Query psy3345
Match_columns 787
No_of_seqs 518 out of 4207
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:38:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 5.9E-41 2E-45 351.1 34.6 257 443-778 18-276 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 5.9E-40 2E-44 345.0 28.2 249 443-767 37-291 (292)
3 3smz_A Protein raver-1, ribonu 100.0 1.2E-37 4.2E-42 326.0 31.0 241 333-667 19-266 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 7.3E-38 2.5E-42 329.0 29.2 248 332-665 37-291 (292)
5 4f02_A Polyadenylate-binding p 100.0 7.3E-32 2.5E-36 268.7 20.1 175 577-772 12-186 (213)
6 3md3_A Nuclear and cytoplasmic 100.0 2E-30 6.9E-35 248.0 21.3 166 581-766 1-166 (166)
7 1b7f_A Protein (SXL-lethal pro 100.0 7.5E-30 2.6E-34 244.6 21.1 165 579-764 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 1.7E-29 5.8E-34 241.8 22.2 164 580-764 2-167 (167)
9 1l3k_A Heterogeneous nuclear r 100.0 2.1E-29 7.2E-34 248.1 21.0 179 577-772 10-188 (196)
10 2qfj_A FBP-interacting repress 100.0 3.4E-29 1.2E-33 250.7 20.1 179 580-768 28-206 (216)
11 2cjk_A Nuclear polyadenylated 100.0 8.5E-30 2.9E-34 244.0 14.8 166 579-768 2-167 (167)
12 3nmr_A Cugbp ELAV-like family 100.0 7.3E-29 2.5E-33 239.4 20.8 168 579-765 2-175 (175)
13 4f02_A Polyadenylate-binding p 100.0 2.4E-28 8.1E-33 243.3 21.0 166 333-521 12-181 (213)
14 3tyt_A Heterogeneous nuclear r 100.0 4.8E-28 1.6E-32 238.1 20.1 172 579-764 3-204 (205)
15 2g4b_A Splicing factor U2AF 65 100.0 7.3E-28 2.5E-32 231.7 19.4 159 579-765 3-172 (172)
16 1fje_B Nucleolin RBD12, protei 100.0 1.9E-28 6.4E-33 236.5 13.2 166 576-767 9-174 (175)
17 2yh0_A Splicing factor U2AF 65 100.0 2.3E-27 8E-32 233.8 20.0 177 579-769 3-196 (198)
18 1b7f_A Protein (SXL-lethal pro 100.0 3.1E-27 1.1E-31 226.3 20.2 159 335-518 2-168 (168)
19 3md3_A Nuclear and cytoplasmic 99.9 5.2E-27 1.8E-31 224.2 19.9 159 337-519 1-165 (166)
20 1fxl_A Paraneoplastic encephal 99.9 1E-26 3.5E-31 222.4 21.5 158 336-518 2-167 (167)
21 2adc_A Polypyrimidine tract-bi 99.9 1.4E-26 4.9E-31 233.2 21.5 175 576-767 30-228 (229)
22 3sde_A Paraspeckle component 1 99.9 7.6E-27 2.6E-31 240.0 19.3 160 577-769 19-181 (261)
23 3pgw_A U1-A; protein-RNA compl 99.9 2.7E-26 9.3E-31 239.5 22.5 175 577-766 6-282 (282)
24 1l3k_A Heterogeneous nuclear r 99.9 2.5E-26 8.5E-31 226.1 19.2 168 220-417 9-184 (196)
25 1qm9_A Polypyrimidine tract-bi 99.9 1.2E-26 4.2E-31 228.6 16.4 171 580-767 3-197 (198)
26 2qfj_A FBP-interacting repress 99.9 5.3E-26 1.8E-30 227.4 20.6 174 334-521 26-205 (216)
27 3nmr_A Cugbp ELAV-like family 99.9 3.9E-26 1.3E-30 220.2 18.4 160 335-518 2-174 (175)
28 2g4b_A Splicing factor U2AF 65 99.9 8.6E-26 2.9E-30 217.1 19.8 159 446-663 3-172 (172)
29 2cjk_A Nuclear polyadenylated 99.9 3.1E-26 1E-30 219.1 15.3 159 335-521 2-166 (167)
30 3tyt_A Heterogeneous nuclear r 99.9 3.1E-25 1.1E-29 218.0 20.5 194 446-662 3-204 (205)
31 2yh0_A Splicing factor U2AF 65 99.9 4.2E-25 1.4E-29 217.6 20.8 182 446-666 3-195 (198)
32 1fje_B Nucleolin RBD12, protei 99.9 8.7E-26 3E-30 217.8 13.8 164 332-521 9-174 (175)
33 2adc_A Polypyrimidine tract-bi 99.9 1.8E-24 6E-29 217.8 22.9 185 332-521 30-228 (229)
34 3pgw_A U1-A; protein-RNA compl 99.9 1.4E-24 4.9E-29 226.4 21.5 184 333-519 6-281 (282)
35 1qm9_A Polypyrimidine tract-bi 99.9 1.7E-24 5.8E-29 213.2 18.0 182 335-521 2-197 (198)
36 3sde_A Paraspeckle component 1 99.9 5.9E-24 2E-28 218.5 20.1 158 444-666 19-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 8.2E-21 2.8E-25 179.2 15.8 150 609-768 2-151 (158)
38 2i2y_A Fusion protein consists 99.8 4.5E-20 1.5E-24 172.3 12.3 136 625-768 11-149 (150)
39 4f25_A Polyadenylate-binding p 99.8 1.6E-19 5.4E-24 159.9 11.0 109 579-700 4-112 (115)
40 4fxv_A ELAV-like protein 1; RN 99.8 4.7E-19 1.6E-23 151.8 11.4 82 683-766 17-98 (99)
41 2kn4_A Immunoglobulin G-bindin 99.8 9E-19 3.1E-23 165.2 13.9 137 257-416 12-150 (158)
42 4f25_A Polyadenylate-binding p 99.8 9.5E-19 3.3E-23 154.9 11.3 108 336-462 5-112 (115)
43 2lxi_A RNA-binding protein 10; 99.8 3.7E-19 1.3E-23 150.1 6.7 84 685-769 1-85 (91)
44 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-18 5.9E-23 148.3 10.8 80 11-95 18-98 (99)
45 3s8s_A Histone-lysine N-methyl 99.7 1.3E-17 4.3E-22 145.8 13.4 89 683-773 4-92 (110)
46 3s8s_A Histone-lysine N-methyl 99.7 1.3E-17 4.3E-22 145.8 11.3 82 9-95 3-85 (110)
47 2lxi_A RNA-binding protein 10; 99.7 2.6E-18 8.7E-23 144.9 6.5 79 12-95 1-82 (91)
48 2i2y_A Fusion protein consists 99.7 3.4E-17 1.2E-21 152.7 12.4 135 483-665 13-148 (150)
49 2lkz_A RNA-binding protein 5; 99.7 1.4E-17 4.9E-22 140.7 8.8 82 683-766 7-94 (95)
50 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.1E-17 1.1E-21 137.5 10.6 84 7-95 1-85 (87)
51 1whw_A Hypothetical protein ri 99.7 7.5E-17 2.6E-21 138.8 11.9 86 6-96 2-88 (99)
52 3md1_A Nuclear and cytoplasmic 99.7 7.1E-17 2.4E-21 134.0 11.0 82 685-768 1-82 (83)
53 2lkz_A RNA-binding protein 5; 99.7 1.7E-17 5.7E-22 140.3 7.2 78 13-95 10-94 (95)
54 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.1E-17 2.8E-21 135.0 10.8 83 683-767 4-86 (87)
55 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.1E-22 151.4 6.6 124 628-768 5-128 (135)
56 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.1E-17 2.1E-21 135.0 9.6 83 7-94 2-85 (85)
57 1sjq_A Polypyrimidine tract-bi 99.7 5.1E-17 1.8E-21 138.4 9.2 80 682-768 13-93 (105)
58 3ns6_A Eukaryotic translation 99.7 3E-17 1E-21 141.2 7.8 85 684-770 5-96 (100)
59 2do4_A Squamous cell carcinoma 99.7 1.5E-16 5.2E-21 137.1 12.3 84 7-95 12-95 (100)
60 3p5t_L Cleavage and polyadenyl 99.7 2.5E-17 8.7E-22 138.8 7.1 77 14-95 3-82 (90)
61 2x1f_A MRNA 3'-END-processing 99.7 2.1E-16 7.3E-21 135.0 12.6 86 684-771 1-86 (96)
62 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-16 3.6E-21 136.7 10.7 84 5-95 2-89 (96)
63 3r27_A HnRNP L, heterogeneous 99.7 1.3E-16 4.4E-21 134.5 10.8 80 681-768 17-98 (100)
64 1wez_A HnRNP H', FTP-3, hetero 99.7 6.6E-17 2.3E-21 139.3 9.1 82 7-95 10-91 (102)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.5E-16 5.1E-21 132.6 10.8 82 682-765 4-85 (85)
66 2dnz_A Probable RNA-binding pr 99.7 2.3E-16 7.9E-21 134.6 12.2 83 9-96 2-85 (95)
67 2la6_A RNA-binding protein FUS 99.7 1.7E-16 5.9E-21 136.4 11.4 86 4-94 5-99 (99)
68 2dnn_A RNA-binding protein 12; 99.7 9.8E-17 3.3E-21 139.3 9.9 76 13-95 17-92 (109)
69 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.2E-16 4.2E-21 151.3 11.3 136 632-769 11-154 (165)
70 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.3E-21 128.5 9.7 75 684-766 6-80 (89)
71 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-16 5.2E-21 135.4 10.3 85 5-94 9-94 (94)
72 2jrs_A RNA-binding protein 39; 99.7 2.2E-16 7.4E-21 137.8 11.4 84 7-95 21-105 (108)
73 1whw_A Hypothetical protein ri 99.7 2.9E-16 1E-20 135.0 12.1 86 682-769 5-90 (99)
74 2dgs_A DAZ-associated protein 99.7 3E-16 1E-20 135.0 12.2 85 5-95 3-88 (99)
75 1x5s_A Cold-inducible RNA-bind 99.7 1.9E-16 6.4E-21 137.1 10.7 86 5-95 5-91 (102)
76 2cqc_A Arginine/serine-rich sp 99.7 2.7E-16 9.3E-21 134.2 11.6 85 6-95 9-94 (95)
77 2dnz_A Probable RNA-binding pr 99.7 2.7E-16 9.2E-21 134.2 11.5 85 683-769 3-87 (95)
78 2do4_A Squamous cell carcinoma 99.7 3.2E-16 1.1E-20 135.0 12.0 85 681-768 13-97 (100)
79 2div_A TRNA selenocysteine ass 99.7 1.7E-16 5.7E-21 136.6 10.1 86 5-95 2-93 (99)
80 3ns6_A Eukaryotic translation 99.7 7.1E-17 2.4E-21 138.8 7.6 83 8-95 2-92 (100)
81 2ywk_A Putative RNA-binding pr 99.7 2.1E-16 7.2E-21 134.8 10.4 83 8-95 12-94 (95)
82 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.5E-21 128.9 8.5 79 7-95 2-80 (89)
83 2dgw_A Probable RNA-binding pr 99.7 3.1E-16 1.1E-20 132.5 11.3 82 7-95 5-86 (91)
84 2jrs_A RNA-binding protein 39; 99.7 2E-16 6.9E-21 138.0 10.3 87 681-769 22-108 (108)
85 2hgl_A HNRPF protein, heteroge 99.7 9.2E-17 3.1E-21 145.2 8.3 80 10-95 42-124 (136)
86 3md1_A Nuclear and cytoplasmic 99.7 2.9E-16 1E-20 130.2 10.7 78 13-95 2-80 (83)
87 2x1f_A MRNA 3'-END-processing 99.7 1.9E-16 6.5E-21 135.3 9.8 80 11-95 1-81 (96)
88 2dgs_A DAZ-associated protein 99.7 3.8E-16 1.3E-20 134.3 11.7 85 682-769 7-91 (99)
89 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-16 7.2E-21 140.1 10.4 105 577-711 5-109 (115)
90 1wg5_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 138.1 9.1 82 8-95 11-93 (104)
91 2dgv_A HnRNP M, heterogeneous 99.7 3.2E-16 1.1E-20 132.8 11.0 84 6-95 2-85 (92)
92 2e5h_A Zinc finger CCHC-type a 99.7 3.3E-16 1.1E-20 133.3 11.0 83 681-765 12-94 (94)
93 2dgo_A Cytotoxic granule-assoc 99.7 8.9E-16 3E-20 136.0 14.1 84 8-96 11-95 (115)
94 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.3E-16 7.9E-21 136.5 10.0 87 4-95 4-91 (102)
95 1p27_B RNA-binding protein 8A; 99.7 3.8E-16 1.3E-20 136.2 11.5 81 10-95 21-102 (106)
96 1s79_A Lupus LA protein; RRM, 99.7 1.8E-16 6.2E-21 136.5 9.0 81 9-95 8-88 (103)
97 1x5u_A Splicing factor 3B subu 99.7 4.4E-16 1.5E-20 135.5 11.6 86 5-95 8-94 (105)
98 2d9p_A Polyadenylate-binding p 99.7 6.6E-16 2.3E-20 133.9 12.6 84 6-95 9-92 (103)
99 2cqc_A Arginine/serine-rich sp 99.7 4E-16 1.4E-20 133.1 11.1 84 681-766 11-94 (95)
100 1x5u_A Splicing factor 3B subu 99.7 4.2E-16 1.4E-20 135.7 11.3 87 681-769 11-97 (105)
101 2db1_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 141.3 8.5 80 10-95 15-97 (118)
102 1x4d_A Matrin 3; structural ge 99.7 1.8E-16 6.3E-21 135.2 8.7 81 682-769 12-94 (102)
103 2cph_A RNA binding motif prote 99.7 5.3E-16 1.8E-20 135.6 11.8 89 681-769 11-99 (107)
104 2cpz_A CUG triplet repeat RNA- 99.7 5.6E-16 1.9E-20 137.3 12.1 82 10-96 23-105 (115)
105 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.7E-16 1.3E-20 135.2 10.6 86 682-769 9-94 (102)
106 2la6_A RNA-binding protein FUS 99.7 4.5E-16 1.5E-20 133.8 11.1 84 680-765 8-99 (99)
107 2cq1_A PTB-like protein L; RRM 99.7 4.6E-16 1.6E-20 133.0 10.9 81 681-768 11-92 (101)
108 1x5s_A Cold-inducible RNA-bind 99.7 4.3E-16 1.5E-20 134.8 11.0 86 682-769 9-94 (102)
109 2dnh_A Bruno-like 5, RNA bindi 99.7 7.7E-16 2.6E-20 134.0 12.6 81 10-95 13-96 (105)
110 1x5t_A Splicing factor 3B subu 99.7 2.7E-16 9.4E-21 134.4 9.5 85 683-769 3-88 (96)
111 2dha_A FLJ20171 protein; RRM d 99.7 6.8E-17 2.3E-21 143.3 5.8 79 11-95 22-104 (123)
112 3p5t_L Cleavage and polyadenyl 99.7 9.3E-17 3.2E-21 135.3 6.3 81 686-768 2-84 (90)
113 2cq0_A Eukaryotic translation 99.7 6.7E-16 2.3E-20 133.8 11.8 82 9-95 12-94 (103)
114 1p27_B RNA-binding protein 8A; 99.6 4.4E-16 1.5E-20 135.8 10.7 86 681-768 19-104 (106)
115 2cpz_A CUG triplet repeat RNA- 99.6 4.5E-16 1.6E-20 137.9 10.9 86 682-769 22-107 (115)
116 2fy1_A RNA-binding motif prote 99.6 6E-16 2E-20 136.9 11.5 81 10-95 5-85 (116)
117 1oo0_B CG8781-PA, drosophila Y 99.6 5.8E-16 2E-20 136.0 11.4 86 681-768 22-107 (110)
118 2cq0_A Eukaryotic translation 99.6 4E-16 1.4E-20 135.2 10.2 86 682-769 12-97 (103)
119 2dgo_A Cytotoxic granule-assoc 99.6 7E-16 2.4E-20 136.7 11.9 87 681-769 11-97 (115)
120 2dnh_A Bruno-like 5, RNA bindi 99.6 6.2E-16 2.1E-20 134.6 11.4 85 682-769 12-99 (105)
121 2cpf_A RNA binding motif prote 99.6 5.9E-16 2E-20 132.8 11.0 81 10-95 3-87 (98)
122 1sjq_A Polypyrimidine tract-bi 99.6 1.8E-16 6.3E-21 135.0 7.5 82 4-95 8-91 (105)
123 2dgv_A HnRNP M, heterogeneous 99.6 4.9E-16 1.7E-20 131.7 10.2 83 682-768 5-87 (92)
124 2dhg_A TRNA selenocysteine ass 99.6 7.1E-16 2.4E-20 134.0 11.4 84 8-96 5-90 (104)
125 2dnm_A SRP46 splicing factor; 99.6 6E-16 2.1E-20 134.1 10.9 82 9-95 10-92 (103)
126 1x4h_A RNA-binding protein 28; 99.6 8E-16 2.7E-20 135.4 11.8 83 9-96 12-101 (111)
127 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.3E-15 4.3E-20 132.1 12.9 85 681-769 11-95 (103)
128 3ulh_A THO complex subunit 4; 99.6 6.3E-16 2.1E-20 135.1 11.0 83 7-94 24-106 (107)
129 1x5t_A Splicing factor 3B subu 99.6 3.6E-16 1.2E-20 133.7 9.2 81 10-95 3-85 (96)
130 2cq3_A RNA-binding protein 9; 99.6 1.4E-15 4.7E-20 131.8 13.1 84 6-95 9-92 (103)
131 2dnm_A SRP46 splicing factor; 99.6 4.7E-16 1.6E-20 134.8 10.0 85 682-768 10-94 (103)
132 2dgp_A Bruno-like 4, RNA bindi 99.6 6.2E-16 2.1E-20 134.8 10.8 87 681-769 9-98 (106)
133 1x4h_A RNA-binding protein 28; 99.6 9.7E-16 3.3E-20 134.9 12.1 88 681-769 11-103 (111)
134 2ad9_A Polypyrimidine tract-bi 99.6 4.6E-16 1.6E-20 136.2 9.8 81 681-768 27-108 (119)
135 1wi8_A EIF-4B, eukaryotic tran 99.6 6.2E-16 2.1E-20 134.3 10.6 87 680-769 10-96 (104)
136 1p1t_A Cleavage stimulation fa 99.6 4.4E-16 1.5E-20 135.3 9.6 90 684-775 7-96 (104)
137 2cpf_A RNA binding motif prote 99.6 6.2E-16 2.1E-20 132.7 10.3 86 683-769 3-90 (98)
138 4a8x_A RNA-binding protein wit 99.6 5.4E-16 1.8E-20 130.2 9.6 84 684-768 3-86 (88)
139 4a8x_A RNA-binding protein wit 99.6 4.5E-16 1.6E-20 130.7 9.1 81 10-95 2-84 (88)
140 2dng_A Eukaryotic translation 99.6 1.3E-15 4.4E-20 132.0 12.2 83 6-95 9-92 (103)
141 2dgx_A KIAA0430 protein; RRM d 99.6 1.2E-15 4E-20 130.2 11.7 83 682-769 6-92 (96)
142 2d9p_A Polyadenylate-binding p 99.6 6.3E-16 2.1E-20 134.0 10.2 85 681-769 11-95 (103)
143 3ucg_A Polyadenylate-binding p 99.6 3.9E-16 1.3E-20 131.4 8.4 80 10-95 4-84 (89)
144 2cph_A RNA binding motif prote 99.6 1.3E-15 4.4E-20 133.1 12.0 83 8-95 11-96 (107)
145 2kt5_A RNA and export factor-b 99.6 1.2E-15 4E-20 137.2 12.0 83 8-95 31-113 (124)
146 2cq3_A RNA-binding protein 9; 99.6 1.6E-15 5.6E-20 131.4 12.5 86 680-769 10-95 (103)
147 1oo0_B CG8781-PA, drosophila Y 99.6 7E-16 2.4E-20 135.5 10.3 82 9-95 23-105 (110)
148 2ywk_A Putative RNA-binding pr 99.6 7E-16 2.4E-20 131.6 9.9 82 682-766 13-94 (95)
149 2cqp_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 134.0 8.3 82 9-95 12-94 (98)
150 2ek1_A RNA-binding protein 12; 99.6 2.4E-16 8.2E-21 134.5 6.9 82 9-95 12-94 (95)
151 2lmi_A GRSF-1, G-rich sequence 99.6 1.2E-16 4.2E-21 139.3 5.2 85 5-95 4-91 (107)
152 3s7r_A Heterogeneous nuclear r 99.6 1.1E-15 3.6E-20 128.0 10.6 81 7-93 6-87 (87)
153 1s79_A Lupus LA protein; RRM, 99.6 4.2E-16 1.4E-20 134.2 8.3 80 683-766 9-88 (103)
154 2div_A TRNA selenocysteine ass 99.6 6.5E-16 2.2E-20 132.9 9.5 86 681-768 5-95 (99)
