLAYTKFK-E-VPLYLEWAPEGVFAEAKEKSKGKEKEKNEE-------EG---EEGE-------EE 548 (787)
Q Consensus 488 V~F~~~~~A~~A~~~l~~~~~~-g-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~-------~~ 548 (787)
|+|.+.+.|++|...|||.-++ | ++|.|+|+.+.........+.......... .. +..+ ..
T Consensus 164 VEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~ps 243 (494)
T KOG1456|consen 164 VEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPS 243 (494)
T ss_pred EeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChh
Confidence 9999999999999999999888 3 789999997764332221111111000000 00 0000 00
Q ss_pred hhcccccc----cccCCC---cc-----cccccccccccCCCCCCeEEecCCCCC-CCHHHHHHHHhhcCCeEEEEEeec
Q psy3345 549 KKENTAEE----DNQQGV---PE-----VEENVEEDEEREPEPDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTVARK 615 (787)
Q Consensus 549 ~~~~~~~~----~~~~~~---~~-----~~~~~~~~~~~~~~~~~~l~V~NLp~~-~t~~~L~~~F~~~G~v~~v~i~~~ 615 (787)
........ ....+. ++ ..+...........+++.++|.+|... ++.+.|.++|..||.|..+++++.
T Consensus 244 s~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT 323 (494)
T KOG1456|consen 244 SRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT 323 (494)
T ss_pred hcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec
Confidence 00000000 000000 00 001011111244567899999999986 678999999999999999999986
Q ss_pred CCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhh--------hh---------hhc--
Q psy3345 616 KDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEAT--------TV---------KRK-- 676 (787)
Q Consensus 616 ~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~--------~~---------~~~-- 676 (787)
+. |.|.|++.+..+.++|+..||+..+-|.+|.|..++...-.+.. .+ .+.
T Consensus 324 k~----------gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFss 393 (494)
T KOG1456|consen 324 KP----------GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSS 393 (494)
T ss_pred cc----------ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCC
Confidence 65 89999999999999999999999999999999998754322110 00 000
Q ss_pred ----cccccCCCCCEEEEecCCccCcHHHHHHHHHhcCC-eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCC
Q psy3345 677 ----SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGE-LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS 751 (787)
Q Consensus 677 ----~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~-I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~ 751 (787)
.......|++.|+..|.|..+||+.|.++|..-+. -++++|..-+ +.+ ...|.++|.+..+|..||..+||
T Consensus 394 p~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k--ser-SssGllEfe~~s~Aveal~~~NH- 469 (494)
T KOG1456|consen 394 PEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK--SER-SSSGLLEFENKSDAVEALMKLNH- 469 (494)
T ss_pred hhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc--ccc-cccceeeeehHHHHHHHHHHhcc-
Confidence 01111347899999999999999999999986654 3567775553 232 33589999999999999999997
Q ss_pred eeecCc------eEEEEEccc
Q psy3345 752 THLYGR------RLVLEWAEE 766 (787)
Q Consensus 752 ~~~~Gr------~l~v~~A~~ 766 (787)
..+.|. .|++.|+.+
T Consensus 470 ~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 470 YPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred ccccCCCCCCCeeeeeeeccc
Confidence 777762 566666654
No 39
>KOG0124|consensus
Probab=99.92 E-value=3.4e-24 Score=209.66 Aligned_cols=277 Identities=16% Similarity=0.248 Sum_probs=211.4
Q ss_pred ceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-------ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccC
Q psy3345 225 HTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-------FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKD 295 (787)
Q Consensus 225 ~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-------~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~ 295 (787)
|+|||+.|.+...|+.|+..|.+||++ +|.+. .+|+|||+|.-+|.|+-|+. +|+..|+||.|.|- .+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg--rPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG--RPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc--CCC
Confidence 789999999999999999999999998 67665 67999999999999999999 99999999999994 333
Q ss_pred CccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCC
Q psy3345 296 NSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD 375 (787)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~ 375 (787)
+++... .-.+........-.+|||..+.++.+++||+.+|+.||+|..|.+-+++.++
T Consensus 192 NmpQAQ----------------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 192 NMPQAQ----------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred CCcccc----------------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 333211 1111112222334589999999999999999999999999999999998888
Q ss_pred CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC-CC--CCCC-----------------------------
Q psy3345 376 KTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE-NE--GNVD----------------------------- 423 (787)
Q Consensus 376 ~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~-~~--~~~~----------------------------- 423 (787)
.++||+||+|.+......|+..||-..++|..|+|-.+.... .. ....
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~av 329 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAV 329 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCc
Confidence 899999999999999999999999999999999997665431 10 0000
Q ss_pred ----C-----------------------------------Cccccc-------cccc-----------cc----------
Q psy3345 424 ----G-----------------------------------KVHCCI-------SERK-----------LD---------- 436 (787)
Q Consensus 424 ----~-----------------------------------~~~~a~-------~~~~-----------~~---------- 436 (787)
+ .++.++ +-+. ++
T Consensus 330 lg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eel 409 (544)
T KOG0124|consen 330 LGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEEL 409 (544)
T ss_pred ccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhh
Confidence 0 000000 0000 00
Q ss_pred --------hh------------------hhhhhcCCCCEEEEeCC--CCCCC---HHHHHHhhccCCCeeEEEecCCC--
Q psy3345 437 --------AF------------------NQVVEARSKRIILVKNL--PYRTL---PTDLKALFEPFGDLGRVLVPPYG-- 483 (787)
Q Consensus 437 --------~~------------------~~~~~~~~~~~i~v~nl--p~~~t---~~~l~~~F~~~G~v~~v~i~~~~-- 483 (787)
.+ ..--....+++|.++|+ |.+++ +.+|.+.|.+||.|.+|.|...+
T Consensus 410 qpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~ 489 (544)
T KOG0124|consen 410 QPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQG 489 (544)
T ss_pred cccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccc
Confidence 00 00012335788999998 44443 56899999999999999987522
Q ss_pred c--------EEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccc
Q psy3345 484 I--------TGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAE 525 (787)
Q Consensus 484 ~--------~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~ 525 (787)
. --||+|....++.+|...|+|+.|.|+++..+.+.+..|..
T Consensus 490 e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 490 EEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDN 539 (544)
T ss_pred cccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccc
Confidence 1 37999999999999999999999999999998887776643
No 40
>KOG0131|consensus
Probab=99.92 E-value=1.8e-24 Score=192.82 Aligned_cols=173 Identities=23% Similarity=0.454 Sum_probs=154.3
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
.....+|||+||+..++++.|.++|-+.|+|.+++++++.- ++...|||||+|.+.++|..|++-||...|.|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv-----~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV-----TQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP 80 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh-----cccccceeEEEEechhhhHHHHHHHHHHHhcCce
Confidence 34568999999999999999999999999999999999876 5678999999999999999999999999999999
Q ss_pred EEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEE-EeccccCCCCCCceEEEEEe
Q psy3345 657 IELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFV-RLPKKMVGSGLHRGFGFVEF 735 (787)
Q Consensus 657 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v-~i~~~~~~~g~~~g~afV~F 735 (787)
|+|..+..... ....+.+|||+||.+++++.-|.+.|+.||.+.+. .|+++. .+|.++|||||.|
T Consensus 81 Irv~kas~~~~-------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~-~tg~~~~~g~i~~ 146 (203)
T KOG0131|consen 81 IRVNKASAHQK-------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP-DTGNPKGFGFINY 146 (203)
T ss_pred eEEEecccccc-------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccc-cCCCCCCCeEEec
Confidence 99998873222 12235789999999999999999999999988663 788885 6799999999999
Q ss_pred cCHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 736 ITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 736 ~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
.+.+.+.+|+.++| +..++.|++.|+||..++.
T Consensus 147 ~sfeasd~ai~s~n-gq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 147 ASFEASDAAIGSMN-GQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred hhHHHHHHHHHHhc-cchhcCCceEEEEEEecCC
Confidence 99999999999997 7999999999999986664
No 41
>KOG0147|consensus
Probab=99.91 E-value=6.5e-24 Score=220.67 Aligned_cols=275 Identities=23% Similarity=0.344 Sum_probs=215.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
.+.++||+--|+..++..+|.++|+.+|+|.+|.++.|..+++++|.|||+|.+.+....|+ .|.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 34578999999999999999999999999999999999999999999999999999999999 49999999999988764
Q ss_pred CCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCH
Q psy3345 414 KPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQK 493 (787)
Q Consensus 414 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~ 493 (787)
...
T Consensus 256 Eae----------------------------------------------------------------------------- 258 (549)
T KOG0147|consen 256 EAE----------------------------------------------------------------------------- 258 (549)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 310
Q ss_pred HHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCccccccccccc
Q psy3345 494 NQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDE 573 (787)
Q Consensus 494 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (787)
+.. .+.....+.|.-
T Consensus 259 ---knr-~a~~s~a~~~k~------------------------------------------------------------- 273 (549)
T KOG0147|consen 259 ---KNR-AANASPALQGKG------------------------------------------------------------- 273 (549)
T ss_pred ---HHH-HHhccccccccc-------------------------------------------------------------
Confidence 111 111111111100
Q ss_pred ccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy3345 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD 653 (787)
Q Consensus 574 ~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~ 653 (787)
...+...|||+||.++++++.|+.+|++||.|..|.+.++.. +|+++|||||+|.+.++|..|+..|||..|-
T Consensus 274 --~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~-----tG~skgfGfi~f~~~~~ar~a~e~lngfelA 346 (549)
T KOG0147|consen 274 --FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE-----TGRSKGFGFITFVNKEDARKALEQLNGFELA 346 (549)
T ss_pred --cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccc-----cccccCcceEEEecHHHHHHHHHHhccceec
Confidence 011223399999999999999999999999999999999875 7899999999999999999999999999999
Q ss_pred CeEEEEEecCccccchh-----------------------hhhh-----------------------------------h
Q psy3345 654 EHQIELKRSNRNLESEA-----------------------TTVK-----------------------------------R 675 (787)
Q Consensus 654 g~~l~v~~~~~~~~~~~-----------------------~~~~-----------------------------------~ 675 (787)
|+.|+|....-...... ...+ +
T Consensus 347 Gr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 426 (549)
T KOG0147|consen 347 GRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVR 426 (549)
T ss_pred CceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcC
Confidence 99999976532111100 0000 0
Q ss_pred ccccccC-------CCCCEEEEecC--CccCc--------HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCH
Q psy3345 676 KSSNVAK-------QTGSKILVRNI--PFQAK--------QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738 (787)
Q Consensus 676 ~~~~~~~-------~~~~~l~V~nL--p~~~t--------~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~ 738 (787)
.....+. .++.|+.++|+ |.+.| .+||.+.|++||.|..|.+-++ +-|+.||.|.+.
T Consensus 427 ~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n------s~g~VYvrc~s~ 500 (549)
T KOG0147|consen 427 VRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN------SAGCVYVRCPSA 500 (549)
T ss_pred ccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC------CCceEEEecCcH
Confidence 0011122 45677888888 44333 3679999999999988888665 459999999999
Q ss_pred HHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 739 NEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 739 ~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
+.|..|+.+|+ |++|.||-|...|-.
T Consensus 501 ~~A~~a~~alh-grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 501 EAAGTAVKALH-GRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHHHh-hhhhccceeEEEEee
Confidence 99999999995 899999999998864
No 42
>KOG4212|consensus
Probab=99.91 E-value=1.4e-22 Score=203.03 Aligned_cols=239 Identities=21% Similarity=0.214 Sum_probs=176.4
Q ss_pred ccce-EEEecCcccCCCccCCHHHHHHHhhcc-CceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 11 PRNH-ISLLDLDEVEFIYKITQEQLKAKFEEK-GTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 11 ~~~~-~~~~~l~~~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.+.| ++|.| +||++.=+||++||..- |+|+-|.|+.|..|++||+|.|.|+++|.+++|++.||+..+.||.|
T Consensus 42 ~r~R~vfItN-----Ipyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 42 ARDRSVFITN-----IPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred cccceEEEec-----CcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 3445 99999 99999999999999866 79999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCC
Q psy3345 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKD 168 (787)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (787)
.|.-... . ... .+.
T Consensus 117 ~vKEd~d---~-----------q~~----------------------------------------~~~------------ 130 (608)
T KOG4212|consen 117 VVKEDHD---E-----------QRD----------------------------------------QYG------------ 130 (608)
T ss_pred EEeccCc---h-----------hhh----------------------------------------hhh------------
Confidence 9953321 0 000 000
Q ss_pred CCccccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCC
Q psy3345 169 GEEKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL 248 (787)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~ 248 (787)
...|...++++.++-+.+-..-|..-|..-
T Consensus 131 --------------------------------------------------~~~r~g~~~f~~~~~~q~G~~~l~~~g~gg 160 (608)
T KOG4212|consen 131 --------------------------------------------------RIVRDGGGGFGGGGGVQGGNGGLNGGGGGG 160 (608)
T ss_pred --------------------------------------------------heeeccCcccccCcceecccccccccCCCC
Confidence 001223345666666666666666666555
Q ss_pred CCcceeec-------ccceEEEeecChHhHHHHHhcCC-cccCCeeEEEeecccCCccccCCCcCCCCchhhhhhhhccc
Q psy3345 249 PLASVRTT-------FLGMAYIGFKDEKNCNKALNKNK-SFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHW 320 (787)
Q Consensus 249 g~v~i~i~-------~~g~afV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (787)
|.+.--.+ +++..++.|.+.-.+..++.+-+ ....-+.++++
T Consensus 161 G~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f------------------------------ 210 (608)
T KOG4212|consen 161 GDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIF------------------------------ 210 (608)
T ss_pred ccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCC------------------------------
Confidence 54311111 55677888887777777776322 22222223321
Q ss_pred ccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q psy3345 321 KSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400 (787)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~ 400 (787)
..+...++||.||.+.+....|.+.|.-.|.|..|.+-.++. |.++|+|.++|.++-+|..|+..+++
T Consensus 211 -----------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 211 -----------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred -----------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 112233799999999999999999999999999999988865 78999999999999999999998887
Q ss_pred ceeCCeEEEEee
Q psy3345 401 TVFLGRMLHLIP 412 (787)
Q Consensus 401 ~~~~g~~l~v~~ 412 (787)
.-+..++..+..
T Consensus 279 ~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 279 QGLFDRRMTVRL 290 (608)
T ss_pred CCCccccceeec
Confidence 666666555544
No 43
>KOG4307|consensus
Probab=99.90 E-value=1.3e-22 Score=214.00 Aligned_cols=192 Identities=13% Similarity=0.040 Sum_probs=135.5
Q ss_pred CCccceEEEeCCCCCCCHHhHHHhhcCCCCcceeec-------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecc
Q psy3345 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTT-------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYS 293 (787)
Q Consensus 221 ~~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~-------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~ 293 (787)
..+.+++.++++++++.+.|+++||.+.-+..+.|. .+|.++|+|....++++|++++...+-.|++++-+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P-- 385 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGP-- 385 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecC--
Confidence 457799999999999999999999999866544433 47999999999999999999998888899999953
Q ss_pred cCCccccCCCcCCCC---chhhhhhhhccc--cc--ccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-
Q psy3345 294 KDNSAKYSGAADDNN---NASMENIKAKHW--KS--QEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAE- 365 (787)
Q Consensus 294 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~- 365 (787)
........+..... ..........+. .+ .............+.+|||..||..+++.++.++|.....|++
T Consensus 386 -~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 386 -PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred -CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 22211111110000 000000000000 00 0000011123345679999999999999999999998878888
Q ss_pred EEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 366 VILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 366 v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
|.|.+. -+++.++.|||.|..++++..|....+...++.|.|+|.....+
T Consensus 465 I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 465 IELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred eEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 555444 46888899999999999999998777777888899999877655
No 44
>KOG1365|consensus
Probab=99.90 E-value=1.4e-23 Score=206.96 Aligned_cols=284 Identities=14% Similarity=0.208 Sum_probs=204.8
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEE-EEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
...|+.|+ |||..+..+|..||.+...... +-|+.+-.|+..|+|.|.|.++|.-..|+++ |+..+++|+|+|
T Consensus 60 ~vvvRaRg-----lpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryiev 133 (508)
T KOG1365|consen 60 NVVVRARG-----LPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEV 133 (508)
T ss_pred ceEEEecC-----CCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceee
Confidence 34567777 9999999999999999954333 4555666899999999999999999999999 999999999999
Q ss_pred EEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCCC
Q psy3345 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGE 170 (787)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (787)
.-|.. . +|+....+.+..
T Consensus 134 Yka~g-------e---------------------------------------------~f~~iagg~s~e---------- 151 (508)
T KOG1365|consen 134 YKATG-------E---------------------------------------------EFLKIAGGTSNE---------- 151 (508)
T ss_pred eccCc-------h---------------------------------------------hheEecCCcccc----------
Confidence 98775 1 122222221100
Q ss_pred ccccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCC--
Q psy3345 171 EKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-- 248 (787)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~-- 248 (787)
. +. -....+.-.|+++|||+++++.||.+||.+-
T Consensus 152 --------~------------~~------------------------flsk~~qvivRmRGLPfdat~~dVv~FF~~~cp 187 (508)
T KOG1365|consen 152 --------A------------AP------------------------FLSKENQVIVRMRGLPFDATALDVVEFFGPPCP 187 (508)
T ss_pred --------C------------CC------------------------CCCcccceEEEecCCCCCcchHHHHHhcCCCCc
Confidence 0 00 0112345579999999999999999999743
Q ss_pred ---CCcceeec------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecccCCcccc----CCCcCCCCchhhhhh
Q psy3345 249 ---PLASVRTT------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY----SGAADDNNNASMENI 315 (787)
Q Consensus 249 ---g~v~i~i~------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~~~~~~~~----~~~~~~~~~~~~~~~ 315 (787)
|.++|.++ .+|.|||.|..+++|+.||.+|+..|+-|||++++-........ ...+-.+...+...
T Consensus 188 v~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~- 266 (508)
T KOG1365|consen 188 VTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLL- 266 (508)
T ss_pred ccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCC-
Confidence 44466666 67999999999999999999999999999999974211111100 00000000000000
Q ss_pred hhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee---EEEEecCCCCCCcceEEEEEEcCHHHHH
Q psy3345 316 KAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA---EVILPIDKETDKTKGFALVTFLMPEHAT 392 (787)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~---~v~i~~~~~~~~~~g~afV~F~~~~~A~ 392 (787)
. ..............||.+++|||.+|.++|.++|..|..-. -|+|+.+. -|++.|.|||+|.+.++|.
T Consensus 267 -----p--~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 267 -----P--GGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERAR 338 (508)
T ss_pred -----C--CCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHH
Confidence 0 00000111223366999999999999999999999986432 27888774 5999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 393 QAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 393 ~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
.|....+++.+.+|.|.|.++.-.
T Consensus 339 aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 339 AAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred HHHHHHHHhhcccceEEEeeccHH
Confidence 999988888888999999998754
No 45
>KOG0146|consensus
Probab=99.86 E-value=2.3e-21 Score=182.42 Aligned_cols=183 Identities=23% Similarity=0.370 Sum_probs=155.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCC--e
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNS-SLDE--H 655 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~-~l~g--~ 655 (787)
..+.|||+-|...-.+++++.+|..||.|.+|.+.+.++ +.++|++||.|.++.+|+.||..|||. .+-| .
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d------g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD------GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC------CCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 568999999999999999999999999999999999877 789999999999999999999999995 4545 6
Q ss_pred EEEEEecCccccchhhh---------------------------------------------------------------
Q psy3345 656 QIELKRSNRNLESEATT--------------------------------------------------------------- 672 (787)
Q Consensus 656 ~l~v~~~~~~~~~~~~~--------------------------------------------------------------- 672 (787)
.|.|++++...+.....
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 89999987432210000
Q ss_pred -----------h---h----------------------------------------------------------------
Q psy3345 673 -----------V---K---------------------------------------------------------------- 674 (787)
Q Consensus 673 -----------~---~---------------------------------------------------------------- 674 (787)
+ .
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence 0 0
Q ss_pred -----------------------hccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEE
Q psy3345 675 -----------------------RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 731 (787)
Q Consensus 675 -----------------------~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~a 731 (787)
-.........+|+|||.+||.+..+.+|.++|-.||.|++.++..|. -++++++||
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDR-ATNQSKCFG 330 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDR-ATNQSKCFG 330 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehh-cccccccee
Confidence 00000114478999999999999999999999999999999998886 789999999
Q ss_pred EEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 732 FVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 732 fV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
||.|+++-+|+.||++|| |..++-++|+|.+.+|++.
T Consensus 331 FVSfDNp~SaQaAIqAMN-GFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 331 FVSFDNPASAQAAIQAMN-GFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eEecCCchhHHHHHHHhc-chhhhhhhhhhhhcCcccc
Confidence 999999999999999997 7999999999999998874
No 46
>KOG0131|consensus
Probab=99.84 E-value=1.2e-20 Score=168.43 Aligned_cols=165 Identities=20% Similarity=0.279 Sum_probs=146.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEec
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 519 (787)
...+|+|.||+..++++-|+++|-+.|+|..+.+|++ .|+|||+|.++++|.-|++-|+...++|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4688999999999999999999999999999999973 4799999999999999999999999999999999885
Q ss_pred CccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHH
Q psy3345 520 EGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRR 599 (787)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~ 599 (787)
.. ......+.+|||+||.+.+++..|.+
T Consensus 88 ~~----------------------------------------------------~~nl~vganlfvgNLd~~vDe~~L~d 115 (203)
T KOG0131|consen 88 AH----------------------------------------------------QKNLDVGANLFVGNLDPEVDEKLLYD 115 (203)
T ss_pred cc----------------------------------------------------cccccccccccccccCcchhHHHHHH
Confidence 22 11123357999999999999999999
Q ss_pred HHhhcCCeEE-EEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCcccc
Q psy3345 600 HFKKCGPIAS-VTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLE 667 (787)
Q Consensus 600 ~F~~~G~v~~-v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~ 667 (787)
.|+.||.+.+ -+++++++ ++.++|||||.|.+.+.+.+|+..|||..+..+++.|.++.++..
T Consensus 116 tFsafG~l~~~P~i~rd~~-----tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 116 TFSAFGVLISPPKIMRDPD-----TGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHhccccccCCccccccc-----CCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 9999998755 56777766 778999999999999999999999999999999999999876543
No 47
>KOG1456|consensus
Probab=99.83 E-value=1.2e-17 Score=164.79 Aligned_cols=380 Identities=17% Similarity=0.163 Sum_probs=256.1
Q ss_pred cCCCccceEEEeCCCCCCCHHhHHHhhcCCCCcce-eec-ccceEEEeecChHhHHHHHhc---CCcccCCeeEEEeecc
Q psy3345 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASV-RTT-FLGMAYIGFKDEKNCNKALNK---NKSFWKGKQLNIYKYS 293 (787)
Q Consensus 219 ~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i-~i~-~~g~afV~F~~~~~A~~Al~~---~~~~l~g~~i~v~~~~ 293 (787)
.....+-+|+|++|-..++|.||.+.++.+|.+.. ... .+..|.|+|.+.+-|..++.. +..++.|+.-.+-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N--- 102 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN--- 102 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcc---
Confidence 34455678999999999999999999999999843 333 778999999999999999884 3455555443331
Q ss_pred cCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEE--EcCCCCCCCHHHHHHHHHhcCCeeEEEEecC
Q psy3345 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIF--VRNLSYTVTEDDLTKLFEKYGPLAEVILPID 371 (787)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 371 (787)
.+......... .+...++..|. |-|--|.+|-+-|..+....|+|..|.|.+.
T Consensus 103 ---------------yStsq~i~R~g----------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk 157 (494)
T KOG1456|consen 103 ---------------YSTSQCIERPG----------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK 157 (494)
T ss_pred ---------------cchhhhhccCC----------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec
Confidence 00011110000 11122233344 4565678999999999999999999988753
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEeeCCCCCC------CCCCC------------CCc-----
Q psy3345 372 KETDKTKGFALVTFLMPEHATQAYQHLDGTVFLG--RMLHLIPGKPKEN------EGNVD------------GKV----- 426 (787)
Q Consensus 372 ~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~~------~~~~~------------~~~----- 426 (787)
+| =.|.|+|.+.+.|++|...|||..|.. -+|+|.++++... .+..+ +..
T Consensus 158 --ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~ 232 (494)
T KOG1456|consen 158 --NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQ 232 (494)
T ss_pred --cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccc
Confidence 33 269999999999999999999987743 5777788776410 00000 000
Q ss_pred ----------------------------------cccccccccchhhhhhhcCCCCEEEEeCCCCC-CCHHHHHHhhccC
Q psy3345 427 ----------------------------------HCCISERKLDAFNQVVEARSKRIILVKNLPYR-TLPTDLKALFEPF 471 (787)
Q Consensus 427 ----------------------------------~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~-~t~~~l~~~F~~~ 471 (787)
|...+.........+....+..++.|.+|... ++-+.|.++|-.|
T Consensus 233 ~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY 312 (494)
T KOG1456|consen 233 RQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY 312 (494)
T ss_pred cCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc
Confidence 00000000001112234556889999999865 6889999999999
Q ss_pred CCeeEEEecCCC-cEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhh
Q psy3345 472 GDLGRVLVPPYG-ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKK 550 (787)
Q Consensus 472 G~v~~v~i~~~~-~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (787)
|.|.+|.+.+.+ +.|.|++.++.+.++|+..||+..+.|.+|.+.++.+.....- .. -..+.+.