155 2kxn_B Transformer-2 protein h 99.6 6.1E-16 2.1E-20 139.4 9.7 83 8-95 42-125 (129)
156 2cpy_A RNA-binding protein 12; 99.6 3E-16 1E-20 138.5 7.5 82 8-95 11-93 (114)
157 2dng_A Eukaryotic translation 99.6 9.3E-16 3.2E-20 132.9 10.4 86 680-769 10-95 (103)
158 3r27_A HnRNP L, heterogeneous 99.6 1E-15 3.5E-20 128.9 10.2 79 7-95 16-96 (100)
159 2a3j_A U1 small nuclear ribonu 99.6 7.2E-16 2.4E-20 137.7 9.9 85 681-770 25-113 (127)
160 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-15 4.4E-20 132.2 11.2 83 6-95 9-93 (104)
161 2nlw_A Eukaryotic translation 99.6 9.4E-16 3.2E-20 133.2 10.3 84 682-769 12-102 (105)
162 2do0_A HnRNP M, heterogeneous 99.6 1.6E-15 5.4E-20 134.2 11.9 82 9-95 12-93 (114)
163 2fy1_A RNA-binding motif prote 99.6 1.2E-15 4E-20 135.0 10.8 83 683-768 5-87 (116)
164 2cqd_A RNA-binding region cont 99.6 1.3E-15 4.5E-20 135.1 11.1 84 7-96 12-96 (116)
165 1x4f_A Matrin 3; structural ge 99.6 5.2E-16 1.8E-20 134.3 8.2 82 682-770 22-105 (112)
166 2dis_A Unnamed protein product 99.6 8.1E-16 2.8E-20 134.9 9.6 87 683-770 6-95 (109)
167 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-15 3.5E-20 140.7 10.7 86 682-769 39-124 (139)
168 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.5E-15 8.6E-20 130.2 12.6 81 9-95 12-92 (103)
169 2hgm_A HNRPF protein, heteroge 99.6 3.3E-16 1.1E-20 139.1 7.1 81 8-95 38-120 (126)
170 3n9u_C Cleavage and polyadenyl 99.6 8.3E-16 2.8E-20 143.2 10.0 80 11-95 54-136 (156)
171 2dgp_A Bruno-like 4, RNA bindi 99.6 9.8E-16 3.4E-20 133.6 9.8 86 5-95 6-95 (106)
172 2kxn_B Transformer-2 protein h 99.6 7.3E-16 2.5E-20 138.9 9.2 86 681-768 42-127 (129)
173 2err_A Ataxin-2-binding protei 99.6 1.1E-15 3.7E-20 133.7 10.0 84 680-767 24-107 (109)
174 2mss_A Protein (musashi1); RNA 99.6 3.6E-16 1.2E-20 126.8 6.4 74 14-93 1-75 (75)
175 3pgw_S U1-70K; protein-RNA com 99.6 1.4E-16 4.8E-21 174.0 5.1 172 596-769 8-184 (437)
176 3n9u_C Cleavage and polyadenyl 99.6 1.4E-15 4.9E-20 141.6 11.2 83 684-768 54-138 (156)
177 3ulh_A THO complex subunit 4; 99.6 2E-15 6.7E-20 131.9 11.2 82 681-765 25-106 (107)
178 2dhg_A TRNA selenocysteine ass 99.6 1E-15 3.4E-20 133.0 9.2 85 682-769 6-92 (104)
179 2cpe_A RNA-binding protein EWS 99.6 1.5E-15 5.3E-20 134.0 10.6 87 681-769 11-105 (113)
180 1wex_A Hypothetical protein (r 99.6 1.7E-15 5.7E-20 130.4 10.4 81 682-769 12-93 (104)
181 2dgw_A Probable RNA-binding pr 99.6 2.3E-15 7.8E-20 127.1 11.1 82 682-768 7-88 (91)
182 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.3E-16 1.5E-20 134.0 6.7 84 682-768 16-99 (100)
183 2mss_A Protein (musashi1); RNA 99.6 6E-16 2E-20 125.5 7.1 75 687-764 1-75 (75)
184 1x4d_A Matrin 3; structural ge 99.6 1.3E-15 4.6E-20 129.8 9.5 78 8-95 11-91 (102)
185 2khc_A Testis-specific RNP-typ 99.6 1.1E-15 3.6E-20 136.2 9.3 80 10-94 38-118 (118)
186 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4E-20 135.9 9.4 82 682-765 37-118 (118)
187 1x4e_A RNA binding motif, sing 99.6 3.7E-16 1.3E-20 130.2 5.7 81 9-94 2-83 (85)
188 3s7r_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 124.7 11.8 80 333-413 8-87 (87)
189 1p1t_A Cleavage stimulation fa 99.6 1E-15 3.4E-20 133.0 8.6 80 11-95 7-87 (104)
190 2m2b_A RNA-binding protein 10; 99.6 5E-16 1.7E-20 140.9 6.9 86 680-768 18-109 (131)
191 2cqd_A RNA-binding region cont 99.6 2.3E-15 7.9E-20 133.5 11.1 87 680-769 12-98 (116)
192 2do0_A HnRNP M, heterogeneous 99.6 3.1E-15 1.1E-19 132.2 11.7 85 681-768 11-95 (114)
193 3ex7_B RNA-binding protein 8A; 99.6 2.1E-15 7.3E-20 136.0 10.7 88 680-769 17-104 (126)
194 1x4a_A Splicing factor, argini 99.6 3.5E-15 1.2E-19 130.7 11.8 82 682-768 19-100 (109)
195 2err_A Ataxin-2-binding protei 99.6 1.3E-15 4.5E-20 133.1 8.8 83 7-95 24-106 (109)
196 2cpi_A CCR4-NOT transcription 99.6 1.5E-15 5E-20 133.4 9.1 85 6-95 9-100 (111)
197 2dh8_A DAZ-associated protein 99.6 1.8E-15 6.2E-20 131.6 9.6 81 9-95 13-94 (105)
198 2cpy_A RNA-binding protein 12; 99.6 9.7E-16 3.3E-20 135.3 7.9 85 682-770 12-97 (114)
199 2j76_E EIF-4B, EIF4B, eukaryot 99.6 5.8E-16 2E-20 133.2 6.1 81 8-95 15-97 (100)
200 2nlw_A Eukaryotic translation 99.6 1.8E-15 6.3E-20 131.3 9.3 81 9-95 12-99 (105)
201 3ucg_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 125.1 11.1 80 336-416 6-85 (89)
202 3ex7_B RNA-binding protein 8A; 99.6 2.1E-15 7.3E-20 136.0 10.0 84 8-96 18-102 (126)
203 2rs2_A Musashi-1, RNA-binding 99.6 2.3E-15 7.9E-20 131.5 9.8 85 682-769 22-106 (109)
204 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.9E-20 131.0 7.7 84 682-767 12-95 (98)
205 1wel_A RNA-binding protein 12; 99.6 8.4E-16 2.9E-20 138.0 7.2 83 7-95 20-103 (124)
206 2jvr_A Nucleolar protein 3; RN 99.6 1.1E-15 3.8E-20 132.8 7.7 80 8-95 24-104 (111)
207 2cpe_A RNA-binding protein EWS 99.6 2.5E-15 8.7E-20 132.6 10.1 81 10-95 13-102 (113)
208 2hgn_A Heterogeneous nuclear r 99.6 2.7E-16 9.1E-21 142.6 3.8 79 10-95 44-122 (139)
209 2cqg_A TDP-43, TAR DNA-binding 99.6 5.3E-15 1.8E-19 128.1 11.9 85 681-769 11-95 (103)
210 2cqg_A TDP-43, TAR DNA-binding 99.6 5.9E-15 2E-19 127.8 12.2 82 10-98 13-95 (103)
211 2dh8_A DAZ-associated protein 99.6 1.4E-15 4.8E-20 132.3 8.3 86 681-769 12-97 (105)
212 1u6f_A Tcubp1, RNA-binding pro 99.6 7E-15 2.4E-19 135.1 13.3 82 9-95 39-121 (139)
213 1wel_A RNA-binding protein 12; 99.6 7.3E-16 2.5E-20 138.4 6.4 92 681-775 21-112 (124)
214 2rs2_A Musashi-1, RNA-binding 99.6 3E-15 1E-19 130.8 9.8 81 9-95 22-103 (109)
215 2kt5_A RNA and export factor-b 99.6 5.2E-15 1.8E-19 132.9 11.7 85 681-768 31-115 (124)
216 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.6E-20 124.8 6.5 74 14-93 2-76 (77)
217 1nu4_A U1A RNA binding domain; 99.6 2.2E-15 7.6E-20 129.0 8.8 84 682-770 5-92 (97)
218 2dis_A Unnamed protein product 99.6 4.1E-15 1.4E-19 130.3 10.6 84 8-96 4-92 (109)
219 2cpi_A CCR4-NOT transcription 99.6 2.7E-15 9.2E-20 131.7 9.3 85 682-768 12-102 (111)
220 2hvz_A Splicing factor, argini 99.6 1.8E-15 6E-20 130.6 8.0 100 581-694 1-100 (101)
221 2fc9_A NCL protein; structure 99.6 5E-15 1.7E-19 127.7 10.9 81 8-96 11-91 (101)
222 2cq4_A RNA binding motif prote 99.6 2.1E-15 7.1E-20 133.4 8.6 82 684-768 24-105 (114)
223 1x4a_A Splicing factor, argini 99.6 5.1E-15 1.8E-19 129.6 10.9 80 9-95 19-98 (109)
224 3lqv_A PRE-mRNA branch site pr 99.6 3.7E-15 1.3E-19 132.0 9.9 82 7-95 3-84 (115)
225 2jvr_A Nucleolar protein 3; RN 99.6 4.2E-15 1.4E-19 129.2 10.0 79 683-767 26-105 (111)
226 2dnq_A RNA-binding protein 4B; 99.6 7.8E-15 2.7E-19 123.5 11.4 78 6-95 2-79 (90)
227 1wg5_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 129.0 9.7 83 682-768 12-95 (104)
228 2a3j_A U1 small nuclear ribonu 99.6 3.5E-15 1.2E-19 133.2 9.6 81 8-95 25-109 (127)
229 2ytc_A PRE-mRNA-splicing facto 99.6 4.9E-15 1.7E-19 123.3 9.9 77 682-765 9-85 (85)
230 2ki2_A SS-DNA binding protein 99.6 7.3E-16 2.5E-20 129.9 4.9 81 686-769 2-82 (90)
231 2ki2_A SS-DNA binding protein 99.6 7.2E-16 2.5E-20 130.0 4.8 76 14-95 3-79 (90)
232 2cq4_A RNA binding motif prote 99.6 2E-15 7E-20 133.4 8.0 78 12-95 25-103 (114)
233 2db1_A Heterogeneous nuclear r 99.6 2.8E-15 9.6E-20 133.0 8.8 83 682-768 14-99 (118)
234 1why_A Hypothetical protein ri 99.6 6.6E-15 2.3E-19 125.9 10.8 80 681-768 13-94 (97)
235 2hgl_A HNRPF protein, heteroge 99.6 1.8E-15 6.3E-20 136.7 7.6 83 682-768 41-126 (136)
236 1x5o_A RNA binding motif, sing 99.6 6.1E-15 2.1E-19 130.3 10.8 84 682-768 22-113 (114)
237 2ad9_A Polypyrimidine tract-bi 99.6 6.3E-15 2.1E-19 129.0 10.7 77 9-95 28-106 (119)
238 2lea_A Serine/arginine-rich sp 99.6 2.1E-15 7.2E-20 137.2 8.0 84 7-95 42-126 (135)
239 2fc9_A NCL protein; structure 99.6 6E-15 2.1E-19 127.2 10.5 82 681-768 11-92 (101)
240 1x4e_A RNA binding motif, sing 99.6 1.2E-15 4.2E-20 127.0 5.8 81 334-414 3-83 (85)
241 2krb_A Eukaryotic translation 99.6 1.8E-15 6.3E-20 124.6 6.8 74 685-762 1-81 (81)
242 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.4E-15 1.5E-19 136.7 10.0 82 7-93 58-140 (140)
243 1x5o_A RNA binding motif, sing 99.6 8.4E-15 2.9E-19 129.4 11.4 82 9-95 22-111 (114)
244 1x4b_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 131.8 9.3 83 684-769 26-108 (116)
245 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8E-15 2.7E-19 135.0 11.3 82 681-764 59-140 (140)
246 2cq1_A PTB-like protein L; RRM 99.6 8.8E-15 3E-19 125.0 10.6 77 9-95 12-90 (101)
247 1h2v_Z 20 kDa nuclear CAP bind 99.6 9.9E-15 3.4E-19 136.9 12.0 86 682-769 36-121 (156)
248 1x4b_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 131.5 9.2 80 11-96 26-106 (116)
249 2ek1_A RNA-binding protein 12; 99.6 3.1E-15 1.1E-19 127.5 7.5 80 335-414 14-93 (95)
250 2krb_A Eukaryotic translation 99.6 1.9E-15 6.4E-20 124.5 5.9 73 12-90 1-80 (81)
251 2m2b_A RNA-binding protein 10; 99.6 1.4E-15 4.7E-20 138.0 5.5 80 10-95 21-107 (131)
252 2jwn_A Embryonic polyadenylate 99.6 4.9E-15 1.7E-19 133.2 9.0 78 12-95 36-114 (124)
253 2lmi_A GRSF-1, G-rich sequence 99.6 2E-15 6.9E-20 131.5 6.2 83 682-768 8-93 (107)
254 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4.1E-19 136.3 11.9 81 10-95 37-118 (156)
255 2cpj_A Non-POU domain-containi 99.6 7E-15 2.4E-19 126.3 9.3 80 682-769 12-91 (99)
256 2dnq_A RNA-binding protein 4B; 99.6 1.2E-14 4.1E-19 122.4 10.5 78 682-769 5-82 (90)
257 2dnp_A RNA-binding protein 14; 99.6 1.2E-14 4.2E-19 122.3 10.5 78 6-95 3-80 (90)
258 2dgu_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 128.2 8.3 79 682-770 8-86 (103)
259 2jwn_A Embryonic polyadenylate 99.6 7.4E-15 2.5E-19 132.0 9.8 81 684-767 35-115 (124)
260 1x4c_A Splicing factor, argini 99.6 1.6E-14 5.6E-19 126.0 11.7 79 682-769 12-95 (108)
261 1why_A Hypothetical protein ri 99.6 1.2E-14 4E-19 124.3 10.5 80 6-95 11-92 (97)
262 2hvz_A Splicing factor, argini 99.6 6.2E-15 2.1E-19 127.2 8.8 76 337-417 1-76 (101)
263 2hgn_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 138.8 4.1 126 627-770 1-126 (139)
264 2dnn_A RNA-binding protein 12; 99.6 6.4E-15 2.2E-19 127.8 8.9 79 684-767 15-93 (109)
265 2cq2_A Hypothetical protein LO 99.6 6.2E-15 2.1E-19 127.5 8.7 78 8-95 21-105 (114)
266 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.1E-15 1E-19 122.0 6.4 76 337-413 1-76 (77)
267 1wex_A Hypothetical protein (r 99.6 9.4E-15 3.2E-19 125.7 9.7 77 9-95 12-90 (104)
268 1x4g_A Nucleolysin TIAR; struc 99.6 1.3E-14 4.5E-19 127.0 10.8 80 682-769 22-101 (109)
269 1whx_A Hypothetical protein ri 99.6 7.3E-15 2.5E-19 128.7 9.2 75 684-766 9-83 (111)
270 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-14 3.7E-19 124.6 9.5 81 681-768 15-95 (97)
271 1x4c_A Splicing factor, argini 99.6 1.5E-14 5.1E-19 126.3 10.6 76 9-95 12-92 (108)
272 2fc8_A NCL protein; structure 99.6 2.1E-14 7E-19 124.1 11.4 83 6-96 9-92 (102)
273 2xnq_A Nuclear polyadenylated 99.6 2.2E-14 7.5E-19 122.4 11.4 78 681-768 18-96 (97)
274 1iqt_A AUF1, heterogeneous nuc 99.6 2.1E-15 7.1E-20 122.3 4.7 74 14-93 1-75 (75)
275 2cpx_A Hypothetical protein FL 99.6 3E-15 1E-19 132.6 6.1 87 681-769 21-107 (115)
276 2dgt_A RNA-binding protein 30; 99.6 2.2E-14 7.6E-19 121.3 11.2 78 6-95 4-81 (92)
277 2dha_A FLJ20171 protein; RRM d 99.5 4.4E-15 1.5E-19 131.7 6.9 83 683-769 21-107 (123)
278 2la4_A Nuclear and cytoplasmic 99.5 8.7E-15 3E-19 126.2 8.6 77 683-767 25-101 (101)
279 1wez_A HnRNP H', FTP-3, hetero 99.5 7.7E-15 2.6E-19 126.3 8.3 81 333-416 12-92 (102)
280 2dgt_A RNA-binding protein 30; 99.5 2.8E-14 9.7E-19 120.6 11.6 79 681-769 6-84 (92)
281 2pe8_A Splicing factor 45; RRM 99.5 2.1E-14 7.1E-19 123.8 10.8 83 683-766 6-93 (105)
282 2xs2_A Deleted in azoospermia- 99.5 6.2E-15 2.1E-19 127.4 7.6 82 7-95 4-85 (102)
283 3zzy_A Polypyrimidine tract-bi 99.5 1.9E-14 6.5E-19 127.4 10.8 78 684-768 27-107 (130)
284 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.8E-19 136.5 11.2 81 10-95 70-151 (165)
285 2ytc_A PRE-mRNA-splicing facto 99.5 1.6E-14 5.6E-19 120.2 9.7 76 9-94 9-85 (85)
286 1fj7_A Nucleolin RBD1, protein 99.5 2.2E-15 7.6E-20 130.0 4.5 83 683-769 15-97 (101)
287 1nu4_A U1A RNA binding domain; 99.5 5.5E-15 1.9E-19 126.5 6.9 79 10-95 6-88 (97)
288 2fc8_A NCL protein; structure 99.5 1.6E-14 5.3E-19 124.9 9.7 85 680-769 10-94 (102)
289 2cq2_A Hypothetical protein LO 99.5 1.8E-14 6.2E-19 124.5 9.9 80 680-767 20-106 (114)
290 2cpx_A Hypothetical protein FL 99.5 6.1E-15 2.1E-19 130.6 7.1 85 6-95 19-104 (115)
291 2dnp_A RNA-binding protein 14; 99.5 2.8E-14 9.7E-19 120.0 10.8 78 681-768 5-82 (90)
292 1x4f_A Matrin 3; structural ge 99.5 7.1E-15 2.4E-19 127.1 7.2 77 9-95 22-101 (112)
293 2dgu_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 122.3 12.1 76 9-96 8-83 (103)
294 2j8a_A Histone-lysine N-methyl 99.5 1.2E-14 4E-19 125.5 8.2 78 13-95 3-95 (136)
295 2diu_A KIAA0430 protein; struc 99.5 2E-14 6.8E-19 117.2 9.1 74 684-769 7-86 (96)
296 2f3j_A RNA and export factor b 99.5 1.2E-14 4.2E-19 138.5 9.2 83 8-95 84-166 (177)
297 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-14 8.3E-19 125.3 10.5 77 10-96 23-99 (109)
298 1fjc_A Nucleolin RBD2, protein 99.5 1.6E-14 5.3E-19 123.4 8.9 79 8-95 12-90 (96)
299 2jvo_A Nucleolar protein 3; nu 99.5 1.5E-14 5.1E-19 126.0 8.8 78 6-95 25-102 (108)
300 3egn_A RNA-binding protein 40; 99.5 1.8E-14 6.2E-19 132.9 9.8 89 680-769 40-132 (143)
301 2xnq_A Nuclear polyadenylated 99.5 2.7E-14 9.2E-19 121.8 10.1 77 7-95 17-94 (97)
302 2e44_A Insulin-like growth fac 99.5 2.6E-14 8.8E-19 122.0 10.0 82 682-769 12-94 (96)
303 2e5j_A Methenyltetrahydrofolat 99.5 2E-14 6.8E-19 122.9 9.3 76 11-95 18-93 (97)
304 2cpd_A Apobec-1 stimulating pr 99.5 5.5E-14 1.9E-18 120.6 12.1 78 682-769 12-91 (99)
305 3q2s_C Cleavage and polyadenyl 99.5 1.2E-14 4E-19 144.8 8.9 80 11-95 67-149 (229)
306 1fj7_A Nucleolin RBD1, protein 99.5 3.6E-15 1.2E-19 128.7 4.5 78 11-95 16-94 (101)
307 2jvo_A Nucleolar protein 3; nu 99.5 2.2E-14 7.6E-19 124.9 9.5 79 681-769 27-105 (108)
308 1fjc_A Nucleolin RBD2, protein 99.5 1.5E-14 5E-19 123.6 8.0 80 682-768 13-92 (96)
309 1iqt_A AUF1, heterogeneous nuc 99.5 7.5E-15 2.6E-19 119.0 5.8 75 338-413 1-75 (75)