T Consensus 313 GNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~-~p----------flLpDgS---- 377 (494)
T KOG1456|consen 313 GNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPV-QP----------FLLPDGS---- 377 (494)
T ss_pred CceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccC-Cc----------eecCCCC----
Confidence 999999998854 7999999999999999999999999999999988866632221 00 0011000
Q ss_pred cccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCCCCCCCCcccE
Q psy3345 551 ENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGP-IASVTVARKKDPKSPGQFLSMGY 629 (787)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~~~~~s~G~ 629 (787)
....+...+.........+...+.-..+.++|..-|-|..+|++.|.++|...+. -.++++..-+. .-..-
T Consensus 378 -pSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ks-------erSss 449 (494)
T KOG1456|consen 378 -PSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKS-------ERSSS 449 (494)
T ss_pred -cchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccc-------ccccc
Confidence 0111111111111111111122344567889999999999999999999987664 45666654332 23346
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCC
Q psy3345 630 GFVQFYTRESLNQALKVLQNSSLDE 654 (787)
Q Consensus 630 afV~F~~~e~A~~A~~~lng~~l~g 654 (787)
|.++|.+.++|..|+..+|...+.+
T Consensus 450 GllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 450 GLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred ceeeeehHHHHHHHHHHhccccccC
Confidence 8999999999999999999988865
No 48
>KOG0109|consensus
Probab=99.82 E-value=3e-20 Score=177.65 Aligned_cols=146 Identities=24% Similarity=0.455 Sum_probs=136.7
Q ss_pred CeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Q psy3345 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELK 660 (787)
Q Consensus 581 ~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~ 660 (787)
..|||+|||..+++.+|+.+|++||.|..|.|++ -||||...+...|..|+..|||..|+|..|.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------------NYgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-------------ccceEEeecccccHHHHhhcccceecceEEEEE
Confidence 4699999999999999999999999999999996 389999999999999999999999999999998
Q ss_pred ecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHH
Q psy3345 661 RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740 (787)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~ 740 (787)
-++.+.. ..++|+|.||.+..+.++|+..|++||.|..++|.++ |+||.|.-.++
T Consensus 70 aSksKsk----------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---------y~fvh~d~~ed 124 (346)
T KOG0109|consen 70 ASKSKSK----------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---------YAFVHFDRAED 124 (346)
T ss_pred eccccCC----------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc---------eeEEEEeeccc
Confidence 8775533 6789999999999999999999999999999999877 79999999999
Q ss_pred HHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 741 AKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 741 A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
|..|+..|+ ++.|.|++|+|....
T Consensus 125 a~~air~l~-~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 125 AVEAIRGLD-NTEFQGKRMHVQLST 148 (346)
T ss_pred hHHHHhccc-ccccccceeeeeeec
Confidence 999999998 599999999999875
No 49
>KOG0109|consensus
Probab=99.79 E-value=3.4e-19 Score=170.45 Aligned_cols=150 Identities=23% Similarity=0.411 Sum_probs=138.2
Q ss_pred CEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccc
Q psy3345 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAK 527 (787)
Q Consensus 448 ~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 527 (787)
..+||.|||..+++.+|+.+|++||.|..|.|.+ ++|||...+...|..|+..|+|..+.|..|.|+-+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------ 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------ 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--ccceEEeecccccHHHHhhcccceecceEEEEEecccc------
Confidence 3589999999999999999999999999999984 58999999999999999999999999999999977444
Q ss_pred cccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCe
Q psy3345 528 EKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPI 607 (787)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v 607 (787)
....+.|+|+||.+.++..+|+..|++||+|
T Consensus 75 -------------------------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpv 105 (346)
T KOG0109|consen 75 -------------------------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPV 105 (346)
T ss_pred -------------------------------------------------CCCccccccCCCCccccCHHHhhhhcccCCc
Confidence 2346789999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCcccc
Q psy3345 608 ASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLE 667 (787)
Q Consensus 608 ~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~ 667 (787)
..|.|.+ +|+||.|.-.++|..|++.|+|..++|+++.|+++.....
T Consensus 106 iecdivk-------------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 106 IECDIVK-------------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred eeeeeec-------------ceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 9999986 6999999999999999999999999999999999876544
No 50
>KOG0146|consensus
Probab=99.78 E-value=1.4e-18 Score=163.72 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=80.6
Q ss_pred ccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy3345 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD 653 (787)
Q Consensus 574 ~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~ 653 (787)
.....++|+|||.+||.+..+.+|...|-+||.|.+.++..|+. +..|++||||.|.++.+|+.||.+|||+.|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA-----TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA-----TNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc-----cccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 34567789999999999999999999999999999999999987 7899999999999999999999999999999
Q ss_pred CeEEEEEecCcc
Q psy3345 654 EHQIELKRSNRN 665 (787)
Q Consensus 654 g~~l~v~~~~~~ 665 (787)
-++|+|.+..++
T Consensus 354 MKRLKVQLKRPk 365 (371)
T KOG0146|consen 354 MKRLKVQLKRPK 365 (371)
T ss_pred hhhhhhhhcCcc
Confidence 999999886544
No 51
>KOG4307|consensus
Probab=99.75 E-value=4.9e-17 Score=172.22 Aligned_cols=531 Identities=12% Similarity=0.014 Sum_probs=285.0
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCc-ceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~-~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
-.+.+.+ +++++++.|+++||.+. .|..++|..++-+.+ +|-++|.|....++++|+++ |.+.+-.|+|+|.
T Consensus 312 ~y~~~~g-----m~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 312 YYNNYKG-----MEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTG 384 (944)
T ss_pred heeeecc-----cccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhcceeec
Confidence 3466777 99999999999999998 578899999885554 99999999999999999999 9999999999998
Q ss_pred EccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCCCc
Q psy3345 92 KCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGEE 171 (787)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (787)
++.. +.|......- +. ..+..-+ ....+..+-
T Consensus 385 P~g~-------~~~~~a~~~~-~~--------------------------------------~~~~~~~-~~hg~p~~~- 416 (944)
T KOG4307|consen 385 PPGN-------LGRNGAPPFQ-AG--------------------------------------VPPPVIQ-NNHGRPIAP- 416 (944)
T ss_pred CCCc-------cccccCcccc-cc--------------------------------------CCCCccc-ccCCCCCCC-
Confidence 8876 3342211100 00 0000000 000000000
Q ss_pred cccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCCCCc
Q psy3345 172 KEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA 251 (787)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v 251 (787)
.++.. ...+. .+.......+|||..||..+++.++.++|.....|
T Consensus 417 ---------------------------pr~~~------~~gq~--vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~V 461 (944)
T KOG4307|consen 417 ---------------------------PRAMV------RPGQN--VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAV 461 (944)
T ss_pred ---------------------------ccccc------CCCCC--CCCCCCccceEEeccCCccccccchhhhhhhhhhh
Confidence 00000 00000 11334556899999999999999999999998766
Q ss_pred -c-eeec------ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccCCccccCCCcCCCCchhhhhhhhccccc
Q psy3345 252 -S-VRTT------FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKS 322 (787)
Q Consensus 252 -~-i~i~------~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (787)
+ |.|. .++.|||.|..++++.+|+. .++.+++.+.|.|..+++..+...... +....-...
T Consensus 462 ed~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~~ek~~--------~~~~~lq~~-- 531 (944)
T KOG4307|consen 462 EDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMMMEKNG--------EQGIKLQQS-- 531 (944)
T ss_pred hheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHHHHHhH--------HHHHHHhhh--
Confidence 4 5555 44799999999988888888 889999999999976555444110000 000000000
Q ss_pred ccchhhhhc--c----cCCCCeEEEcCCC-CCCCHHHHHHHHHhcCCeeE---EEEecCCCCCCcceEEEEEEcCHHHHH
Q psy3345 323 QEDSVQFAE--D----IAESGRIFVRNLS-YTVTEDDLTKLFEKYGPLAE---VILPIDKETDKTKGFALVTFLMPEHAT 392 (787)
Q Consensus 323 ~~~~~~~~~--~----~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~---v~i~~~~~~~~~~g~afV~F~~~~~A~ 392 (787)
..++.+... . .....+-.+.+.+ ++.+....+.... +.+.+ ..+..| ..+.+.+-+||.|.+...+.
T Consensus 532 ~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~--~~~~~~n~~p~~~d-N~~~~~~~~~v~~~n~p~~r 608 (944)
T KOG4307|consen 532 DKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENT--SPIRSPNRSPLRRD-NRDRSRSRSPVRRRNSPRRR 608 (944)
T ss_pred hhHHHHHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhc--CCccCccccccccc-cCCcccccCccccCCCcccc
Confidence 000000000 0 0011223344555 5666655544333 33333 334444 34778889999999888777
Q ss_pred HHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCC
Q psy3345 393 QAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG 472 (787)
Q Consensus 393 ~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G 472 (787)
.-.. ++...+.++.....--...+...+.++.+...-.- - ......+.-.-+.+..|+- +..-+|..+|. |
T Consensus 609 ~~~~-~~~~~vnn~pF~m~~~~~~~~~sekn~Pa~~~~~~---~--~gv~~~p~v~~~~~~~l~~-~r~~~~g~l~t--g 679 (944)
T KOG4307|consen 609 EEHT-RWCVQVNNVPFRMKDEELLEWFSEKNRPAKLTRTF---Y--DGVASDPWVAEFSSESLMK-RRSFGIGTLCT--G 679 (944)
T ss_pred chhh-hhhhcccCcceeecchhhhhhhcccCCcccccccc---c--CCCCCCccccccccccccc-ccCCCcccccc--C
Confidence 6653 44445555553332111101100000000000000 0 0000000000111111111 00111222222 1
Q ss_pred CeeEEE-e-------cCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccc---------cccccccc
Q psy3345 473 DLGRVL-V-------PPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAK---------EKSKGKEK 535 (787)
Q Consensus 473 ~v~~v~-i-------~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~---------~~~~~~~~ 535 (787)
.-.++. + ...-+..+++|.+....+.|+.....+.+.+..+.+--+...-..... ........
T Consensus 680 ~~lr~~~i~~~~~~~~~~~g~~~~e~~~~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs~~~~p~~p~p~~~gg~nG~~~ 759 (944)
T KOG4307|consen 680 RTLRLRYIDNAKADEILKIGDVYGEGKRQMNEEAALQHEVAEKANPPSFFNAPAATRGSGPMPPLNPAPLPSGGQNGMNV 759 (944)
T ss_pred cccccchhhhhhhccccccccceeccCCccchhHHHHHHhhhhccCCCcccccccccccCCCCCCCCCCCCCCccCCCCC
Confidence 000000 0 112346789999999999999998888888777765433211000000 00000000
Q ss_pred cccc----------ccc-------------c---cchhhhhc---cccc--cc----ccCCC------------------
Q psy3345 536 EKNE----------EEG-------------E---EGEEEKKE---NTAE--ED----NQQGV------------------ 562 (787)
Q Consensus 536 ~~~~----------~~~-------------~---~~~~~~~~---~~~~--~~----~~~~~------------------ 562 (787)
+... ... + .+...... .... .+ ..++.
T Consensus 760 p~pn~~NdGapg~g~~vp~~f~~gp~~~~gp~g~gggP~~~qngP~sl~~~p~~~f~sn~p~~~gf~pg~rggpp~~g~g 839 (944)
T KOG4307|consen 760 PPPNGFNDGAPGRGGFVPRGFSQGPGMGRGPHGGGGGPNFYQNGPNSLNNGPQGQFRSNQPNDGGFRPGFRGGPPGRGGG 839 (944)
T ss_pred CCCCCCCCCCCCcCCcCCccccCCCCCCCCCCCCCCCccccccCCcccCCCCccccCCCCCCcCCcCCccCCCCCCCCCC
Confidence 0000 000 0 00000000 0000 00 00000
Q ss_pred cc-------ccccccc--ccccCCCCC-CeEEecCCCCCCCHHHHHHHHhhcCCeEE-EEEeecCCCCCCCCCCcccEEE
Q psy3345 563 PE-------VEENVEE--DEEREPEPD-TTLYIKNLNFNSTEDSIRRHFKKCGPIAS-VTVARKKDPKSPGQFLSMGYGF 631 (787)
Q Consensus 563 ~~-------~~~~~~~--~~~~~~~~~-~~l~V~NLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~~~~~s~G~af 631 (787)
+. .....-. -......++ +.|.+.|+|++++.++|.++|..|-.+-. +.+.++. .|..+|-|.
T Consensus 840 pg~~~g~~p~~~~~P~~~~~~~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd------~G~pTGe~m 913 (944)
T KOG4307|consen 840 PGGFQGGSPGDDSQPSQELMELIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND------DGVPTGECM 913 (944)
T ss_pred CCCCCCCCCCCCCCChHHHHHhcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecC------CCCccccee
Confidence 00 0000000 001122233 48999999999999999999999987644 4444433 488999999
Q ss_pred EEeCCHHHHHHHHHHhCCCccCCeEEEEEe
Q psy3345 632 VQFYTRESLNQALKVLQNSSLDEHQIELKR 661 (787)
Q Consensus 632 V~F~~~e~A~~A~~~lng~~l~g~~l~v~~ 661 (787)
|-|.+.++|.+|...|+++.|..+.+.+.+
T Consensus 914 vAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 914 VAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 999999999999999999999999998865
No 52
>KOG1365|consensus
Probab=99.74 E-value=2e-18 Score=170.74 Aligned_cols=274 Identities=19% Similarity=0.221 Sum_probs=191.0
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCc--ceeec------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecc
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLA--SVRTT------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYS 293 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v--~i~i~------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~ 293 (787)
.++..|+.++||+..+..+|..||+...+. .+-|+ ..|+|.|.|.+++.-..|+++|+..+++++|+|++..
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 457789999999999999999999998655 23333 5689999999999999999999999999999998533
Q ss_pred cCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEe
Q psy3345 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY----GPLAEVILP 369 (787)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~ 369 (787)
..+....... .......+. .....-.|.+++||+++|+.++.++|.+- |....|.++
T Consensus 138 ge~f~~iagg---------~s~e~~~fl----------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 138 GEEFLKIAGG---------TSNEAAPFL----------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred chhheEecCC---------ccccCCCCC----------CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 3333321110 000000000 01112358899999999999999999632 234455555
Q ss_pred cCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCC---------CCccccccccccchhhh
Q psy3345 370 IDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD---------GKVHCCISERKLDAFNQ 440 (787)
Q Consensus 370 ~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~ 440 (787)
.. ..|+.+|-|||.|..+++|+.|+. .|...|+-|+|.+..+...+.....+ +.....+... ....
T Consensus 199 ~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~---p~~~ 273 (508)
T KOG1365|consen 199 TR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGG---PARL 273 (508)
T ss_pred EC-CCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCC---cccc
Confidence 54 359999999999999999999997 57778888998887665432110000 0000000000 0011
Q ss_pred hhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCee---EEEe--cC---CCcEEEEEeCCHHHHHHHHHHhcCCeeCCee
Q psy3345 441 VVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG---RVLV--PP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVP 512 (787)
Q Consensus 441 ~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~---~v~i--~~---~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~ 512 (787)
......+.+|.+++||+.++.++|.++|..|..-. -|.+ .. ..|.|||+|.+++.|..|..+.+.+...+|.
T Consensus 274 ~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 274 VPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 22344588999999999999999999999887532 1333 32 2257999999999999999998888777887
Q ss_pred EEEEEec
Q psy3345 513 LYLEWAP 519 (787)
Q Consensus 513 l~v~~~~ 519 (787)
|.|-.+.
T Consensus 354 iEvfp~S 360 (508)
T KOG1365|consen 354 IEVFPCS 360 (508)
T ss_pred EEEeecc
Confidence 7776553
No 53
>KOG0120|consensus
Probab=99.74 E-value=1.6e-17 Score=176.54 Aligned_cols=292 Identities=19% Similarity=0.280 Sum_probs=211.2
Q ss_pred cCCCccceEEEeCCCCCCCHHhHHHhhcCC-----------CC--cceeec-ccceEEEeecChHhHHHHHhcCCcccCC
Q psy3345 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-----------PL--ASVRTT-FLGMAYIGFKDEKNCNKALNKNKSFWKG 284 (787)
Q Consensus 219 ~~~~~~~~v~v~nLp~~~te~di~~~F~~~-----------g~--v~i~i~-~~g~afV~F~~~~~A~~Al~~~~~~l~g 284 (787)
...+..+.++|.++|+.++++....||... |. +.+.+. .+++||++|.+.++|..|+.+++..+.|
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g 249 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEG 249 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCC
Confidence 456788999999999999999999999875 11 133333 6789999999999999999999999999
Q ss_pred eeEEEeecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee
Q psy3345 285 KQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA 364 (787)
Q Consensus 285 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 364 (787)
+.+.+.. +......+....... ....-...|. ..........+||++||...++.++.++...||++.
T Consensus 250 ~~~~~~r--~~d~~~~p~~~~~~~---~~~~~~~~~~-------~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk 317 (500)
T KOG0120|consen 250 RPLKIRR--PHDYQPVPGITLSPS---QLGKVGLLPA-------STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLK 317 (500)
T ss_pred CCceecc--cccccCCccchhhhc---cccccCCccc-------ccCcccccchhhhccCcCccCHHHHHHHHHhcccch
Confidence 9998852 111111000000000 0000000111 112334566899999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCC--ccccccccccchhhhhh
Q psy3345 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGK--VHCCISERKLDAFNQVV 442 (787)
Q Consensus 365 ~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~ 442 (787)
...++.+..+|.++||||.+|.++.....|+..|||..++++.|.|..+-........... ... . ..+.......
T Consensus 318 ~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~-~--~~i~~~~~q~ 394 (500)
T KOG0120|consen 318 AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQ-V--PGIPLLMTQM 394 (500)
T ss_pred hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccc-c--ccchhhhccc
Confidence 9999999999999999999999999999999999999999999999987765211110000 000 0 0011111122
Q ss_pred hcCCCCEEEEeCCC--CCC--------CHHHHHHhhccCCCeeEEEecCC---------CcEEEEEeCCHHHHHHHHHHh
Q psy3345 443 EARSKRIILVKNLP--YRT--------LPTDLKALFEPFGDLGRVLVPPY---------GITGLVEFLQKNQAKAAFNSL 503 (787)
Q Consensus 443 ~~~~~~~i~v~nlp--~~~--------t~~~l~~~F~~~G~v~~v~i~~~---------~~~a~V~F~~~~~A~~A~~~l 503 (787)
...++.++.+.|+= .+. -.++++..|++||.|.+|.++.. -|..||+|.+.+++++|.+.|
T Consensus 395 ~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L 474 (500)
T KOG0120|consen 395 AGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL 474 (500)
T ss_pred CCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc
Confidence 34556666666652 111 12567788999999999999864 246999999999999999999
Q ss_pred cCCeeCCeeEEEEEecCccccc
Q psy3345 504 AYTKFKEVPLYLEWAPEGVFAE 525 (787)
Q Consensus 504 ~~~~~~g~~l~v~~~~~~~~~~ 525 (787)
+|+.|.+|+|...|.++..|..
T Consensus 475 ~GrKF~nRtVvtsYydeDkY~~ 496 (500)
T KOG0120|consen 475 TGRKFANRTVVASYYDEDKYHA 496 (500)
T ss_pred cCceeCCcEEEEEecCHHHhhc
Confidence 9999999999999998775543
No 54
>KOG4205|consensus
Probab=99.73 E-value=9.1e-18 Score=170.46 Aligned_cols=176 Identities=24% Similarity=0.419 Sum_probs=153.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~ 658 (787)
..+.|||++|+.+++++.|+++|++||.|..|.+++++. +++++||+||+|++++...+++. .-.+.|+|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~-----t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS-----TGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC-----CCCcccccceecCCCcchheeec-ccccccCCcccc
Confidence 568999999999999999999999999999999999987 58999999999999999988887 446789999999
Q ss_pred EEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCH
Q psy3345 659 LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738 (787)
Q Consensus 659 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~ 738 (787)
++.+.+....... .......+|||.+||..+++.+++++|.+||.|..+-++.+. .+.+++|||||.|.+.
T Consensus 79 ~k~av~r~~~~~~--------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~-~~~~~rgFgfv~~~~e 149 (311)
T KOG4205|consen 79 PKRAVSREDQTKV--------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK-TTSRPRGFGFVTFDSE 149 (311)
T ss_pred ceeccCccccccc--------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc-cccccccceeeEeccc
Confidence 9887654431110 111256789999999999999999999999999999999986 7899999999999999
Q ss_pred HHHHHHHHHhcCCeeecCceEEEEEccccccHH
Q psy3345 739 NEAKRAMKALCQSTHLYGRRLVLEWAEEADNVE 771 (787)
Q Consensus 739 ~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~~ 771 (787)
+...+++..- .+.|+|+.+.|.-|.|++...
T Consensus 150 ~sVdkv~~~~--f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 150 DSVDKVTLQK--FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cccceecccc--eeeecCceeeEeeccchhhcc
Confidence 9999998864 689999999999999998754
No 55
>KOG0120|consensus
Probab=99.72 E-value=9.5e-17 Score=170.62 Aligned_cols=289 Identities=18% Similarity=0.292 Sum_probs=211.9
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHhhccC-----------C-CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC
Q psy3345 443 EARSKRIILVKNLPYRTLPTDLKALFEPF-----------G-DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE 510 (787)
Q Consensus 443 ~~~~~~~i~v~nlp~~~t~~~l~~~F~~~-----------G-~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g 510 (787)
.......++|.++|+.++++.+..+|..- | .+..+.+....++|+++|.+.++|..|+. +++..+.|
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 34456789999999999999999888753 3 26788888889999999999999999976 78888889
Q ss_pred eeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCC
Q psy3345 511 VPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNF 590 (787)
Q Consensus 511 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~ 590 (787)
.++.+..-.............. + ...................++|+|||.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~-------------~-----------------~~~~~~~~~~t~~~~~~~ki~v~~lp~ 299 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPS-------------Q-----------------LGKVGLLPASTDVPDSPNKIFVGGLPL 299 (500)
T ss_pred CCceecccccccCCccchhhhc-------------c-----------------ccccCCcccccCcccccchhhhccCcC
Confidence 8887754322210000000000 0 000000111122344567899999999
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchh
Q psy3345 591 NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEA 670 (787)
Q Consensus 591 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~ 670 (787)
..++.++.++...||.+...++..+.. ++.++||||.+|.++.-...|+..|||..+++..|.|+.+........
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f~lv~d~~-----~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~ 374 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAFRLVKDSA-----TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNAN 374 (500)
T ss_pred ccCHHHHHHHHHhcccchhheeecccc-----cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhcc
Confidence 999999999999999999999999876 588999999999999999999999999999999999998876544211
Q ss_pred hhhh----------hccccccCCCCCEEEEecC--CccCc--------HHHHHHHHHhcCCeeEEEecccc--CCCCCCc
Q psy3345 671 TTVK----------RKSSNVAKQTGSKILVRNI--PFQAK--------QSEVEELFKAFGELKFVRLPKKM--VGSGLHR 728 (787)
Q Consensus 671 ~~~~----------~~~~~~~~~~~~~l~V~nL--p~~~t--------~~dL~~~F~~~G~I~~v~i~~~~--~~~g~~~ 728 (787)
.... .........+...|.+.|+ |.+.. -++++.-|++||.|.+|.|++.. .......
T Consensus 375 ~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~ 454 (500)
T KOG0120|consen 375 VNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGT 454 (500)
T ss_pred ccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCc
Confidence 1100 0001222345566666666 22222 24588888899999999999883 1123345
Q ss_pred eEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 729 GFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 729 g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
|-.||+|.+.++|++|+.+|+ |+.|.||.++.+|-.+++
T Consensus 455 GkVFVefas~ed~qrA~~~L~-GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 455 GKVFVEFADTEDSQRAMEELT-GRKFANRTVVASYYDEDK 493 (500)
T ss_pred ccEEEEecChHHHHHHHHHcc-CceeCCcEEEEEecCHHH
Confidence 678999999999999999996 899999999999987654
No 56
>KOG0105|consensus
Probab=99.70 E-value=3.6e-16 Score=139.76 Aligned_cols=156 Identities=17% Similarity=0.331 Sum_probs=129.7
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~ 658 (787)
..+.|||+|||.++-+.+|.++|.+||.|..+.+...+. .-+||||+|.++-+|..|+..-+|..++|+.|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--------~ppfafVeFEd~RDAeDAiygRdGYdydg~rLR 76 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLR 76 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--------CCCeeEEEecCccchhhhhhcccccccCcceEE
Confidence 468999999999999999999999999999999875432 457999999999999999999999999999999
Q ss_pred EEecCccccchhhh------------hhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCC
Q psy3345 659 LKRSNRNLESEATT------------VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 726 (787)
Q Consensus 659 v~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~ 726 (787)
|.++.......... ......+.......+|.|.+||+..+++||++.+.+-|.|....+.++
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------ 150 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------
Confidence 99987553210000 000011122335689999999999999999999999999999988887
Q ss_pred CceEEEEEecCHHHHHHHHHHhcC
Q psy3345 727 HRGFGFVEFITKNEAKRAMKALCQ 750 (787)
Q Consensus 727 ~~g~afV~F~~~~~A~~Al~~l~~ 750 (787)
|.+.|+|...++.+=|+..|..
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhcc
Confidence 5899999999999999999974
No 57
>KOG0105|consensus
Probab=99.69 E-value=1.3e-15 Score=136.13 Aligned_cols=178 Identities=28% Similarity=0.312 Sum_probs=139.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
...++|||+|||.++.+.+|.++|.+||.|.+|.+..- ....+||||+|.++.+|..|+..-+|..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35679999999999999999999999999999988432 335679999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC----CccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEE
Q psy3345 414 KPKENEGNVDG----KVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVE 489 (787)
Q Consensus 414 ~~~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~ 489 (787)
..........+ ..+...+.. .-..++...+...|+|.+||.+.+.+||++++.+-|.|+...+.+++ ++.|+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~g---g~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-~GvV~ 156 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGG---GRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-VGVVE 156 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCC---cccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-ceeee
Confidence 76521111111 001000000 00123355678899999999999999999999999999998888776 89999
Q ss_pred eCCHHHHHHHHHHhcCCeeC--CeeEEEEEe
Q psy3345 490 FLQKNQAKAAFNSLAYTKFK--EVPLYLEWA 518 (787)
Q Consensus 490 F~~~~~A~~A~~~l~~~~~~--g~~l~v~~~ 518 (787)
|...++.+-|+.+|....+. |-..++...