310 2cpj_A Non-POU domain-containi 99.5 3.2E-14 1.1E-18 122.1 10.1 76 10-95 13-88 (99)
311 3d2w_A TAR DNA-binding protein 99.5 3.6E-14 1.2E-18 118.8 10.0 79 681-769 7-86 (89)
312 2kvi_A Nuclear polyadenylated 99.5 2.2E-14 7.4E-19 122.3 8.8 76 8-95 6-82 (96)
313 3q2s_C Cleavage and polyadenyl 99.5 1E-14 3.5E-19 145.3 7.7 83 684-768 67-151 (229)
314 2kvi_A Nuclear polyadenylated 99.5 1.9E-14 6.4E-19 122.7 8.2 78 682-769 7-85 (96)
315 1sjr_A Polypyrimidine tract-bi 99.5 3.3E-14 1.1E-18 130.8 10.3 79 684-768 45-125 (164)
316 2la4_A Nuclear and cytoplasmic 99.5 1.7E-14 5.8E-19 124.4 7.8 76 10-95 25-100 (101)
317 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 8E-19 121.4 8.4 79 6-95 2-82 (93)
318 2pe8_A Splicing factor 45; RRM 99.5 5.3E-14 1.8E-18 121.2 10.4 81 10-95 6-93 (105)
319 1jmt_A Splicing factor U2AF 35 99.5 8.8E-15 3E-19 126.0 5.5 70 24-93 22-103 (104)
320 2lcw_A RNA-binding protein FUS 99.3 1.3E-15 4.3E-20 135.2 0.0 85 683-769 5-97 (116)
321 1wf1_A RNA-binding protein RAL 99.5 2.9E-14 9.8E-19 125.0 8.6 77 682-768 24-101 (110)
322 2xs2_A Deleted in azoospermia- 99.5 8.8E-15 3E-19 126.5 5.2 84 683-771 7-90 (102)
323 2hgm_A HNRPF protein, heteroge 99.5 1.7E-14 5.7E-19 128.1 6.8 82 682-768 39-122 (126)
324 2e44_A Insulin-like growth fac 99.5 6E-14 2E-18 119.7 10.0 84 4-95 7-91 (96)
325 1whx_A Hypothetical protein ri 99.5 4.3E-14 1.5E-18 123.8 9.3 83 444-526 7-89 (111)
326 3egn_A RNA-binding protein 40; 99.5 2.4E-14 8.1E-19 132.1 8.0 85 6-95 39-129 (143)
327 1wf1_A RNA-binding protein RAL 99.5 6.3E-14 2.2E-18 122.8 10.2 77 7-95 22-99 (110)
328 2cpd_A Apobec-1 stimulating pr 99.5 1.4E-13 4.6E-18 118.2 12.0 77 8-96 11-89 (99)
329 2f3j_A RNA and export factor b 99.5 6E-14 2.1E-18 133.7 10.4 85 682-769 85-169 (177)
330 1x5p_A Negative elongation fac 99.5 1.4E-13 4.9E-18 117.5 11.3 78 682-769 12-89 (97)
331 2lcw_A RNA-binding protein FUS 99.2 2.3E-15 7.8E-20 133.5 0.0 81 10-95 5-94 (116)
332 2cqh_A IGF-II mRNA-binding pro 99.5 4.9E-14 1.7E-18 119.4 8.3 79 682-769 5-85 (93)
333 2e5i_A Heterogeneous nuclear r 99.5 9E-14 3.1E-18 122.7 10.2 74 687-768 27-103 (124)
334 1wg1_A KIAA1579 protein, homol 99.5 6.2E-14 2.1E-18 117.3 8.6 76 684-768 4-79 (88)
335 1wg1_A KIAA1579 protein, homol 99.5 5.9E-14 2E-18 117.5 8.0 74 11-95 4-77 (88)
336 2j8a_A Histone-lysine N-methyl 99.5 7.8E-14 2.7E-18 120.4 8.8 79 337-415 3-95 (136)
337 2e5g_A U6 snRNA-specific termi 99.5 1.7E-13 5.7E-18 116.3 9.9 77 8-95 4-81 (94)
338 2e5i_A Heterogeneous nuclear r 99.5 2.9E-13 1E-17 119.5 11.7 80 6-95 17-101 (124)
339 1x5p_A Negative elongation fac 99.5 2.7E-13 9.3E-18 115.7 11.1 76 8-95 11-86 (97)
340 3d2w_A TAR DNA-binding protein 99.5 1.1E-13 3.9E-18 115.7 8.5 77 6-95 5-83 (89)
341 2bz2_A Negative elongation fac 99.5 1.2E-13 4.2E-18 122.7 9.2 83 682-774 36-118 (121)
342 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-13 6E-18 126.0 10.4 73 15-95 49-123 (164)
343 3zzy_A Polypyrimidine tract-bi 99.5 2.4E-13 8.1E-18 120.4 10.5 73 14-95 30-105 (130)
344 2diu_A KIAA0430 protein; struc 99.5 2E-13 6.9E-18 111.3 9.1 76 6-95 2-83 (96)
345 2hzc_A Splicing factor U2AF 65 99.4 1.6E-13 5.3E-18 114.7 8.2 75 7-92 1-86 (87)
346 3v4m_A Splicing factor U2AF 65 99.4 2.8E-13 9.6E-18 116.7 9.8 84 683-767 3-97 (105)
347 3beg_B Splicing factor, argini 99.4 1.3E-13 4.3E-18 121.7 7.8 74 11-95 15-93 (115)
348 2voo_A Lupus LA protein; RNA-b 99.4 4.8E-13 1.7E-17 129.4 12.5 123 636-767 63-187 (193)
349 2e5g_A U6 snRNA-specific termi 99.4 4.4E-13 1.5E-17 113.7 10.8 77 334-416 6-82 (94)
350 2dnl_A Cytoplasmic polyadenyla 99.4 1.8E-13 6.1E-18 120.6 8.1 80 8-95 4-87 (114)
351 3v4m_A Splicing factor U2AF 65 99.4 2.2E-13 7.4E-18 117.4 8.1 81 10-95 3-96 (105)
352 1wf0_A TDP-43, TAR DNA-binding 99.4 1.5E-13 5.1E-18 115.0 6.3 78 683-769 3-80 (88)
353 3beg_B Splicing factor, argini 99.4 3.4E-13 1.2E-17 118.9 8.2 76 683-767 14-94 (115)
354 3ue2_A Poly(U)-binding-splicin 99.4 4.7E-13 1.6E-17 117.5 8.9 82 684-766 19-108 (118)
355 2voo_A Lupus LA protein; RNA-b 99.4 4.5E-13 1.5E-17 129.7 9.6 78 12-95 109-186 (193)
356 3pgw_S U1-70K; protein-RNA com 99.4 5.5E-13 1.9E-17 145.6 11.5 81 10-95 100-181 (437)
357 2hzc_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 111.4 8.7 72 683-763 4-86 (87)
358 2dnl_A Cytoplasmic polyadenyla 99.4 5.3E-13 1.8E-17 117.6 9.0 77 334-413 6-85 (114)
359 2bz2_A Negative elongation fac 99.4 9.6E-13 3.3E-17 116.8 9.3 76 8-95 35-110 (121)
360 3u1l_A PRE-mRNA-splicing facto 99.4 8.8E-13 3E-17 130.0 10.0 80 682-769 131-231 (240)
361 3ue2_A Poly(U)-binding-splicin 99.4 1.1E-12 3.9E-17 115.0 8.8 80 11-95 19-108 (118)
362 1wf0_A TDP-43, TAR DNA-binding 99.4 4.9E-13 1.7E-17 111.9 6.1 75 10-95 3-77 (88)
363 2dit_A HIV TAT specific factor 99.4 2.3E-12 8E-17 113.0 10.6 83 681-769 11-104 (112)
364 1jmt_A Splicing factor U2AF 35 99.4 6.2E-13 2.1E-17 114.4 6.2 72 690-764 20-103 (104)
365 2dit_A HIV TAT specific factor 99.3 3.6E-12 1.2E-16 111.8 10.7 79 9-95 12-101 (112)
366 3s6e_A RNA-binding protein 39; 99.3 1.8E-12 6.1E-17 112.9 6.6 87 6-95 1-92 (114)
367 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4E-16 105.0 11.0 78 12-95 10-89 (100)
368 3u1l_A PRE-mRNA-splicing facto 99.3 5.2E-12 1.8E-16 124.5 8.9 76 11-96 133-229 (240)
369 3s6e_A RNA-binding protein 39; 99.2 2.1E-11 7.2E-16 106.1 9.4 79 683-767 5-93 (114)
370 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.6E-11 1.2E-15 101.9 10.2 65 695-768 27-91 (100)
371 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4.2E-15 121.2 10.4 77 681-765 14-97 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 4.5E-10 1.5E-14 97.5 10.0 90 681-777 14-106 (121)
373 3tht_A Alkylated DNA repair pr 99.1 2E-10 6.9E-15 119.6 8.5 81 6-94 12-97 (345)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 8.9E-10 3E-14 89.0 8.7 75 682-767 4-86 (91)
375 1owx_A Lupus LA protein, SS-B, 98.9 3.8E-09 1.3E-13 91.6 9.6 83 2-94 8-94 (121)
376 3dxb_A Thioredoxin N-terminall 98.8 8.5E-09 2.9E-13 102.4 10.1 90 6-95 118-212 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 1.1E-08 3.6E-13 82.8 8.0 72 11-95 6-85 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.7 2.8E-08 9.5E-13 80.6 6.9 75 681-766 11-94 (95)
379 3dxb_A Thioredoxin N-terminall 98.7 3.9E-08 1.3E-12 97.6 9.6 70 697-767 141-213 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 9E-08 3.1E-12 77.7 7.0 71 10-93 13-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.3 3E-06 1E-10 69.9 8.8 73 446-518 20-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.3 1E-05 3.5E-10 66.8 11.3 86 683-782 19-109 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 3.3E-05 1.1E-09 63.5 9.2 70 222-292 6-81 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.7 0.00027 9.2E-09 58.1 10.3 88 335-460 7-99 (104)
385 1wey_A Calcipressin 1; structu 97.4 0.00032 1.1E-08 58.0 7.1 76 685-768 5-85 (104)
386 1wey_A Calcipressin 1; structu 97.3 0.00076 2.6E-08 55.7 7.6 73 447-519 5-82 (104)
387 1uw4_A UPF3X; nonsense mediate 97.2 0.0011 3.8E-08 54.0 8.2 67 13-84 2-71 (91)
388 1wwh_A Nucleoporin 35, nucleop 97.2 0.0014 4.8E-08 55.8 8.3 77 6-94 18-95 (119)
389 1whv_A Poly(A)-specific ribonu 97.0 0.0019 6.6E-08 52.3 7.4 54 222-276 14-67 (100)
390 1uw4_A UPF3X; nonsense mediate 96.8 0.0046 1.6E-07 50.3 8.3 68 337-404 2-71 (91)
391 1whv_A Poly(A)-specific ribonu 96.6 0.0066 2.3E-07 49.2 7.7 62 6-79 9-70 (100)
392 3ctr_A Poly(A)-specific ribonu 96.6 0.0016 5.4E-08 53.0 3.9 52 224-276 6-57 (101)
393 1wwh_A Nucleoporin 35, nucleop 96.4 0.0083 2.8E-07 51.1 7.6 72 445-518 22-94 (119)
394 3p3d_A Nucleoporin 53; structu 96.4 0.0022 7.4E-08 55.4 3.6 77 12-95 7-98 (132)
395 3ctr_A Poly(A)-specific ribonu 96.1 0.01 3.4E-07 48.3 5.8 58 10-79 3-60 (101)
396 2l08_A Regulator of nonsense t 95.9 0.0064 2.2E-07 49.7 3.9 69 11-84 8-79 (97)
397 3p3d_A Nucleoporin 53; structu 95.8 0.013 4.3E-07 50.6 5.5 92 684-779 6-110 (132)
398 2l08_A Regulator of nonsense t 95.3 0.041 1.4E-06 44.9 6.8 73 447-519 9-94 (97)
399 3pq1_A Poly(A) RNA polymerase; 92.9 0.054 1.8E-06 58.3 3.6 57 444-501 50-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 92.1 0.082 2.8E-06 56.9 3.6 57 684-747 52-108 (464)
401 3d45_A Poly(A)-specific ribonu 81.4 2.6 8.8E-05 46.3 7.5 52 224-276 440-491 (507)
402 3d45_A Poly(A)-specific ribonu 81.1 3 0.0001 45.7 7.9 61 7-79 434-494 (507)
403 4eyt_A Telomerase associated p 60.8 34 0.0012 26.7 7.2 55 222-276 10-64 (129)
404 4e8u_A Putative uncharacterize 59.5 15 0.00052 33.3 5.8 61 15-82 15-86 (172)
405 2g0c_A ATP-dependent RNA helic 45.2 24 0.00083 27.0 4.3 59 28-94 12-75 (76)
406 4eyt_A Telomerase associated p 44.7 1.1E+02 0.0037 23.8 8.8 57 578-647 10-66 (129)
407 4e8u_A Putative uncharacterize 35.3 46 0.0016 30.1 5.0 52 225-276 13-81 (172)
408 2cu1_A Mitogen-activated prote 28.8 1.1E+02 0.0039 24.6 5.6 63 25-95 24-87 (103)
409 1wvf_A 4-cresol dehydrogenase 25.7 50 0.0017 36.2 4.4 45 33-77 217-263 (520)
410 2g0c_A ATP-dependent RNA helic 21.9 76 0.0026 24.0 3.6 60 695-765 11-75 (76)
411 3j21_T 50S ribosomal protein L 21.6 1.7E+02 0.0058 23.0 5.4 51 25-77 30-82 (86)
412 1igq_A Transcriptional repress 20.7 61 0.0021 23.6 2.4 22 46-67 21-42 (62)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.9e-41 Score=351.14 Aligned_cols=257 Identities=20% Similarity=0.286 Sum_probs=231.8
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCcc
Q psy3345 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 522 (787)
Q Consensus 443 ~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 522 (787)
...+.++|+|+|||.++++++|+++|+.|| |..+.+..++++|||+|.+.++|.+|+..|+|..+.|++|.|.|.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~-- 94 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT-- 94 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC--
Confidence 345679999999999999999999999999 99999998999999999999999999999999999999999998643
Q ss_pred ccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHh
Q psy3345 523 FAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFK 602 (787)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~ 602 (787)
.++|||+|||+++++++|+++|+
T Consensus 95 ---------------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 95 ---------------------------------------------------------DALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp ---------------------------------------------------------SCEEEEESCCTTCCHHHHHHHHG
T ss_pred ---------------------------------------------------------CCEEEEcCCCCcCCHHHHHHHHH
Confidence 36899999999999999999999
Q ss_pred hcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhccccccC
Q psy3345 603 KCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAK 682 (787)
Q Consensus 603 ~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 682 (787)
.||.|.++.++.+.. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.+... ....
T Consensus 118 ~~G~i~~~~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~-----------~~~~ 181 (284)
T 3smz_A 118 PFGSLERCFLVYSER-----TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL-----------TPAL 181 (284)
T ss_dssp GGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC-----------CTTT
T ss_pred hcCCeeEEEEEeeCC-----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC-----------Cccc
Confidence 999999999998765 578999999999999999999999999999999999999876543 1223
Q ss_pred CCCCEEEEecCCccC-cHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 683 QTGSKILVRNIPFQA-KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~-t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
.+.++|||+|||..+ |+++|+++|+.||.|.+++|+++ .+|.++|+|||+|.+.++|.+|+..|| |..+.|++|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 258 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG--QDGQLKGFAVLEYETAEMAEEAQQQAD-GLSLGGSHLRV 258 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC--SSCCEEEEEEEECSSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC--CCCCcccEEEEEeCCHHHHHHHHHHhC-CCccCCeEEEE
Confidence 567899999999995 99999999999999999999998 489999999999999999999999997 79999999999
Q ss_pred EEccccccH-HHHHHHHh
Q psy3345 762 EWAEEADNV-EDIRKRTN 778 (787)
Q Consensus 762 ~~A~~~~~~-~~~~~~~~ 778 (787)
+||.+++.. ..+.+..+
T Consensus 259 ~~a~~~~~~~~~~~~~~a 276 (284)
T 3smz_A 259 SFCAPGPPGRSMLAALIA 276 (284)
T ss_dssp EECCSSSCHHHHHHHHHH
T ss_pred EEecCCCcccchhhhhhH
Confidence 999988763 33444433
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=5.9e-40 Score=345.01 Aligned_cols=249 Identities=20% Similarity=0.281 Sum_probs=212.2
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC----CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEe
Q psy3345 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518 (787)
Q Consensus 443 ~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~----~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 518 (787)
.....++|+|+|||+++++++|+++|+.||.|..|.+.+ ++++|||+|.+.++|.+|+. ++|..+.|++|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 456789999999999999999999999999999999876 46899999999999999995 9999999999999976
Q ss_pred cCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHH
Q psy3345 519 PEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIR 598 (787)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~ 598 (787)
. .++|||+|||+.+++++|+
T Consensus 116 ~------------------------------------------------------------~~~l~v~nlp~~~t~~~l~ 135 (292)
T 2ghp_A 116 T------------------------------------------------------------ECTLWMTNFPPSYTQRNIR 135 (292)
T ss_dssp C------------------------------------------------------------SCEEEEECCCTTCCHHHHH
T ss_pred C------------------------------------------------------------CCEEEEECCCCCCCHHHHH
Confidence 2 3689999999999999999
Q ss_pred HHHhhcC-CeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhcc
Q psy3345 599 RHFKKCG-PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS 677 (787)
Q Consensus 599 ~~F~~~G-~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~ 677 (787)
++|+.|| .|.++.++.+.. +.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.+.......