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 99999999999999887765 555555544
No 58
>KOG4206|consensus
Probab=99.68 E-value=1.1e-15 Score=143.23 Aligned_cols=172 Identities=24% Similarity=0.368 Sum_probs=143.0
Q ss_pred CCeEEecCCCCCCCHHHHHH----HHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q psy3345 580 DTTLYIKNLNFNSTEDSIRR----HFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEH 655 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~ 655 (787)
..+|||.||+..+..++|+. +|++||.|..|...+. ...+|-|||.|.+.+.|..|+..|+|..+.|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--------~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--------PKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--------CCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 34999999999999999888 9999999999998763 45899999999999999999999999999999
Q ss_pred EEEEEecCccccchhhhh----------------------hh---------ccc-----cccCCCCCEEEEecCCccCcH
Q psy3345 656 QIELKRSNRNLESEATTV----------------------KR---------KSS-----NVAKQTGSKILVRNIPFQAKQ 699 (787)
Q Consensus 656 ~l~v~~~~~~~~~~~~~~----------------------~~---------~~~-----~~~~~~~~~l~V~nLp~~~t~ 699 (787)
.+++.+++.+...-.... .. ... .....+...+++.|||.+++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 999999986543211100 00 000 112346788999999999999
Q ss_pred HHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 700 ~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
+.|..+|..|..-..++++.. ..+.|||+|.+...|.-|.+.+.+.++-....|.+.||+
T Consensus 161 e~l~~lf~qf~g~keir~i~~------~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPP------RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHhhCcccceeEeccC------CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999876 368999999999999999999986555558999999986
No 59
>KOG4205|consensus
Probab=99.68 E-value=1.3e-16 Score=162.13 Aligned_cols=173 Identities=24% Similarity=0.394 Sum_probs=150.7
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.+-+++|-+ |+|.+|++.|+++|+.||+|.+|.+++++ .|++|||+||+|++++...++|.. ..+.|+||.|+
T Consensus 5 ~~~KlfiGg-----isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGG-----LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVE 78 (311)
T ss_pred CCcceeecC-----cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCcccc
Confidence 567899999 99999999999999999999999999999 799999999999999999999987 78899999999
Q ss_pred EEEccCCCCCCCCCCcccCCCCChhHHhhcccCCCCCCCCCCcCCCCCCCCCCCCcchHHHHHHhCCCcccCccCCCCCC
Q psy3345 90 VEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDG 169 (787)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (787)
+..|.+..+...+
T Consensus 79 ~k~av~r~~~~~~------------------------------------------------------------------- 91 (311)
T KOG4205|consen 79 PKRAVSREDQTKV------------------------------------------------------------------- 91 (311)
T ss_pred ceeccCccccccc-------------------------------------------------------------------
Confidence 9888760000000
Q ss_pred CccccccccccccccccCCCCcHHHHhhccCCCCCCCCCCCCCCCCCCCcCCCccceEEEeCCCCCCCHHhHHHhhcCCC
Q psy3345 170 EEKEEENEDESNNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLP 249 (787)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~di~~~F~~~g 249 (787)
.
T Consensus 92 ---------------------------------------------------~---------------------------- 92 (311)
T KOG4205|consen 92 ---------------------------------------------------G---------------------------- 92 (311)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred CcceeecccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecccCCccccCCCcCCCCchhhhhhhhcccccccchhhh
Q psy3345 250 LASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQF 329 (787)
Q Consensus 250 ~v~i~i~~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (787)
T Consensus 93 -------------------------------------------------------------------------------- 92 (311)
T KOG4205|consen 93 -------------------------------------------------------------------------------- 92 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q psy3345 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409 (787)
Q Consensus 330 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 409 (787)
.......|||++||.++++++++++|.+||.|..+.++.|..+.+++||+||.|.+.+...+++. ...+.|+|+.+.
T Consensus 93 --~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~ve 169 (311)
T KOG4205|consen 93 --RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVE 169 (311)
T ss_pred --cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceee
Confidence 00012269999999999999999999999999999999999999999999999999999999986 678899999999
Q ss_pred EeeCCCCCC
Q psy3345 410 LIPGKPKEN 418 (787)
Q Consensus 410 v~~~~~~~~ 418 (787)
|..+.+++.
T Consensus 170 vkrA~pk~~ 178 (311)
T KOG4205|consen 170 VKRAIPKEV 178 (311)
T ss_pred Eeeccchhh
Confidence 999998844
No 60
>KOG4206|consensus
Probab=99.62 E-value=1.5e-14 Score=135.75 Aligned_cols=198 Identities=18% Similarity=0.245 Sum_probs=141.9
Q ss_pred CCEEEEeCCCCCCCHHHHHH----hhccCCCeeEEEecC---CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEec
Q psy3345 447 KRIILVKNLPYRTLPTDLKA----LFEPFGDLGRVLVPP---YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519 (787)
Q Consensus 447 ~~~i~v~nlp~~~t~~~l~~----~F~~~G~v~~v~i~~---~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 519 (787)
..+|||.||+..+..++|+. +|++||.|..|.... -+|.|||.|.+.+.|-.|+..|+|..|+|+++.++||.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 44999999999999999887 999999999888764 55799999999999999999999999999999999996
Q ss_pred Ccc--ccccccccccccccccccccccchhhhhcccccccccCCCcccccccccc----cccCCCCCCeEEecCCCCCCC
Q psy3345 520 EGV--FAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEED----EEREPEPDTTLYIKNLNFNST 593 (787)
Q Consensus 520 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~V~NLp~~~t 593 (787)
.+. +........... +....+.. ....+..+.......+..... ......+...+++.|||..++
T Consensus 89 s~sdii~~~~~~~v~~~-~k~~~~~~--------~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKE-KKINGEIL--------ARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred CccchhhccCceecccc-Cccccccc--------cccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 652 211111000000 00000000 000000000000000000000 122356678999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeEEEEEecC
Q psy3345 594 EDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD-EHQIELKRSN 663 (787)
Q Consensus 594 ~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~-g~~l~v~~~~ 663 (787)
.+.+..+|.+|+....++++... .|.|||+|.+...|..|...++|..+. .+.+.|.++.
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~----------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPR----------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCC----------CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999988643 389999999999999999999999887 8888888764
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=3.6e-15 Score=136.92 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=77.9
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
...+++|+|.| ||+++||++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|+.||+.||+..|+|+.
T Consensus 31 ~~~~~~lfVgn-----L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 31 RLMSTKLFIGG-----LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred cCCCCEEEEeC-----CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45677899999 99999999999999999999999999988 7999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.++.+
T Consensus 106 l~V~~a~~ 113 (144)
T PLN03134 106 IRVNPAND 113 (144)
T ss_pred EEEEeCCc
Confidence 99999986
No 62
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=3.7e-15 Score=136.88 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=79.8
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|||.|||+.+|+++|+++|++||.|.+++|+.+. .+++++|||||+|.+.++|+.|+..|| +..+.|++|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kGfaFV~F~~~e~A~~Al~~ln-g~~i~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR-ETGRSRGFGFVNFNDEGAATAAISEMD-GKELNGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC-CCCCcceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEE
Confidence 4567899999999999999999999999999999999886 689999999999999999999999997 69999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99986554
No 63
>KOG1548|consensus
Probab=99.55 E-value=1.8e-13 Score=135.01 Aligned_cols=177 Identities=20% Similarity=0.401 Sum_probs=137.8
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEE--------EEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIAS--------VTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQ 648 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~ln 648 (787)
....+.|||.|||.++|.+++.++|++||.|.. |+|.++.. |..+|-|.++|-..++..-|+..|+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~------G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ------GKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC------CCccCceEEEeecccHHHHHHHHhC
Confidence 344567999999999999999999999998754 67776654 7899999999999999999999999
Q ss_pred CCccCCeEEEEEecCccccc---------------hhhhhhhcc---------ccccCCCCCEEEEecC--C--ccCc--
Q psy3345 649 NSSLDEHQIELKRSNRNLES---------------EATTVKRKS---------SNVAKQTGSKILVRNI--P--FQAK-- 698 (787)
Q Consensus 649 g~~l~g~~l~v~~~~~~~~~---------------~~~~~~~~~---------~~~~~~~~~~l~V~nL--p--~~~t-- 698 (787)
+..+.|+.|+|..+.-.... ......+.. ........++|.++|+ | +..+
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 99999999999887522111 000011100 1122235688999999 2 2223
Q ss_pred -----HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 699 -----QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 699 -----~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
.+||++-+++||.|.+|.|.-.. +.|.+-|.|.+.++|..+++.|+ |++|.||.|..+.-.
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~h-----PdGvvtV~f~n~eeA~~ciq~m~-GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDRH-----PDGVVTVSFRNNEEADQCIQTMD-GRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeccC-----CCceeEEEeCChHHHHHHHHHhc-CeeecceEEEEEEeC
Confidence 46688889999999999886543 67899999999999999999996 899999999876543
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=9.4e-14 Score=111.81 Aligned_cols=70 Identities=26% Similarity=0.463 Sum_probs=64.2
Q ss_pred EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 15 ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 15 ~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
|+|.| ||+++|++||+++|+.||.|.+|++..+++|+++|+|||.|.++++|.+|++.+++..|+||+|+
T Consensus 1 v~i~n-----lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISN-----LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEES-----STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeC-----CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 45666 99999999999999999999999999998899999999999999999999999998999999985
No 65
>KOG0106|consensus
Probab=99.50 E-value=4.3e-14 Score=134.48 Aligned_cols=166 Identities=25% Similarity=0.483 Sum_probs=135.6
Q ss_pred CeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Q psy3345 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELK 660 (787)
Q Consensus 581 ~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~ 660 (787)
..+||++||+.+.+.+|..+|..||.+..+.+.. ||+||+|.+.-+|..|+..+|+..|.|..+.|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve 68 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVE 68 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------------ccceeccCchhhhhcccchhcCceecceeeeee
Confidence 4689999999999999999999999999887763 899999999999999999999999999988888
Q ss_pred ecCccccchhhhh--h----hccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEE
Q psy3345 661 RSNRNLESEATTV--K----RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734 (787)
Q Consensus 661 ~~~~~~~~~~~~~--~----~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~ 734 (787)
++........... . ......+....+.+.|.|++..+.+++|.+.|+.+|.+....+ +++++||+
T Consensus 69 ~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------~~~~~~v~ 139 (216)
T KOG0106|consen 69 HARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------RRNFAFVE 139 (216)
T ss_pred cccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---------hcccccee
Confidence 8764322110000 0 1111223456789999999999999999999999999955544 35689999
Q ss_pred ecCHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 735 FITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 735 F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
|.+.++|.+|+..|+ +..+.|++|.+..+-.+..
T Consensus 140 Fs~~~da~ra~~~l~-~~~~~~~~l~~~~~~~d~~ 173 (216)
T KOG0106|consen 140 FSEQEDAKRALEKLD-GKKLNGRRISVEKNSRDRS 173 (216)
T ss_pred ehhhhhhhhcchhcc-chhhcCceeeecccCcchh
Confidence 999999999999997 7999999999966654443
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=1.2e-13 Score=111.32 Aligned_cols=70 Identities=21% Similarity=0.459 Sum_probs=66.2
Q ss_pred EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 15 ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 15 ~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
|+|.| ||+++|+++|+++|+.||.|..+.+..+..|+++|+|||.|.+.++|.+|++.||+..++|+.|+
T Consensus 1 l~v~n-----lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGN-----LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEES-----ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcC-----CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 45666 99999999999999999999999999988899999999999999999999999999999999985
No 67
>KOG4207|consensus
Probab=99.48 E-value=2.6e-14 Score=130.44 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=73.3
Q ss_pred cCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 19 DLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 19 ~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
-|+|.||.|-+|.++|+.+|.+||.|-||.|+.++ ++.++|||||.|....||+.|++.|||..++||-|.|.+|+=
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 35667799999999999999999999999999999 899999999999999999999999999999999999999984
No 68
>KOG0122|consensus
Probab=99.47 E-value=8.9e-14 Score=130.79 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=73.3
Q ss_pred EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEc
Q psy3345 15 ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKC 93 (787)
Q Consensus 15 ~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 93 (787)
|.|.| ||-+++|+||++||..||.|..|.|.+++ +|.++|||||.|.+.+||++||..|||.=+++-.|.|+++
T Consensus 192 vRvtN-----Lsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 192 VRVTN-----LSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred eEEec-----CccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 66666 99999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred cC
Q psy3345 94 SN 95 (787)
Q Consensus 94 ~~ 95 (787)
+|
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 97
No 69
>KOG1548|consensus
Probab=99.47 E-value=9.6e-13 Score=129.91 Aligned_cols=182 Identities=23% Similarity=0.293 Sum_probs=139.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAE--------VILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGR 406 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~ 406 (787)
-+..|||.|||.++|.+++.++|++||.|.. |.+.++.. |..+|-|.+.|-..++..-|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3557999999999999999999999997764 77777754 99999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCC-CCCCCcc-ccccccc------------cchhhhhhhcCCCCEEEEeCCCCC----CC-------H
Q psy3345 407 MLHLIPGKPKENEG-NVDGKVH-CCISERK------------LDAFNQVVEARSKRIILVKNLPYR----TL-------P 461 (787)
Q Consensus 407 ~l~v~~~~~~~~~~-~~~~~~~-~a~~~~~------------~~~~~~~~~~~~~~~i~v~nlp~~----~t-------~ 461 (787)
.|+|..+.-..... ....... .+..-.. .+. ..+...+..++|+++|+-.. .+ .
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999886541110 0000000 0000000 000 12334556789999998432 23 4
Q ss_pred HHHHHhhccCCCeeEEEec--CCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEe
Q psy3345 462 TDLKALFEPFGDLGRVLVP--PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518 (787)
Q Consensus 462 ~~l~~~F~~~G~v~~v~i~--~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 518 (787)
++|.+.+++||.|.+|.+. +..|.+.|.|.+.++|..|++.|+|+.|.||.|..+..
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 6777889999999999987 46689999999999999999999999999999988765
No 70
>KOG1457|consensus
Probab=99.45 E-value=1e-12 Score=121.45 Aligned_cols=195 Identities=22% Similarity=0.298 Sum_probs=125.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC--CC-----cEEEEEeCCHHHHHHHHHHhcCCeeC---CeeEEE
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP--YG-----ITGLVEFLQKNQAKAAFNSLAYTKFK---EVPLYL 515 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~--~~-----~~a~V~F~~~~~A~~A~~~l~~~~~~---g~~l~v 515 (787)
.-++|||.+||.++...+|..+|..|-.-+...+.. .+ -+|||.|.+..+|..|+..|||..|. +..|.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999986665444432 22 47999999999999999999999997 789999
Q ss_pred EEecCccccccccccccccccccccccc--cchhhhh----cc-------------------------ccccc---ccCC
Q psy3345 516 EWAPEGVFAEAKEKSKGKEKEKNEEEGE--EGEEEKK----EN-------------------------TAEED---NQQG 561 (787)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~-------------------------~~~~~---~~~~ 561 (787)
+++..+.-........ .+....... ......+ .. +..+. .++.
T Consensus 113 ElAKSNtK~kr~k~sg---tP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSG---TPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eehhcCcccccCCCCC---CCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 9987652111111000 000000000 0000000 00 00000 0000
Q ss_pred Cccccc--ccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHH
Q psy3345 562 VPEVEE--NVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639 (787)
Q Consensus 562 ~~~~~~--~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~ 639 (787)
-++... ....+.......-.+|||-||.+++|+++|+.+|+.|......+|... ..+..||++|.+.+.
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---------~g~~vaf~~~~~~~~ 260 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---------GGMPVAFADFEEIEQ 260 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---------CCcceEeecHHHHHH
Confidence 011100 000011111122348999999999999999999999998887777532 246789999999999
Q ss_pred HHHHHHHhCCCcc
Q psy3345 640 LNQALKVLQNSSL 652 (787)
Q Consensus 640 A~~A~~~lng~~l 652 (787)
|..|+..|+|..|
T Consensus 261 at~am~~lqg~~~ 273 (284)
T KOG1457|consen 261 ATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHhhccee
Confidence 9999999999876
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=4.5e-13 Score=107.87 Aligned_cols=70 Identities=31% Similarity=0.600 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q psy3345 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409 (787)
Q Consensus 339 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 409 (787)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788999999999999999999999999999999985
No 72
>KOG0121|consensus
Probab=99.43 E-value=2.8e-13 Score=114.11 Aligned_cols=84 Identities=26% Similarity=0.459 Sum_probs=79.5
Q ss_pred cccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 331 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
.....+++|||+||++.++|++|.++|+.+|+|..|.|-.|+.+..+.|||||+|-+.++|..|++-++|+.+..++|.+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCC
Q psy3345 411 IPGK 414 (787)
Q Consensus 411 ~~~~ 414 (787)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 8854
No 73
>KOG1457|consensus
Probab=99.42 E-value=2.1e-12 Score=119.43 Aligned_cols=176 Identities=21% Similarity=0.288 Sum_probs=126.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCC-CCcceEEEEEEcCHHHHHHHHHHhCCceeC---CeEEE
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET-DKTKGFALVTFLMPEHATQAYQHLDGTVFL---GRMLH 409 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l~ 409 (787)
...++|||.+||.++...+|+.+|..|-......+...... .-.+-+||+.|.+..+|..|+..|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 44689999999999999999999999866666666433222 225579999999999999999999999884 68999
Q ss_pred EeeCCCCCCCCCCC-----C-Cc-----------c-----------------------ccccc-----------------
Q psy3345 410 LIPGKPKENEGNVD-----G-KV-----------H-----------------------CCISE----------------- 432 (787)
Q Consensus 410 v~~~~~~~~~~~~~-----~-~~-----------~-----------------------~a~~~----------------- 432 (787)
|..++...+..... + +. + .++.+
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 98876541110000 0 00 0 00000
Q ss_pred ---cccchhh-hhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCc--EEEEEeCCHHHHHHHHHHhcCC
Q psy3345 433 ---RKLDAFN-QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI--TGLVEFLQKNQAKAAFNSLAYT 506 (787)
Q Consensus 433 ---~~~~~~~-~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~a~V~F~~~~~A~~A~~~l~~~ 506 (787)
..+..-+ .....+.-.++||.||...+++++|+.+|+.|.....++|...+| .||++|.+.+.|..|+..|+|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 0000000 001112236799999999999999999999999888888876555 6999999999999999999987
Q ss_pred eeC
Q psy3345 507 KFK 509 (787)
Q Consensus 507 ~~~ 509 (787)
.+.
T Consensus 272 ~~s 274 (284)
T KOG1457|consen 272 LLS 274 (284)
T ss_pred eec
Confidence 654
No 74
>KOG0106|consensus
Probab=99.41 E-value=5.2e-13 Score=127.15 Aligned_cols=166 Identities=26% Similarity=0.379 Sum_probs=133.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
..+||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+..+|..|+..+++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999998873 258999999999999999999999999988888888753
Q ss_pred CCCCCCC-CCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHH
Q psy3345 417 ENEGNVD-GKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ 495 (787)
Q Consensus 417 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~ 495 (787)
....... +..+.+. .-...........++|.|++..+...+|.+.|..+|.+....+ ..+.+||+|.+.++
T Consensus 74 ~~~~g~~~~g~r~~~------~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSD------SRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccch------hhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhh
Confidence 1111000 0001110 0112234556889999999999999999999999999954444 56789999999999
Q ss_pred HHHHHHHhcCCeeCCeeEEEEEe
Q psy3345 496 AKAAFNSLAYTKFKEVPLYLEWA 518 (787)
Q Consensus 496 A~~A~~~l~~~~~~g~~l~v~~~ 518 (787)
|.+|+..|++..+.++.|.+...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999444
No 75
>KOG0125|consensus
Probab=99.40 E-value=6.3e-13 Score=130.13 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=72.3
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
.||.|.| +||..-|.||+..|.+||.|.||.|+.+. ..|+|||||+|++++||.+|-.+|||+.|.||+|+|-.
T Consensus 97 kRLhVSN-----IPFrFRdpDL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 97 KRLHVSN-----IPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred ceeEeec-----CCccccCccHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4577777 99999999999999999999999999984 45899999999999999999999999999999999999
Q ss_pred ccC
Q psy3345 93 CSN 95 (787)
Q Consensus 93 ~~~ 95 (787)
|++
T Consensus 171 ATa 173 (376)
T KOG0125|consen 171 ATA 173 (376)
T ss_pred cch
Confidence 987
No 76
>KOG0122|consensus
Probab=99.40 E-value=9.5e-13 Score=123.94 Aligned_cols=82 Identities=39% Similarity=0.582 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
+.++|.|.|||.+++|.+|+++|.+||.|..+.+.+|+.||.++|||||.|.+.++|.+||..|||.-+..-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy3345 415 PK 416 (787)
Q Consensus 415 ~~ 416 (787)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.7e-12 Score=127.02 Aligned_cols=77 Identities=13% Similarity=0.287 Sum_probs=71.2
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
...|+|.| ||+.+||+||++||+.||.|.+|.|+.++ .++|||||+|.++++|..||. |||..|.||.|.|.
T Consensus 4 ~rtVfVgN-----Ls~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSN-----VSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTIT 75 (260)
T ss_pred CCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEE
Confidence 56789999 99999999999999999999999999874 467999999999999999996 79999999999999
Q ss_pred EccCC
Q psy3345 92 KCSNL 96 (787)
Q Consensus 92 ~~~~~ 96 (787)
++...
T Consensus 76 ~a~~~ 80 (260)
T PLN03120 76 PAEDY 80 (260)
T ss_pred eccCC
Confidence 99864
No 78
>KOG0125|consensus
Probab=99.38 E-value=9.9e-13 Score=128.77 Aligned_cols=82 Identities=30% Similarity=0.532 Sum_probs=75.4
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+ +.| +||||||+|.++++|.+|-.+|+ |+++.||+|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERG-SKGFGFVTmen~~dadRARa~LH-gt~VEGRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERG-SKGFGFVTMENPADADRARAELH-GTVVEGRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCC-CCccceEEecChhhHHHHHHHhh-cceeeceEEEE
Confidence 345689999999999999999999999999999999988 455 79999999999999999999995 89999999999
Q ss_pred EEcccc
Q psy3345 762 EWAEEA 767 (787)
Q Consensus 762 ~~A~~~ 767 (787)
.-|.+.
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999854
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=3.1e-12 Score=102.88 Aligned_cols=70 Identities=36% Similarity=0.673 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q psy3345 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409 (787)
Q Consensus 339 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 409 (787)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999998999999874
No 80
>KOG0114|consensus
Probab=99.36 E-value=5.4e-12 Score=102.21 Aligned_cols=92 Identities=24% Similarity=0.431 Sum_probs=78.6
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....+-|||+|||+.+|.++..++|.+||.|..|+|--. ...+|.|||.|.+..+|.+|+..|+ |..+.++.|+|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~----k~TrGTAFVVYedi~dAk~A~dhls-g~n~~~ryl~v 89 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT----KETRGTAFVVYEDIFDAKKACDHLS-GYNVDNRYLVV 89 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc----cCcCceEEEEehHhhhHHHHHHHhc-ccccCCceEEE
Confidence 345678999999999999999999999999999998443 3468999999999999999999997 89999999999
Q ss_pred EEccccccHHHHHHHHh
Q psy3345 762 EWAEEADNVEDIRKRTN 778 (787)
Q Consensus 762 ~~A~~~~~~~~~~~~~~ 778 (787)
-|-.+.+....+..+.+
T Consensus 90 lyyq~~~~~~~~~~~k~ 106 (124)
T KOG0114|consen 90 LYYQPEDAFKLMDSRKA 106 (124)
T ss_pred EecCHHHHHHHHHhHHh
Confidence 99988776544444433
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.3e-12 Score=125.05 Aligned_cols=75 Identities=19% Similarity=0.378 Sum_probs=69.6
Q ss_pred CCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEc
Q psy3345 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 685 ~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A 764 (787)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+.+. .++|||||+|.++++|..||. || |..|.|++|.|+++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~----~~~GfAFVtF~d~eaAe~All-Ln-G~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN----ERSQIAYVTFKDPQGAETALL-LS-GATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC----CCCCEEEEEeCcHHHHHHHHH-hc-CCeeCCceEEEEec
Confidence 5789999999999999999999999999999998873 357999999999999999995 86 79999999999999
Q ss_pred c
Q psy3345 765 E 765 (787)
Q Consensus 765 ~ 765 (787)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 7
No 82
>KOG4207|consensus
Probab=99.35 E-value=1.2e-12 Score=119.74 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=77.2
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
...+.|.|-||-+.++.++|+.+|++||.|-+|.|+.+. -+++++|||||.|....+|+.|+.+|+ |..|+|+.|.|+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr-~Tr~sRgFaFVrf~~k~daedA~damD-G~~ldgRelrVq 88 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDR-YTRQSRGFAFVRFHDKRDAEDALDAMD-GAVLDGRELRVQ 88 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceeccccc-ccccccceeEEEeeecchHHHHHHhhc-ceeeccceeeeh
Confidence 356889999999999999999999999999999999997 689999999999999999999999998 799999999999
Q ss_pred Ecc
Q psy3345 763 WAE 765 (787)
Q Consensus 763 ~A~ 765 (787)
+|.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 997
No 83
>KOG0149|consensus
Probab=99.33 E-value=1.6e-12 Score=122.25 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=74.3
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
.-++|||.||+++++.+.|+++|++||+|..+.|+.|+ .+|+++|||||+|.+.++|.+|++.-| ..++||+-.+.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~-~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdGR~aNcnl 87 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDK-NTGRSKGYGFVTFRDAEAATRACKDPN--PIIDGRKANCNL 87 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEecc-CCccccceeeEEeecHHHHHHHhcCCC--Ccccccccccch
Confidence 45789999999999999999999999999999999997 799999999999999999999999875 799999999998
Q ss_pred cc
Q psy3345 764 AE 765 (787)
Q Consensus 764 A~ 765 (787)
|.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 86
No 84
>KOG0149|consensus
Probab=99.32 E-value=2.2e-12 Score=121.30 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=73.5
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
-++|+|-| |||.++.++|+++|..||+|.++.|+.|+ +|+|+|||||+|.+.+.|.+|.+. -+-.|+||+..+
T Consensus 12 ~TKifVgg-----L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGG-----LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred EEEEEEcC-----cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 36899999 99999999999999999999999999999 899999999999999999999998 678999999999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
-+|.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98874
No 85
>KOG0107|consensus
Probab=99.31 E-value=3.7e-12 Score=113.88 Aligned_cols=77 Identities=29% Similarity=0.505 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
+-.++|||.||+..+++.||..+|..||.|.+|.|-.+ +.|||||+|.++.+|..|+..|+ |+.|+|.+|.|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~LD-G~~~cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYLD-GKDICGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhcC-CccccCceEEEE
Confidence 34789999999999999999999999999999999887 47999999999999999999997 799999999999
Q ss_pred Eccc
Q psy3345 763 WAEE 766 (787)
Q Consensus 763 ~A~~ 766 (787)
+...
T Consensus 81 ~S~G 84 (195)
T KOG0107|consen 81 LSTG 84 (195)
T ss_pred eecC
Confidence 9873
No 86
>KOG0121|consensus
Probab=99.31 E-value=4.4e-12 Score=106.98 Aligned_cols=82 Identities=28% Similarity=0.574 Sum_probs=75.0
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
....++|||+||++.+++++|.++|+.+|+|..+.+=.|.. +..+-|||||+|.+.++|..|++.+||..|+.++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ 107 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRP 107 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----CcCccceEEEEEecchhHHHHHHHhccCcccccc
Confidence 34578999999999999999999999999999988777665 5678899999999999999999999999999999
Q ss_pred EEEEecC
Q psy3345 657 IELKRSN 663 (787)
Q Consensus 657 l~v~~~~ 663 (787)
|.+.|..
T Consensus 108 ir~D~D~ 114 (153)
T KOG0121|consen 108 IRIDWDA 114 (153)
T ss_pred eeeeccc
Confidence 9999864
No 87
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=127.77 Aligned_cols=164 Identities=24% Similarity=0.443 Sum_probs=126.3
Q ss_pred CCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q psy3345 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIEL 659 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v 659 (787)
.++|||+|||+.+++++|.++|..||.|..+.+..+.. ++.++|||||+|.+.++|..|+..++|..+.|+.|.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~-----~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE-----TGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc-----cCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEe
Confidence 69999999999999999999999999999999999864 6889999999999999999999999999999999999
Q ss_pred EecCc--cccchhh----h----hhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCce
Q psy3345 660 KRSNR--NLESEAT----T----VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 729 (787)
Q Consensus 660 ~~~~~--~~~~~~~----~----~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g 729 (787)
.+... ....... . ...............+++.|++..++..++...|..+|.+....+.... .......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 268 (306)
T COG0724 190 QKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK-DGKIPKS 268 (306)
T ss_pred eccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC-CCccccc
Confidence 99642 1111000 0 0011122334577899999999999999999999999999777776653 2223344
Q ss_pred EEEEEecCHHHHHHHHHHhc
Q psy3345 730 FGFVEFITKNEAKRAMKALC 749 (787)
Q Consensus 730 ~afV~F~~~~~A~~Al~~l~ 749 (787)
+.++.+.....+..++....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~ 288 (306)
T COG0724 269 RSFVGNEASKDALESNSRGN 288 (306)
T ss_pred ccccchhHHHhhhhhhcccc
Confidence 44566665555555555443
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=1.1e-11 Score=99.62 Aligned_cols=69 Identities=28% Similarity=0.453 Sum_probs=65.1
Q ss_pred cCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 23 VEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 23 ~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
.|||+.+++++|+++|+.||.|..+.+..++ .++++|+|||.|.+.++|..|++.+|+..++|++|.|.
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 4599999999999999999999999999987 58999999999999999999999999999999999873
No 89
>KOG0111|consensus
Probab=99.28 E-value=2.5e-12 Score=118.53 Aligned_cols=84 Identities=26% Similarity=0.515 Sum_probs=79.8
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
...++|||.+|..++|+.-|...|=+||.|.+|.+|.++ .++++||||||+|.-.++|..||..|| +..|+||.|+|.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy-esqkHRgFgFVefe~aEDAaaAiDNMn-esEL~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY-ESQKHRGFGFVEFEEAEDAAAAIDNMN-ESELFGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccch-hcccccceeEEEeeccchhHHHhhcCc-hhhhcceeEEEe
Confidence 456889999999999999999999999999999999996 899999999999999999999999997 799999999999
Q ss_pred Eccccc
Q psy3345 763 WAEEAD 768 (787)
Q Consensus 763 ~A~~~~ 768 (787)
||+|..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 999865
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=1.2e-11 Score=126.96 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCH--HHHHHHHHHhcCCeeecCceEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK--NEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~--~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
..+.+|||+||++.+|++||+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|| |..+.||.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE---TG--RGFAFVEMssdddaEeeKAISaLN-GAEWKGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT---KG--RSFAYIDFSPSSTNSLTKLFSTYN-GCVWKGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc---cC--CceEEEEecCCcHHHHHHHHHHhc-CCeecCceeE
Confidence 45689999999999999999999999999999999954 67 99999999988 78999999997 7999999999
Q ss_pred EEEcccc
Q psy3345 761 LEWAEEA 767 (787)
Q Consensus 761 v~~A~~~ 767 (787)
|+-|+|.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9999854
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=1.1e-11 Score=127.25 Aligned_cols=76 Identities=21% Similarity=0.355 Sum_probs=71.3
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCH--HHHHHHHHHhccCccCCceEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHRE--DQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~--~~a~~a~~~~~~~~~~~~~i~ 89 (787)
..+|+|.| |+|.+|++||+.+|+.||.|.+|.|++. +| ||||||.|.+. .++.+||..|||..+.||.|+
T Consensus 10 gMRIYVGN-----LSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 10 GVRLHVGG-----LGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred ceEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 46899999 9999999999999999999999999943 56 99999999998 789999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|..|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999997
No 92
>KOG0126|consensus
Probab=99.27 E-value=6.8e-13 Score=118.88 Aligned_cols=83 Identities=30% Similarity=0.514 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
.++.-|||+|||++.||.||.-+|++||.|++|.+++|+.||+++||||+.|.+..+..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q psy3345 414 KPK 416 (787)
Q Consensus 414 ~~~ 416 (787)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 543
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=2.4e-11 Score=98.02 Aligned_cols=71 Identities=28% Similarity=0.472 Sum_probs=66.6
Q ss_pred EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 15 ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 15 ~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
|+|.| ||+.+++++|+++|..||.|..+.+..++ |.++|+|||.|.+.++|++|++.+++..+.|+.|.|.
T Consensus 2 v~i~~-----l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 2 LFVGN-----LPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred EEEcC-----CCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 66777 99999999999999999999999999887 8899999999999999999999999999999999873
No 94
>KOG0114|consensus
Probab=99.25 E-value=3.3e-11 Score=97.74 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=73.1
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
+.-.+.|||+|||+++|.++..++|..||.|..++|=..+ ..+|.|||.|.+..+|.+|+..|+|..+.++.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--------~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--------ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--------CcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 3446789999999999999999999999999999996544 47899999999999999999999999999999
Q ss_pred EEEEecCcc
Q psy3345 657 IELKRSNRN 665 (787)
Q Consensus 657 l~v~~~~~~ 665 (787)
|.|-+....
T Consensus 87 l~vlyyq~~ 95 (124)
T KOG0114|consen 87 LVVLYYQPE 95 (124)
T ss_pred EEEEecCHH
Confidence 999887643
No 95
>KOG0130|consensus
Probab=99.24 E-value=1e-11 Score=105.57 Aligned_cols=83 Identities=30% Similarity=0.439 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
-.+..|||.++...+||++|.+.|..||+|..+++-.|..||..+|||.|+|.+.++|+.|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy3345 414 KPK 416 (787)
Q Consensus 414 ~~~ 416 (787)
.-+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 754
No 96
>KOG0130|consensus
Probab=99.24 E-value=1.7e-11 Score=104.19 Aligned_cols=89 Identities=22% Similarity=0.374 Sum_probs=80.9
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+|...-|+|.| +...+||+||.+.|..||+|++++|-.++ +|-.+|||.|.|++.++|+.|+..+|+..+-|..
T Consensus 69 SVEGwIi~Vtg-----vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 69 SVEGWIIFVTG-----VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred ceeeEEEEEec-----cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 34556689999 99999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCC
Q psy3345 88 IKVEKCSNLGDTTKP 102 (787)
Q Consensus 88 i~v~~~~~~~~~~~~ 102 (787)
|.|.+|...+.+..+
T Consensus 144 v~VDw~Fv~gp~~g~ 158 (170)
T KOG0130|consen 144 VSVDWCFVKGPERGK 158 (170)
T ss_pred eeEEEEEecCCccCc
Confidence 999999975554443
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=115.14 Aligned_cols=75 Identities=12% Similarity=0.273 Sum_probs=68.9
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
..|+|.| |++.+||+||++||+.||.|.+|+|+.+ ++..|||||+|.++++|..|+. |||..|.++.|.|..
T Consensus 6 ~TV~V~N-----LS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 6 YTAEVTN-----LSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred eEEEEec-----CCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 4578888 9999999999999999999999999987 6677999999999999999994 699999999999988
Q ss_pred ccC
Q psy3345 93 CSN 95 (787)
Q Consensus 93 ~~~ 95 (787)
+..
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 765
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=7e-11 Score=95.79 Aligned_cols=73 Identities=25% Similarity=0.398 Sum_probs=68.6
Q ss_pred EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 15 ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 15 ~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
|.|+| ||+.+++++|+++|..+|.|..+.+..++.++.+|+|||.|.+.++|..|++.+++..+.|++|.|.+
T Consensus 2 i~i~~-----l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 2 LFVGN-----LPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred EEEeC-----CCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 66777 99999999999999999999999999988778899999999999999999999999999999999863
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=3.9e-11 Score=95.96 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=55.4
Q ss_pred HHHHHHHhh----ccCceEEEE-EEecC-C--CCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 31 QEQLKAKFE----EKGTVTDVQ-LKYTT-E--GKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 31 ~~~l~~~f~----~~g~i~~~~-~~~~~-~--g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
++||+++|+ .||.|.+|. |++++ + |+++|||||.|.+.++|.+|++.|||..++||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 689999999 999999996 77665 4 899999999999999999999999999999999986
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=120.38 Aligned_cols=145 Identities=34% Similarity=0.525 Sum_probs=113.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
.++|||+|||+++|+++|.++|..||.+..+.+..++.+|.++|||||.|.+.++|..|+..++|..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 67999999999999999999999999999999999988899999999999999999999999999999999999999653
Q ss_pred --CCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC
Q psy3345 416 --KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG 483 (787)
Q Consensus 416 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 483 (787)
........ .......................+++.+++..++..++...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSN---NLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccccccc---ccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 11110000 000000000000122234567889999999999999999999999999777766533
No 101
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=7.5e-11 Score=113.45 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
.+.+|||+||++.+|+++|+++|+.||+|.+|.|+++ +...|+|||+|.++++|..|+. |+|..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4578999999999999999999999999999999987 3456899999999999999995 99999999999998866
Q ss_pred CC
Q psy3345 415 PK 416 (787)
Q Consensus 415 ~~ 416 (787)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 102
>KOG0107|consensus
Probab=99.20 E-value=4.6e-11 Score=106.92 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=73.2
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q psy3345 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657 (787)
Q Consensus 578 ~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l 657 (787)
...+.|||+||+..+++.+|...|..||.|.+|.|..++. |||||+|.++-+|..|+..|+|..|.|..|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP----------GfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP----------GFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC----------CceEEeccCcccHHHHHhhcCCccccCceE
Confidence 3468999999999999999999999999999999998554 899999999999999999999999999999
Q ss_pred EEEecCcccc
Q psy3345 658 ELKRSNRNLE 667 (787)
Q Consensus 658 ~v~~~~~~~~ 667 (787)
.|.++.-...
T Consensus 78 rVE~S~G~~r 87 (195)
T KOG0107|consen 78 RVELSTGRPR 87 (195)
T ss_pred EEEeecCCcc
Confidence 9999875433
No 103
>KOG0113|consensus
Probab=99.19 E-value=6.5e-11 Score=114.80 Aligned_cols=82 Identities=32% Similarity=0.531 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
.+-++|||.-|+++++|..|+..|+.||+|..|+|+.++.||+++|||||+|....+...|.+..+|..|.|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q psy3345 414 KP 415 (787)
Q Consensus 414 ~~ 415 (787)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=1.9e-10 Score=92.72 Aligned_cols=71 Identities=46% Similarity=0.746 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
+|+|+|||..++.++|+++|..||++..+.+..++ +.++|+|||+|.+.++|..|++.+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998775 778899999999999999999999999999999886
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.1e-10 Score=89.03 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=51.5
Q ss_pred HHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEc
Q psy3345 34 LKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKC 93 (787)
Q Consensus 34 l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 93 (787)
|+++|+.||.|.+|.+..++ +|+|||+|.+.++|..|++.||+..+.|+.|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998763 699999999999999999999999999999999986
No 106
>KOG0126|consensus
Probab=99.15 E-value=6.8e-12 Score=112.52 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=75.5
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.+.-|+|.| |||.+||.||--.||.||+|.+|.|++|+ +|+|+||||..|++.-....|+..|||..|.||.|+
T Consensus 34 dsA~Iyigg-----l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGG-----LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred cceEEEECC-----CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 355699999 99999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.-+..
T Consensus 109 VDHv~~ 114 (219)
T KOG0126|consen 109 VDHVSN 114 (219)
T ss_pred eeeccc
Confidence 987764
No 107
>KOG0108|consensus
Probab=99.15 E-value=1e-10 Score=124.66 Aligned_cols=87 Identities=30% Similarity=0.567 Sum_probs=81.9
Q ss_pred CEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 686 ~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
+.|||+|+|+++++++|.++|+..|.|.++++..|+ ++|+.+||||++|.+.++|.+|++.|| |..+.||+|+|.||.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~-~tG~~~G~~f~~~~~~~~~~~a~~~lN-g~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR-ETGKPKGFGFCEFTDEETAERAIRNLN-GAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc-cCCCcCceeeEecCchhhHHHHHHhcC-CcccCCceEEeeccc
Confidence 889999999999999999999999999999999997 899999999999999999999999997 799999999999999
Q ss_pred ccccHHHHH
Q psy3345 766 EADNVEDIR 774 (787)
Q Consensus 766 ~~~~~~~~~ 774 (787)
.+.+.+..+
T Consensus 97 ~~~~~~~~~ 105 (435)
T KOG0108|consen 97 NRKNAERSL 105 (435)
T ss_pred ccchhHHHH
Confidence 777755544
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=1.8e-10 Score=87.80 Aligned_cols=56 Identities=39% Similarity=0.714 Sum_probs=50.9
Q ss_pred HHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEc
Q psy3345 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 702 L~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A 764 (787)
|+++|++||.|.++.+..+. +++|||+|.+.++|..|++.|| +..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~------~~~a~V~f~~~~~A~~a~~~l~-~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK------RGFAFVEFASVEDAQKAIEQLN-GRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS------TTEEEEEESSHHHHHHHHHHHT-TSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhC-CCEECCcEEEEEEC
Confidence 68899999999999997771 6899999999999999999997 79999999999997
No 109
>KOG0128|consensus
Probab=99.13 E-value=2.8e-13 Score=148.58 Aligned_cols=328 Identities=16% Similarity=0.110 Sum_probs=228.2
Q ss_pred CCCeEEEcCCCCCCCHHHHH-HHHHhcCCeeE-EEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 335 ESGRIFVRNLSYTVTEDDLT-KLFEKYGPLAE-VILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~-~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
..++..|.|-+..-+...|. ..|+-++-... ... +.......+||++-..++++..++..+.+......+|.+.-
T Consensus 478 md~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 478 MDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred hhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 34578889999988888888 56655432221 111 11122556899999999999999987776555444443322
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHH-HHHHhhccCCCeeEEEecCCC------cE
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPT-DLKALFEPFGDLGRVLVPPYG------IT 485 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~-~l~~~F~~~G~v~~v~i~~~~------~~ 485 (787)
..+....+ + ............+.|+.+..... .....|..+|.|..|.++..+ .+
T Consensus 555 ~~~~~~~p------r------------~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~ 616 (881)
T KOG0128|consen 555 LCPEKVLP------R------------VYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQ 616 (881)
T ss_pred hhHHhhcc------h------------hhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccch
Confidence 22110000 0 00011123334556665555444 567889999999999998733 26
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCccc
Q psy3345 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEV 565 (787)
Q Consensus 486 a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (787)
+++.+.....++.|.. .++..+.++.+.+..++.......+..
T Consensus 617 ~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~kv------------------------------------ 659 (881)
T KOG0128|consen 617 QQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFKV------------------------------------ 659 (881)
T ss_pred hhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccCc------------------------------------
Confidence 7888888888888755 455556666555554433210000000
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy3345 566 EENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALK 645 (787)
Q Consensus 566 ~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~ 645 (787)
.........++|++||++.+.+++|...|..+|.+..+++....+ .+.-+|+|+|.|..+++|.+|+.
T Consensus 660 -------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n-----~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 660 -------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN-----EKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred -------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh-----ccccccceeeEeecCCchhhhhh
Confidence 001112346899999999999999999999999988888774333 46788999999999999999999
Q ss_pred HhCCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCC
Q psy3345 646 VLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725 (787)
Q Consensus 646 ~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g 725 (787)
...++.++ ...|+|.|.|+..|.++|+.+|+.+|.+++++++.. ..|
T Consensus 728 f~d~~~~g-------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~--r~g 774 (881)
T KOG0128|consen 728 FRDSCFFG-------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV--RAG 774 (881)
T ss_pred hhhhhhhh-------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh--hcc
Confidence 65544443 234899999999999999999999999999998888 489
Q ss_pred CCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccc
Q psy3345 726 LHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766 (787)
Q Consensus 726 ~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~ 766 (787)
.++|.|+|.|.+..+|.++..... ...+.-+.+.|....|
T Consensus 775 kpkg~a~v~y~~ea~~s~~~~s~d-~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 775 KPKGKARVDYNTEADASRKVASVD-VAGKRENNGEVQVSNP 814 (881)
T ss_pred ccccceeccCCCcchhhhhcccch-hhhhhhcCccccccCC
Confidence 999999999999999999999886 5666677777777554
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=2.6e-10 Score=91.48 Aligned_cols=70 Identities=44% Similarity=0.652 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 341 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999988777899999999999999999999999999999999887
No 111
>KOG0113|consensus
Probab=99.12 E-value=2e-10 Score=111.46 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=73.8
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
--+||.- |+|.++|..|+..|+.||.|..|+|+.++ +|+++|||||.|+.+-|-..|.+..+|..|+|+.|-|.
T Consensus 102 ~TLFv~R-----LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 102 KTLFVAR-----LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred ceeeeee-----ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3478888 99999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EccC
Q psy3345 92 KCSN 95 (787)
Q Consensus 92 ~~~~ 95 (787)
+-..
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 8765
No 112
>KOG0111|consensus
Probab=99.11 E-value=4.9e-11 Score=110.09 Aligned_cols=83 Identities=28% Similarity=0.540 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
...++|||++|..++|+.-|...|-+||.|.+|.++.|-.+++++|||||+|...++|..|+..||+..+.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy3345 414 KPK 416 (787)
Q Consensus 414 ~~~ 416 (787)
.|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 875
No 113
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.10 E-value=5.2e-10 Score=90.60 Aligned_cols=74 Identities=34% Similarity=0.642 Sum_probs=67.7
Q ss_pred EEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 687 ~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
+|+|.|||..+++++|+++|+.||.|..+.+..+. .+.++|+|||.|.+.++|..|+..++ +..+.|++|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~--~~~~~~~~~v~f~s~~~a~~a~~~~~-~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK--DTKSKGFAFVEFEDEEDAEKALEALN-GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC--CCCcceEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEeC
Confidence 48999999999999999999999999999998874 44678999999999999999999997 6889999999875
No 114
>KOG4660|consensus
Probab=99.07 E-value=1.4e-09 Score=115.00 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=109.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
....++|+|-|||..+++++|+.+|+.||+|..|+... ...|.+||+|-+..+|++|+++|++..|.|+.|. ++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k-~~ 145 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK-RP 145 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-CC
Confidence 44577999999999999999999999999999976643 3567999999999999999999999999999988 22
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC-CCcEEEEEeC
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFL 491 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~a~V~F~ 491 (787)
...........+ ..-+........+.+...-....++.- |++.....-+...++-+|.+.. ...+ -...-+++|.
T Consensus 146 ~~~~~~~~~~~~--~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 146 GGARRAMGLQSG--TSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFA 221 (549)
T ss_pred Ccccccchhccc--chhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhc
Confidence 111100000000 000000000000111111112222222 7777777666677777887765 3322 2235677887
Q ss_pred CHHHHHHHHHHhcCCeeCCeeEEEEEe
Q psy3345 492 QKNQAKAAFNSLAYTKFKEVPLYLEWA 518 (787)
Q Consensus 492 ~~~~A~~A~~~l~~~~~~g~~l~v~~~ 518 (787)
+..++..+.... |..+.+......+.
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFS 247 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEec
Confidence 777775554432 55555666555554
No 115
>KOG0108|consensus
Probab=99.03 E-value=4.9e-10 Score=119.59 Aligned_cols=80 Identities=34% Similarity=0.566 Sum_probs=77.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
+.|||+|+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.|||..+.||.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998754
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=2.3e-09 Score=85.69 Aligned_cols=61 Identities=26% Similarity=0.500 Sum_probs=55.4
Q ss_pred HHHHHHHHH----hcCCeeEEE-EecCCCC--CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 350 EDDLTKLFE----KYGPLAEVI-LPIDKET--DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 350 e~~l~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999996 6676666 889999999999999999999999999999999876
No 117
>KOG0112|consensus
Probab=98.95 E-value=8e-10 Score=122.31 Aligned_cols=164 Identities=16% Similarity=0.274 Sum_probs=137.7
Q ss_pred cCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy3345 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDE 654 (787)
Q Consensus 575 ~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g 654 (787)
.......+||++||+..+++.+|+..|..+|.|..|.|..-.. +...-||||.|.+...+-.|...+.+..|..
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------KTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------CcccchhhhhhhccccCcccchhhcCCcccc
Confidence 3455678999999999999999999999999999999876432 3445699999999999999999999988876
Q ss_pred eEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEE
Q psy3345 655 HQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734 (787)
Q Consensus 655 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~ 734 (787)
-.+++.+... ...+.+.+++++|+.-.....|...|..||.|..|.+-.. --||+|.
T Consensus 441 g~~r~glG~~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~yayi~ 497 (975)
T KOG0112|consen 441 GTHRIGLGQP----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QPYAYIQ 497 (975)
T ss_pred Cccccccccc----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------Ccceeee
Confidence 6666555432 2346788999999999999999999999999988766333 2499999
Q ss_pred ecCHHHHHHHHHHhcCCeeecC--ceEEEEEccccc
Q psy3345 735 FITKNEAKRAMKALCQSTHLYG--RRLVLEWAEEAD 768 (787)
Q Consensus 735 F~~~~~A~~Al~~l~~~~~~~G--r~l~v~~A~~~~ 768 (787)
|.++..|+.|+..|. |..|+| ++|.|.||.+.-
T Consensus 498 yes~~~aq~a~~~~r-gap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 498 YESPPAAQAATHDMR-GAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred cccCccchhhHHHHh-cCcCCCCCcccccccccCCC
Confidence 999999999999997 799988 889999998543
No 118
>KOG4660|consensus
Probab=98.95 E-value=3.6e-09 Score=111.88 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=65.2
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC-CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEE
Q psy3345 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 514 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~ 514 (787)
.....+|+|-|||..++.++|..+|+.||+|..|...+ ..+.+||+|-+.-+|++|++.|+++++.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568899999999999999999999999999988877 457999999999999999999999999998887
No 119
>KOG4661|consensus
Probab=98.90 E-value=2e-09 Score=112.52 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=74.2
Q ss_pred EEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEcc
Q psy3345 16 SLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCS 94 (787)
Q Consensus 16 ~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 94 (787)
.-+||||.+|...+-..||+.+|++||.|...+++.+- ...-|+|+||++.+.++|.+||..||.+.+.||.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34788888899999999999999999999999999865 66789999999999999999999999999999999999998
Q ss_pred C
Q psy3345 95 N 95 (787)
Q Consensus 95 ~ 95 (787)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 5
No 120
>KOG0128|consensus
Probab=98.90 E-value=2.9e-11 Score=133.09 Aligned_cols=322 Identities=18% Similarity=0.145 Sum_probs=225.8
Q ss_pred ccceEEEeCCCCCCCHHhHH-HhhcCCCCc--ceeec----ccceEEEeecChHhHHHHHhcCCcc-cCCeeEEEeeccc
Q psy3345 223 QYHTIVVKNLPAGVKKKDLK-AYFKPLPLA--SVRTT----FLGMAYIGFKDEKNCNKALNKNKSF-WKGKQLNIYKYSK 294 (787)
Q Consensus 223 ~~~~v~v~nLp~~~te~di~-~~F~~~g~v--~i~i~----~~g~afV~F~~~~~A~~Al~~~~~~-l~g~~i~v~~~~~ 294 (787)
-.++..|-|-|..-....|. .|+.-++.+ .+.+. ..+.||+.-..++++..++.....+ -..-.+.++
T Consensus 478 md~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~---- 553 (881)
T KOG0128|consen 478 MDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESF---- 553 (881)
T ss_pred hhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHH----
Confidence 34567788888888888888 777766554 23333 3368888889999888888733211 111111110
Q ss_pred CCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHH-HHHHHHHhcCCeeEEEEecCCC
Q psy3345 295 DNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTED-DLTKLFEKYGPLAEVILPIDKE 373 (787)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~-~l~~~F~~~G~i~~v~i~~~~~ 373 (787)
........+ .............+.++-+..... ..+..|..+|.+..|.++....