T Consensus 136 ~~f~~~G~~i~~v~i~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------ 203 (292)
T 2ghp_A 136 DLLQDINVVALSIRLPSLRF------NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------ 203 (292)
T ss_dssp HHHHHTTCCCCEEECC-------------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------
T ss_pred HHHHHhCCCeEEEEEEeCCC------CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc------
Confidence 9999999 999999988764 568999999999999999999999999999999999998765441111
Q ss_pred ccccCCCCCEEEEecCCcc-CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC
Q psy3345 678 SNVAKQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756 (787)
Q Consensus 678 ~~~~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G 756 (787)
.....+.++|||+|||.. +|+++|+++|+.||.|.+|+|+++...+|.++|||||+|.+.++|.+|+ .|| +..+.|
T Consensus 204 -~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-g~~~~g 280 (292)
T 2ghp_A 204 -DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-RSLLGN 280 (292)
T ss_dssp ----CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-TEEETT
T ss_pred -cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc-CCEECC
Confidence 123456799999999999 9999999999999999999999985224999999999999999999999 997 799999
Q ss_pred ceEEEEEcccc
Q psy3345 757 RRLVLEWAEEA 767 (787)
Q Consensus 757 r~l~v~~A~~~ 767 (787)
++|.|.||.++
T Consensus 281 ~~i~V~~a~~k 291 (292)
T 2ghp_A 281 REISVSLADKK 291 (292)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEecCC
Confidence 99999999976
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.2e-37 Score=325.96 Aligned_cols=241 Identities=22% Similarity=0.299 Sum_probs=216.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
..+.++|||+|||+++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34678999999999999999999999999 999887 45778999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEE
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITG 486 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a 486 (787)
+.. .++|+|+|||+.+++++|+++|+.||.|..+.+..+ +++|
T Consensus 92 ~~~-------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~a 140 (284)
T 3smz_A 92 QPT-------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYG 140 (284)
T ss_dssp CCC-------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEE
T ss_pred cCC-------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEE
Confidence 542 478999999999999999999999999998887542 3589
Q ss_pred EEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccc
Q psy3345 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVE 566 (787)
Q Consensus 487 ~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (787)
||+|.+.++|.+|+..|+|..+.|++|.|.|+.....
T Consensus 141 fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~------------------------------------------- 177 (284)
T 3smz_A 141 FAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL------------------------------------------- 177 (284)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC-------------------------------------------
T ss_pred EEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC-------------------------------------------
Confidence 9999999999999999999999999999999854410
Q ss_pred cccccccccCCCCCCeEEecCCCCCC-CHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy3345 567 ENVEEDEEREPEPDTTLYIKNLNFNS-TEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALK 645 (787)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~V~NLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~ 645 (787)
.....+.++|||+|||+++ ++++|+++|+.||.|.++.++.+.. +.++|||||+|.+.++|.+|+.
T Consensus 178 -------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~------g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 178 -------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD------GQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp -------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS------CCEEEEEEEECSSHHHHHHHHH
T ss_pred -------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC------CCcccEEEEEeCCHHHHHHHHH
Confidence 0122456899999999995 9999999999999999999998764 7899999999999999999999
Q ss_pred HhCCCccCCeEEEEEecCcccc
Q psy3345 646 VLQNSSLDEHQIELKRSNRNLE 667 (787)
Q Consensus 646 ~lng~~l~g~~l~v~~~~~~~~ 667 (787)
.|||..++|+.|.|.++.+...
T Consensus 245 ~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 245 QADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHTTCEETTEECEEEECCSSSC
T ss_pred HhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999987655
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.3e-38 Score=329.04 Aligned_cols=248 Identities=16% Similarity=0.224 Sum_probs=213.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEe
Q psy3345 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI 411 (787)
Q Consensus 332 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 411 (787)
...+.++|||+|||+++|+++|+++|+.||+|.+|.++.+..+ ++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456789999999999999999999999999999999987643 57999999999999999995 99999999999998
Q ss_pred eCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCC-CeeEEEecC-----CCcE
Q psy3345 412 PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP-----YGIT 485 (787)
Q Consensus 412 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~-----~~~~ 485 (787)
++. .++|+|+|||..+++++|+++|+.|| .|..|.+.. ..++
T Consensus 114 ~~~--------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~ 161 (292)
T 2ghp_A 114 HLT--------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRF 161 (292)
T ss_dssp ECC--------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCE
T ss_pred ECC--------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceE
Confidence 754 57899999999999999999999999 999999875 4579
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCCCccc
Q psy3345 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEV 565 (787)
Q Consensus 486 a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (787)
|||+|.+.++|.+|+..|+|..+.|++|.|.|+.+..-....
T Consensus 162 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------------------------- 203 (292)
T 2ghp_A 162 AYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-------------------------------------- 203 (292)
T ss_dssp EEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--------------------------------------------
T ss_pred EEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--------------------------------------
Confidence 999999999999999999999999999999998544100000
Q ss_pred ccccccccccCCCCCCeEEecCCCCC-CCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHH
Q psy3345 566 EENVEEDEEREPEPDTTLYIKNLNFN-STEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644 (787)
Q Consensus 566 ~~~~~~~~~~~~~~~~~l~V~NLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~ 644 (787)
.....+.++|||+|||+. +++++|+++|++||.|.+++++.+.. .++.++|||||+|.+.++|.+|+
T Consensus 204 --------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~----~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 204 --------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK----EHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp -----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------CCCEEEEEEESSHHHHHHHG
T ss_pred --------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC----cCCCCceEEEEEeCCHHHHHHHH
Confidence 012345789999999999 99999999999999999999987542 24789999999999999999999
Q ss_pred HHhCCCccCCeEEEEEecCcc
Q psy3345 645 KVLQNSSLDEHQIELKRSNRN 665 (787)
Q Consensus 645 ~~lng~~l~g~~l~v~~~~~~ 665 (787)
.|||..++|+.|.|.++.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999998764
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=7.3e-32 Score=268.68 Aligned_cols=175 Identities=23% Similarity=0.405 Sum_probs=155.5
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++.. ++.++|||||+|.+.++|.+|+..+|+..+.|+.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-----TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC-----CCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 34568999999999999999999999999999999999876 6789999999999999999999999999999999
Q ss_pred EEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEec
Q psy3345 657 IELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736 (787)
Q Consensus 657 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~ 736 (787)
|.+.++....... ....++|||+|||+.+|+++|+++|+.||.|.+|+|+++ .+.++|||||+|.
T Consensus 87 i~~~~~~~~~~~~------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d---~~~~~g~~fV~f~ 151 (213)
T 4f02_A 87 VRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD---ENGSKGYGFVHFE 151 (213)
T ss_dssp CEEEECCCCTHHH------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE---TTEEEEEEEEEES
T ss_pred ccccccccccccc------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc---CCCCceEEEEEeC
Confidence 9999986544311 123568999999999999999999999999999999988 4568999999999
Q ss_pred CHHHHHHHHHHhcCCeeecCceEEEEEccccccHHH
Q psy3345 737 TKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVED 772 (787)
Q Consensus 737 ~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~~~ 772 (787)
+.++|.+|++.|| |..+.|++|.|.||.++.+.+.
T Consensus 152 ~~~~a~~Ai~~ln-g~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 152 TQEAAERAIEKMN-GMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp SHHHHHHHHHHHT-TCEETTEECEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHhC-CCEECCEEEEEEEcCCCcccch
Confidence 9999999999997 7999999999999998765433
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-30 Score=248.00 Aligned_cols=166 Identities=25% Similarity=0.484 Sum_probs=152.6
Q ss_pred CeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Q psy3345 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELK 660 (787)
Q Consensus 581 ~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~ 660 (787)
++|||+|||+++|+++|+++|++||.|.++.++.++. +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN------NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC------CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEE
Confidence 5899999999999999999999999999999998764 5689999999999999999999999999999999999
Q ss_pred ecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHH
Q psy3345 661 RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740 (787)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~ 740 (787)
++..... ....+.++|+|+|||..+|+++|+++|++||.|.+++++.+. .+|.++|||||+|.+.++
T Consensus 75 ~~~~~~~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 75 WAFQSQQ------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-QTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp ECCCCCC------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT-TTCCEEEEEEEEESCHHH
T ss_pred EcCCCCC------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC-CCCCcceEEEEEeCCHHH
Confidence 9865443 234567899999999999999999999999999999999885 689999999999999999
Q ss_pred HHHHHHHhcCCeeecCceEEEEEccc
Q psy3345 741 AKRAMKALCQSTHLYGRRLVLEWAEE 766 (787)
Q Consensus 741 A~~Al~~l~~~~~~~Gr~l~v~~A~~ 766 (787)
|.+|+..|| +..+.|++|.|+||++
T Consensus 142 A~~A~~~l~-g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 142 AQNAMDSMQ-GQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHT-TCEETTEECEEEESCC
T ss_pred HHHHHHHhC-CCccCCcEEEEEecCC
Confidence 999999997 7999999999999974
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=7.5e-30 Score=244.59 Aligned_cols=165 Identities=23% Similarity=0.409 Sum_probs=152.5
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~ 658 (787)
+.++|||+|||+++++++|+++|++||.|.++.++.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-----TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 76 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-----TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC-----CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence 468999999999999999999999999999999998765 578999999999999999999999999999999999
Q ss_pred EEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCH
Q psy3345 659 LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738 (787)
Q Consensus 659 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~ 738 (787)
|.++.+... ..+.++|+|+|||..+|+++|+++|++||.|.+++++++. .+|.++|||||+|.+.
T Consensus 77 v~~~~~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 77 VSYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK-LTGRPRGVAFVRYNKR 141 (168)
T ss_dssp EEECCCCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT-TTCCEEEEEEEEESSH
T ss_pred EEecCCCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC-CCCCcceEEEEEECCH
Confidence 999875433 2457899999999999999999999999999999999884 5889999999999999
Q ss_pred HHHHHHHHHhcCCeeecC--ceEEEEEc
Q psy3345 739 NEAKRAMKALCQSTHLYG--RRLVLEWA 764 (787)
Q Consensus 739 ~~A~~Al~~l~~~~~~~G--r~l~v~~A 764 (787)
++|.+|+..|| +..+.| ++|.|+||
T Consensus 142 ~~A~~A~~~l~-g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 142 EEAQEAISALN-NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHT-TCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhc-CCEecCCCeEEEEEeC
Confidence 99999999997 699988 99999997
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.7e-29 Score=241.81 Aligned_cols=164 Identities=27% Similarity=0.453 Sum_probs=150.8
Q ss_pred CCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q psy3345 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIEL 659 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v 659 (787)
.++|||+|||+++++++|+++|+.||.|.++.+..++. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-----TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 58999999999999999999999999999999998764 5789999999999999999999999999999999999
Q ss_pred EecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHH
Q psy3345 660 KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739 (787)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~ 739 (787)
.++.+... ..+.++|+|+|||..+|+++|+++|++||.|.+++++.+. .+|.++|||||+|.+.+
T Consensus 77 ~~~~~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 77 SYARPSSA--------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ-VTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp EECCCCCG--------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHH
T ss_pred EecCCCcc--------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC-CCCCccceEEEEeCCHH
Confidence 99875433 2356789999999999999999999999999999998884 57899999999999999
Q ss_pred HHHHHHHHhcCCeeecCc--eEEEEEc
Q psy3345 740 EAKRAMKALCQSTHLYGR--RLVLEWA 764 (787)
Q Consensus 740 ~A~~Al~~l~~~~~~~Gr--~l~v~~A 764 (787)
+|.+|++.|| |..+.|+ +|.|+||
T Consensus 142 ~A~~A~~~l~-g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 142 EAEEAIKGLN-GQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHT-TCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhc-CCccCCCccceEEEeC
Confidence 9999999997 7999996 4999997
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2.1e-29 Score=248.09 Aligned_cols=179 Identities=26% Similarity=0.456 Sum_probs=150.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
..+.++|||+|||+++|+++|+++|+.||.|.++.++.++. ++.++|||||+|.+.++|.+|+.. ++..+.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-----TKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC-----CCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 44578999999999999999999999999999999999765 578999999999999999999985 899999999
Q ss_pred EEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEec
Q psy3345 657 IELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736 (787)
Q Consensus 657 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~ 736 (787)
|.|.++....... ......+.++|||+|||..+|+++|+++|+.||.|.+++|+.+. .+|.++|||||+|.
T Consensus 84 l~v~~~~~~~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~F~ 154 (196)
T 1l3k_A 84 VEPKRAVSREDSQ--------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTFD 154 (196)
T ss_dssp CEEEECCC-------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT-TTCCEEEEEEEEES
T ss_pred eeeecccCccccc--------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-CCCCccceEEEEEC
Confidence 9999987543311 11223456899999999999999999999999999999999885 58999999999999
Q ss_pred CHHHHHHHHHHhcCCeeecCceEEEEEccccccHHH
Q psy3345 737 TKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVED 772 (787)
Q Consensus 737 ~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~~~ 772 (787)
+.++|.+|+.. + +..+.|+.|.|.||.+++....
T Consensus 155 ~~~~A~~A~~~-~-~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 155 DHDSVDKIVIQ-K-YHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp SHHHHHHHHHC-S-CCEETTEECEEEECC-------
T ss_pred CHHHHHHHHHh-C-CcEECCEEEEEEecCChhHhcc
Confidence 99999999986 4 6999999999999998886533
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.4e-29 Score=250.65 Aligned_cols=179 Identities=21% Similarity=0.398 Sum_probs=154.9
Q ss_pred CCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Q psy3345 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIEL 659 (787)
Q Consensus 580 ~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v 659 (787)
.++|||+|||+++|+++|+++|+.||.|.+++++++.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV-----TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C-----C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 57999999999999999999999999999999998764 5789999999999999999999999999999999999
Q ss_pred EecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHH
Q psy3345 660 KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739 (787)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~ 739 (787)
.++............ ........++|||+|||..+|+++|+++|+.||.|..++|+++. .+|.++|||||+|.+.+
T Consensus 103 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQ---LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP-TTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp ECCSCCGGGHHHHHH---HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT-TTCCEEEEEEEEESSHH
T ss_pred ecCCCccccchhhhh---hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC-CCCCcCceEEEEecCHH
Confidence 988765432211111 11123467899999999999999999999999999999999885 58999999999999999
Q ss_pred HHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 740 EAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 740 ~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
+|.+|+..|| +..+.|+.|.|.||.+..
T Consensus 179 ~A~~A~~~l~-g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 179 SSQDAVSSMN-LFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHT-TCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHHcc-CCEeCCcEEEEEEecCCC
Confidence 9999999997 799999999999998653
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=8.5e-30 Score=243.96 Aligned_cols=166 Identities=27% Similarity=0.450 Sum_probs=149.7
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~ 658 (787)
+.++|||+|||+++|+++|+++|++||.|.++++++++. ++.++|||||+|.+.++|.+|+.. +..++|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA-----TGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT-----TSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC-----CCCccceEEEEEccHHHHHHHHhc--ccccCCeEcc
Confidence 357999999999999999999999999999999998765 678999999999999999999994 6789999999
Q ss_pred EEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCH
Q psy3345 659 LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738 (787)
Q Consensus 659 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~ 738 (787)
+.++..... ..+.++|||+|||..+|+++|+++|++||.|.+++++.+. .+|.++|||||+|.+.
T Consensus 75 v~~~~~~~~--------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 75 PKRAIPRDE--------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK-DTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CEECCCHHH--------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS-SSSTTSEEEEEEESSH
T ss_pred cccccchhh--------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC-CCCccceEEEEEECCH
Confidence 988765432 1235689999999999999999999999999999999885 5799999999999999
Q ss_pred HHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 739 NEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 739 ~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
++|.+|++ ++ +..+.|++|.|.||.|++
T Consensus 140 ~~a~~A~~-~~-~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 140 DAVDRVCQ-NK-FIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHHHH-CS-EECSSSSCEEEEECCCCC
T ss_pred HHHHHHHh-CC-CEEeCCeEEEEeecCCCC
Confidence 99999998 65 799999999999999864
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=7.3e-29 Score=239.41 Aligned_cols=168 Identities=24% Similarity=0.454 Sum_probs=147.2
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---Ce
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLD---EH 655 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~---g~ 655 (787)
+.++|||+|||+++|+++|+++|++||.|.+++++++.. .+.+.++|||||+|.+.++|.+|+..|||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS---QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS---SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 357999999999999999999999999999999999876 222379999999999999999999999998775 67
Q ss_pred EEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEe
Q psy3345 656 QIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735 (787)
Q Consensus 656 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F 735 (787)
.+.+.++..... ...+.++|||+|||..+|+++|+++|++||.|.+++++++ .+|.++|||||+|
T Consensus 79 ~~~~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~--~~g~~~g~afV~f 143 (175)
T 3nmr_A 79 PIQMKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG--PDGLSRGCAFVTF 143 (175)
T ss_dssp CCEEEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC--TTSCEEEEEEEEE
T ss_pred ceEEcccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC--CCCCEEEEEEEEE
Confidence 788877654332 1235678999999999999999999999999999999998 4799999999999
Q ss_pred cCHHHHHHHHHHhcCCeeec---CceEEEEEcc
Q psy3345 736 ITKNEAKRAMKALCQSTHLY---GRRLVLEWAE 765 (787)
Q Consensus 736 ~~~~~A~~Al~~l~~~~~~~---Gr~l~v~~A~ 765 (787)
.+.++|.+|+..|| +..+. |++|.|.||+
T Consensus 144 ~~~~~A~~A~~~l~-g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 144 TTRAMAQTAIKAMH-QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SSHHHHHHHHHHHT-TSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHHhc-CCcccCCCCCCeEEEecC
Confidence 99999999999997 56555 4999999995
No 13
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2.4e-28 Score=243.28 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=149.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
..+.++|||+|||+++|+++|+++|++||+|.+|.|++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecC----CCcEEEE
Q psy3345 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP----YGITGLV 488 (787)
Q Consensus 413 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~----~~~~a~V 488 (787)
+... .........+|+|+|||+.+++++|+++|+.||.|..|.+.. ++++|||
T Consensus 92 ~~~~-----------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV 148 (213)
T 4f02_A 92 SQRD-----------------------PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFV 148 (213)
T ss_dssp CCCC-----------------------THHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEE
T ss_pred cccc-----------------------ccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEE
Confidence 8754 112233467899999999999999999999999999988865 3468999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc
Q psy3345 489 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 489 ~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 521 (787)
+|.+.++|.+|+..|||..+.|++|.|.|+...
T Consensus 149 ~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 149 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999999999999999999999999543
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4.8e-28 Score=238.07 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=143.5
Q ss_pred CCCeEEecCCC-CCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Q psy3345 579 PDTTLYIKNLN-FNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657 (787)
Q Consensus 579 ~~~~l~V~NLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l 657 (787)
+.++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------STTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 56899999999 79999999999999999999999863 36999999999999999999999999999999
Q ss_pred EEEecCccccchhhh-----------------hhhcc------ccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCe--
Q psy3345 658 ELKRSNRNLESEATT-----------------VKRKS------SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGEL-- 712 (787)
Q Consensus 658 ~v~~~~~~~~~~~~~-----------------~~~~~------~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I-- 712 (787)
.|.++......+... ..+.. ......+.++|||+|||+.+|+++|+++|+.||.|
T Consensus 73 ~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~ 152 (205)
T 3tyt_A 73 NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRP 152 (205)
T ss_dssp EEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCC
T ss_pred EEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcce
Confidence 999986432111000 00000 00112467899999999999999999999999999
Q ss_pred eEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc----eEEEEEc
Q psy3345 713 KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR----RLVLEWA 764 (787)
Q Consensus 713 ~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr----~l~v~~A 764 (787)
.+++++.+ .|.++|+|||+|.+.++|.+||..|| +..+.|+ ++.|.||
T Consensus 153 ~~v~~~~~---~~~~~g~gfV~f~~~~~A~~Ai~~ln-g~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 153 TSVKVFSG---KSERSSSGLLEWDSKSDALETLGFLN-HYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SEEEECSC---CSSSSEEEEEECSSHHHHHHHHHHHT-TCEECCSSSSSCEECEEE
T ss_pred EEEEEEcC---CCCCceEEEEEeCCHHHHHHHHHHhC-CCCccCCCCCcceEEEec
Confidence 89999887 36667999999999999999999997 6999986 6888776
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=7.3e-28 Score=231.69 Aligned_cols=159 Identities=23% Similarity=0.498 Sum_probs=143.7
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhc----C-------CeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKC----G-------PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVL 647 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~l 647 (787)
+.++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------~~g~afV~f~~~~~A~~A~-~~ 70 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM-AF 70 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------TTTEEEEEESSHHHHHHHG-GG
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------CCCEEEEEeCCHHHHHHHH-Hh
Confidence 35899999999999999999999999 6 777777653 5799999999999999999 89
Q ss_pred CCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCC
Q psy3345 648 QNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 727 (787)
Q Consensus 648 ng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~ 727 (787)
||..+.|+.|.|.++..... ....++|||+|||..+|+++|+++|++||.|.+++++++. .+|.+
T Consensus 71 ~~~~~~g~~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~ 135 (172)
T 2g4b_A 71 DGIIFQGQSLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS-ATGLS 135 (172)
T ss_dssp TTCEETTEECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TTCSE
T ss_pred CCcEecCceeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC-CCCCc
Confidence 99999999999998754322 2347889999999999999999999999999999999885 58999
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 728 RGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 728 ~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
+|||||+|.+.++|.+|+..|| +..+.|++|.|+||.
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 136 KGYAFCEYVDINVTDQAIAGLN-GMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEEESSTTHHHHHHHHHT-TCEETTEECEEEECC
T ss_pred ceEEEEEeCCHHHHHHHHHHcC-CCEECCeEEEEEeCC
Confidence 9999999999999999999997 799999999999984
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.9e-28 Score=236.52 Aligned_cols=166 Identities=21% Similarity=0.377 Sum_probs=143.7
Q ss_pred CCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q psy3345 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEH 655 (787)
Q Consensus 576 ~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~ 655 (787)
...+.++|||+|||+++++++|+++|+.||.+..+.+ .+.. ++.++|||||+|.+.++|.+|+. |||..+.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~~~-----~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 81 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDVR-----TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 81 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEEE-----EETTTTEEEEEESSHHHHHHHHH-GGGEEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EECC-----CCccccEEEEEECCHHHHHHHHh-cCCCEeCCe
Confidence 3456789999999999999999999999997765222 2222 46789999999999999999995 999999999
Q ss_pred EEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEe
Q psy3345 656 QIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735 (787)
Q Consensus 656 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F 735 (787)
.|.|.++..... ....+.++|||+|||..+|+++|+++|++||.|..+ . .+|.++|||||+|
T Consensus 82 ~l~v~~~~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~--~~~~~~g~afV~f 143 (175)
T 1fje_B 82 EIKLEKPKGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S--QDGKSKGIAYIEF 143 (175)
T ss_dssp EEEEECCCCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----C--SSSSCCSEEEEEC
T ss_pred EEEEecCCCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----c--CCCCCceEEEEEE
Confidence 999999875433 122356899999999999999999999999988766 3 4789999999999
Q ss_pred cCHHHHHHHHHHhcCCeeecCceEEEEEcccc
Q psy3345 736 ITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767 (787)
Q Consensus 736 ~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~ 767 (787)
.+.++|.+|+..|| +..+.|++|.|+||.++
T Consensus 144 ~~~~~A~~A~~~l~-g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 144 KSEADAEKNLEEKQ-GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSHHHHHHHHHHHT-EEEETTEEEEEEECSSC
T ss_pred CCHHHHHHHHHHhC-CCEECCeEEEEEecCCC
Confidence 99999999999997 79999999999999876
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.3e-27 Score=233.80 Aligned_cols=177 Identities=22% Similarity=0.445 Sum_probs=148.9
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhc----C-------CeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKC----G-------PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVL 647 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~l 647 (787)
..++|||+|||+++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----------~~~g~afV~F~~~~~A~~Al-~l 70 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----------QDKNFAFLEFRSVDETTQAM-AF 70 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----------TTTTEEEEEESCSHHHHHHG-GG
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----------CCCCEEEEEeCCHHHHHHHH-Hh
Confidence 35899999999999999999999999 5 56666653 46799999999999999999 89
Q ss_pred CCCccCCeEEEEEecCccccchhhhhh------hccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEecccc
Q psy3345 648 QNSSLDEHQIELKRSNRNLESEATTVK------RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM 721 (787)
Q Consensus 648 ng~~l~g~~l~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~ 721 (787)
||..+.|+.|.|.++............ .........+.++|||+|||..+|+++|+++|++||.|.+++++++.
T Consensus 71 ~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 71 DGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp TTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred cCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 999999999999998754331111000 00111223567999999999999999999999999999999999885
Q ss_pred CCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 722 VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 722 ~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
.+|.++|||||+|.+.++|.+|+..|| +..+.|+.|.|+||.++..
T Consensus 151 -~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 151 -ATGLSKGYAFCEYVDINVTDQAIAGLN-GMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp -TTCSEEEEEEEEESSSSHHHHHHHHHT-TCEETTEECEEEESCCCCC
T ss_pred -CCCCcceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEEECCCCCC
Confidence 589999999999999999999999997 7999999999999998753
No 18
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=3.1e-27 Score=226.33 Aligned_cols=159 Identities=21% Similarity=0.333 Sum_probs=146.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
++++|||+|||+++|+++|+++|+.||+|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC------cEEEE
Q psy3345 415 PKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG------ITGLV 488 (787)
Q Consensus 415 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~~a~V 488 (787)
+.. ......+|+|+|||..+++++|+++|+.||.|..+.+.++. ++|||
T Consensus 82 ~~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 136 (168)
T 1b7f_A 82 PGG-------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 136 (168)
T ss_dssp CCS-------------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCc-------------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEE
Confidence 541 12346889999999999999999999999999999887643 68999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCC--eeEEEEEe
Q psy3345 489 EFLQKNQAKAAFNSLAYTKFKE--VPLYLEWA 518 (787)
Q Consensus 489 ~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~~ 518 (787)
+|.+.++|.+|+..|+|..+.| ++|.|.||
T Consensus 137 ~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 137 RYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999987 99999986
No 19
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-27 Score=224.23 Aligned_cols=159 Identities=24% Similarity=0.344 Sum_probs=144.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
++|||+|||+++|+++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999886 4789999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEEEEEe
Q psy3345 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEF 490 (787)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a~V~F 490 (787)
.. .......+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|
T Consensus 80 ~~-----------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f 136 (166)
T 3md3_A 80 QQ-----------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 136 (166)
T ss_dssp CC-----------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CC-----------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEe
Confidence 21 12345678999999999999999999999999999988643 35899999
Q ss_pred CCHHHHHHHHHHhcCCeeCCeeEEEEEec
Q psy3345 491 LQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519 (787)
Q Consensus 491 ~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 519 (787)
.+.++|.+|+..|+|..+.|++|.|.|+.
T Consensus 137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999999999984
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1e-26 Score=222.37 Aligned_cols=158 Identities=20% Similarity=0.354 Sum_probs=144.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
.++|||+|||+++|+++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEEEEE
Q psy3345 416 KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVE 489 (787)
Q Consensus 416 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a~V~ 489 (787)
.. ......+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+
T Consensus 82 ~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 82 SS-------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp CC-------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred Cc-------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEE
Confidence 41 2234678999999999999999999999999999888653 3689999
Q ss_pred eCCHHHHHHHHHHhcCCeeCCee--EEEEEe
Q psy3345 490 FLQKNQAKAAFNSLAYTKFKEVP--LYLEWA 518 (787)
Q Consensus 490 F~~~~~A~~A~~~l~~~~~~g~~--l~v~~~ 518 (787)
|.+.++|.+|+..|+|..+.|+. |.|.||
T Consensus 137 f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 137 FDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999964 888885
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.4e-26 Score=233.15 Aligned_cols=175 Identities=19% Similarity=0.245 Sum_probs=147.1
Q ss_pred CCCCCCeEEecCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q psy3345 576 EPEPDTTLYIKNLNF-NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDE 654 (787)
Q Consensus 576 ~~~~~~~l~V~NLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g 654 (787)
...+.++|||+|||+ ++++++|+++|+.||.|.++++..+. +|||||+|.+.++|.+|+..|||..+.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 345678999999999 99999999999999999999998753 5899999999999999999999999999
Q ss_pred eEEEEEecCccccchhh------hhh---------h------ccccccCCCCCEEEEecCCccCcHHHHHHHHHhcC-Ce
Q psy3345 655 HQIELKRSNRNLESEAT------TVK---------R------KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG-EL 712 (787)
Q Consensus 655 ~~l~v~~~~~~~~~~~~------~~~---------~------~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G-~I 712 (787)
+.|.|.++......... ... + ........+.++|||+|||..+|+++|+++|++|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 99999998754211000 000 0 00001124579999999999999999999999999 99
Q ss_pred eEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec-CceEEEEEcccc
Q psy3345 713 KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY-GRRLVLEWAEEA 767 (787)
Q Consensus 713 ~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~-Gr~l~v~~A~~~ 767 (787)
.+++++.+ .+|||||+|.+.++|.+|+..|| +..+. |++|.|+||++.
T Consensus 180 ~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l~-g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 180 KGFKFFQK------DRKMALIQMGSVEEAVQALIDLH-NHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEEECSS------STTCEEEEESSHHHHHHHHHHHT-TCBSSSSCBCEEEECSSC
T ss_pred eEEEEEEC------CCcEEEEEECCHHHHHHHHHHHC-CCccCCCCeEEEEEecCC
Confidence 99999664 37899999999999999999997 69999 999999999864
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=7.6e-27 Score=240.04 Aligned_cols=160 Identities=24% Similarity=0.422 Sum_probs=147.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
..+.++|||+|||+++|+++|+++|+.||.|.++.+.+ ++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------DRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------CCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 45568999999999999999999999999999999864 4699999999999999999999999999999
Q ss_pred EEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEec
Q psy3345 657 IELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736 (787)
Q Consensus 657 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~ 736 (787)
|.|.++. ++++|||+|||..+|+++|+++|+.||.|.+|+|+.+ .+|.++|||||+|.
T Consensus 88 l~v~~a~--------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~ 145 (261)
T 3sde_A 88 LRIRFAT--------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFA 145 (261)
T ss_dssp CEEEECC--------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEES
T ss_pred eEeeecc--------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeC
Confidence 9999975 2568999999999999999999999999999999998 58999999999999
Q ss_pred CHHHHHHHHHHhcCCeeec---CceEEEEEcccccc
Q psy3345 737 TKNEAKRAMKALCQSTHLY---GRRLVLEWAEEADN 769 (787)
Q Consensus 737 ~~~~A~~Al~~l~~~~~~~---Gr~l~v~~A~~~~~ 769 (787)
+.++|.+|+..||++..+. |++|.|.||.+.++
T Consensus 146 ~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 146 AKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred CHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 9999999999997667776 99999999987653
No 23
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=2.7e-26 Score=239.47 Aligned_cols=175 Identities=23% Similarity=0.367 Sum_probs=146.9
Q ss_pred CCCCCeEEecCCCCCCCHHHHH----HHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIR----RHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSL 652 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l 652 (787)
..+.++|||+|||+++++++|+ ++|++||.|.+|++.+ ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--------SLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--------CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 4567899999999999999976 8999999999999886 256899999999999999999999999999
Q ss_pred CCeEEEEEecCccccchhhh-----------------------hhh-c--------------------------------
Q psy3345 653 DEHQIELKRSNRNLESEATT-----------------------VKR-K-------------------------------- 676 (787)
Q Consensus 653 ~g~~l~v~~~~~~~~~~~~~-----------------------~~~-~-------------------------------- 676 (787)
.|+.|.|.++.......... ... .
T Consensus 78 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 78 YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 99999999986543210000 000 0
Q ss_pred -----------------------------------------cccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEE
Q psy3345 677 -----------------------------------------SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFV 715 (787)
Q Consensus 677 -----------------------------------------~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v 715 (787)
.......+.++|||+|||..+|+++|+++|+.||.|.+|
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE
Confidence 000122356889999999999999999999999999999
Q ss_pred EeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec-CceEEEEEccc
Q psy3345 716 RLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY-GRRLVLEWAEE 766 (787)
Q Consensus 716 ~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~-Gr~l~v~~A~~ 766 (787)
+|+.+ .+|||||+|.+.++|.+|+..|| +..+. |+.|+|+||+.
T Consensus 238 ~~~~~------~~g~afV~f~~~~~A~~A~~~l~-g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 238 RLVPG------RHDIAFVEFDNEVQAGAARDALQ-GFKITQNNAMKISFAKK 282 (282)
T ss_pred EEecC------CCcEEEEEeCCHHHHHHHHHHcC-CcEeCCCCEEEEEEecC
Confidence 99876 26899999999999999999997 69999 99999999973
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=2.5e-26 Score=226.05 Aligned_cols=168 Identities=17% Similarity=0.261 Sum_probs=140.9
Q ss_pred CCCccceEEEeCCCCCCCHHhHHHhhcCCCCc-ceeec-------ccceEEEeecChHhHHHHHhcCCcccCCeeEEEee
Q psy3345 220 HKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA-SVRTT-------FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYK 291 (787)
Q Consensus 220 ~~~~~~~v~v~nLp~~~te~di~~~F~~~g~v-~i~i~-------~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 291 (787)
.....++|||+|||+++|+++|+++|+.||.+ .+.++ ++|+|||+|.+.++|.+|+..++..+.|+.|.|..
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 35678999999999999999999999999988 77776 46899999999999999999989999999999953
Q ss_pred cccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecC
Q psy3345 292 YSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPID 371 (787)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 371 (787)
..+.... .........++|||+|||+++|+++|+++|+.||.|..|.++.+
T Consensus 89 ~~~~~~~-----------------------------~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 89 AVSREDS-----------------------------QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp CCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred ccCcccc-----------------------------cccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 1110000 00112234579999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC
Q psy3345 372 KETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417 (787)
Q Consensus 372 ~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 417 (787)
..+|.++|||||+|.+.++|.+|+.. +|..+.|+.|.|.++.+++
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 88899999999999999999999985 8999999999999998773
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1.2e-26 Score=228.58 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=144.9
Q ss_pred CCeEEecCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q psy3345 580 DTTLYIKNLNF-NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658 (787)
Q Consensus 580 ~~~l~V~NLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~ 658 (787)
.++|||+|||+ ++++++|+++|+.||.|.++++..+. +|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCeecCeEEE
Confidence 58999999999 99999999999999999999998643 58999999999999999999999999999999
Q ss_pred EEecCccccchhhhh---------------hhc------cccccCCCCCEEEEecCCccCcHHHHHHHHHhcC-CeeEEE
Q psy3345 659 LKRSNRNLESEATTV---------------KRK------SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG-ELKFVR 716 (787)
Q Consensus 659 v~~~~~~~~~~~~~~---------------~~~------~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G-~I~~v~ 716 (787)
|.++........... .+. .......+.++|||+|||..+|+++|+++|+.|| .|.+++
T Consensus 73 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~ 152 (198)
T 1qm9_A 73 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 152 (198)
T ss_dssp EEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEE
T ss_pred EEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEE
Confidence 999875421100000 000 0001124589999999999999999999999999 999999
Q ss_pred eccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec-CceEEEEEcccc
Q psy3345 717 LPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY-GRRLVLEWAEEA 767 (787)
Q Consensus 717 i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~-Gr~l~v~~A~~~ 767 (787)
++.+ .+|+|||+|.+.++|.+|+..|| +..+. |++|.|+||++.
T Consensus 153 i~~~------~~g~afV~f~~~~~A~~A~~~l~-g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 153 FFQK------DRKMALIQMGSVEEAVQALIDLH-NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ESST------TSSCEEEECSSHHHHHHHHHHHT-SSCCSSCCSCCEEEECCC
T ss_pred EEeC------CCcEEEEEeCCHHHHHHHHHHhc-CCccCCCCeEEEEeeccc
Confidence 9765 37899999999999999999997 69999 999999999864
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=5.3e-26 Score=227.41 Aligned_cols=174 Identities=23% Similarity=0.326 Sum_probs=148.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
...++|||+|||+++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34679999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEEE
Q psy3345 414 KPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGL 487 (787)
Q Consensus 414 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a~ 487 (787)
....... .............++|+|+|||..+++++|+++|+.||.|..|.+..+ .++||
T Consensus 106 ~~~~~~~--------------~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 171 (216)
T 2qfj_A 106 SNIGQAQ--------------PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGF 171 (216)
T ss_dssp SCCGGGH--------------HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEE
T ss_pred CCccccc--------------hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEE
Confidence 6541100 000001123456789999999999999999999999999999998754 46999
Q ss_pred EEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc
Q psy3345 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 488 V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 521 (787)
|+|.+.++|.+|+..|+|..+.|++|.|.|+...
T Consensus 172 V~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 172 IEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred EEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 9999999999999999999999999999999655
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=3.9e-26 Score=220.20 Aligned_cols=160 Identities=22% Similarity=0.405 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCC--CcceEEEEEEcCHHHHHHHHHHhCCceeC---CeEEE
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD--KTKGFALVTFLMPEHATQAYQHLDGTVFL---GRMLH 409 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l~ 409 (787)
+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++ .++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998775 67888
Q ss_pred EeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC-----Cc
Q psy3345 410 LIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GI 484 (787)
Q Consensus 410 v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-----~~ 484 (787)
+.++.... .......+|+|+|||..+++++|+++|+.||.|.++.+..+ ++
T Consensus 82 ~~~~~~~~------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g 137 (175)
T 3nmr_A 82 MKPADSEK------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRG 137 (175)
T ss_dssp EEECGGGC------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEE
T ss_pred Eccccccc------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEE
Confidence 87765431 12234678999999999999999999999999999988764 46
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCeeC---CeeEEEEEe
Q psy3345 485 TGLVEFLQKNQAKAAFNSLAYTKFK---EVPLYLEWA 518 (787)
Q Consensus 485 ~a~V~F~~~~~A~~A~~~l~~~~~~---g~~l~v~~~ 518 (787)
+|||+|.+.++|.+|+..|+|..+. +++|.|.|+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 138 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 8999999999999999999998776 499999997
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=8.6e-26 Score=217.14 Aligned_cols=159 Identities=18% Similarity=0.308 Sum_probs=145.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEE
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPF----G-------DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 514 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~ 514 (787)
..++|+|+|||+++++++|+++|+.| | .|.++.+..++++|||+|.++++|.+|+ .++|..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8889999999999999999999999999 8999999999999
Q ss_pred EEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCH
Q psy3345 515 LEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTE 594 (787)
Q Consensus 515 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~ 594 (787)
|.++.... .....++|||+|||+.+++
T Consensus 82 v~~~~~~~-----------------------------------------------------~~~~~~~l~v~nlp~~~t~ 108 (172)
T 2g4b_A 82 IRRPHDYQ-----------------------------------------------------PLPGAHKLFIGGLPNYLND 108 (172)
T ss_dssp EECCSSCC-----------------------------------------------------CCTTTTCEEEECCCTTCCH
T ss_pred ecCCcccC-----------------------------------------------------CCCCCCEEEEEcCCCcCCH
Confidence 99864320 1223689999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecC
Q psy3345 595 DSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSN 663 (787)
Q Consensus 595 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~ 663 (787)
++|+++|++||.|.++.+..++. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 109 ~~l~~~f~~~G~v~~v~i~~~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 109 DQVKELLTSFGPLKAFNLVKDSA-----TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTT-----TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCceEEEEEecCC-----CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999998764 57899999999999999999999999999999999999873
No 29
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=3.1e-26 Score=219.14 Aligned_cols=159 Identities=19% Similarity=0.384 Sum_probs=143.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
++++|||+|||+++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35689999999999999999999999999999999998899999999999999999999998 4678999999998876
Q ss_pred CCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC------CcEEEE
Q psy3345 415 PKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLV 488 (787)
Q Consensus 415 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~a~V 488 (787)
+. .......+|+|+|||+.+++++|+++|+.||.|..+.+..+ +++|||
T Consensus 80 ~~-------------------------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 134 (167)
T 2cjk_A 80 PR-------------------------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 134 (167)
T ss_dssp CH-------------------------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEE
T ss_pred ch-------------------------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEE
Confidence 42 12234678999999999999999999999999999998763 369999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc
Q psy3345 489 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 489 ~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 521 (787)
+|.+.++|.+|+. ++|..+.|++|.|.|+.+.