T Consensus 554 ------------------~~~~~~~~p------r~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~ 609 (881)
T KOG0128|consen 554 ------------------DLCPEKVLP------RVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF 609 (881)
T ss_pred ------------------hhhHHhhcc------hhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc
Confidence 000000000 000111223456677777766665 5677899999999999875322
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEe
Q psy3345 374 TDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVK 453 (787)
Q Consensus 374 ~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~ 453 (787)
.-..-.++++.+.....+..|.. ..+..+.++...+..+.+.+...... . .+...+...+++++
T Consensus 610 k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~~~~k----v-----------s~n~~R~~~~~fvs 673 (881)
T KOG0128|consen 610 KAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKEENFK----V-----------SPNEIRDLIKIFVS 673 (881)
T ss_pred cccccchhhhhhccccchhhccc-ccccccCCccccCCCCCchhhhhccC----c-----------CchHHHHHHHHHHh
Confidence 11122288999999999999985 67778888888887776552211100 0 01112345678999
Q ss_pred CCCCCCCHHHHHHhhccCCCeeEEEec--C----CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccc
Q psy3345 454 NLPYRTLPTDLKALFEPFGDLGRVLVP--P----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAK 527 (787)
Q Consensus 454 nlp~~~t~~~l~~~F~~~G~v~~v~i~--~----~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 527 (787)
||+..+.+.+|...|..+|.+..+.+. . -+|.|||.|..+++|.+|+....++.++
T Consensus 674 nl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------------ 735 (881)
T KOG0128|consen 674 NLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------------ 735 (881)
T ss_pred hcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------------
Confidence 999999999999999999988765554 1 3478999999999999998855443332
Q ss_pred cccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCe
Q psy3345 528 EKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPI 607 (787)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v 607 (787)
...++|.|.|+..|.++++.+++.+|.+
T Consensus 736 ----------------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~ 763 (881)
T KOG0128|consen 736 ----------------------------------------------------KISVAISGPPFQGTKEELKSLASKTGNV 763 (881)
T ss_pred ----------------------------------------------------hhhhheeCCCCCCchHHHHhhccccCCc
Confidence 2468999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCc
Q psy3345 608 ASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664 (787)
Q Consensus 608 ~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~ 664 (787)
.+.+++...+ |.++|.++|.|.+..+|.++...+....+.-..+.|..+.+
T Consensus 764 ~~~~~vt~r~------gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 764 TSLRLVTVRA------GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccchhhhhc------cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999888776 78999999999999999999998888888888888877654
No 121
>KOG0129|consensus
Probab=98.86 E-value=2.2e-08 Score=105.09 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=119.8
Q ss_pred cCCCccceEEEeCCCCCCCHHhHHHhhcCCCCcceeec----------ccc---eEEEeecChHhHHHHHhcCCcccCCe
Q psy3345 219 VHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTT----------FLG---MAYIGFKDEKNCNKALNKNKSFWKGK 285 (787)
Q Consensus 219 ~~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~----------~~g---~afV~F~~~~~A~~Al~~~~~~l~g~ 285 (787)
...+-++-|+|++||++++|+.|...|..||.+.|... ++| |+|+-|.++...+..+.---..-.+-
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 34566788999999999999999999999998765544 566 99999999999988776111111223
Q ss_pred eEEEeecccCCccccCCCcCCCCchhhhhhhhccccc--ccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHH-hcCC
Q psy3345 286 QLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKS--QEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFE-KYGP 362 (787)
Q Consensus 286 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~ 362 (787)
++.|. .+.... ......+|.- ..-..+....+.+.++|||++||..++-++|..+|. -||.
T Consensus 334 yf~vs--s~~~k~--------------k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg 397 (520)
T KOG0129|consen 334 YFKVS--SPTIKD--------------KEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG 397 (520)
T ss_pred EEEEe--cCcccc--------------cceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc
Confidence 33331 000000 0022224421 111122344567789999999999999999999999 7999
Q ss_pred eeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHH
Q psy3345 363 LAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397 (787)
Q Consensus 363 i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~ 397 (787)
|..+-|-.|++-+.++|-|-|+|.+.....+||++
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999999977899999999999999999999974
No 122
>KOG0415|consensus
Probab=98.84 E-value=4.6e-09 Score=104.05 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=79.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
.++...|||..|.+-+|.++|.-+|+.||+|.+|.|+++..||.+..||||+|.+.+++.+|.-.|++..|..+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy3345 413 GKPK 416 (787)
Q Consensus 413 ~~~~ 416 (787)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7653
No 123
>KOG4210|consensus
Probab=98.84 E-value=2.4e-09 Score=109.38 Aligned_cols=180 Identities=25% Similarity=0.309 Sum_probs=144.7
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q psy3345 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657 (787)
Q Consensus 578 ~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l 657 (787)
...+++|++++...+.+.+...++..+|....+......+ ...++|++.+.|...+.+..|+.......+.+..+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-----~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-----SLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhcc-----ccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 3468999999999999998999999999887777766444 46799999999999999999999554467788877
Q ss_pred EEEecCccccchhhhhhhccccccCCCCCEEE-EecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEec
Q psy3345 658 ELKRSNRNLESEATTVKRKSSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736 (787)
Q Consensus 658 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~ 736 (787)
...+....... ...........+..+++ |.||++.+++++|+..|..+|.|..++++.+. .+|.++|||+|+|.
T Consensus 161 ~~dl~~~~~~~----~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~-~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 161 EKDLNTRRGLR----PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE-ESGDSKGFAYVDFS 235 (285)
T ss_pred cCccccccccc----ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCC-Cccchhhhhhhhhh
Confidence 77666543321 11111112223344455 99999999999999999999999999999986 89999999999999
Q ss_pred CHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 737 TKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 737 ~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
....+..|+.. . ...+.|+.+++.+..+...
T Consensus 236 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 236 AGNSKKLALND-Q-TRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hchhHHHHhhc-c-cCcccCcccccccCCCCcc
Confidence 99999999987 5 5899999999999987643
No 124
>KOG0415|consensus
Probab=98.84 E-value=4.5e-09 Score=104.10 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=78.6
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+.|.+.++|+. |-+-+|.+||.-+||.||.|..|.+++++ +|-+-.||||.|.+.+++++|.=+|++..|+.|+
T Consensus 236 ~PPeNVLFVCK-----LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 236 KPPENVLFVCK-----LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred CCCcceEEEEe-----cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 45889999999 99999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|+|.++..
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99999875
No 125
>KOG0129|consensus
Probab=98.79 E-value=1.7e-07 Score=98.64 Aligned_cols=165 Identities=21% Similarity=0.310 Sum_probs=121.8
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCccc---EEEEEeCCHHHHHHHHHHhCCCcc
Q psy3345 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMG---YGFVQFYTRESLNQALKVLQNSSL 652 (787)
Q Consensus 576 ~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G---~afV~F~~~e~A~~A~~~lng~~l 652 (787)
...-.+.|||++||.+++++.|...|..||.+. +.-+.... ..+...++| |.|+.|.+......-+.++ ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~--~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~ 328 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKAN--SRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SE 328 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCcc--ccccCCCCCcccEEEEEecchHHHHHHHHHH---hh
Confidence 345568999999999999999999999999753 22221111 112223445 9999999999888777754 33
Q ss_pred CCeEEEEEecCccccchhh---------hhhhccccccCCCCCEEEEecCCccCcHHHHHHHHH-hcCCeeEEEeccccC
Q psy3345 653 DEHQIELKRSNRNLESEAT---------TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFK-AFGELKFVRLPKKMV 722 (787)
Q Consensus 653 ~g~~l~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~-~~G~I~~v~i~~~~~ 722 (787)
+...+.++.+.+....... ...-.....+-.+.++|||++||--+|.++|-.+|+ -||.|..+.|-.|+
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~- 407 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP- 407 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc-
Confidence 5556666555544332110 011111334556889999999999999999999998 79999999998885
Q ss_pred CCCCCceEEEEEecCHHHHHHHHHH
Q psy3345 723 GSGLHRGFGFVEFITKNEAKRAMKA 747 (787)
Q Consensus 723 ~~g~~~g~afV~F~~~~~A~~Al~~ 747 (787)
+-+.++|-|.|.|.+-++-.+||.+
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHhh
Confidence 6788999999999999999999986
No 126
>KOG4208|consensus
Probab=98.77 E-value=3.6e-08 Score=91.40 Aligned_cols=87 Identities=24% Similarity=0.387 Sum_probs=77.7
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhc-CCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAF-GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~-G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
......++|..+|..+-+.+|..+|.+| |.|..+++-++. .+|.++|||||+|.+++.|.-|-..|| ++.|+|+.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk-rTGNSKgYAFVEFEs~eVA~IaAETMN-NYLl~e~lL~ 123 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK-RTGNSKGYAFVEFESEEVAKIAAETMN-NYLLMEHLLE 123 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc-ccCCcCceEEEEeccHHHHHHHHHHhh-hhhhhhheee
Confidence 3456779999999999999999999988 778888887776 799999999999999999999999998 5999999999
Q ss_pred EEEccccccH
Q psy3345 761 LEWAEEADNV 770 (787)
Q Consensus 761 v~~A~~~~~~ 770 (787)
+.+-.|+..+
T Consensus 124 c~vmppe~~v 133 (214)
T KOG4208|consen 124 CHVMPPEQKV 133 (214)
T ss_pred eEEeCchhhh
Confidence 9999888433
No 127
>KOG0153|consensus
Probab=98.76 E-value=2.2e-08 Score=99.65 Aligned_cols=78 Identities=19% Similarity=0.461 Sum_probs=71.3
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
+..-++|||++|-..+++.||++.|-+||+|.++++... +++|||+|.|.++|+.|...+-+...+.|.+|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 445689999999999999999999999999999999776 5799999999999999999865578999999999
Q ss_pred EEccc
Q psy3345 762 EWAEE 766 (787)
Q Consensus 762 ~~A~~ 766 (787)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99998
No 128
>KOG4208|consensus
Probab=98.73 E-value=3.2e-08 Score=91.79 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKY-GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
.....++|..+|..+.+.+|..+|.+| |.+..+++-+++.||.++|||||+|.+.+.|.-|-+.||+..|.|+.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345579999999999999999999998 7888888889999999999999999999999999999999999999998877
Q ss_pred CCC
Q psy3345 413 GKP 415 (787)
Q Consensus 413 ~~~ 415 (787)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 554
No 129
>KOG0226|consensus
Probab=98.66 E-value=2.6e-08 Score=94.86 Aligned_cols=169 Identities=15% Similarity=0.224 Sum_probs=129.9
Q ss_pred CeEEecCCCCCCCHHH-H--HHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q psy3345 581 TTLYIKNLNFNSTEDS-I--RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657 (787)
Q Consensus 581 ~~l~V~NLp~~~t~~~-L--~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l 657 (787)
...++.|+-..+..+- | -..|+.|..+....++++.. +.-.+++|+.|.....-.++-..-+++.++-..+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p------~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~V 170 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP------QPIRPEAFESFKASDALLKAETEKEKKKIGKPPV 170 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC------CccCcccccCcchhhhhhhhccccccccccCcce
Confidence 3455566555555444 2 56677777666666666543 4567899999999988888888778888877775
Q ss_pred EEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecC
Q psy3345 658 ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 737 (787)
Q Consensus 658 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~ 737 (787)
++.-...-.. ...........+||-+.|-.+++++-|-..|.+|-.-...++.++. .+|+++|||||.|.+
T Consensus 171 R~a~gtswed--------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-RTgKSkgygfVSf~~ 241 (290)
T KOG0226|consen 171 RLAAGTSWED--------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-RTGKSKGYGFVSFRD 241 (290)
T ss_pred eeccccccCC--------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccc-cccccccceeeeecC
Confidence 5543322111 1123445677899999999999999999999999888888888886 799999999999999
Q ss_pred HHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 738 KNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 738 ~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
+.++.+||..|| |..++.|.|.+.-..
T Consensus 242 pad~~rAmrem~-gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 242 PADYVRAMREMN-GKYVGSRPIKLRKSE 268 (290)
T ss_pred HHHHHHHHHhhc-ccccccchhHhhhhh
Confidence 999999999997 799999999986554
No 130
>KOG0533|consensus
Probab=98.65 E-value=7.1e-08 Score=94.64 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=75.0
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
+.+|.|.| ||+.++++||+++|..||.+..|-|-+++.|++.|.|=|.|...+||.+|++.||+..++|+.+.+.
T Consensus 83 ~~~v~v~N-----L~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSN-----LPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cceeeeec-----CCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 36688888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccC
Q psy3345 92 KCSN 95 (787)
Q Consensus 92 ~~~~ 95 (787)
....
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 8775
No 131
>KOG0132|consensus
Probab=98.64 E-value=5.9e-08 Score=106.02 Aligned_cols=78 Identities=22% Similarity=0.526 Sum_probs=72.2
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
.+++|||++|+..+++.||..+|+.||.|.+|.+... ||+|||++...++|.+|+++|+ ...+.++.|++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-------R~cAfI~M~~RqdA~kalqkl~-n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-------RGCAFIKMVRRQDAEKALQKLS-NVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-------CceeEEEEeehhHHHHHHHHHh-cccccceeeEEee
Confidence 6899999999999999999999999999999988665 7999999999999999999998 5999999999999
Q ss_pred cccccc
Q psy3345 764 AEEADN 769 (787)
Q Consensus 764 A~~~~~ 769 (787)
|....-
T Consensus 492 a~g~G~ 497 (894)
T KOG0132|consen 492 AVGKGP 497 (894)
T ss_pred eccCCc
Confidence 985443
No 132
>KOG0112|consensus
Probab=98.50 E-value=9.6e-08 Score=106.25 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=138.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEe
Q psy3345 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI 411 (787)
Q Consensus 332 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 411 (787)
+...+++||++||+..+++.+|+..|..+|.+.+|.|-+-+ -+...-||||.|.+...+-.|...+.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34467899999999999999999999999999999885542 34555699999999999999998888887776666665
Q ss_pred eCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeC
Q psy3345 412 PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFL 491 (787)
Q Consensus 412 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~ 491 (787)
+..+ .....+.+++.+|+.......|...|..||.|..|.+.....+|+|.|.
T Consensus 447 lG~~---------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~ye 499 (975)
T KOG0112|consen 447 LGQP---------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYE 499 (975)
T ss_pred cccc---------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecc
Confidence 5432 2334688999999999999999999999999999999998899999999
Q ss_pred CHHHHHHHHHHhcCCeeCC--eeEEEEEecCc
Q psy3345 492 QKNQAKAAFNSLAYTKFKE--VPLYLEWAPEG 521 (787)
Q Consensus 492 ~~~~A~~A~~~l~~~~~~g--~~l~v~~~~~~ 521 (787)
+...|+.|+..+.|..|+| +.+.|.++...
T Consensus 500 s~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 500 SPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 9999999999999999985 67888887543
No 133
>KOG0132|consensus
Probab=98.50 E-value=3e-07 Score=100.66 Aligned_cols=87 Identities=30% Similarity=0.368 Sum_probs=77.1
Q ss_pred CCCCcccceEEE--ecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 6 SGPVVPRNHISL--LDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 6 ~~~~~~~~~~~~--~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
+.|.++...|.| +-|||-+||.+++|.||+.+|..||+|..|.++-. ||+|||++..-.||.+|+.+|++..+
T Consensus 408 glP~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv 482 (894)
T KOG0132|consen 408 GLPTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKV 482 (894)
T ss_pred cCCCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccc
Confidence 456665555444 56888889999999999999999999999988876 89999999999999999999999999
Q ss_pred CCceEEEEEccCCC
Q psy3345 84 FSSRIKVEKCSNLG 97 (787)
Q Consensus 84 ~~~~i~v~~~~~~~ 97 (787)
.++.|.|.||..+|
T Consensus 483 ~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 483 ADKTIKIAWAVGKG 496 (894)
T ss_pred cceeeEEeeeccCC
Confidence 99999999998754
No 134
>KOG4454|consensus
Probab=98.49 E-value=4e-08 Score=91.31 Aligned_cols=137 Identities=22% Similarity=0.350 Sum_probs=116.1
Q ss_pred CCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q psy3345 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIEL 659 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v 659 (787)
.++|||.|+...++++-|.++|-+.|+|..|.|+...+ +..+ ||||.|.+.-...-|+..+||..+.+..+.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d------~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD------QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc------CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 47999999999999999999999999999999998877 3444 9999999999999999999999999999988
Q ss_pred EecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHH
Q psy3345 660 KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739 (787)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~ 739 (787)
++-.-... --|...++.+.+.+.|+.-|.+..++++++ .+|+++.++||.+-...
T Consensus 82 ~~r~G~sh-----------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~--~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 82 TLRCGNSH-----------------------APLDERVTEEILYEVFSQAGPIEGVRIPTD--NDGRNRNFGFVTYQRLC 136 (267)
T ss_pred ccccCCCc-----------------------chhhhhcchhhheeeecccCCCCCcccccc--ccCCccCccchhhhhhh
Confidence 77432211 014456788888999999999999999998 46999999999998877
Q ss_pred HHHHHHHHh
Q psy3345 740 EAKRAMKAL 748 (787)
Q Consensus 740 ~A~~Al~~l 748 (787)
+.-.|+...
T Consensus 137 ~~P~~~~~y 145 (267)
T KOG4454|consen 137 AVPFALDLY 145 (267)
T ss_pred cCcHHhhhh
Confidence 777777654
No 135
>KOG4661|consensus
Probab=98.48 E-value=2.9e-07 Score=96.67 Aligned_cols=81 Identities=25% Similarity=0.464 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
..+++|+|.+|...+...||+.+|++||.|+-.+|+.+....| .++||||++.+..+|.++|..|+ .+.|+||-|.|+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPG-aRCYGfVTMSts~eAtkCI~hLH-rTELHGrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPG-ARCYGFVTMSTSAEATKCIEHLH-RTELHGRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCC-cceeEEEEecchHHHHHHHHHhh-hhhhcceeeeee
Confidence 4678999999999999999999999999999999988853333 58999999999999999999995 799999999999
Q ss_pred Ecc
Q psy3345 763 WAE 765 (787)
Q Consensus 763 ~A~ 765 (787)
-|+
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 987
No 136
>KOG4210|consensus
Probab=98.41 E-value=3.4e-07 Score=93.77 Aligned_cols=169 Identities=23% Similarity=0.303 Sum_probs=127.9
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-------ccceEEEeecChHhHHHHHhcCCc-ccCCeeEEEeec
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-------FLGMAYIGFKDEKNCNKALNKNKS-FWKGKQLNIYKY 292 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-------~~g~afV~F~~~~~A~~Al~~~~~-~l~g~~i~v~~~ 292 (787)
+...+.+++++...+.+.++..++...|.. ...+. .+|++++.|...+.+..||...+. .+.++.+..-
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d-- 163 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD-- 163 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc--
Confidence 467889999999999999888999888754 33322 679999999999999999997664 3444443330
Q ss_pred ccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEecC
Q psy3345 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIF-VRNLSYTVTEDDLTKLFEKYGPLAEVILPID 371 (787)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 371 (787)
..... .. ...............++| |++|++.+++++|+.+|..+|.|..++++.+
T Consensus 164 ----l~~~~-----------------~~--~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 164 ----LNTRR-----------------GL--RPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ----ccccc-----------------cc--cccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 00000 00 000000011223344555 9999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 372 KETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 372 ~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
..++.++|||||.|.....+..++.. ....+.++++.+....+.
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999999999999999999999976 788999999999887654
No 137
>KOG0226|consensus
Probab=98.41 E-value=4.2e-07 Score=86.79 Aligned_cols=129 Identities=26% Similarity=0.383 Sum_probs=98.7
Q ss_pred ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCC
Q psy3345 257 FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335 (787)
Q Consensus 257 ~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (787)
-.+.+|+.|.....-.++-. .+++.++.++|.+- . +. +-.......|. ..
T Consensus 139 ~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a---~-------gt-------swedPsl~ew~------------~~ 189 (290)
T KOG0226|consen 139 IRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA---A-------GT-------SWEDPSLAEWD------------ED 189 (290)
T ss_pred cCcccccCcchhhhhhhhccccccccccCcceeec---c-------cc-------ccCCcccccCc------------cc
Confidence 34788998888777766666 45666666665551 0 00 00011111222 23
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
..+||-+.|..+++++.|-..|.+|-......+++++.||+++||+||.|.+..++.+|++.|+|..++.++|.+.-+.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 4589999999999999999999999888888999999999999999999999999999999999999999999886544
No 138
>KOG0533|consensus
Probab=98.39 E-value=1e-06 Score=86.54 Aligned_cols=83 Identities=30% Similarity=0.477 Sum_probs=75.8
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|+|.|||..++++||+++|..||.++.+-|-.+ ..|.+.|.|=|.|...++|..|++.++ +..+.|+.|.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~--~~G~s~Gta~v~~~r~~DA~~avk~~~-gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD--RAGRSLGTADVSFNRRDDAERAVKKYN-GVALDGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC--CCCCCCccceeeecchHhHHHHHHHhc-CcccCCceeeeEE
Confidence 4478999999999999999999999999988888887 599999999999999999999999997 5999999999998
Q ss_pred cccccc
Q psy3345 764 AEEADN 769 (787)
Q Consensus 764 A~~~~~ 769 (787)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 875553
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.38 E-value=3e-06 Score=70.97 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=69.3
Q ss_pred CEEEEecCCccCcHHHHHHHHHh--cCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec----CceE
Q psy3345 686 SKILVRNIPFQAKQSEVEELFKA--FGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY----GRRL 759 (787)
Q Consensus 686 ~~l~V~nLp~~~t~~dL~~~F~~--~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~----Gr~l 759 (787)
++|.|+|||...|.++|.+++.. .|...-+.+|.|+ .++.+.|||||.|.+++.|.+-.+.++ |..+. .+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf-~~~~N~GYAFVNf~~~~~~~~F~~~f~-g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDF-KNKCNLGYAFVNFTSPQAAIRFYKAFN-GKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeec-cCCCceEEEEEEcCCHHHHHHHHHHHc-CCccccCCCCcEE
Confidence 68999999999999999999974 3777889999997 788899999999999999999999997 56554 4788
Q ss_pred EEEEccc
Q psy3345 760 VLEWAEE 766 (787)
Q Consensus 760 ~v~~A~~ 766 (787)
.|.||+-
T Consensus 80 ~i~yAri 86 (97)
T PF04059_consen 80 EISYARI 86 (97)
T ss_pred EEehhHh
Confidence 9999973
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.32 E-value=3.9e-06 Score=70.30 Aligned_cols=79 Identities=22% Similarity=0.425 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC----CeEEEE
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKY--GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL----GRMLHL 410 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~----g~~l~v 410 (787)
++|.|+|+|...|.++|.+++... |...-+.++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 489999999999999999988653 67777899999889999999999999999999999999998774 467777
Q ss_pred eeCCC
Q psy3345 411 IPGKP 415 (787)
Q Consensus 411 ~~~~~ 415 (787)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77763
No 141
>KOG0153|consensus
Probab=98.32 E-value=1.3e-06 Score=87.42 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=72.5
Q ss_pred hhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh-cCCeeCCeeEEEEEe
Q psy3345 440 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL-AYTKFKEVPLYLEWA 518 (787)
Q Consensus 440 ~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~~ 518 (787)
.++.....++|+|++|-..+++.+|+++|-+||+|.++.+.+..+.|||+|.+.+.|+.|..++ +...+.|..|.|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3445667899999999999999999999999999999999999999999999999999987765 556688999999999
Q ss_pred cC
Q psy3345 519 PE 520 (787)
Q Consensus 519 ~~ 520 (787)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 76
No 142
>KOG4454|consensus
Probab=98.21 E-value=2.6e-07 Score=86.00 Aligned_cols=141 Identities=22% Similarity=0.299 Sum_probs=113.9
Q ss_pred CCccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-----ccceEEEeecChHhHHHHHh-cCCcccCCeeEEEeecc
Q psy3345 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-----FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNIYKYS 293 (787)
Q Consensus 221 ~~~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-----~~g~afV~F~~~~~A~~Al~-~~~~~l~g~~i~v~~~~ 293 (787)
....++|+|.|+-..++|+-|.++|-..|+| .|.|. .-.+|||.|.++-....|++ +|+..+.++.+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 4467899999999999999999999999998 66666 22399999999999999999 78888888888873
Q ss_pred cCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcC----CCCCCCHHHHHHHHHhcCCeeEEEEe
Q psy3345 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRN----LSYTVTEDDLTKLFEKYGPLAEVILP 369 (787)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~l~~~F~~~G~i~~v~i~ 369 (787)
++-++ |...++++.+...|+..|++..+++.
T Consensus 83 ---------------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~ 117 (267)
T KOG4454|consen 83 ---------------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIP 117 (267)
T ss_pred ---------------------------------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccc
Confidence 22233 45568889999999999999999999
Q ss_pred cCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 370 IDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 370 ~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
.+.+ |+++.++|+.+......-.++....+..+.-+++.+
T Consensus 118 ~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 118 TDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred cccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 8854 889999999988888888888766665544444333
No 143
>KOG0116|consensus
Probab=98.21 E-value=2.8e-06 Score=90.60 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=70.1
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
....|+|+| ||.++|+.+|+++|..||.|+...|.... .+++.+||||.|.+.+.++.||.. +-..|+++++.