T Consensus 135 ~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 135 TYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999998 8999999999999998653
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=3.1e-25 Score=218.00 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=142.8
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHhhccCCCeeEEEecCC-CcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccc
Q psy3345 446 SKRIILVKNLP-YRTLPTDLKALFEPFGDLGRVLVPPY-GITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523 (787)
Q Consensus 446 ~~~~i~v~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 523 (787)
+.++|+|+||| +.+++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|+..|||..+.|++|.|.|+.....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46899999999 89999999999999999999998874 68999999999999999999999999999999999864421
Q ss_pred cccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhh
Q psy3345 524 AEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKK 603 (787)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~ 603 (787)
..... . ..+... ....+......................+.++|||+|||+++|+++|+++|++
T Consensus 83 ~p~~~-~----------~~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~ 146 (205)
T 3tyt_A 83 MPGQS-Y----------GLEDGS-----CSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE 146 (205)
T ss_dssp CCCSC-C----------BCTTSC-----BSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH
T ss_pred CCCcc-c----------ccccCC-----ccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh
Confidence 10000 0 000000 0000000000000000000000112346789999999999999999999999
Q ss_pred cCCe--EEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe----EEEEEec
Q psy3345 604 CGPI--ASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEH----QIELKRS 662 (787)
Q Consensus 604 ~G~v--~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~----~l~v~~~ 662 (787)
||.| .++++..+. +.++|||||+|.+.++|.+|+..|||..|.|+ ++.|+++
T Consensus 147 ~G~v~~~~v~~~~~~-------~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 147 LGVKRPTSVKVFSGK-------SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTCCCCSEEEECSCC-------SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCcceEEEEEEcCC-------CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999 899988653 24569999999999999999999999999886 5666664
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=4.2e-25 Score=217.58 Aligned_cols=182 Identities=16% Similarity=0.245 Sum_probs=149.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEE
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPF----G-------DLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLY 514 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~ 514 (787)
..++|+|+|||+++++++|+++|+.| | .|..+.+..++++|||+|.+.++|.+|+ .|+|..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 36899999999999999999999999 6 7888888889999999999999999999 8999999999999
Q ss_pred EEEecCccccccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCH
Q psy3345 515 LEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTE 594 (787)
Q Consensus 515 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~ 594 (787)
|.|+........... .+ .. ............+.++|||+|||+.+++
T Consensus 82 v~~~~~~~~~~~~~~------------~~-------------~~--------~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 128 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSE------------NP-------------SV--------YVPGVVSTVVPDSAHKLFIGGLPNYLND 128 (198)
T ss_dssp EECCCCCCCCCCSSS------------CS-------------SC--------CCTTSSCCCSSCCCCEEEEECCCTTCCH
T ss_pred EeCCCCCCCCCCCcC------------CC-------------cC--------CCCCCccCCCCCCCCEEEEeCCCCCCCH
Confidence 998854311000000 00 00 0000001123356789999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccc
Q psy3345 595 DSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNL 666 (787)
Q Consensus 595 ~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~ 666 (787)
++|+++|++||.|.++.+..+.. ++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.+..
T Consensus 129 ~~l~~~f~~~G~v~~~~~~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 129 DQVKELLTSFGPLKAFNLVKDSA-----TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHHTBSCEEEEEEEECTT-----TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHHcCCccEEEEeecCC-----CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999998764 57899999999999999999999999999999999999987654
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=8.7e-26 Score=217.75 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=142.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEe
Q psy3345 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI 411 (787)
Q Consensus 332 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 411 (787)
...+.++|||+|||+++|+++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999999999999999999998766 344455678899999999999999999995 99999999999999
Q ss_pred eCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEec--CCCcEEEEE
Q psy3345 412 PGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP--PYGITGLVE 489 (787)
Q Consensus 412 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~--~~~~~a~V~ 489 (787)
++.+... ......++|+|+|||+.+++++|+++|+.||.|..+ .. ..+++|||+
T Consensus 87 ~~~~~~~-----------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~ 142 (175)
T 1fje_B 87 KPKGRDS-----------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIE 142 (175)
T ss_dssp CCCCSSC-----------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEE
T ss_pred cCCCccc-----------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEE
Confidence 9886521 123356899999999999999999999999999887 22 255799999
Q ss_pred eCCHHHHHHHHHHhcCCeeCCeeEEEEEecCc
Q psy3345 490 FLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEG 521 (787)
Q Consensus 490 F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 521 (787)
|.+.++|.+|+..|+|..+.|++|.|.|+.+.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 143 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999999653
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1.8e-24 Score=217.84 Aligned_cols=185 Identities=23% Similarity=0.218 Sum_probs=148.3
Q ss_pred ccCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 332 DIAESGRIFVRNLSY-TVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 332 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
...++++|||+|||+ ++|+++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998764 689999999999999999999999999999999
Q ss_pred eeCCCCCCCCCC----C-CCc-ccccc---cc-ccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCC-CeeEEEe
Q psy3345 411 IPGKPKENEGNV----D-GKV-HCCIS---ER-KLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLV 479 (787)
Q Consensus 411 ~~~~~~~~~~~~----~-~~~-~~a~~---~~-~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i 479 (787)
.++......... . ... ..... .. ............+.++|+|+|||..+++++|+++|+.|| .|..|.+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 998765111000 0 000 00000 00 000000111234579999999999999999999999999 9999999
Q ss_pred -cCCCcEEEEEeCCHHHHHHHHHHhcCCeeC-CeeEEEEEecCc
Q psy3345 480 -PPYGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAPEG 521 (787)
Q Consensus 480 -~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~~~~~ 521 (787)
+.++++|||+|.+.++|.+|+..|+|..+. |++|.|.|+.+.
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 447889999999999999999999999999 999999999654
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=1.4e-24 Score=226.41 Aligned_cols=184 Identities=22% Similarity=0.340 Sum_probs=147.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLT----KLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRML 408 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 408 (787)
..+.++|||+|||+++|+++|+ ++|+.||.|.+|.++. +|+++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999976 8999999999999875 58899999999999999999999999999999999
Q ss_pred EEeeCCCCCCC-CCCCCC-------------------------------c-----ccc-----------------cc---
Q psy3345 409 HLIPGKPKENE-GNVDGK-------------------------------V-----HCC-----------------IS--- 431 (787)
Q Consensus 409 ~v~~~~~~~~~-~~~~~~-------------------------------~-----~~a-----------------~~--- 431 (787)
.|.++...... ....+. . ... .+
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99998664210 000000 0 000 00
Q ss_pred --------------c---------------cccchhhhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCC
Q psy3345 432 --------------E---------------RKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY 482 (787)
Q Consensus 432 --------------~---------------~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 482 (787)
. ...............++|+|+|||..+++++|+++|+.||.|.+|.+.++
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 0 00000000112335688999999999999999999999999999999886
Q ss_pred C-cEEEEEeCCHHHHHHHHHHhcCCeeC-CeeEEEEEec
Q psy3345 483 G-ITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAP 519 (787)
Q Consensus 483 ~-~~a~V~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~~~ 519 (787)
+ ++|||+|.+.++|.+|+..|+|..+. |++|.|.|+.
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 6 89999999999999999999999999 9999999984
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.7e-24 Score=213.18 Aligned_cols=182 Identities=21% Similarity=0.228 Sum_probs=145.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 335 ESGRIFVRNLSY-TVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 335 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
.+++|||+|||+ ++|+++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998764 679999999999999999999999999999999998
Q ss_pred CCCCCCCCC---C-CCccccccccccchh------hhhhhcCCCCEEEEeCCCCCCCHHHHHHhhccCC-CeeEEEecC-
Q psy3345 414 KPKENEGNV---D-GKVHCCISERKLDAF------NQVVEARSKRIILVKNLPYRTLPTDLKALFEPFG-DLGRVLVPP- 481 (787)
Q Consensus 414 ~~~~~~~~~---~-~~~~~a~~~~~~~~~------~~~~~~~~~~~i~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~- 481 (787)
......... . .......+......+ .......+.++|+|+|||..+++++|+++|+.|| .|..+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 765211000 0 000000000000000 0011234578999999999999999999999999 999999954
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCeeC-CeeEEEEEecCc
Q psy3345 482 YGITGLVEFLQKNQAKAAFNSLAYTKFK-EVPLYLEWAPEG 521 (787)
Q Consensus 482 ~~~~a~V~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~~~~~ 521 (787)
++++|||+|.+.++|.+|+..|+|..+. |++|.|.|+.+.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7789999999999999999999999999 999999998654
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=5.9e-24 Score=218.47 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=144.9
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccc
Q psy3345 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 523 (787)
....++|+|+|||+++|+++|+++|+.||.|..|.+.+++++|||+|.+.++|.+|+..|+|..+.|++|.|.|+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999832
Q ss_pred cccccccccccccccccccccchhhhhcccccccccCCCcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhh
Q psy3345 524 AEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKK 603 (787)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~ 603 (787)
.++|||+|||+.+|+++|+++|+.
T Consensus 96 --------------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 96 --------------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQ 119 (261)
T ss_dssp --------------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGG
T ss_pred --------------------------------------------------------CCcccccCCCCCCCHHHHHHHHHh
Confidence 368999999999999999999999
Q ss_pred cCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCccC---CeEEEEEecCccc
Q psy3345 604 CGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQ-NSSLD---EHQIELKRSNRNL 666 (787)
Q Consensus 604 ~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~ln-g~~l~---g~~l~v~~~~~~~ 666 (787)
||.|.++.++.+. ++.++|||||+|.+.++|.+|+..|| |..+. |++|.|.++....
T Consensus 120 ~G~i~~v~i~~~~------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 120 FGPVEKAVVVVDD------RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp GSCEEEEEEEEET------TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred cCCeEEEEeeeCC------CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999885 37899999999999999999999995 44544 9999999987653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=8.2e-21 Score=179.23 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=114.2
Q ss_pred EEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEE
Q psy3345 609 SVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKI 688 (787)
Q Consensus 609 ~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 688 (787)
++.|..+. ..++|||||+|.+.++|.+|+..+++....+..+.+.......... .............+.++|
T Consensus 2 ~~kl~ln~-------~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNG-------KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT-EGSHHHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEEC-------SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE-CCCCCSSCCCCCCBCCEE
T ss_pred cEEEEecC-------ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc-ccccccccccCCCCCCEE
Confidence 35555544 2689999999999999999999988754433333332221111100 000011112223467899
Q ss_pred EEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 689 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 689 ~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
||+|||+.+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|+||.+..
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMD-GAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHST-TEESSSSEEEEEEECCSS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEEECCCCC
Confidence 999999999999999999999999999999985 589999999999999999999999997 799999999999998654
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=4.5e-20 Score=172.26 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=115.0
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh-CCCccCCeEEEEEecCccccchhh--hhhhccccccCCCCCEEEEecCCccCcHHH
Q psy3345 625 LSMGYGFVQFYTRESLNQALKVL-QNSSLDEHQIELKRSNRNLESEAT--TVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701 (787)
Q Consensus 625 ~s~G~afV~F~~~e~A~~A~~~l-ng~~l~g~~l~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nLp~~~t~~d 701 (787)
..+|+++|+|.+.++|.+|+..+ ||..++| .+.+.++......... ............+.++|||+|||+.+|+++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 57899999999999999999999 9999999 9999988654331111 001112223345789999999999999999
Q ss_pred HHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 702 L~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+..|| +..+.|++|+|+||.++.
T Consensus 90 l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVRELD-GRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHS-SSCSSSSCCEEEECCCCC
T ss_pred HHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEEcCCCC
Confidence 9999999999999999887 58999999999999999999997 699999999999998764
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.6e-19 Score=159.92 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Q psy3345 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658 (787)
Q Consensus 579 ~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~ 658 (787)
..++|||+|||+++++++|+++|++||.|.+|+|+++.. .++|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 357899999999999999999999999999999998764 4899999999999999999999999999999999
Q ss_pred EEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHH
Q psy3345 659 LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700 (787)
Q Consensus 659 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 700 (787)
|.++........ .........++|||+|||+.+|++
T Consensus 77 V~~a~~~~~~~~------~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 77 VGRFKSRKEREA------ELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp EEESSCCCC---------------------------------
T ss_pred EEECCCcccccc------ccccccCCCCceEeCCCCCCcccc
Confidence 999876443111 111222345689999999999986
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=151.85 Aligned_cols=82 Identities=27% Similarity=0.552 Sum_probs=77.9
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
..+++|||+|||..+|+++|+++|++||.|.+|+|+++. .+|+++|||||+|.++++|.+|++.|| +..+.|++|+|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAKDAERAINTLN-GLRLQSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS-SSCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC-CCCcccccEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 467899999999999999999999999999999999985 689999999999999999999999997 799999999999
Q ss_pred Eccc
Q psy3345 763 WAEE 766 (787)
Q Consensus 763 ~A~~ 766 (787)
||+|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9987
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=9e-19 Score=165.17 Aligned_cols=137 Identities=24% Similarity=0.342 Sum_probs=104.0
Q ss_pred ccceEEEeecChHhHHHHHh-cCCcc-cCCeeEEEeecccCCccccCCCcCCCCchhhhhhhhcccccccchhhhhcccC
Q psy3345 257 FLGMAYIGFKDEKNCNKALN-KNKSF-WKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIA 334 (787)
Q Consensus 257 ~~g~afV~F~~~~~A~~Al~-~~~~~-l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (787)
.+|+|||+|.+.++|++|+. +++.. +.|...... ...... .+. ............
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~---~~~~~~-------------------~~~-~~~~~~~~~~~~ 68 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDD---ATKTFT-------------------VTE-GSHHHHHHMDVE 68 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEET---TTTEEE-------------------EEC-CCCCSSCCCCCC
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccC---cccccc-------------------ccc-cccccccccCCC
Confidence 57999999999999999997 44322 333222210 000000 000 000000111234
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
..++|||+|||+++|+++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CC
Q psy3345 415 PK 416 (787)
Q Consensus 415 ~~ 416 (787)
+.
T Consensus 149 ~~ 150 (158)
T 2kn4_A 149 YG 150 (158)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=9.5e-19 Score=154.89 Aligned_cols=108 Identities=21% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
..+|||+|||+++|+++|+++|+.||.|.+|.|+.+. +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999885 55899999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCCHH
Q psy3345 416 KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPT 462 (787)
Q Consensus 416 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t~~ 462 (787)
+..... .........++|||+|||+++|++
T Consensus 83 ~~~~~~-----------------~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 83 RKEREA-----------------ELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCC--------------------------------------------
T ss_pred cccccc-----------------ccccccCCCCceEeCCCCCCcccc
Confidence 522110 011123345679999999999875
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=150.12 Aligned_cols=84 Identities=26% Similarity=0.510 Sum_probs=77.9
Q ss_pred CCEEEEecCCccCcHHHHHHHHHhcC-CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 685 GSKILVRNIPFQAKQSEVEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 685 ~~~l~V~nLp~~~t~~dL~~~F~~~G-~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
+++|||+|||+.+|+++|+++|++|| .|.+|+|+++. .+|.++|||||+|.++++|.+||+.++|+..+.||+|.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~-~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK-SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS-SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC-CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 36899999999999999999999999 89999999986 68999999999999999999999988767789999999999
Q ss_pred cccccc
Q psy3345 764 AEEADN 769 (787)
Q Consensus 764 A~~~~~ 769 (787)
|.|+..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 998764
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=148.31 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=76.4
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
..++|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.++++|.+|++.||+..|+||.|.
T Consensus 18 ~gt~lfV~n-----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNY-----LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCSEEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 356799999 99999999999999999999999999988 699999999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.+|+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999986
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=145.79 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=81.5
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|+++. .+|+++|||||+|.+.++|.+|++.|| +..+.|+.|.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~-~tg~~rG~aFV~f~~~~~A~~Ai~~ln-g~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP-RTRKHLGLARVLFTSTRGAKETVKNLH-LTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCceeeEEEEEECCHHHHHHHHHHhC-CCEECCeEEEEE
Confidence 467899999999999999999999999999999999986 679999999999999999999999997 799999999999
Q ss_pred EccccccHHHH
Q psy3345 763 WAEEADNVEDI 773 (787)
Q Consensus 763 ~A~~~~~~~~~ 773 (787)
||........+
T Consensus 82 ~a~~~~~~~~~ 92 (110)
T 3s8s_A 82 LDIKGQQRMKY 92 (110)
T ss_dssp ECSTTHHHHHH
T ss_pred ECCCCcHHHHH
Confidence 99876654443
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=145.79 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=77.8
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..|...|+|.| ||+++|+++|+++|+.||.|.+|+|++++ +|+++|||||.|.+.++|++||+.||+..|+||.
T Consensus 3 ~~p~~~lfV~n-----L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 3 QIPLKEVTFAR-----LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CSCCCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEEC-----CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35677899999 99999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|..
T Consensus 78 i~V~~a~~ 85 (110)
T 3s8s_A 78 IHAQLDIK 85 (110)
T ss_dssp CEEEECST
T ss_pred EEEEECCC
Confidence 99999974
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=144.92 Aligned_cols=79 Identities=15% Similarity=0.316 Sum_probs=74.0
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccC-ceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhc-cCccCCceE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKG-TVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFN-NTYVFSSRI 88 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~-~~~~~~~~i 88 (787)
|+.|+|+| ||+++||+||+++|+.|| .|.+|+|++++ +|+++|||||.|.+.++|.+||+.++ +..|+||.|
T Consensus 1 S~~i~v~n-----Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRM-----LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEET-----CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeC-----CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 57899999 999999999999999999 89999999988 69999999999999999999999874 567999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.+|.+
T Consensus 76 ~V~~a~~ 82 (91)
T 2lxi_A 76 SMHYSDP 82 (91)
T ss_dssp EEECCCS
T ss_pred EEEEcCC
Confidence 9999987
No 48
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=3.4e-17 Score=152.69 Aligned_cols=135 Identities=20% Similarity=0.259 Sum_probs=109.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHh-cCCeeCCeeEEEEEecCccccccccccccccccccccccccchhhhhcccccccccCC
Q psy3345 483 GITGLVEFLQKNQAKAAFNSL-AYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQG 561 (787)
Q Consensus 483 ~~~a~V~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (787)
.|+++|+|.+.++|++|+..+ +|..+.| ++.+.++............
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~------------------------------- 60 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH------------------------------- 60 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------------------
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------------------
Confidence 478999999999999999999 9999999 9999987543110000000
Q ss_pred CcccccccccccccCCCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHH
Q psy3345 562 VPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641 (787)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~ 641 (787)
...........+.++|||+|||+.+++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.
T Consensus 61 ------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 61 ------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------PPGFAFVEFEDPRDAA 124 (150)
T ss_dssp ------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------SCSEEEEEESSHHHHH
T ss_pred ------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------CCcEEEEEECCHHHHH
Confidence 000011223456789999999999999999999999999999999864 4699999999999999
Q ss_pred HHHHHhCCCccCCeEEEEEecCcc
Q psy3345 642 QALKVLQNSSLDEHQIELKRSNRN 665 (787)
Q Consensus 642 ~A~~~lng~~l~g~~l~v~~~~~~ 665 (787)
.|+..|||..++|+.|.|.++.+.
T Consensus 125 ~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 125 DAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999998754
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=140.73 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCC--eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCe----eecC
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGE--LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST----HLYG 756 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~--I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~----~~~G 756 (787)
....+|||+|||+.+|+++|+++|++||. |.+|+|++++ .+|++||||||+|.++++|.+|++.||+ . .+.|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~-~tg~srG~aFV~f~~~~~A~~Ai~~lng-~~~~~~i~G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK-QTQQNRGFAFVQLSSAMDASQLLQILQS-LHPPLKIDG 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS-SSSSCSSEEEEECSSSHHHHHHHHHHHS-SSSCEEETT
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC-CCCCCceEeEEEECCHHHHHHHHHHhcC-CCCCceECC
Confidence 45678999999999999999999999995 6789999986 6899999999999999999999999984 4 5899
Q ss_pred ceEEEEEccc
Q psy3345 757 RRLVLEWAEE 766 (787)
Q Consensus 757 r~l~v~~A~~ 766 (787)
|+|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999973
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=137.50 Aligned_cols=84 Identities=19% Similarity=0.367 Sum_probs=76.2
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
||..+...|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..++|
T Consensus 1 Gp~~~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 1 GPLGSHFHVFVGD-----LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp -----CEEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCceEEEEeC-----CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5777888999999 99999999999999999999999999986 89999999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|++
T Consensus 76 ~~l~v~~a~~ 85 (87)
T 3bs9_A 76 RQIRTNWATR 85 (87)
T ss_dssp EECEEEEEC-
T ss_pred eEEEEEecCC
Confidence 9999999986
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=138.77 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=81.0
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
++...++.+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+
T Consensus 2 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 2 SSGSSGSGRLFVRN-----LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCCCCSCEEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44556788999999 99999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CceEEEEEccCC
Q psy3345 85 SSRIKVEKCSNL 96 (787)
Q Consensus 85 ~~~i~v~~~~~~ 96 (787)
|+.|.|.++++.