T Consensus 287 ~~~~i~V~n-----lP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~ 360 (419)
T KOG0116|consen 287 DGLGIFVKN-----LPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLN 360 (419)
T ss_pred cccceEeec-----CCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEE
Confidence 344488888 99999999999999999999998888854 566669999999999999999999 89999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|+--++
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 987654
No 144
>KOG0151|consensus
Probab=98.21 E-value=2.1e-06 Score=93.15 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=75.2
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEecccc--CCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM--VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~--~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~ 758 (787)
..+..++|||.||++.++++.|...|.+||.|.+++|+... -+..+.+.+|||.|.+..+|.+|+..|+ |..+++..
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-g~iv~~~e 248 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-GIIVMEYE 248 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-ceeeeeee
Confidence 35678999999999999999999999999999999997654 2234567799999999999999999997 79999999
Q ss_pred EEEEEccc
Q psy3345 759 LVLEWAEE 766 (787)
Q Consensus 759 l~v~~A~~ 766 (787)
|++-|+++
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999963
No 145
>KOG0116|consensus
Probab=98.18 E-value=2.5e-06 Score=90.87 Aligned_cols=80 Identities=34% Similarity=0.517 Sum_probs=68.6
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
....|||+|||++++..+|+++|..||.|+..+|.... ..+...+||||+|.+..+++.|+.+- -..++|++|.|+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~-~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS-PGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec-cCCCcCceEEEEEeecchhhhhhhcC--ccccCCeeEEEEe
Confidence 34459999999999999999999999999999887763 23444599999999999999999984 5889999999987
Q ss_pred ccc
Q psy3345 764 AEE 766 (787)
Q Consensus 764 A~~ 766 (787)
-++
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 664
No 146
>KOG4209|consensus
Probab=98.09 E-value=4.3e-06 Score=82.70 Aligned_cols=82 Identities=29% Similarity=0.464 Sum_probs=76.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
..+...+||+|+.+.+|.+++..+|+.||.|..+.|+.++.+|.++|||||+|.+.+.+..|+. |+|..+.|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456689999999999999999999999999999999999888999999999999999999998 999999999999988
Q ss_pred CCC
Q psy3345 413 GKP 415 (787)
Q Consensus 413 ~~~ 415 (787)
...
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 654
No 147
>KOG4209|consensus
Probab=98.02 E-value=7.6e-06 Score=80.96 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=72.9
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
+....++|.+ +-+.+|-+++..+|+.||.|..|.|+.++ .|.++|||||.|.+.+.+..||+ ||+..|.|+.|
T Consensus 99 ~d~~sv~v~n-----vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 99 VDAPSVWVGN-----VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred cCCceEEEec-----cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 3445578888 99999999999999999999999999999 57899999999999999999999 79999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
+|..-+-
T Consensus 173 ~vt~~r~ 179 (231)
T KOG4209|consen 173 EVTLKRT 179 (231)
T ss_pred eeeeeee
Confidence 9998764
No 148
>KOG4676|consensus
Probab=98.02 E-value=5.2e-06 Score=84.06 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=117.7
Q ss_pred cceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec----------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEeec
Q psy3345 224 YHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT----------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKY 292 (787)
Q Consensus 224 ~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~----------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~ 292 (787)
..+|.|.||.+++|.+++..+|.-+|.+ .++|. ....|||.|.+...+..|-.+....+-++.|.|.+|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3489999999999999999999999987 66666 346999999999999999887766667788888776
Q ss_pred ccCCcccc-------C--C---CcCCCCchhhhhhh-hcccc-------cccchhhhhcc-cCCCCeEEEcCCCCCCCHH
Q psy3345 293 SKDNSAKY-------S--G---AADDNNNASMENIK-AKHWK-------SQEDSVQFAED-IAESGRIFVRNLSYTVTED 351 (787)
Q Consensus 293 ~~~~~~~~-------~--~---~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~-~~~~~~l~V~nLp~~~te~ 351 (787)
.....+.. + . ..+........... ..+.. +.......... ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 55444421 0 0 00000000000000 00000 00000000000 1113679999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q psy3345 352 DLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL 404 (787)
Q Consensus 352 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 404 (787)
++.+.|..+|.+...++. .|-..-+|-+.|........|+. ++|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999998877763 34445578899999999999986 6777665
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.01 E-value=2.5e-05 Score=61.83 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=47.6
Q ss_pred CEEEEecCCccCcHHH----HHHHHHhcC-CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 686 SKILVRNIPFQAKQSE----VEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 686 ~~l~V~nLp~~~t~~d----L~~~F~~~G-~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
+-|+|.|||...+... |++++..+| .|.+| +.+.|+|.|.+.+.|.+|...|+ |..++|++|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----------~~~tAilrF~~~~~A~RA~KRme-gEdVfG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----------SGGTAILRFPNQEFAERAQKRME-GEDVFGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHT-T--SSSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----------eCCEEEEEeCCHHHHHHHHHhhc-ccccccceEE
Confidence 4699999999887654 777777886 45433 23679999999999999999997 7999999999
Q ss_pred EEEcc
Q psy3345 761 LEWAE 765 (787)
Q Consensus 761 v~~A~ 765 (787)
|+|..
T Consensus 71 v~~~~ 75 (90)
T PF11608_consen 71 VSFSP 75 (90)
T ss_dssp EESS-
T ss_pred EEEcC
Confidence 99985
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=3.1e-05 Score=66.70 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=53.7
Q ss_pred CCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC----CeeecCceEE
Q psy3345 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ----STHLYGRRLV 760 (787)
Q Consensus 685 ~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~----~~~~~Gr~l~ 760 (787)
++.|+|.+++..++.++|++.|+.||.|..|.+.+. -..|+|.|.+++.|+.|+..+.. +..+.|..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 367899999999999999999999999999988654 23699999999999999998752 2356778888
Q ss_pred EEEccccccHHHHHHHH
Q psy3345 761 LEWAEEADNVEDIRKRT 777 (787)
Q Consensus 761 v~~A~~~~~~~~~~~~~ 777 (787)
++.-..+++.+.+.+..
T Consensus 74 ~~vLeGeeE~~Yw~ki~ 90 (105)
T PF08777_consen 74 LEVLEGEEEEEYWKKII 90 (105)
T ss_dssp EE---HHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHH
Confidence 88877777666654443
No 151
>KOG4676|consensus
Probab=97.93 E-value=1e-05 Score=81.94 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=123.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC---------cEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEE
Q psy3345 447 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG---------ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEW 517 (787)
Q Consensus 447 ~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---------~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 517 (787)
...|-|.||.+.++.++++.+|.-.|.|..+.+.++- ..|||.|.+...+..| +.|-++.|-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEe
Confidence 3489999999999999999999999999988887632 3699999999888877 55888888899998887
Q ss_pred ecCccccccccc------cccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCC
Q psy3345 518 APEGVFAEAKEK------SKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFN 591 (787)
Q Consensus 518 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~ 591 (787)
+...+....+.- ...+...+.+..++........+....+...+ ..+...........-.++++|.+|+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailkt---P~Lp~~~~A~kleeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKT---PELPPQAAAKKLEEIRRTREVQSLISA 162 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecC---CCCChHhhhhhhHHHHhhhhhhcchhh
Confidence 766643333110 00111111111111111110111000000000 000000000111112378999999999
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q psy3345 592 STEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD 653 (787)
Q Consensus 592 ~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~ 653 (787)
+...++.+.|..+|.|........ ...-+|.|+|........|+. ++|..+.
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask---------~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASK---------SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhcc---------CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999999988776543 334578899999999999998 5676665
No 152
>KOG0151|consensus
Probab=97.90 E-value=1.8e-05 Score=86.09 Aligned_cols=86 Identities=30% Similarity=0.425 Sum_probs=75.3
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q psy3345 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEH 655 (787)
Q Consensus 576 ~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~ 655 (787)
.....++|||+||++.++++.|...|..||+|.+++|+--.. .....+.+-+|||-|-+..+|.+|++.|+|..+.+.
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRt--EeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRT--EEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccc--hhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 355678999999999999999999999999999999986432 122356677999999999999999999999999999
Q ss_pred EEEEEecC
Q psy3345 656 QIELKRSN 663 (787)
Q Consensus 656 ~l~v~~~~ 663 (787)
.+++.|+.
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99999984
No 153
>KOG2193|consensus
Probab=97.84 E-value=2e-06 Score=87.65 Aligned_cols=152 Identities=20% Similarity=0.295 Sum_probs=121.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCc-eeCCeEEEEeeCCCC
Q psy3345 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGT-VFLGRMLHLIPGKPK 416 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~~~ 416 (787)
.+|++||.+.++..+|..+|.....-..-.++. -.|||||.+.+...|.+|++.++|. .+.|..+.+..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 689999999999999999997552111111111 3469999999999999999999986 789999999876654
Q ss_pred CCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC-CC--cEEEEEeCCH
Q psy3345 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP-YG--ITGLVEFLQK 493 (787)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~--~~a~V~F~~~ 493 (787)
....+.+-++|+|.....+.|..+...||.+..|.... +. ...-|+|.+.
T Consensus 77 ---------------------------kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~ 129 (584)
T KOG2193|consen 77 ---------------------------KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQ 129 (584)
T ss_pred ---------------------------HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHH
Confidence 12244588999999999999999999999998766533 22 2345789999
Q ss_pred HHHHHHHHHhcCCeeCCeeEEEEEecCcc
Q psy3345 494 NQAKAAFNSLAYTKFKEVPLYLEWAPEGV 522 (787)
Q Consensus 494 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 522 (787)
+.++.|+.+|+|-.+....+.+.|.|...
T Consensus 130 ~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 130 QQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 99999999999999999999999887653
No 154
>KOG2193|consensus
Probab=97.84 E-value=2.4e-06 Score=87.07 Aligned_cols=153 Identities=21% Similarity=0.333 Sum_probs=120.4
Q ss_pred CeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCeEEEE
Q psy3345 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNS-SLDEHQIEL 659 (787)
Q Consensus 581 ~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~-~l~g~~l~v 659 (787)
..+|++||.+..+.++|..+|...- +.. ...--.-.||+||.+.+...|.+|++.++|. .+.|.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak------~~~-----~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK------IPG-----SGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc------CCC-----CcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence 3589999999999999999997531 110 0001123589999999999999999999995 588999998
Q ss_pred EecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEe-ccccCCCCCCceEEEEEecCH
Q psy3345 660 KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRL-PKKMVGSGLHRGFGFVEFITK 738 (787)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i-~~~~~~~g~~~g~afV~F~~~ 738 (787)
..+-.+.. ..+.+-|+|+|+..-++-|-.+...||.+..|.. ..+ .-.-..-|.|.+.
T Consensus 71 ~~sv~kkq----------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~-----~etavvnvty~~~ 129 (584)
T KOG2193|consen 71 EHSVPKKQ----------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD-----SETAVVNVTYSAQ 129 (584)
T ss_pred cchhhHHH----------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc-----hHHHHHHHHHHHH
Confidence 77654333 3445889999999999999999999999998865 222 1223345899999
Q ss_pred HHHHHHHHHhcCCeeecCceEEEEEccc
Q psy3345 739 NEAKRAMKALCQSTHLYGRRLVLEWAEE 766 (787)
Q Consensus 739 ~~A~~Al~~l~~~~~~~Gr~l~v~~A~~ 766 (787)
+.++.||..|+ +..+....+.|.|--.
T Consensus 130 ~~~~~ai~kl~-g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 130 QQHRQAIHKLN-GPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHhhc-chHhhhhhhhcccCch
Confidence 99999999997 6999999999999753
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.80 E-value=0.0001 Score=58.44 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=46.6
Q ss_pred eEEEcCCCCCCCHHHHHH----HHHhcC-CeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 338 RIFVRNLSYTVTEDDLTK----LFEKYG-PLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~~----~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
.|+|.|||.+.+...|+. ++..+| .|..| +.+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 699999999999887654 555665 56554 125799999999999999999999999999999998
Q ss_pred CCC
Q psy3345 413 GKP 415 (787)
Q Consensus 413 ~~~ 415 (787)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 753
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.58 E-value=0.00021 Score=61.52 Aligned_cols=69 Identities=28% Similarity=0.324 Sum_probs=46.0
Q ss_pred CEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC-----eeCCeeEEEE
Q psy3345 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYT-----KFKEVPLYLE 516 (787)
Q Consensus 448 ~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~-----~~~g~~l~v~ 516 (787)
..|.+.+++..++.++|++.|+.||.|..|.+.+....|+|.|.+++.|+.|+..+.-. .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889999999999999999999999999999998899999999999999999987544 4445555444
No 157
>KOG0115|consensus
Probab=97.48 E-value=0.00025 Score=68.51 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=85.1
Q ss_pred HHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEec
Q psy3345 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLP 718 (787)
Q Consensus 639 ~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~ 718 (787)
-|..|-..|.+....|+.|+|.|+.. ..|+|.||+.-+..+.|.+.|+.||.|....+.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~ 64 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAK 64 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------ceEEEEecchhhhhHHHHHhhhhcCccchheee
Confidence 35667777899999999999999754 349999999999999999999999999988777
Q ss_pred cccCCCCCCceEEEEEecCHHHHHHHHHHhcCCee---ecCceEEEEEc
Q psy3345 719 KKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH---LYGRRLVLEWA 764 (787)
Q Consensus 719 ~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~---~~Gr~l~v~~A 764 (787)
.| ..+++.+-++|.|...-.|.+|+...+++-. ..|++.-|.-+
T Consensus 65 vD--~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 65 VD--DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ec--ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 77 5899999999999999999999999865332 22455555443
No 158
>KOG1995|consensus
Probab=97.39 E-value=0.00012 Score=74.45 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=78.9
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeE--------EEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeee
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKF--------VRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL 754 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~--------v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~ 754 (787)
....+|||-+||..+++++|.++|.++|.|.. +.|.++. +++..+|-|.|.|.++..|+.|+.-++ +..+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk-eT~~~KGeatvS~~D~~~akaai~~~a-gkdf 141 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK-ETGAPKGEATVSYEDPPAAKAAIEWFA-GKDF 141 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc-cccCcCCceeeeecChhhhhhhhhhhc-cccc
Confidence 34567999999999999999999999998754 5667776 799999999999999999999999997 7999
Q ss_pred cCceEEEEEccccccHHHHH
Q psy3345 755 YGRRLVLEWAEEADNVEDIR 774 (787)
Q Consensus 755 ~Gr~l~v~~A~~~~~~~~~~ 774 (787)
.|..|.|.+|+....++-++
T Consensus 142 ~gn~ikvs~a~~r~~ve~~r 161 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGVESVR 161 (351)
T ss_pred cCCCchhhhhhhccCccccc
Confidence 99999999998777665554
No 159
>KOG2314|consensus
Probab=97.34 E-value=0.00015 Score=77.29 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=61.2
Q ss_pred cceEEEecCcccCCCccCCH-------HHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 12 RNHISLLDLDEVEFIYKITQ-------EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~-------~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
.+.|+|-| .|. +-+ .-|..+|+++|.|.++.++.+..|+.+||.|+.|++..+|+.|++.|||..++
T Consensus 58 D~vVvv~g-----~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDG-----APV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECC-----Ccc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 45567777 664 222 34568999999999999999998999999999999999999999999998776
Q ss_pred C-ceEEEEEcc
Q psy3345 85 S-SRIKVEKCS 94 (787)
Q Consensus 85 ~-~~i~v~~~~ 94 (787)
- .+..|..-+
T Consensus 132 knHtf~v~~f~ 142 (698)
T KOG2314|consen 132 KNHTFFVRLFK 142 (698)
T ss_pred ccceEEeehhh
Confidence 4 455554433
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.30 E-value=0.0005 Score=50.99 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=41.4
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHH
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAAL 75 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 75 (787)
-|.|.| .|.+..+ ++..+|..||+|+++.+.. ..-.+||.|.+..+|++||
T Consensus 3 wI~V~G-----f~~~~~~-~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSG-----FPPDLAE-EVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEe-----ECchHHH-HHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 477777 8877664 4556899999999988872 3569999999999999996
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.00073 Score=67.36 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHH------HHHhhccCceEEEEEEecC-CCCc-ceEE--EEEecCHHHHHHH
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQL------KAKFEEKGTVTDVQLKYTT-EGKF-RRFA--FIGYHREDQAQAA 74 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l------~~~f~~~g~i~~~~~~~~~-~g~~-~g~a--fv~f~~~~~a~~a 74 (787)
++.-+|-.+-+.|-| ||..+-.+++ .++|+.||.|..|.|-+.. .-.+ .+-+ ||+|.+.|||.+|
T Consensus 107 sniRVvQKNLvYVig-----i~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarc 181 (480)
T COG5175 107 SNIRVVQKNLVYVIG-----IPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARC 181 (480)
T ss_pred ccceeeecceeEEec-----CCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHH
Confidence 444455556666666 9998877772 4899999998877665432 1111 2324 9999999999999
Q ss_pred HHHhccCccCCceEEEEEccC
Q psy3345 75 LDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 75 ~~~~~~~~~~~~~i~v~~~~~ 95 (787)
|...||++++||.|...+...
T Consensus 182 Ia~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 182 IAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred HHHhccccccCceEeeecCch
Confidence 999999999999999887664
No 162
>KOG1995|consensus
Probab=97.23 E-value=0.00032 Score=71.32 Aligned_cols=84 Identities=26% Similarity=0.389 Sum_probs=76.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA--------EVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL 404 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 404 (787)
.....+|||-+||..+++.+|.++|.++|.|. .|.|.+++.|+.++|-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44566899999999999999999999998775 3778888999999999999999999999999999999999
Q ss_pred CeEEEEeeCCCC
Q psy3345 405 GRMLHLIPGKPK 416 (787)
Q Consensus 405 g~~l~v~~~~~~ 416 (787)
|.+|.|.++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999888754
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.14 E-value=0.00098 Score=66.47 Aligned_cols=81 Identities=20% Similarity=0.440 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHHhcCCeeEEEEecCCCCC-CcceE--EEEEEcCHHHHHHHHHHhCCceeCCe
Q psy3345 336 SGRIFVRNLSYTVTEDDL------TKLFEKYGPLAEVILPIDKETD-KTKGF--ALVTFLMPEHATQAYQHLDGTVFLGR 406 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l------~~~F~~~G~i~~v~i~~~~~~~-~~~g~--afV~F~~~~~A~~a~~~l~~~~~~g~ 406 (787)
..-+||-+||+.+..+++ .++|++||.|..|.|-+...+. .-.+. .||+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 346899999998877773 4799999999988775432111 11122 39999999999999999999999999
Q ss_pred EEEEeeCCCC
Q psy3345 407 MLHLIPGKPK 416 (787)
Q Consensus 407 ~l~v~~~~~~ 416 (787)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999887654
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0022 Score=54.35 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=53.0
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEE-eccccC-----CCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVR-LPKKMV-----GSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~-i~~~~~-----~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
..+.|.|.+.|+. ....|.+.|++||.|.+.. +.++.. ..-......-|.|.++.+|.+||+. ||+.+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcCc
Confidence 3567999999998 5556888999999997764 222100 0011245789999999999999997 58999997
Q ss_pred eEE-EEEcc
Q psy3345 758 RLV-LEWAE 765 (787)
Q Consensus 758 ~l~-v~~A~ 765 (787)
-|. |.|++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 555 88875
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.08 E-value=0.0019 Score=54.70 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=53.3
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEE-EEec-------CCCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQ-LKYT-------TEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~-~~~~-------~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
+.-|.|-| .|.. ....|-++|+.||.|.+.. +..+ +......+-.|+|.++.+|.+||.+ ||..|
T Consensus 6 ~~wVtVFG-----fp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~ 78 (100)
T PF05172_consen 6 ETWVTVFG-----FPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIF 78 (100)
T ss_dssp CCEEEEE--------GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CeEEEEEc-----cCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEE
Confidence 44577777 9987 5678889999999987764 1110 1112357999999999999999999 99999
Q ss_pred CCc-eEEEEEccC
Q psy3345 84 FSS-RIKVEKCSN 95 (787)
Q Consensus 84 ~~~-~i~v~~~~~ 95 (787)
.|. .|-|.++++
T Consensus 79 ~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 79 SGSLMVGVKPCDP 91 (100)
T ss_dssp TTCEEEEEEE-HH
T ss_pred cCcEEEEEEEcHH
Confidence 986 556777754
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.06 E-value=0.0013 Score=48.79 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=44.8
Q ss_pred CEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHH
Q psy3345 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAF 500 (787)
Q Consensus 448 ~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~ 500 (787)
+.|.|.+.|.+.. +.+...|..||+|..+.++......+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4688888886655 456669999999999999988899999999999999985
No 167
>KOG0115|consensus
Probab=97.04 E-value=0.0016 Score=63.08 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCccccccccccc
Q psy3345 494 NQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDE 573 (787)
Q Consensus 494 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (787)
.-|..|-..|.++...|+.+.|.|+..
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------------------------------- 31 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------------------------------------------------- 31 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------------------------------------------------
Confidence 346677778999999999999999943
Q ss_pred ccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy3345 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQ 648 (787)
Q Consensus 574 ~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~ln 648 (787)
..|+|.||+..++.+.|..-|+.||+|....+..|.. +.+.|-++|.|...-.|..|...++
T Consensus 32 -------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r------~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 -------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR------GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred -------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc------ccccccchhhhhcchhHHHHHHHhc
Confidence 3699999999999999999999999999988888765 6788999999999999999999874
No 168
>KOG2202|consensus
Probab=96.90 E-value=0.00043 Score=67.13 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=56.5
Q ss_pred HHHHHHhh-ccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 32 EQLKAKFE-EKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 32 ~~l~~~f~-~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
+||-..|+ +||+|+.+.|..+..-..+|-+||.|...|+|++|+..||+.++.|+.|..+++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555555 88999999998877667899999999999999999999999999999999999865
No 169
>KOG3152|consensus
Probab=96.67 E-value=0.0013 Score=63.73 Aligned_cols=73 Identities=18% Similarity=0.331 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCC--------CCcc----eEEEEEEcCHHHHHHHHHHhCCce
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET--------DKTK----GFALVTFLMPEHATQAYQHLDGTV 402 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--------~~~~----g~afV~F~~~~~A~~a~~~l~~~~ 402 (787)
....||+++||+.+...-|+++|+.||.|-.|.+-....+ |.+. ..|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3558999999999999999999999999999998775544 2222 348999999999999999999999
Q ss_pred eCCeE
Q psy3345 403 FLGRM 407 (787)
Q Consensus 403 ~~g~~ 407 (787)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 170
>KOG2314|consensus
Probab=96.61 E-value=0.0085 Score=64.33 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=63.1
Q ss_pred CCCCEEEEecCCccCc------HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC
Q psy3345 683 QTGSKILVRNIPFQAK------QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t------~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G 756 (787)
.-..+|+|-|+|---. ..-|..+|+++|.|....+|.+ +.|..+||.|++|.+..+|+.|++.||+.+....
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~--e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPID--EEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccC--ccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 5578899999986432 2337889999999999999988 4677999999999999999999999985344445
Q ss_pred ceEEEEE
Q psy3345 757 RRLVLEW 763 (787)
Q Consensus 757 r~l~v~~ 763 (787)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6777654
No 171
>KOG1855|consensus
Probab=96.59 E-value=0.0057 Score=63.57 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=58.0
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccc---c-CCCCCC--------ceEEEEEecCHHHHHHHHHHhc
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK---M-VGSGLH--------RGFGFVEFITKNEAKRAMKALC 749 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~---~-~~~g~~--------~g~afV~F~~~~~A~~Al~~l~ 749 (787)
..++++|.+.|||.+-.-+.|.++|+.+|.|.+|+|++. + +..|.+ +-+|+|+|...+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357899999999999999999999999999999999876 2 222322 4579999999999999999985
No 172
>KOG2202|consensus
Probab=96.46 E-value=0.0015 Score=63.42 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=53.5
Q ss_pred HHHHHhhc-cCCCeeEEEecCCC-----cEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccc
Q psy3345 462 TDLKALFE-PFGDLGRVLVPPYG-----ITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523 (787)
Q Consensus 462 ~~l~~~F~-~~G~v~~v~i~~~~-----~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 523 (787)
+++...|+ +||+|..+.+-.+. |.+||.|...++|++|+..||+++|.|++|..++.+..-|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 56666776 89999988776644 5799999999999999999999999999999999987644
No 173
>KOG3152|consensus
Probab=96.25 E-value=0.0032 Score=61.00 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=62.7
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCC---CCCCCC----cccEEEEEeCCHHHHHHHHHHhCCCc
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPK---SPGQFL----SMGYGFVQFYTRESLNQALKVLQNSS 651 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~~~~~----s~G~afV~F~~~e~A~~A~~~lng~~ 651 (787)
..-.||++|||+.+...-|+++|+.||.|-.|.+....+.. ..+.+. ...-|.|+|.+...|.+....|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34689999999999999999999999999999987765420 001122 22347899999999999999999999
Q ss_pred cCCeE
Q psy3345 652 LDEHQ 656 (787)
Q Consensus 652 l~g~~ 656 (787)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99965
No 174
>KOG1855|consensus
Probab=96.19 E-value=0.0059 Score=63.44 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCc--------ccEEEEEeCCHHHHHHHHHHhC
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS--------MGYGFVQFYTRESLNQALKVLQ 648 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s--------~G~afV~F~~~e~A~~A~~~ln 648 (787)
..+.++|.+.|||.+-.-+.|.++|+.+|.|.+|+|..-..-.....+.+ +-+|+|+|...+.|.+|...||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 45689999999999988999999999999999999987411012223333 4569999999999999999887
Q ss_pred CCccCCeEEEEEec
Q psy3345 649 NSSLDEHQIELKRS 662 (787)
Q Consensus 649 g~~l~g~~l~v~~~ 662 (787)
...-.-.-|+|.+.
T Consensus 308 ~e~~wr~glkvkLl 321 (484)
T KOG1855|consen 308 PEQNWRMGLKVKLL 321 (484)
T ss_pred hhhhhhhcchhhhh
Confidence 65554444555443
No 175
>KOG4849|consensus
Probab=96.15 E-value=0.0052 Score=61.73 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYG--PLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
.++||+||-+.+|++||.+.+...| .+.++++..+..+|.++|||.|...+....++.++.|..+.|.|..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4899999999999999999988766 56777777787889999999999999999999999999999999877777665
Q ss_pred C
Q psy3345 415 P 415 (787)
Q Consensus 415 ~ 415 (787)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 4
No 176
>KOG1996|consensus
Probab=96.15 E-value=0.008 Score=59.16 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCCCEEEEeCCC--CCC---CHHHHHHhhccCCCeeEEEecCCCc-------EEEEEeCCHHHHHHHHHHhcCCeeCCee
Q psy3345 445 RSKRIILVKNLP--YRT---LPTDLKALFEPFGDLGRVLVPPYGI-------TGLVEFLQKNQAKAAFNSLAYTKFKEVP 512 (787)
Q Consensus 445 ~~~~~i~v~nlp--~~~---t~~~l~~~F~~~G~v~~v~i~~~~~-------~a~V~F~~~~~A~~A~~~l~~~~~~g~~ 512 (787)
.++.+|+++|+= -.+ -++++...|.+||.|..|.|....+ -.||+|...++|.+|+-.|||+.|+|+.
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 345566667662 223 2467888999999999888764222 4899999999999999999999999999
Q ss_pred EEEEEecCccc
Q psy3345 513 LYLEWAPEGVF 523 (787)
Q Consensus 513 l~v~~~~~~~~ 523 (787)
+...|.....|
T Consensus 359 v~A~Fyn~ekf 369 (378)
T KOG1996|consen 359 VSACFYNLEKF 369 (378)
T ss_pred eeheeccHHhh
Confidence 99988865544
No 177
>KOG1996|consensus
Probab=96.10 E-value=0.013 Score=57.69 Aligned_cols=83 Identities=19% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCEEEEecC--CccCc---HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce
Q psy3345 684 TGSKILVRNI--PFQAK---QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758 (787)
Q Consensus 684 ~~~~l~V~nL--p~~~t---~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~ 758 (787)
+.+.|.++|+ +.+++ ++++.+.+++||.|..|-|.-.++..-.----.||+|...++|.+|+-.|| |+.|+||.
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-GRyFGGr~ 358 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-GRYFGGRV 358 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-Cceeccee
Confidence 4444666666 34444 456899999999999988765531111111136999999999999999997 89999999
Q ss_pred EEEEEcccc
Q psy3345 759 LVLEWAEEA 767 (787)
Q Consensus 759 l~v~~A~~~ 767 (787)
+...|...+
T Consensus 359 v~A~Fyn~e 367 (378)
T KOG1996|consen 359 VSACFYNLE 367 (378)
T ss_pred eeheeccHH
Confidence 999998643
No 178
>KOG2416|consensus
Probab=95.96 E-value=0.0072 Score=65.27 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=68.3
Q ss_pred ccccccCCCCCEEEEecCCccCcHHHHHHHHH-hcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCee-
Q psy3345 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFK-AFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH- 753 (787)
Q Consensus 676 ~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~-~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~- 753 (787)
-..+.....+..|||.||=--+|..+|+.++. ..|.|...+|-+. +..|||.|.+.++|.....+|+|-.+
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-------KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-------KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-------hcceeEecccHHHHHHHHHHHhccccC
Confidence 34445667889999999988889999999998 5677777755333 56799999999999999999975332
Q ss_pred -ecCceEEEEEccccc
Q psy3345 754 -LYGRRLVLEWAEEAD 768 (787)
Q Consensus 754 -~~Gr~l~v~~A~~~~ 768 (787)
-++++|.+.|+..++
T Consensus 508 ~sNPK~L~adf~~~de 523 (718)
T KOG2416|consen 508 PSNPKHLIADFVRADE 523 (718)
T ss_pred CCCCceeEeeecchhH
Confidence 345999999998654
No 179
>KOG4849|consensus
Probab=95.87 E-value=0.0051 Score=61.79 Aligned_cols=75 Identities=9% Similarity=0.221 Sum_probs=66.8
Q ss_pred cccCCCccCCHHHHHHHhhccC--ceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 21 DEVEFIYKITQEQLKAKFEEKG--TVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 21 ~~~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
+|-||-|.+|.+||.+.....| .+-++++.-++ +|+|+|||.|..-+....++-++.|-...|.|..=.|..+..
T Consensus 84 YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK 161 (498)
T KOG4849|consen 84 YVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK 161 (498)
T ss_pred EecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence 3445999999999999999988 67889999888 899999999999999999999999999999998888877764
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.26 E-value=0.081 Score=47.70 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCcc
Q psy3345 596 SIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRN 665 (787)
Q Consensus 596 ~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~ 665 (787)
+|.+.|..||.+.-+++.- +.-+|.|.+...|.+|+. ++|..+.|+.|.|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~-------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC-------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 6778899999988887764 458999999999999999 9999999999999886543
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.14 E-value=0.072 Score=42.68 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=44.6
Q ss_pred ccceEEEeCCCCCCCHHhHHHhhcCCCCcceeecccceEEEeecChHhHHHHHh
Q psy3345 223 QYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALN 276 (787)
Q Consensus 223 ~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~~~g~afV~F~~~~~A~~Al~ 276 (787)
..++.+|. .|......||.++|++||-+.|..+....|||...+.+.|..++.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHH
Confidence 45677777 999999999999999999999999988999999999999999888
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.99 E-value=0.12 Score=46.70 Aligned_cols=56 Identities=32% Similarity=0.394 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 352 DLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 352 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
+|.+.|..||.+.-++++-+ .-+|+|.+-+.|.+|++ ++|..++|+.|.|....+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 67778889999888877543 47999999999999997 9999999999999987764
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.96 E-value=0.11 Score=39.49 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCEEEEecCCccCcHHHHHHHHHhc----CCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHh
Q psy3345 685 GSKILVRNIPFQAKQSEVEELFKAF----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748 (787)
Q Consensus 685 ~~~l~V~nLp~~~t~~dL~~~F~~~----G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l 748 (787)
...|+|+|+ .+++.+||+.+|..| + ...|...-|. .|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT--------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC--------cEEEEECCHHHHHHHHHcC
Confidence 457999999 458888999999998 5 5567766662 4889999999999999865
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.57 E-value=0.16 Score=45.02 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCCCCEEEEecCCcc----CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 682 KQTGSKILVRNIPFQ----AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~----~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
..+..+|.|+=|+.. -+-+.+-...+.||.|.+|.+.-. ..|.|.|.+..+|-+|+.++. ...-|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr--------qsavVvF~d~~SAC~Av~Af~--s~~pgt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR--------QSAVVVFKDITSACKAVSAFQ--SRAPGT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC--------ceEEEEehhhHHHHHHHHhhc--CCCCCc
Confidence 346677887655444 344456667789999999988544 369999999999999999994 466789
Q ss_pred eEEEEEcc
Q psy3345 758 RLVLEWAE 765 (787)
Q Consensus 758 ~l~v~~A~ 765 (787)
.+..+|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 99998865
No 185
>KOG2416|consensus
Probab=94.51 E-value=0.032 Score=60.54 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=63.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee---CCeEE
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFE-KYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVF---LGRML 408 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~---~g~~l 408 (787)
...++.|||.||-...|.-+|+.++. ..|.|.+.+|-. -+..|||.|.+.++|.....+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34567899999999999999999999 566677765522 334799999999999999999999865 66888
Q ss_pred EEeeCCC
Q psy3345 409 HLIPGKP 415 (787)
Q Consensus 409 ~v~~~~~ 415 (787)
.+.+...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8888664
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.16 E-value=0.066 Score=51.06 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=46.6
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhc-cCce---EEEEEEecC--C-CCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEE-KGTV---TDVQLKYTT--E-GKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~-~g~i---~~~~~~~~~--~-g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
...+|+||. ||+++||+++.+..+. ++.- ..+.-.+.. . -....-|||.|.+.++...-.+.+||..|
T Consensus 6 ~~~KvVIR~-----LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRR-----LPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEE-----E-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeC-----CCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 456899999 9999999999998887 6654 233322322 1 12346799999999999999999999654
Q ss_pred C
Q psy3345 84 F 84 (787)
Q Consensus 84 ~ 84 (787)
.
T Consensus 81 ~ 81 (176)
T PF03467_consen 81 V 81 (176)
T ss_dssp E
T ss_pred E
Confidence 3
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.08 E-value=0.14 Score=38.93 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=44.6
Q ss_pred ceEEEeCCCCCCCHHhHHHhhcCC----CCcceeecccceEEEeecChHhHHHHHh
Q psy3345 225 HTIVVKNLPAGVKKKDLKAYFKPL----PLASVRTTFLGMAYIGFKDEKNCNKALN 276 (787)
Q Consensus 225 ~~v~v~nLp~~~te~di~~~F~~~----g~v~i~i~~~g~afV~F~~~~~A~~Al~ 276 (787)
..|+|+|+. +.+.+||..||..+ ++..|..+.-..|-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHH
Confidence 469999996 68889999999999 6667888877788999999999999986
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.89 E-value=0.28 Score=39.39 Aligned_cols=62 Identities=23% Similarity=0.354 Sum_probs=45.8
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~ 79 (787)
.+|..++.+|+-.. .|..=...||.++|+.||.| .|.-+-+ .-|||.....++|..|+..++
T Consensus 2 ~d~~P~RdHVFhlt-----FPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 2 PDPQPSRDHVFHLT-----FPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp S----SGCCEEEEE-------TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred CCCCCCcceEEEEe-----CchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 35677888999999 99999999999999999984 4555544 479999999999999999865
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.14 E-value=0.32 Score=43.13 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=56.5
Q ss_pred cCCCCEEEEeCCCCCC----CHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEec
Q psy3345 444 ARSKRIILVKNLPYRT----LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 519 (787)
.++-.+|.|+=|...+ +...+....+.||+|.+|.+. ++..|.|.|.+..+|-+|+.+++. ...|..+.+.|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 4456678886555544 445566678889999998754 556899999999999999999876 5667888888864
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.08 E-value=0.82 Score=39.64 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=53.0
Q ss_pred CCCCcccceEEEecCcccCCCc-cCCHHHHHHHhhcc-CceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIY-KITQEQLKAKFEEK-GTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~-~~~~~~l~~~f~~~-g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
..|...+..+.+.. .|. ..+-++|..+.+.+ ..|..++|+++. ..++=.+.++|.+.++|..-...+||+.+
T Consensus 6 ~~~~~~~~~~~~l~-----vp~~~~~~d~l~~f~~~~~~~i~~~riird~-~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 6 DLPDERRSTLCCLA-----VPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCCCCCCceEEEEE-----eCcccccHHHHHHhhhcccccEEEEEEeeCC-CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34455556666655 555 44556666665555 367788888763 23777899999999999999999999987
Q ss_pred CC
Q psy3345 84 FS 85 (787)
Q Consensus 84 ~~ 85 (787)
..
T Consensus 80 ns 81 (110)
T PF07576_consen 80 NS 81 (110)
T ss_pred CC
Confidence 54
No 191
>KOG0804|consensus
Probab=92.26 E-value=0.43 Score=50.58 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=63.2
Q ss_pred CCCCCCCcc-cceEEEecCcccCCCccCCHHHHHHHhhccC-ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 3 NHLSGPVVP-RNHISLLDLDEVEFIYKITQEQLKAKFEEKG-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
+++|.+..+ +.-+.|.. .|..+|..||..|...+- .|.+++|++|..+ ++=.+.|+|.+.+||......|||
T Consensus 64 ~~~s~~~~~~~~mLcila-----VP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 64 SHSSLKNASSSTMLCILA-----VPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred cccccccCCCCcEEEEEe-----ccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCC
Confidence 344444444 67789999 999999999999999885 7899999996332 455789999999999999999999
Q ss_pred CccCC
Q psy3345 81 TYVFS 85 (787)
Q Consensus 81 ~~~~~ 85 (787)
+.|..
T Consensus 138 k~Fn~ 142 (493)
T KOG0804|consen 138 KQFNS 142 (493)
T ss_pred CcCCC
Confidence 98754
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.22 E-value=0.19 Score=47.86 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEecCCCC-C-CcceEEEEEEcCHHHHHHHHHHhCCcee
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEK-YGPL---AEVILPIDKET-D-KTKGFALVTFLMPEHATQAYQHLDGTVF 403 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~~~-~-~~~g~afV~F~~~~~A~~a~~~l~~~~~ 403 (787)
...|.||+||+.+|++++++.++. ++.. ..+.-...... + ....-|||.|.+.++...-...++|..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 458999999999999999987776 5554 22321111111 1 1234699999999999999998998766
No 193
>KOG2135|consensus
Probab=92.16 E-value=0.098 Score=55.46 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=57.3
Q ss_pred CCccC-CHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccCC
Q psy3345 25 FIYKI-TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNL 96 (787)
Q Consensus 25 lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 96 (787)
.|+.. |-.+|..||..||.|.+|.+-+. ---|.|+|.+.-+|-+|..- ++..|++|.|.|++-.+-
T Consensus 380 ~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 380 SPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhcc-ccceecCceeEEEEecCC
Confidence 44444 66899999999999999998775 34799999999999999887 999999999999999873
No 194
>KOG4285|consensus
Probab=90.95 E-value=0.61 Score=46.73 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCee-EEEEE
Q psy3345 447 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVP-LYLEW 517 (787)
Q Consensus 447 ~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~-l~v~~ 517 (787)
..=|.|-++|.... .-|..+|++||.|.+.....++.+-+|.|.+.-+|.+|+. -+|+.|.|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 45677888876543 4688899999999999988888999999999999999998 5888888754 34444
No 195
>KOG4285|consensus
Probab=90.83 E-value=0.41 Score=47.88 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=52.1
Q ss_pred CCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc-eEEEEEccC
Q psy3345 25 FIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS-RIKVEKCSN 95 (787)
Q Consensus 25 lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~-~i~v~~~~~ 95 (787)
.|...+ .=|-.+|+.||+|.+.... +.-.+-+|.|.+.-+|++||.+ ||..|+|. .|-|..|..
T Consensus 205 Fppg~~-s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 205 FPPGQV-SIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cCccch-hHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 887554 4566889999998776444 3346999999999999999999 99999996 778988875
No 196
>KOG2591|consensus
Probab=90.62 E-value=0.79 Score=49.77 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=55.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcc--CCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC--CeeCCeeEEEE
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEP--FGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAY--TKFKEVPLYLE 516 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~--~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~--~~~~g~~l~v~ 516 (787)
..+.|+++-||..+-.++++.+|+. +-.+.+|.+..+.+ =||.|.+..||+.|.+.|.. +.|.|++|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4578999999999999999999985 45566776655443 48999999999999998864 55777776543
No 197
>KOG2068|consensus
Probab=90.50 E-value=0.14 Score=52.42 Aligned_cols=84 Identities=12% Similarity=0.268 Sum_probs=64.2
Q ss_pred CCeEEecCCCCCCCHHHHH---HHHhhcCCeEEEEEeecCC-CCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q psy3345 580 DTTLYIKNLNFNSTEDSIR---RHFKKCGPIASVTVARKKD-PKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEH 655 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~-~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~ 655 (787)
..-+||-+|++...++.+. +.|.+||.|..+.+..+.. ....+ ...-++|.|...++|..||...+|..++|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~---~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSG---GTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCC---CCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 4567888899887766665 5789999999998887663 11111 112389999999999999999999999999
Q ss_pred EEEEEecCccc
Q psy3345 656 QIELKRSNRNL 666 (787)
Q Consensus 656 ~l~v~~~~~~~ 666 (787)
.|+..+...+.
T Consensus 154 ~lka~~gttky 164 (327)
T KOG2068|consen 154 ALKASLGTTKY 164 (327)
T ss_pred hhHHhhCCCcc
Confidence 98877765543
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.34 E-value=0.93 Score=35.14 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=44.8
Q ss_pred cCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 28 ~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
.++-+|++..+..|+- ++|. .+++ || ||.|.+-.+|+++....|++.+-+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677999999999964 5554 4433 44 99999999999999999999988887765
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.32 E-value=0.59 Score=44.71 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=45.9
Q ss_pred CHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc--cCccCCceEEEEEccC
Q psy3345 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN--NTYVFSSRIKVEKCSN 95 (787)
Q Consensus 30 ~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~--~~~~~~~~i~v~~~~~ 95 (787)
..+.|+++|..++.+.....+.. -+-..|.|.+.++|.+|...|+ +..+.|..+.|.++.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999998777766643 5678999999999999999999 8999999999999965
No 200
>KOG2068|consensus
Probab=90.03 E-value=0.14 Score=52.25 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=61.6
Q ss_pred eEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEecCCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 338 RIFVRNLSYTVTEDDLT---KLFEKYGPLAEVILPIDKE----TDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
-+||-+||..+..+.+. +.|.+||.|..|.+-.+.. .+.. .-+||+|...++|..||...+|..+.|+.++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 58888899887665554 4889999999998877652 1212 23899999999999999999999999999888
Q ss_pred eeCCCC
Q psy3345 411 IPGKPK 416 (787)
Q Consensus 411 ~~~~~~ 416 (787)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 201
>KOG2591|consensus
Probab=89.42 E-value=0.72 Score=50.05 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=56.1
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhcc--CceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc--CccCC
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEK--GTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN--TYVFS 85 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~--~~~~~ 85 (787)
..+--|+||- +|-+.-.|+++.||++- =.+.+|.+-.+ .-=||+|++..||+.|.++|.- +.|+|
T Consensus 173 ~kRcIvilRE-----Ipettp~e~Vk~lf~~encPk~iscefa~N------~nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 173 HKRCIVILRE-----IPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred cceeEEEEee-----cCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 3344478888 99999999999999983 47789999886 2469999999999999999864 47888
Q ss_pred ceEE
Q psy3345 86 SRIK 89 (787)
Q Consensus 86 ~~i~ 89 (787)
+.|.
T Consensus 242 KpIm 245 (684)
T KOG2591|consen 242 KPIM 245 (684)
T ss_pred cchh
Confidence 7664
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.96 E-value=1.6 Score=34.92 Aligned_cols=58 Identities=14% Similarity=0.336 Sum_probs=38.0
Q ss_pred cCCHHHHHHHhhccC-----ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEc
Q psy3345 28 KITQEQLKAKFEEKG-----TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKC 93 (787)
Q Consensus 28 ~~~~~~l~~~f~~~g-----~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 93 (787)
.++..+|..++...+ .|-+|.|.-+ |+||.-.. +.|..+++.|++..+.|++|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567789999998884 4667887765 99999877 6899999999999999999999876
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.57 E-value=1.6 Score=36.01 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=45.5
Q ss_pred EEEeecChHhHHHHHh--cCCcccCCeeEEEe--ecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCC
Q psy3345 261 AYIGFKDEKNCNKALN--KNKSFWKGKQLNIY--KYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAES 336 (787)
Q Consensus 261 afV~F~~~~~A~~Al~--~~~~~l~g~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (787)
|+|+|..+.-|+.-++ .+...+++..+.|. |+...... .-........
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~----------------------------k~qv~~~vs~ 52 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ----------------------------KFQVFSGVSK 52 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce----------------------------EEEEEEcccC
Confidence 7899999999999998 45666777666553 11110000 0011223456
Q ss_pred CeEEEcCCCCCCCHHHHHHH
Q psy3345 337 GRIFVRNLSYTVTEDDLTKL 356 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~ 356 (787)
++|.|.|||....+++|++.
T Consensus 53 rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 53 RTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEEeCCCCCCChhhheee
Confidence 78999999999999999864
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.51 E-value=1.2 Score=42.62 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=49.3
Q ss_pred CHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc--CCeeCCeeEEEEEecCc
Q psy3345 460 LPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA--YTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 460 t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~~~~~ 521 (787)
..+.|+.+|..|+.+..+...++=+-..|.|.+.+.|.+|...|+ +..+.|..+.+.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999999988888899999999999999999999 99999999999988433
No 205
>KOG2135|consensus
Probab=88.48 E-value=0.3 Score=51.95 Aligned_cols=73 Identities=23% Similarity=0.396 Sum_probs=59.2
Q ss_pred CeEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 337 GRIFVRNLSYTV-TEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 337 ~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
+.|-+.-.|+.. |..+|..+|.+||.|..|.+-.. .--|.|+|.+..+|-.|.. .++-.|++|.|+|.|.++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 445566666664 56789999999999999988433 3369999999999988875 799999999999999886
Q ss_pred C
Q psy3345 416 K 416 (787)
Q Consensus 416 ~ 416 (787)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.81 E-value=21 Score=36.23 Aligned_cols=188 Identities=13% Similarity=0.172 Sum_probs=114.6
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC--CCCCCCCCcccEEEEEeCCHHHHHHHH----HHhCC-
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKD--PKSPGQFLSMGYGFVQFYTRESLNQAL----KVLQN- 649 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~--~~~~~~~~s~G~afV~F~~~e~A~~A~----~~lng- 649 (787)
....+.|...|+..+++-..+...|-+||+|+++.++.+.+ .+............+.|-+.+.|..-. +.|+.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999998762 112222334567889999999875432 22322
Q ss_pred -CccCCeEEEEEecCccccchh--------h----hhhhccccccCCCCCEEEEecCCccCcHHH-HHHHH---HhcC--
Q psy3345 650 -SSLDEHQIELKRSNRNLESEA--------T----TVKRKSSNVAKQTGSKILVRNIPFQAKQSE-VEELF---KAFG-- 710 (787)
Q Consensus 650 -~~l~g~~l~v~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~l~V~nLp~~~t~~d-L~~~F---~~~G-- 710 (787)
..+....|.+.|..-...... . ...-..........+.|.|.=- ..+..++ +.+.+ ..=+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCc
Confidence 445666777766542111000 0 0001111223345677777533 3333333 22222 1113
Q ss_pred --CeeEEEecccc-CCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec--CceEEEEEcc
Q psy3345 711 --ELKFVRLPKKM-VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY--GRRLVLEWAE 765 (787)
Q Consensus 711 --~I~~v~i~~~~-~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~--Gr~l~v~~A~ 765 (787)
.|++|.|+.-- ....-+..||.+.|-+...|...+..+.....-. .+...|+.+.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 25777775431 1234567799999999999999999886322222 4788888775
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.17 E-value=6.8 Score=34.03 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=48.8
Q ss_pred CeEEecCCCCC-CCHHHHHHHHhhcC-CeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy3345 581 TTLYIKNLNFN-STEDSIRRHFKKCG-PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDE 654 (787)
Q Consensus 581 ~~l~V~NLp~~-~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g 654 (787)
..+.+--.|+. ++.++|..+.+.+- .|..++|.++.. .++-.+.+.|.+.++|..-...+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-------pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-------PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-------CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444445555 55566665555543 478899988764 366788999999999999999999988743
No 208
>KOG0804|consensus
Probab=85.36 E-value=4.3 Score=43.33 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=58.8
Q ss_pred CCeEEecCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy3345 580 DTTLYIKNLNFNSTEDSIRRHFKKCG-PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDE 654 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g 654 (787)
.+.|+|--+|-.++..+|..+...+- .|.++++++|.. .++-...|.|.+.++|..-...+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-------pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-------PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-------CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999988754 589999999765 245578999999999999999999988854
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.13 E-value=1.7 Score=35.89 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=46.3
Q ss_pred EEEEEcCHHHHHHHHHHhCC-ceeCCeEEEEe--eCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCC
Q psy3345 381 ALVTFLMPEHATQAYQHLDG-TVFLGRMLHLI--PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457 (787)
Q Consensus 381 afV~F~~~~~A~~a~~~l~~-~~~~g~~l~v~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~ 457 (787)
|.|+|....-|++.++.-.. ..+++..+.|. +....... .+ +.....+.++|+|.|||.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~-----------------k~-qv~~~vs~rtVlvsgip~ 62 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ-----------------KF-QVFSGVSKRTVLVSGIPD 62 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce-----------------EE-EEEEcccCCEEEEeCCCC
Confidence 68999999999999973221 24555555543 33321000 00 122345678999999999
Q ss_pred CCCHHHHHHhhc
Q psy3345 458 RTLPTDLKALFE 469 (787)
Q Consensus 458 ~~t~~~l~~~F~ 469 (787)
...+++|++...
T Consensus 63 ~l~ee~l~D~Le 74 (88)
T PF07292_consen 63 VLDEEELRDKLE 74 (88)
T ss_pred CCChhhheeeEE
Confidence 999999998654
No 210
>KOG4574|consensus
Probab=84.10 E-value=0.69 Score=52.80 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=63.3
Q ss_pred EEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeee--cCceEEEEEc
Q psy3345 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL--YGRRLVLEWA 764 (787)
Q Consensus 687 ~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~--~Gr~l~v~~A 764 (787)
+.++.|.+-..+-.-|-.+|+.||.|.+.+.+++. ..|.|+|.+.+.|..|+.+|. |+.+ -|-+.+|.||
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-------N~alvs~~s~~sai~a~dAl~-gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-------NMALVSFSSVESAILALDALQ-GKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-------cchhhhhHHHHHHHHhhhhhc-CCcccccCCceeEEec
Confidence 35578888889999999999999999999998884 479999999999999999996 5644 4889999999
Q ss_pred cccc
Q psy3345 765 EEAD 768 (787)
Q Consensus 765 ~~~~ 768 (787)
+.-.