T Consensus 77 g~~l~V~~a~~~ 88 (99)
T 1whw_A 77 GRMLHVLPSTIK 88 (99)
T ss_dssp SCEEEEEECCCC
T ss_pred CcEEEEEEcCCC
Confidence 999999999973
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=7.1e-17 Score=133.95 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=77.1
Q ss_pred CCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEc
Q psy3345 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 685 ~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A 764 (787)
+++|||+|||..+|+++|+++|++||.|.+++++++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|+||
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNAMDSMQ-GQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHHT-TCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC-CCCCccceEEEEECCHHHHHHHHHHhc-CCeeCCcEEEEEec
Confidence 3689999999999999999999999999999999885 689999999999999999999999997 79999999999999
Q ss_pred cccc
Q psy3345 765 EEAD 768 (787)
Q Consensus 765 ~~~~ 768 (787)
.+++
T Consensus 79 ~~~~ 82 (83)
T 3md1_A 79 AKLE 82 (83)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 9875
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=140.32 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=72.7
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCc--eEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccC----ccCC
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGT--VTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNT----YVFS 85 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~----~~~~ 85 (787)
+.|+|+| ||+++|+++|+++|+.||. |.+|+|++|+ +|+++|||||.|.+.++|++||+.||+. .|+|
T Consensus 10 ~tlfV~n-----L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 10 DTIILRN-----IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CEEEEES-----CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CEEEEeC-----CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 5699999 9999999999999999994 6799999988 6999999999999999999999999997 5999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
|.|.|.+|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=8.1e-17 Score=134.95 Aligned_cols=83 Identities=25% Similarity=0.527 Sum_probs=75.6
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.+.++|||+|||..+|+++|+++|+.||.|.+++++.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM-ATGKSKGYGFVSFFNKWDAENAIQQMG-GQWLGGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEE
Confidence 467899999999999999999999999999999999885 589999999999999999999999997 699999999999
Q ss_pred Ecccc
Q psy3345 763 WAEEA 767 (787)
Q Consensus 763 ~A~~~ 767 (787)
||+++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99864
No 55
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.5e-17 Score=151.39 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=80.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHH
Q psy3345 628 GYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFK 707 (787)
Q Consensus 628 G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~ 707 (787)
-++|++|.+...|..|+..++|....|+.- +.+.. ......+.++|||+|||..+|+++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~--------------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR--------------PPPDVEGMTSLKVDNLTYRTSPDTLRRVFE 69 (135)
T ss_dssp -------------------------------CCSCC--------------SCSSGGGCCCEEEECCCSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC--------------CCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 367888899999999999998877666531 11111 112234578999999999999999999999
Q ss_pred hcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 708 AFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 708 ~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
.||.|..|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|+||++..
T Consensus 70 ~~G~i~~v~i~~~~-~~g~~~G~afV~F~~~~~A~~Ai~~l~-g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 70 KYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMD-GAVLDGRELRVQMARYGR 128 (135)
T ss_dssp GGSCCSEEECCCCS-SSSSCCSCCEEECSCHHHHHHHHTTTT-TCCSSSSCCEEEECCCCC
T ss_pred hcCCEEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcC-CCEECCEEEEEEECCCCC
Confidence 99999999999885 579999999999999999999999997 799999999999998654
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=6.1e-17 Score=135.04 Aligned_cols=83 Identities=24% Similarity=0.399 Sum_probs=77.8
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
++..++..|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|
T Consensus 2 ~~~~~~~~l~V~n-----l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 2 SMATTKRVLYVGG-----LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp -CCCCSSEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCEEEEEC-----CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4566788999999 99999999999999999999999999985 89999999999999999999999999999999
Q ss_pred ceEEEEEcc
Q psy3345 86 SRIKVEKCS 94 (787)
Q Consensus 86 ~~i~v~~~~ 94 (787)
+.|.|.+|+
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999885
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=138.44 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC-CeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-STHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~-~~~~~Gr~l~ 760 (787)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|..|+..|++ +..+.|++|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999999999999999999999999999875 79999999999999999999863 4789999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.++.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99998665
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=3e-17 Score=141.24 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=78.9
Q ss_pred CCCEEEEecCCc------cCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC-
Q psy3345 684 TGSKILVRNIPF------QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG- 756 (787)
Q Consensus 684 ~~~~l~V~nLp~------~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G- 756 (787)
.+++|||.|||. .+++++|+++|++||.|.+|+|+++. .+|+++|||||+|.++++|.+|+..|| +..+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~-~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE-ATGKTKGFLFVECGSMNDAKKIIKSFH-GKRLDLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET-TTTEECSEEEEEESSHHHHHHHHHHHT-TCBSSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC-CCCccceEEEEEECCHHHHHHHHHHhC-CcccCCC
Confidence 467899999999 99999999999999999999999985 679999999999999999999999997 799999
Q ss_pred ceEEEEEccccccH
Q psy3345 757 RRLVLEWAEEADNV 770 (787)
Q Consensus 757 r~l~v~~A~~~~~~ 770 (787)
+.|.|.||.+.+..
T Consensus 83 r~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 83 HRLFLYTMKDVERY 96 (100)
T ss_dssp CBCEEEESHHHHHH
T ss_pred eEEEEEECchhhhh
Confidence 99999999876543
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=137.09 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=79.6
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.+..+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.+++|+++|||||.|.+.++|.+|++.||+..|+|+
T Consensus 12 ~~~~~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 12 STSLEKHKLFISG-----LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp SSCCCCSCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred ccCCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3445678899999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.++++
T Consensus 87 ~l~v~~a~~ 95 (100)
T 2do4_A 87 IIKVAISNS 95 (100)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 999999987
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.5e-17 Score=138.79 Aligned_cols=77 Identities=14% Similarity=0.280 Sum_probs=70.6
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccC--ceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKG--TVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
.|+|.| ||+++|+++|+++|+.|| .|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..|+||.|.|
T Consensus 3 ~l~V~n-----L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 3 ALYIGN-----LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp -CEEES-----CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 577777 999999999999999999 99999999997 8999999999999999999999999999999999999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
..+.+
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 99987
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=2.1e-16 Score=134.99 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=80.0
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
|+++|||+|||..+|+++|+++|+.||.|.+++|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|+.|.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP-QTGRSKGYAFIEFRDLESSASAVRNLN-GYQLGSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-TTCCBCSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCccceEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEEE
Confidence 46899999999999999999999999999999999885 579999999999999999999999997 7999999999999
Q ss_pred ccccccHH
Q psy3345 764 AEEADNVE 771 (787)
Q Consensus 764 A~~~~~~~ 771 (787)
|.+.....
T Consensus 79 a~~~~~~~ 86 (96)
T 2x1f_A 79 SSNSDISG 86 (96)
T ss_dssp CSCSSGGG
T ss_pred cCCCCCCC
Confidence 99877543
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=136.72 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=80.1
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHH----HHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLK----AKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
+|+|..+..+|+|.| ||+.+|+++|+ ++|+.||.|.+|+|+.++.+ +|||||.|.+.++|++|++.||+
T Consensus 2 ss~~~~~~~~l~V~n-----L~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 2 SSGSSGNGADVQVSN-----IDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp CCCCCSSCEEEEEES-----CCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEEC-----CCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCC
Confidence 577888889999999 99999999999 99999999999999998766 89999999999999999999999
Q ss_pred CccCCceEEEEEccC
Q psy3345 81 TYVFSSRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~~~i~v~~~~~ 95 (787)
..|+||.|.|.+|++
T Consensus 75 ~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 75 YKIGSKKILVSLATG 89 (96)
T ss_dssp EEETTEEEEEEECCC
T ss_pred CEECCeEEEEEEcCC
Confidence 999999999999987
No 63
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=134.50 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=72.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCee--ecCce
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH--LYGRR 758 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~--~~Gr~ 758 (787)
...|+++|||+|||+.+|+++|+++|++||.|.++++++. ||||||+|.+.++|.+|+..|+ +.. +.||+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~ln-~~~~~i~Gr~ 88 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNAVNYAA-DNQIYIAGHP 88 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHH-HSCEEETTEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhc-CCCceeCCcE
Confidence 3457899999999999999999999999999999999764 7899999999999999999997 454 78999
Q ss_pred EEEEEccccc
Q psy3345 759 LVLEWAEEAD 768 (787)
Q Consensus 759 l~v~~A~~~~ 768 (787)
|+|+||+.++
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999998764
No 64
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.6e-17 Score=139.27 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.+..+...|+|.| ||+++|++||+++|+.||.| +|+|+++++|+++|||||.|.+.++|++||+ +|+..|+||
T Consensus 10 ~~~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 10 FQSTTGHCVHMRG-----LPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp CCCSSSCEEEEES-----CCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 4556677899999 99999999999999999954 9999999999999999999999999999996 699999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|+|..+.+
T Consensus 83 ~i~V~~~~~ 91 (102)
T 1wez_A 83 YVELFLNST 91 (102)
T ss_dssp CCEEEEECC
T ss_pred EEEEEECCC
Confidence 999999886
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.5e-16 Score=132.64 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=76.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|++||.|.+++++++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-ETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET-TTTEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC-CCCccccEEEEEECCHHHHHHHHHHhC-CCEECCcEEEE
Confidence 3467899999999999999999999999999999998885 688999999999999999999999997 79999999999
Q ss_pred EEcc
Q psy3345 762 EWAE 765 (787)
Q Consensus 762 ~~A~ 765 (787)
+||+
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 66
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=134.58 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=78.7
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+.++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 2 ~~~~~~l~v~n-----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 2 SSGSSGLYVGS-----LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CSCCCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 45678899999 99999999999999999999999999987 6999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q psy3345 88 IKVEKCSNL 96 (787)
Q Consensus 88 i~v~~~~~~ 96 (787)
|.|.++++.
T Consensus 77 l~V~~a~~~ 85 (95)
T 2dnz_A 77 MRVGHVTER 85 (95)
T ss_dssp CEEEESSCC
T ss_pred EEEEEcccc
Confidence 999999873
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=136.42 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=79.9
Q ss_pred CCCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEE--------EEEEecC-CCCcceEEEEEecCHHHHHHH
Q psy3345 4 HLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTD--------VQLKYTT-EGKFRRFAFIGYHREDQAQAA 74 (787)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~-~g~~~g~afv~f~~~~~a~~a 74 (787)
....|..+...|+|.| ||+++|+++|+++|+.||.|.. |+|+.++ +|+++|||||.|.+.++|++|
T Consensus 5 ~~~~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 79 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQG-----LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 79 (99)
T ss_dssp CSCCSCCCCSEEEEEC-----CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHH
T ss_pred CCCCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHH
Confidence 4455666788899999 9999999999999999999999 9999987 799999999999999999999
Q ss_pred HHHhccCccCCceEEEEEcc
Q psy3345 75 LDYFNNTYVFSSRIKVEKCS 94 (787)
Q Consensus 75 ~~~~~~~~~~~~~i~v~~~~ 94 (787)
++.||+..|+||.|.|.+|+
T Consensus 80 i~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 80 IDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHTTCBSSSSBCEEEECC
T ss_pred HHHhCCCEeCCcEEEEEecC
Confidence 99999999999999999884
No 68
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=139.28 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=72.5
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
..|+|+| |||++|++||++||+.| .|.+|+|+++++|+++|||||.|.+.++|.+|| .+|+..|+||+|+|..
T Consensus 17 ~~v~V~n-----Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 17 LYVSVHG-----MPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HEEEEEC-----CCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CEEEEeC-----CCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 4699999 99999999999999999 799999999999999999999999999999999 5799999999999999
Q ss_pred ccC
Q psy3345 93 CSN 95 (787)
Q Consensus 93 ~~~ 95 (787)
|.+
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 875
No 69
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.2e-16 Score=151.31 Aligned_cols=136 Identities=20% Similarity=0.326 Sum_probs=79.9
Q ss_pred EEeCCHHHHHHHHHHhCCCccC--CeEEEEEecCccccch--h----hhhhhccccccCCCCCEEEEecCCccCcHHHHH
Q psy3345 632 VQFYTRESLNQALKVLQNSSLD--EHQIELKRSNRNLESE--A----TTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVE 703 (787)
Q Consensus 632 V~F~~~e~A~~A~~~lng~~l~--g~~l~v~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~ 703 (787)
.+|.+.++|..|+..+++.... |+.+....+.+..... . ......+.+....+.++|||.|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6789999999999999887665 6666655533221100 0 000012223334567899999999999999999
Q ss_pred HHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccccc
Q psy3345 704 ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 704 ~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~ 769 (787)
++|+.||.|..|.|+.+. .+|.++|||||+|.+.++|..||..|| +..|.|+.|.|.||.++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDR-RTGFSKGYALVEYETHKQALAAKEALN-GAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECT-TTSSEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecC-CCCcEeeEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEEEecCCCC
Confidence 999999999999999885 689999999999999999999999997 7999999999999987664
No 70
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.6e-16 Score=128.49 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
.+..|+|+||++.+|+++|+++|.+||.|.++++.. ++|||||+|.++++|.+|++.|| +..++||.|+|++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln-~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALN-NCVLANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHT-TEEETTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhc-CCEECCcEEEEEE
Confidence 467899999999999999999999999999999855 58999999999999999999997 6999999999999
Q ss_pred ccc
Q psy3345 764 AEE 766 (787)
Q Consensus 764 A~~ 766 (787)
|.+
T Consensus 78 A~e 80 (89)
T 2wbr_A 78 PSE 80 (89)
T ss_dssp CCH
T ss_pred CCH
Confidence 953
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=135.39 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=78.7
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
++++..++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|
T Consensus 9 ~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSN-----LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCSCCCCTTSEEEES-----CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 344556778899999 99999999999999999999999999987 589999999999999999999999999999
Q ss_pred CCceEEEEEcc
Q psy3345 84 FSSRIKVEKCS 94 (787)
Q Consensus 84 ~~~~i~v~~~~ 94 (787)
.|+.|.|.+|+
T Consensus 84 ~g~~l~v~~ak 94 (94)
T 2e5h_A 84 FGRVIKASIAI 94 (94)
T ss_dssp TTEEEEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999985
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=137.79 Aligned_cols=84 Identities=20% Similarity=0.355 Sum_probs=78.8
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.+..++.+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|
T Consensus 21 ~~~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 21 KGSAGPMRLYVGS-----LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp CSCSSCEEEEEEC-----CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred cCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3445677899999 99999999999999999999999999986 79999999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|++
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9999999987
No 73
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=135.05 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=80.2
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS-LTKKPKGFAFVTFMFPEHAVKAYAEVD-GQVFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT-TTCCCCSEEEEEESSHHHHHHHHHHTT-TEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-CCCCcCeEEEEEECCHHHHHHHHHHhC-CCEECCcEEEE
Confidence 3467899999999999999999999999999999999985 589999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99998765
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=134.98 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=79.5
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
++.+..+..+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++ ||+..|
T Consensus 3 ~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~ 76 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGG-----IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI 76 (99)
T ss_dssp CCCCCSSCCEEEEES-----CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS
T ss_pred CCCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE
Confidence 345556788899999 99999999999999999999999999987 69999999999999999999999 899999
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|.++.+
T Consensus 77 ~g~~l~V~~a~~ 88 (99)
T 2dgs_A 77 MGKKVEVKRAEP 88 (99)
T ss_dssp SSCBCEEEECCC
T ss_pred CCeEEEEEECCC
Confidence 999999999987
No 75
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=137.12 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=80.9
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
+++...+...|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..|
T Consensus 5 ~~~~~~~~~~l~v~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 5 SSGMASDEGKLFVGG-----LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp CCCCCCCCSEEEEES-----CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 455666788999999 99999999999999999999999999987 789999999999999999999999999999
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|.+|++
T Consensus 80 ~g~~l~v~~a~~ 91 (102)
T 1x5s_A 80 DGRQIRVDQAGK 91 (102)
T ss_dssp TSCCCEEEEEEC
T ss_pred CCeEEEEEECCC
Confidence 999999999997
No 76
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=134.16 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=79.1
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
..+..++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+
T Consensus 9 ~~~~~~~~~l~v~n-----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 9 RANPDPNCCLGVFG-----LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCSCCGGGCEEEES-----CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34456778899999 99999999999999999999999999987 5899999999999999999999999999999
Q ss_pred CceEEEEEccC
Q psy3345 85 SSRIKVEKCSN 95 (787)
Q Consensus 85 ~~~i~v~~~~~ 95 (787)
|+.|.|.+|+.
T Consensus 84 g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 GRRIRVSGPSS 94 (95)
T ss_dssp TEEEEEECCSC
T ss_pred CEEEEEEecCC
Confidence 99999999874
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=134.16 Aligned_cols=85 Identities=25% Similarity=0.470 Sum_probs=79.3
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.+.++|||.|||..+|+++|+++|++||.|.+++++++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS-DTGRSKGYGFITFSDSECARRALEQLN-GFELAGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS-SSCCCCSEEEEEESCHHHHHHHHHHHT-TCCSSSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC-CCCceeeEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEE
Confidence 467899999999999999999999999999999999986 579999999999999999999999997 799999999999
Q ss_pred Ecccccc
Q psy3345 763 WAEEADN 769 (787)
Q Consensus 763 ~A~~~~~ 769 (787)
||.++..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9987654
No 78
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=135.03 Aligned_cols=85 Identities=21% Similarity=0.414 Sum_probs=79.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMD-GMTIKENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT-TEESSSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhC-CCEECCEEEE
Confidence 34567899999999999999999999999999999999984 89999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.+..
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99999765
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=136.59 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=82.1
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceE-EEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVT-DVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
++++..++.+|+|.| ||+++|+++|+++|+.||.|. +|+|+.++ +|+++|||||.|.+.++|++|++.||+..
T Consensus 2 ss~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 2 SSGSSGMAASLWMGD-----LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 76 (99)
T ss_dssp CCCCCSSSSEEEECS-----CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE
T ss_pred CCCCCCCccEEEEeC-----CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc
Confidence 567778899999999 999999999999999999999 99999997 79999999999999999999999999999
Q ss_pred cCCce----EEEEEccC
Q psy3345 83 VFSSR----IKVEKCSN 95 (787)
Q Consensus 83 ~~~~~----i~v~~~~~ 95 (787)
|.|+. |.|.+|++
T Consensus 77 ~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 77 LPGATPAKRFKLNYATY 93 (99)
T ss_dssp ESSCSSCEECCEEETTC
T ss_pred cCCCCcceeEEEeecCC
Confidence 99999 99999987
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=7.1e-17 Score=138.83 Aligned_cols=83 Identities=16% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCcccceEEEecCcccCCCc------cCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 8 PVVPRNHISLLDLDEVEFIY------KITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
+...++.|+|.| ||+ ++|+++|+++|+.||.|.+|+|++++ +|+++|||||.|.++++|.+||+.||+
T Consensus 2 ~~~~~~~vfV~n-----Lp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 2 PLGSDQYIVVNG-----APVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp CSCGGGEEEEES-----CCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcCcEEEEeC-----CCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 445577899999 999 99999999999999999999999998 499999999999999999999999999
Q ss_pred CccCC-ceEEEEEccC
Q psy3345 81 TYVFS-SRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~-~~i~v~~~~~ 95 (787)
..|+| |.|.|.+|.+
T Consensus 77 ~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKD 92 (100)
T ss_dssp CBSSSSCBCEEEESHH
T ss_pred cccCCCeEEEEEECch
Confidence 99999 9999999986
No 81
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=134.82 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=78.1
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+..+...|+|.| ||+.+|+++|+++|+.||.|.+|+|+.+++|+++|||||.|.+.++|.+|++.||+..|.|+.