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 8543
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.39 E-value=4.9 Score=31.20 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=44.3
Q ss_pred cCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 696 ~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.++-.|++..+..|+ ...|+. +. .| -||.|.+..+|.++....+ ++.+.+.+|.++
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~--d~------tG-fYIvF~~~~Ea~rC~~~~~-~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRD--DR------TG-FYIVFNDSKEAERCFRAED-GTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEe--cC------CE-EEEEECChHHHHHHHHhcC-CCEEEEEEEEeC
Confidence 468899999999998 544543 31 34 4899999999999999986 799998888763
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.91 E-value=0.81 Score=42.63 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=71.6
Q ss_pred CCHHhHHHhhcC----CCCcceeecccceEEEeecChHhHHHHHhcCCcccCCeeEEEeecccCCccccCCCcCCCCchh
Q psy3345 236 VKKKDLKAYFKP----LPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNAS 311 (787)
Q Consensus 236 ~te~di~~~F~~----~g~v~i~i~~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~ 311 (787)
.+-..|...+.. .+.+.++-+..+...+.|.+++++.+++....-.+.|..+.+.+|.+...+..
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~----------- 97 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSE----------- 97 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccc-----------
Confidence 445555555544 34445555588899999999999999999777777888888764432211100
Q ss_pred hhhhhhcccccccchhhhhcccCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEec
Q psy3345 312 MENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYT-VTEDDLTKLFEKYGPLAEVILPI 370 (787)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~ 370 (787)
........-|.|.|||.. .+++-++.+-+.+|.+..+....
T Consensus 98 ------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 98 ------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 000011235788899998 67778888999999999887643
No 213
>KOG4574|consensus
Probab=82.46 E-value=0.94 Score=51.76 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=64.9
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeC--CeeEEEEEecCccccccc
Q psy3345 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK--EVPLYLEWAPEGVFAEAK 527 (787)
Q Consensus 450 i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~~~~~~~~~~~ 527 (787)
..+.|.+-..+..-|..+|+.||.|.+....++-..|.|+|.+.+.|..|+.+|+|+.+. |-+.+|.++..-.|..++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPP 380 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCC
Confidence 334455666778889999999999999999888899999999999999999999998865 889999988665444433
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.11 E-value=4.2 Score=32.49 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=36.4
Q ss_pred ccCcHHHHHHHHHhcCC-----eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEc
Q psy3345 695 FQAKQSEVEELFKAFGE-----LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 695 ~~~t~~dL~~~F~~~G~-----I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A 764 (787)
..++..+|..++..-+. |-.++|..+ |+||+-.. +.|..+++.|+ +..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~---------~S~vev~~-~~a~~v~~~l~-~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN---------FSFVEVPE-EVAEKVLEALN-GKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS----------EEEEE-T-T-HHHHHHHHT-T--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee---------EEEEEECH-HHHHHHHHHhc-CCCCCCeeEEEEEC
Confidence 45788899988886644 455777555 79999877 47999999997 69999999999876
No 215
>KOG2253|consensus
Probab=81.00 E-value=1 Score=50.17 Aligned_cols=156 Identities=12% Similarity=0.191 Sum_probs=97.0
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
..+..++||+|+...+..+-+..+...||.|.++.... |||+.|..+..+.+|+..++-..++|..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 45567999999999999999999999999998887653 9999999999999999999999999988
Q ss_pred EEEEecCccccchhh----hhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEE
Q psy3345 657 IELKRSNRNLESEAT----TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 732 (787)
Q Consensus 657 l~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~af 732 (787)
+.+..-......... .......-.+....+-..+.|+|...........+.--+...+.+-.... .+....++|
T Consensus 103 l~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~--d~h~~e~~~ 180 (668)
T KOG2253|consen 103 LIENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEA--DDHCLELEK 180 (668)
T ss_pred hhccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHH--HHHHHHHHH
Confidence 877653221111000 00000000111114556678888877776666666544433333332221 222333444
Q ss_pred EEecCHHHHHHHHHHh
Q psy3345 733 VEFITKNEAKRAMKAL 748 (787)
Q Consensus 733 V~F~~~~~A~~Al~~l 748 (787)
-.|.+...+..+....
T Consensus 181 ~~~~s~~~~~~~~~~~ 196 (668)
T KOG2253|consen 181 TETESNSALSKEAESK 196 (668)
T ss_pred hhcccccccCcccccc
Confidence 4444444444444333
No 216
>KOG2253|consensus
Probab=76.66 E-value=2.1 Score=47.97 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=63.5
Q ss_pred ccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 678 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 678 ~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
..++.++..++||+|+-..+..+-++.+...+|.|.++.... |||..|..+..+.+|+..++ ...++|.
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~t-~~~~~~~ 101 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLLT-ELNIDDQ 101 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHhc-ccCCCcc
Confidence 445567888999999999999999999999999987664422 89999999999999999996 5888888
Q ss_pred eEEEEE
Q psy3345 758 RLVLEW 763 (787)
Q Consensus 758 ~l~v~~ 763 (787)
.|.+.-
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 887654
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.98 E-value=97 Score=31.66 Aligned_cols=188 Identities=15% Similarity=0.200 Sum_probs=111.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC-------------cEEEEEeCCHHHHHHHH----HHhc--CC
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-------------ITGLVEFLQKNQAKAAF----NSLA--YT 506 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-------------~~a~V~F~~~~~A~~A~----~~l~--~~ 506 (787)
..+.|+..|+..+++...+...|-.||+|++|.+.++. ....+-|-+.+.+..-. +.|. .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999997755 46899999988876543 3333 24
Q ss_pred eeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEec
Q psy3345 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIK 586 (787)
Q Consensus 507 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 586 (787)
.+....|.+.|..-+.-.....+. .+....... ...-...-.....+++|.|-
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~-------------------~~~~~~~~~--------~~~L~~~i~~~gATRSl~Ie 146 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPND-------------------EEADFSDYL--------VASLQYNIINRGATRSLAIE 146 (309)
T ss_pred hcCCcceeEEEEEEeccccccccc-------------------cccchhhHH--------hhhhhheeecCCcceEEEEE
Confidence 466778888887533110000000 000000000 00000011234456777775
Q ss_pred CCCCCCCHHHHHHHH---hhcCC----eEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccC-CeE
Q psy3345 587 NLNFNSTEDSIRRHF---KKCGP----IASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQ--NSSLD-EHQ 656 (787)
Q Consensus 587 NLp~~~t~~~L~~~F---~~~G~----v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~ln--g~~l~-g~~ 656 (787)
==.+-.+++-+.+.+ ..-+. ++++.++.... +...-+.-||.+.|-+..-|...+..+. +..++ .+.
T Consensus 147 F~~~~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~---~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc 223 (309)
T PF10567_consen 147 FKDPVDKDDLIEKKLPFLKNSNNKRYVLESIDLVNADE---PSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKC 223 (309)
T ss_pred ecCccchhHHHHHhhhhhccCCCceEEEEEEEEeccCc---ccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceE
Confidence 332222333333332 22232 67777776443 3345567899999999999999888764 33332 456
Q ss_pred EEEEecC
Q psy3345 657 IELKRSN 663 (787)
Q Consensus 657 l~v~~~~ 663 (787)
..|....
T Consensus 224 ~fVs~~~ 230 (309)
T PF10567_consen 224 FFVSVQP 230 (309)
T ss_pred EEEeccC
Confidence 6666554
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.18 E-value=7.1 Score=36.18 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHhh-cCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccch
Q psy3345 591 NSTEDSIRRHFKK-CGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESE 669 (787)
Q Consensus 591 ~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~ 669 (787)
..+-..|...+.. .+....+.+.. ...++..+.|.+.+++.+++. .....++|+.+.+..-.+.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~----------l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~ 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD----------LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPS 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE----------eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccc
Confidence 3556666666654 23332444443 234789999999999999988 44566778777776654332200
Q ss_pred hhhhhhccccccCCCCCEEEEecCCcc-CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEE
Q psy3345 670 ATTVKRKSSNVAKQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734 (787)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~ 734 (787)
.........-|.|.|||.. ++++-|+.+-+.+|.+..+..... ......|+-|.
T Consensus 97 --------~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~---~~~~~~~~Rv~ 151 (153)
T PF14111_consen 97 --------EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL---KRTRLDFARVR 151 (153)
T ss_pred --------ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC---CcccccEEEEE
Confidence 0011123455789999998 677889999999999988876444 12233356553
No 219
>KOG2318|consensus
Probab=72.83 E-value=16 Score=40.53 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=63.9
Q ss_pred cCCCCEEEEeCCCCC-CCHHHHHHhhccC----CCeeEEEecCC--------------C---------------------
Q psy3345 444 ARSKRIILVKNLPYR-TLPTDLKALFEPF----GDLGRVLVPPY--------------G--------------------- 483 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~--------------~--------------------- 483 (787)
...+..|-|.|+.++ +...||.-+|+.| |.|.+|.|-|+ .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999986 7889999888876 47888887420 0
Q ss_pred ------------------cEEEEEeCCHHHHHHHHHHhcCCeeC--CeeEEEEEecCcc
Q psy3345 484 ------------------ITGLVEFLQKNQAKAAFNSLAYTKFK--EVPLYLEWAPEGV 522 (787)
Q Consensus 484 ------------------~~a~V~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~~~~~~ 522 (787)
-||.|+|.+...|......+.|..|. +..+-+.|.|..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 15999999999999999999999998 6777888887664
No 220
>KOG2318|consensus
Probab=60.26 E-value=24 Score=39.19 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=62.3
Q ss_pred ccceEEEecCcccCCCc-cCCHHHHHHHhhcc----CceEEEEEEecCCCCcc---------------------------
Q psy3345 11 PRNHISLLDLDEVEFIY-KITQEQLKAKFEEK----GTVTDVQLKYTTEGKFR--------------------------- 58 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~-~~~~~~l~~~f~~~----g~i~~~~~~~~~~g~~~--------------------------- 58 (787)
++.|+-|.| |-| .+.-+||--+|+.| |.|..|.|....-|+.|
T Consensus 173 ~T~RLAVvN-----MDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 173 ETKRLAVVN-----MDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred ccceeeEec-----cccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 455666666 999 56899999999999 68999999876555422
Q ss_pred ---------------------eEEEEEecCHHHHHHHHHHhccCccCCceEEEEEc
Q psy3345 59 ---------------------RFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKC 93 (787)
Q Consensus 59 ---------------------g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 93 (787)
=||.|.|.+.+.|...++.|+|..+..+-..+.+-
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 37999999999999999999999988775555443
No 221
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=58.71 E-value=18 Score=28.40 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=48.5
Q ss_pred HHHHHHhhccC-ceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 32 EQLKAKFEEKG-TVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 32 ~~l~~~f~~~g-~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
++|++-|...| .|..|+=+.++ +++....-||..+...+...++ +=..+.|.+|.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 57888888888 78888888877 6777788899988877755544 44789999999998876
No 222
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.93 E-value=15 Score=32.32 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=33.2
Q ss_pred CCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 29 ~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
.+-++|++.|+.|..+ .|+.++++. ..+|+|.|.|.+.-..-+--.+|++.+
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT-EEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC-CCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 3558999999999874 688888755 578999999998665554444456554
No 223
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.39 E-value=21 Score=27.79 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHhhccC-ceEEEEEEecCCC-CcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 32 EQLKAKFEEKG-TVTDVQLKYTTEG-KFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 32 ~~l~~~f~~~g-~i~~~~~~~~~~g-~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
++|.+-|.+.| .+..|+-+.++++ .....=||.-....+-.. -|+=++++|++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899999 8899999998864 455666777766555444 4566889999999998765
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.77 E-value=33 Score=29.41 Aligned_cols=110 Identities=19% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCCeEEEEEecCcc
Q psy3345 588 LNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNS--SLDEHQIELKRSNRN 665 (787)
Q Consensus 588 Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~--~l~g~~l~v~~~~~~ 665 (787)
||+.++ .|-++|+.-|.|.++.....- . . ..|+-.++|. .++|. |.+.-....
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqy------------------p-d---ndal~~~~G~lE~vDg~-i~IGs~q~~ 65 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQY------------------P-D---NDALLYVHGTLEQVDGN-IRIGSGQTP 65 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEecc------------------C-C---chhhheeeeehhhccCc-EEEccCCCc
Confidence 676654 488999999999988655321 1 1 1244445553 34555 444322111
Q ss_pred ccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHH---hcCCeeEEEeccccCCCCCCceE---EEEEecC
Q psy3345 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFK---AFGELKFVRLPKKMVGSGLHRGF---GFVEFIT 737 (787)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~---~~G~I~~v~i~~~~~~~g~~~g~---afV~F~~ 737 (787)
.. ... .....+.++. =-|..+|-.+++++|+ .|-.|+.-.+.++ |.+.|. ||.-|..
T Consensus 66 ~s-----V~i----~gTPsgnnv~--F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd----GLP~GsYRiCFrL~~~ 128 (145)
T TIGR02542 66 AS-----VRI----QGTPSGNNVI--FPPYTLTYNELRQIFREPMVYQGITREQVQRD----GLPEGSYRICFRLFNA 128 (145)
T ss_pred cc-----EEE----ecCCCCCcee--cCceeeeHHHHHHHHhhhhhhccccHHHHhhc----CCCCCceEEEEEEecc
Confidence 00 000 0011122222 2477899999999998 4655766566665 445553 5555543
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=53.04 E-value=17 Score=31.93 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=31.5
Q ss_pred CEEEEecCCccC---------cHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHH-HHHHH
Q psy3345 686 SKILVRNIPFQA---------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA-KRAMK 746 (787)
Q Consensus 686 ~~l~V~nLp~~~---------t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A-~~Al~ 746 (787)
..+.|.|+|.+. +.+.|++.|+.|..++ ++.+.. ...++|+++|.|..--.. ..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~---~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYG---KQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEE---TTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcC---CCCCcEEEEEEECCChHHHHHHHH
Confidence 457788887654 4567999999998764 666555 235799999999864433 34443
No 226
>KOG4019|consensus
Probab=52.15 E-value=15 Score=34.50 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCEEEEeCCCCCC--C---HHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCe-eEEEEEecC
Q psy3345 447 KRIILVKNLPYRT--L---PTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEV-PLYLEWAPE 520 (787)
Q Consensus 447 ~~~i~v~nlp~~~--t---~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~-~l~v~~~~~ 520 (787)
.+.+++.+++..+ + .....++|.+|.......+.++.+...|.|.+++.|..|...++++.|.|. .+.+-++..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 3456777777654 2 233456777777766666677778889999999999999999999999988 777776654
Q ss_pred c
Q psy3345 521 G 521 (787)
Q Consensus 521 ~ 521 (787)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 227
>KOG4019|consensus
Probab=49.11 E-value=23 Score=33.25 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCEEEEecCCccCc-----HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc-e
Q psy3345 685 GSKILVRNIPFQAK-----QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR-R 758 (787)
Q Consensus 685 ~~~l~V~nLp~~~t-----~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr-~ 758 (787)
.+.+.+.+++..+- ......+|..|-.....++++- .+...|.|.++..|..|.-.+. ++.|.|+ .
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-------frrvRi~f~~p~~a~~a~i~~~-~~~f~~~~~ 81 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-------FRRVRINFSNPEAAADARIKLH-STSFNGKNE 81 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-------hceeEEeccChhHHHHHHHHhh-hcccCCCce
Confidence 34577777776642 2335566777766655566554 3567899999999999999995 7999998 9
Q ss_pred EEEEEcccc
Q psy3345 759 LVLEWAEEA 767 (787)
Q Consensus 759 l~v~~A~~~ 767 (787)
+..=||.+-
T Consensus 82 ~k~yfaQ~~ 90 (193)
T KOG4019|consen 82 LKLYFAQPG 90 (193)
T ss_pred EEEEEccCC
Confidence 999898854
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.64 E-value=60 Score=26.66 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=41.6
Q ss_pred CCccCCHHHHHHHhhcc-C-ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHH
Q psy3345 25 FIYKITQEQLKAKFEEK-G-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77 (787)
Q Consensus 25 lp~~~~~~~l~~~f~~~-g-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 77 (787)
....++..+|++.+..+ | .|.+|..+..+. ..-=|||++...++|.....+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHHHh
Confidence 66789999999999884 6 788998888753 345799999999999887655
No 229
>KOG4365|consensus
Probab=44.00 E-value=5 Score=42.50 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=66.3
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
-+.+.++.. ||...+++++.-+|..||.|.-+.+...- +|-..-.+||+-.+ .+|..+|..+..+.+.|..++
T Consensus 2 gs~~~~l~d-----~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r 75 (572)
T KOG4365|consen 2 GSMKKSLKD-----SVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDR 75 (572)
T ss_pred cchhhhHhh-----cccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhh
Confidence 356677888 99999999999999999998888777654 55567789998877 788999998888889999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.++..
T Consensus 76 ~~~~~~ 81 (572)
T KOG4365|consen 76 KAVSPS 81 (572)
T ss_pred hhcCch
Confidence 988875
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.45 E-value=51 Score=25.13 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=14.5
Q ss_pred HHHHHHhhccCceEEEEE
Q psy3345 32 EQLKAKFEEKGTVTDVQL 49 (787)
Q Consensus 32 ~~l~~~f~~~g~i~~~~~ 49 (787)
.+||++|+.+|+|.=+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999998765444
No 231
>KOG4410|consensus
Probab=41.05 E-value=24 Score=35.30 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=38.4
Q ss_pred ceEEEeCCCCCCCHHhHHHhhcCCCCcceeec---ccceEEEeecChH
Q psy3345 225 HTIVVKNLPAGVKKKDLKAYFKPLPLASVRTT---FLGMAYIGFKDEK 269 (787)
Q Consensus 225 ~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~---~~g~afV~F~~~~ 269 (787)
.-|+|.|||.++.-.||...+...+.+...|. +.|-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 44999999999999999999999988866665 7789999997643
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=40.07 E-value=82 Score=25.40 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=40.7
Q ss_pred CCccCCHHHHHHHhhcc-C-ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHH
Q psy3345 25 FIYKITQEQLKAKFEEK-G-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77 (787)
Q Consensus 25 lp~~~~~~~l~~~f~~~-g-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 77 (787)
.+..+|..+|++.++.+ | .|.+|..+..+. ..--|||++...++|...-.+
T Consensus 21 V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 21 VDRKATKGDIKRAVEKLFDVKVEKVNTLITPR--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CceEEEEEECCCCcHHHHHHh
Confidence 77899999999988874 6 688888887653 345799999999988876554
No 233
>KOG4483|consensus
Probab=38.11 E-value=41 Score=35.51 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=49.4
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCc--ceeecccceEEEeecChHhHHHHHhc
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLA--SVRTTFLGMAYIGFKDEKNCNKALNK 277 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v--~i~i~~~g~afV~F~~~~~A~~Al~~ 277 (787)
.=.++|-|-+.|.....+||...|..|+.- .|.++....||-.|.+...|..||.+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 356899999999999999999999999665 56666888999999999999999996
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=37.78 E-value=65 Score=25.23 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=46.1
Q ss_pred HHHHHHHHhcC-CeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 351 DDLTKLFEKYG-PLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 351 ~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
++|.+-|...| +|..++-+..+.++.+...-||++....+...++ +=..++|..+.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 46777787776 6888888877767778889999998877755544 33478888899877553
No 235
>KOG4483|consensus
Probab=37.70 E-value=34 Score=36.12 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=43.9
Q ss_pred CcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHH
Q psy3345 20 LDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77 (787)
Q Consensus 20 l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 77 (787)
|.+++.|.....+||-..|..||. .+++|..-. .--||-.|.+.--|..||..
T Consensus 394 lEIydfp~efkteDll~~f~~yq~-kgfdIkWvD----dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 394 LEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD----DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred eEeccCchhhccHHHHHHHHHhhc-CCceeEEee----cceeEEeecchHHHHHHhhc
Confidence 556669999999999999999975 677776622 34799999999999999986
No 236
>KOG2891|consensus
Probab=36.36 E-value=55 Score=32.66 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=30.3
Q ss_pred ccCCCCeEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEec
Q psy3345 332 DIAESGRIFVRNLSYT------------VTEDDLTKLFEKYGPLAEVILPI 370 (787)
Q Consensus 332 ~~~~~~~l~V~nLp~~------------~te~~l~~~F~~~G~i~~v~i~~ 370 (787)
+.....+||+.+||-. .+++-|+..|..||.|..|.|+.
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3444568888888742 46788999999999999988865
No 237
>KOG1295|consensus
Probab=33.93 E-value=38 Score=35.89 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=48.0
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccC-ceEEEEEEecC---CCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKG-TVTDVQLKYTT---EGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
-.+|.|+. ||...|+++|.+....|- .|.-..+.... .....+.|||-|..++|-..-...|+|..
T Consensus 7 ~~Kvv~rr-----lpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 7 KVKVVVRR-----LPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred ceeeeeec-----CCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 34677888 999999999999888873 23333333211 12357899999999999888888888763
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.65 E-value=1.1e+02 Score=23.34 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCeeEEEec
Q psy3345 699 QSEVEELFKAFGELKFVRLP 718 (787)
Q Consensus 699 ~~dL~~~F~~~G~I~~v~i~ 718 (787)
..+||++|+..|.|.-+.+-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36799999999999877763
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.02 E-value=51 Score=34.98 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=26.2
Q ss_pred EEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 61 AFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 61 afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
|||+|.+..+|+.|++.+.... ++.+.|..|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999644433 46668888876
No 240
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=76 Score=33.60 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=29.9
Q ss_pred EecCcccCCCc-cCCHHHHHHHhhcc----CceEEEEEEecCCCC
Q psy3345 17 LLDLDEVEFIY-KITQEQLKAKFEEK----GTVTDVQLKYTTEGK 56 (787)
Q Consensus 17 ~~~l~~~~lp~-~~~~~~l~~~f~~~----g~i~~~~~~~~~~g~ 56 (787)
-.+|-|+||-| .+...||-..|+.| |.|..|.|.-..-|+
T Consensus 146 tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGk 190 (622)
T COG5638 146 TKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGK 190 (622)
T ss_pred ccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhH
Confidence 34455666999 56889999999988 678888887655444
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.59 E-value=1.1e+02 Score=32.29 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=40.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHh
Q psy3345 630 GFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKA 708 (787)
Q Consensus 630 afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~ 708 (787)
|||.|++..+|..|++.+....- +.+.+..+.. ..-|...||.....+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe--------------------P~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE--------------------PDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC--------------------cccccccccCCChHHHHHHHHHHH
Confidence 79999999999999996544332 3345544432 234889999888777777777664
No 242
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.87 E-value=1.4e+02 Score=23.47 Aligned_cols=61 Identities=10% Similarity=0.212 Sum_probs=45.1
Q ss_pred HHHHHHHHhcC-CeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 351 DDLTKLFEKYG-PLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 351 ~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
++|.+-|...| ++..++-+....++.+...-+|+.....+-... |+=+.++|+.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---EeehhhCCeeEEEecCc
Confidence 46788888887 688888888877777888889988766544442 34457888888887654
No 243
>KOG4365|consensus
Probab=25.05 E-value=15 Score=39.07 Aligned_cols=78 Identities=4% Similarity=-0.083 Sum_probs=62.1
Q ss_pred CCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEc
Q psy3345 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 685 ~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A 764 (787)
+.+.++..+|..++++++.-+|..||.|.-+.+-+.. ..|...-.+||.-.+ .+|..+++.+. -..++|..+++..|
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~-~~~~~~v~~f~~~~~-~~~~~~i~~~k-~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYV-NGSLGEVTPFQHAKK-ANGPNYIQPQK-RQTTFESQDRKAVS 79 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccc-cCCcceeeeeeeeec-cCcccccCHHH-HhhhhhhhhhhhcC
Confidence 3456788999999999999999999999888876653 344455578888766 56888888886 47888999999888
Q ss_pred c
Q psy3345 765 E 765 (787)
Q Consensus 765 ~ 765 (787)
.
T Consensus 80 ~ 80 (572)
T KOG4365|consen 80 P 80 (572)
T ss_pred c
Confidence 6
No 244
>PF14893 PNMA: PNMA
Probab=24.29 E-value=62 Score=34.24 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=30.7
Q ss_pred ccceEEEeCCCCCCCHHhHHHhhcC----CCCccee--ec----ccceEEEeecC
Q psy3345 223 QYHTIVVKNLPAGVKKKDLKAYFKP----LPLASVR--TT----FLGMAYIGFKD 267 (787)
Q Consensus 223 ~~~~v~v~nLp~~~te~di~~~F~~----~g~v~i~--i~----~~g~afV~F~~ 267 (787)
..+.|.|.|||.+|++.+|.+.+.. +|...|. +. ....|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 4678999999999999999876654 3443221 11 33567777765
No 245
>KOG2891|consensus
Probab=23.32 E-value=64 Score=32.18 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhccCceEEEEEEe-cC-----CCCcceEEEEEe
Q psy3345 29 ITQEQLKAKFEEKGTVTDVQLKY-TT-----EGKFRRFAFIGY 65 (787)
Q Consensus 29 ~~~~~l~~~f~~~g~i~~~~~~~-~~-----~g~~~g~afv~f 65 (787)
-+|+.|+..|..||.|-.|.|++ |+ +|+..|.-|-+|
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 47899999999999999998876 22 566544444333
No 246
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=22.21 E-value=1.6e+02 Score=32.50 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=41.7
Q ss_pred HHHHHHhhc----cCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccC
Q psy3345 32 EQLKAKFEE----KGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT 81 (787)
Q Consensus 32 ~~l~~~f~~----~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~ 81 (787)
-||..+|-+ +|.|+.+.|-..+--..+...++.|.+.++|.+|+..+-..
T Consensus 147 ~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~ 200 (413)
T TIGR00387 147 YDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA 200 (413)
T ss_pred CChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc
Confidence 478888865 78999999998876677788899999999999999776543
Done!