T Consensus 12 ~~~~~~~l~v~n-----lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGN-----LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp CTTGGGEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 344677899999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|+.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999863
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.3e-16 Score=128.90 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=72.9
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
++.-.+.-|.|+| |++.+||++|+++|..||+|.+++|.. ++|||||.|.++++|.+|++.||+..+.||
T Consensus 2 ~~~~~~~wL~VgN-----L~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 2 AMAWGSSWLLLKN-----LTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCCCCCEEEEEC-----CCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCccceEEEeC-----CCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 3444578899999 999999999999999999999999976 589999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|.+
T Consensus 72 ~I~V~~A~e 80 (89)
T 2wbr_A 72 TIFAESPSE 80 (89)
T ss_dssp EEEEECCCH
T ss_pred EEEEEECCH
Confidence 999999864
No 83
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=132.50 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=77.5
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.+......|+|.| ||+++|++||+++|+.| .|.+|+|+.+.+|+++|||||.|.+.++|++||+ ||+..|+||
T Consensus 5 ~~~~~~~~l~v~n-----Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 5 SSGTTCHTVKLRG-----APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCCCCCEEEEEC-----CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CCCCCccEEEEEC-----CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 4455678899999 99999999999999999 8999999999899999999999999999999999 999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|.+
T Consensus 78 ~i~v~~a~~ 86 (91)
T 2dgw_A 78 YIEVFREKS 86 (91)
T ss_dssp EEEEEEESS
T ss_pred EEEEEECCc
Confidence 999999987
No 84
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=137.96 Aligned_cols=87 Identities=22% Similarity=0.457 Sum_probs=80.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|++||.|.+|+|+++. .+|+++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~Ai~~l~-g~~i~g~~l~ 99 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS-ETGRSKGYGFITFSDSECAKKALEQLN-GFELAGRPMK 99 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET-TTTEEEEEEEEEESCHHHHHHHHHHHT-TCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHHHcC-CCEECCEEEE
Confidence 34567899999999999999999999999999999999885 578999999999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.++.+
T Consensus 100 V~~a~~k~d 108 (108)
T 2jrs_A 100 VGHVTERTD 108 (108)
T ss_dssp EECSCSSCC
T ss_pred EEEcccCCC
Confidence 999998753
No 85
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=9.2e-17 Score=145.23 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=75.8
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCc---eEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGT---VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
....+|+|.| |||++|++||+++|+.||. |.+|+|+++++|+++|||||.|.+.++|++||+ +|+..|+||
T Consensus 42 ~~~~~lfVgn-----Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 42 GEGFVVKLRG-----LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CTTCEEEEES-----CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 3567799999 9999999999999999998 899999999999999999999999999999999 899999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|+|..|.+
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999875
No 86
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=2.9e-16 Score=130.20 Aligned_cols=78 Identities=15% Similarity=0.321 Sum_probs=74.5
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
.+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..++|+.|.|.
T Consensus 2 ~~l~V~n-----lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGD-----LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEEC-----CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred eEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4688888 99999999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred EccC
Q psy3345 92 KCSN 95 (787)
Q Consensus 92 ~~~~ 95 (787)
+|++
T Consensus 77 ~a~~ 80 (83)
T 3md1_A 77 WAAK 80 (83)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 9986
No 87
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=1.9e-16 Score=135.28 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=76.9
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
|+..|+|.| ||+.+|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+.|.
T Consensus 1 P~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGS-----IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CCSEEEEES-----CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCcEEEEEC-----CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 577899999 99999999999999999999999999987 699999999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.+|.+
T Consensus 76 V~~a~~ 81 (96)
T 2x1f_A 76 CGYSSN 81 (96)
T ss_dssp EEECSC
T ss_pred EEEcCC
Confidence 999987
No 88
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=134.29 Aligned_cols=85 Identities=27% Similarity=0.487 Sum_probs=78.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+. |+ +..+.|++|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~-~~-~~~~~g~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA-EKQRPRGFGFITFEDEQSVDQAVN-MH-FHDIMGKKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT-TTCSCCSEEEEEESSHHHHHHHHH-HC-CCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCCCceEEEEECCHHHHHHHHH-hC-CCEECCeEEEE
Confidence 4577999999999999999999999999999999999885 679999999999999999999999 86 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
.||.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99997764
No 89
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=2.1e-16 Score=140.06 Aligned_cols=105 Identities=22% Similarity=0.359 Sum_probs=94.4
Q ss_pred CCCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Q psy3345 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQ 656 (787)
Q Consensus 577 ~~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~ 656 (787)
+.+.++|||+|||+.+++++|+++|++||.|.++.++.+. .++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4567899999999999999999999999999999998753 36899999999999999999999999999999
Q ss_pred EEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCC
Q psy3345 657 IELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGE 711 (787)
Q Consensus 657 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~ 711 (787)
|.|.++..... -++++...++++|.++|++||.
T Consensus 77 l~v~~a~~~~~----------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 77 LVVLYYNANRA----------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CEEEECCHHHH----------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEecCChh----------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 99999875444 0578899999999999999993
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=138.10 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEE-EEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
+..+..+|+|.| ||+++|++||+++|+.||.|.+ |+|+++.+|+++|||||.|.++++|++||+. |+..|+||
T Consensus 11 ~~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 11 DTANDGFVRLRG-----LPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SCSCCCEEEEES-----CCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 345678899999 9999999999999999999987 9999998999999999999999999999999 99999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
+|+|..+.+
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 999999876
No 91
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=3.2e-16 Score=132.80 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
+++..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+.+ +|+++|||||.|.+.++|.+|++.||+..|+|
T Consensus 2 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 2 SSGSSGACQIFVRN-----LPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp CCSSSSCCEEEECS-----CCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred CCCCCCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45667788999999 9999999999999999999999999984 89999999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 76 ~~l~v~~a~~ 85 (92)
T 2dgv_A 76 REIDVRIDRN 85 (92)
T ss_dssp BCCCCEECSC
T ss_pred cEEEEEEcCC
Confidence 9999999987
No 92
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=133.29 Aligned_cols=83 Identities=23% Similarity=0.467 Sum_probs=77.4
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|++||.|.+++|+.+. .+|.++|||||+|.+.++|.+|++.|| +..+.|++|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK-DTRKSKGVAFILFLDKDSAQNCTRAIN-NKQLFGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS-SSCCCTTCEEEEESCHHHHHHHHHHTT-TEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCcccEEEEEECCHHHHHHHHHHcC-CCeeCCcEEE
Confidence 34567899999999999999999999999999999999986 578999999999999999999999997 7999999999
Q ss_pred EEEcc
Q psy3345 761 LEWAE 765 (787)
Q Consensus 761 v~~A~ 765 (787)
|+||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 93
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=8.9e-16 Score=136.01 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=78.8
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
...+...|+|.| ||+.+|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|++||+.||+..|+|+
T Consensus 11 ~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 11 DTSNHFHVFVGD-----LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CSTTCEEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 344667799999 99999999999999999999999999987 899999999999999999999999999999999
Q ss_pred eEEEEEccCC
Q psy3345 87 RIKVEKCSNL 96 (787)
Q Consensus 87 ~i~v~~~~~~ 96 (787)
.|.|.+|++.
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999999973
No 94
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=136.51 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=81.4
Q ss_pred CCCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 4 HLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
.+++...+...|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..
T Consensus 4 ~~~~~~~~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGG-----LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp CSSCSCCCCSCEEEES-----CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred CcCCcCCCCCEEEEeC-----CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3455666888999999 99999999999999999999999999986 79999999999999999999999999999
Q ss_pred cCCceEEEEEccC
Q psy3345 83 VFSSRIKVEKCSN 95 (787)
Q Consensus 83 ~~~~~i~v~~~~~ 95 (787)
|+|+.|.|.++++
T Consensus 79 ~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 79 LFGRTIRVNLAKP 91 (102)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCcEEEEEeCCC
Confidence 9999999999987
No 95
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=136.21 Aligned_cols=81 Identities=22% Similarity=0.385 Sum_probs=76.8
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+.|
T Consensus 21 ~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 21 VEGWILFVTG-----VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp TTBEEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3456799999 99999999999999999999999999987 69999999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.+|.+
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9999987
No 96
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=136.48 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=76.4
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
..+...|+|.| ||+++|+++|+++|+.||.|.+|.|+.+++|+++|||||+|.+.++|.+||. +|+..|+||.|
T Consensus 8 ~~~~~~lfV~~-----Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 8 DVKNRSVYIKG-----FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp CSGGGCEEEEC-----CCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred cCCCCEEEEEC-----CCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 34567899999 9999999999999999999999999999899999999999999999999999 79999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998875
No 97
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=135.52 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=80.5
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
......+..+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|
T Consensus 8 ~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 8 PISERNQDATVYVGG-----LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL 82 (105)
T ss_dssp CCCCCCTTTEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC
T ss_pred CcccCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 344555778899999 99999999999999999999999999988 799999999999999999999999999999
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|.+|.+
T Consensus 83 ~g~~l~v~~a~~ 94 (105)
T 1x5u_A 83 YGKPIRVNKASA 94 (105)
T ss_dssp SSCBCEEEETTT
T ss_pred CCeEEEEEECCC
Confidence 999999999987
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-16 Score=133.86 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
..+..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+.+ +|+++|||||.|.+.++|.+|++.||+..|.|
T Consensus 9 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 9 RITRYQVVNLYVKN-----LDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCSSCCCEEEEC-----CCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34455788899999 9999999999999999999999999998 89999999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|++
T Consensus 83 ~~l~V~~a~~ 92 (103)
T 2d9p_A 83 KPLYVALAQR 92 (103)
T ss_dssp SBCEEEECSS
T ss_pred cEEEEEEecc
Confidence 9999999997
No 99
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=133.09 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=78.0
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|++||.|.+++|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ-QSRRSRGFAFVYFENVDDAKEAKERAN-GMELDGRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS-SSSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC-CCCCcccEEEEEECCHHHHHHHHHHhC-CCEECCEEEE
Confidence 34567899999999999999999999999999999999885 578999999999999999999999997 7999999999
Q ss_pred EEEccc
Q psy3345 761 LEWAEE 766 (787)
Q Consensus 761 v~~A~~ 766 (787)
|+||+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999974
No 100
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=135.70 Aligned_cols=87 Identities=25% Similarity=0.476 Sum_probs=80.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|++||.|..|+|+.+. .+|.++|||||+|.+.++|.+|+..|+ +..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR-VTGQHQGYGFVEFLSEEDADYAIKIMD-MIKLYGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS-SSCSBCSCEEEEESSHHHHHHHHHHSS-SCBCSSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCcCCcEEEEEECCHHHHHHHHHHhC-CCeECCeEEE
Confidence 34578999999999999999999999999999999999985 589999999999999999999999997 6999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|.||.++..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987654
No 101
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.5e-16 Score=141.28 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=75.5
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCc---eEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGT---VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.....|+|.| ||+++|++||++||+.||. |.+|+|+++++|+++|||||.|.+.++|.+||+ +|+..|+||
T Consensus 15 ~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 15 GEGYVVKLRG-----LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp CCCCEEEEES-----CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 3456799999 9999999999999999998 899999999999999999999999999999999 899999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|+|..|.+
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999999875
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=135.19 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=72.9
Q ss_pred CCCCCEEEEecCCc-cCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC-CeeecCceE
Q psy3345 682 KQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-STHLYGRRL 759 (787)
Q Consensus 682 ~~~~~~l~V~nLp~-~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~-~~~~~Gr~l 759 (787)
..++++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|+..||+ +..+.||+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 45789999999999 9999999999999999999999876 58999999999999999999973 246999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
+|+||++...
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999996554
No 103
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=135.57 Aligned_cols=89 Identities=73% Similarity=1.177 Sum_probs=80.7
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+++...+|.++|||||+|.+.++|.+|+..|+|+..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34578999999999999999999999999999999999872158999999999999999999999999337999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999997765
No 104
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=5.6e-16 Score=137.27 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=78.0
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+||+.||+..|+|+.|
T Consensus 23 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 23 PEGANLFIYH-----LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp STTCCEEEES-----CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4567899999 99999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred EEEEccCC
Q psy3345 89 KVEKCSNL 96 (787)
Q Consensus 89 ~v~~~~~~ 96 (787)
.|.++++.
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 99999873
No 105
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=135.23 Aligned_cols=86 Identities=23% Similarity=0.443 Sum_probs=79.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V 86 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-ETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIRV 86 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS-SSCCCSSEEEECCSSHHHHHHHHHHHT-TEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecC-CCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCcEEEE
Confidence 3578899999999999999999999999999999999885 678999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.+...
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99997653
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=133.78 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=78.0
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeE--------EEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCC
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKF--------VRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS 751 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~--------v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~ 751 (787)
.+..+.++|||+|||..+|+++|+++|++||.|.. ++|+.+. .+|+++|||||+|.+.++|.+|++.|| +
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-~~g~~~G~afV~f~~~~~a~~Ai~~l~-g 85 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-ETGKLKGEATVSFDDPPSAKAAIDWFD-G 85 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT-TTCSEEEEEEEEBSSHHHHHHHHHHHT-T
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC-CCCCeeeEEEEEECCHHHHHHHHHHhC-C
Confidence 34567899999999999999999999999999999 9999885 689999999999999999999999997 7
Q ss_pred eeecCceEEEEEcc
Q psy3345 752 THLYGRRLVLEWAE 765 (787)
Q Consensus 752 ~~~~Gr~l~v~~A~ 765 (787)
..+.|++|+|+||+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=133.00 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=73.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhc-CCeeecCceE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC-QSTHLYGRRL 759 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~-~~~~~~Gr~l 759 (787)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|..|+..|+ ++..+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 3457899999999999999999999999999999998775 7999999999999999999875 3678999999
Q ss_pred EEEEccccc
Q psy3345 760 VLEWAEEAD 768 (787)
Q Consensus 760 ~v~~A~~~~ 768 (787)
.|+||.++.
T Consensus 84 ~V~~a~~~~ 92 (101)
T 2cq1_A 84 YIQYSNHKE 92 (101)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCccc
Confidence 999998654
No 108
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=134.82 Aligned_cols=86 Identities=27% Similarity=0.511 Sum_probs=79.8
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|..|+|+++. .++.++|||||+|.++++|.+|+..|| +..+.|++|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-ETQRSRGFGFVTFENIDDAKDAMMAMN-GKSVDGRQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS-SSCSCCSEEEEECSSHHHHHHHHHHHT-TCCTTSCCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCcccEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 4567999999999999999999999999999999999985 678999999999999999999999997 69999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.+...
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987654
No 109
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=7.7e-16 Score=133.97 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=77.6
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC---c
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS---S 86 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~---~ 86 (787)
.++..|+|.| ||+++|+++|+++|+.||.|..|.|+.+++|+++|||||.|.+.++|.+||+.||+..+.| +
T Consensus 13 ~~~~~l~v~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGM-----LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 4577899999 9999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|.+
T Consensus 88 ~l~V~~a~~ 96 (105)
T 2dnh_A 88 SLVVKFADT 96 (105)
T ss_dssp CCEEEESCS
T ss_pred cEEEEECcc
Confidence 999999987
No 110
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=134.39 Aligned_cols=85 Identities=20% Similarity=0.403 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEE-EeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFV-RLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v-~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
.+.++|||.|||..+|+++|+++|+.||.|.++ +|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYAFINFASFDASDAAIEAMN-GQYLCNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT-TTCSCCSEEEEEBSSHHHHHHHHHTTT-TCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC-CCCCcCeEEEEEECCHHHHHHHHHHcC-CCEECCEEEEE
Confidence 367899999999999999999999999999999 999885 689999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99987664
No 111
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.8e-17 Score=143.33 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=74.0
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCce----EEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTV----TDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
+..+|+|+| |||++|++||++||+.||.| .+|+|+++++|+++|||||.|.+.++|++||+. |+..|+||
T Consensus 22 ~~~~v~V~n-----Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 22 NQVIVRMRG-----LPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp SCCEEEECS-----CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 456799999 99999999999999999875 699999999999999999999999999999998 99999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
+|+|..|.+
T Consensus 96 ~i~V~~a~~ 104 (123)
T 2dha_A 96 YIELFRSTA 104 (123)
T ss_dssp EECCEEECH
T ss_pred EEEEEECCH
Confidence 999999875
No 112
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=9.3e-17 Score=135.33 Aligned_cols=81 Identities=16% Similarity=0.340 Sum_probs=71.4
Q ss_pred CEEEEecCCccCcHHHHHHHHHhcC--CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 686 SKILVRNIPFQAKQSEVEELFKAFG--ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 686 ~~l~V~nLp~~~t~~dL~~~F~~~G--~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
.+|||+|||..+|+++|+++|+.|| .|.+++|+.+. .+|+++|||||+|.+.++|.+|++.|| +..+.|+.|.|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~-~~g~~kG~afV~f~~~~~a~~Ai~~l~-g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKLMDLLP-KRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT-TTCCEEEEEEECC-CHHHHHHHHHHGG-GSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC-CCCccCcEEEEEECCHHHHHHHHHHcC-CCeeCCEEEEEEE
Confidence 4799999999999999999999999 99999999985 689999999999999999999999997 7999999999999
Q ss_pred ccccc
Q psy3345 764 AEEAD 768 (787)
Q Consensus 764 A~~~~ 768 (787)
|.+..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 98764
No 113
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.7e-16 Score=133.83 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=78.1
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..++..|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 12 ~~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTN-----LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSSSEEEEEES-----CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34677899999 99999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.++++
T Consensus 87 l~v~~a~~ 94 (103)
T 2cq0_A 87 LNVEWAKP 94 (103)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 99999987
No 114
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=135.80 Aligned_cols=86 Identities=24% Similarity=0.473 Sum_probs=79.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...++++|||+|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-RTGYLKGYTLVEYETYKEAQAAMEGLN-GQDLMGQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTSSEEEEEEEEESCHHHHHHHHHHHT-TCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC-CCCceeeEEEEEECCHHHHHHHHHHhc-CCEECCcEEE
Confidence 34567899999999999999999999999999999999885 679999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998654
No 115
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=4.5e-16 Score=137.86 Aligned_cols=86 Identities=16% Similarity=0.371 Sum_probs=79.8
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V 99 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK-QTNLSKCFGFVSYDNPVSAQAAIQSMN-GFQIGMKRLKV 99 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS-SSCSEEEEEEEECSSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCCcCccEEEEECCHHHHHHHHHHcC-CCEECCEEEEE
Confidence 3467899999999999999999999999999999999885 589999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99997764
No 116
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=136.89 Aligned_cols=81 Identities=25% Similarity=0.335 Sum_probs=77.7
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.++..|+|.| ||+++|+++|+++|+.||.|.+|.|+.+++|+++|||||.|.+.++|++|++.||+..|.|+.|.
T Consensus 5 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 5 DHPGKLFIGG-----LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CSCCEEEEEC-----CTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3467899999 99999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.+|++
T Consensus 80 V~~a~~ 85 (116)
T 2fy1_A 80 VEQAKK 85 (116)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999987
No 117
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=5.8e-16 Score=135.99 Aligned_cols=86 Identities=26% Similarity=0.481 Sum_probs=79.7
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR-RTGFSKGYALVEYETHKQALAAKEALN-GAEIMGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT-TTSSBCSEEEEEESSHHHHHHHHHHHT-TCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcceEEEEEECCHHHHHHHHHHcC-CCEECCcEEE
Confidence 34567899999999999999999999999999999998885 689999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998654
No 118
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=135.23 Aligned_cols=86 Identities=27% Similarity=0.532 Sum_probs=79.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK-TTGQSKGFAFISFHRREDAARAIAGVS-GFGYDHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS-SSCSEEEEEEEEESSHHHHHHHHHHTT-TCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC-CCCceeeEEEEEECCHHHHHHHHHHcC-CCeeCCcEEEE
Confidence 4567999999999999999999999999999999999885 589999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99997653
No 119
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=7e-16 Score=136.67 Aligned_cols=87 Identities=24% Similarity=0.508 Sum_probs=80.4
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 88 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM-ATGKSKGYGFVSFFNKWDAENAIQQMG-GQWLGGRQIR 88 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHTT-TCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCEEEE
Confidence 34578999999999999999999999999999999999885 589999999999999999999999997 6999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|.||.++..
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=6.2e-16 Score=134.57 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=78.7
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC---ce
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG---RR 758 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G---r~ 758 (787)
..+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.| ++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~gg~~~~ 88 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALH-GSQTMPGASSS 88 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHS-SCCCCTTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHc-CCccCCCCCcc
Confidence 3568999999999999999999999999999999999984 79999999999999999999999997 688888 99
Q ss_pred EEEEEcccccc
Q psy3345 759 LVLEWAEEADN 769 (787)
Q Consensus 759 l~v~~A~~~~~ 769 (787)
|.|.||.++..
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999997654
No 121
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-16 Score=132.83 Aligned_cols=81 Identities=21% Similarity=0.361 Sum_probs=76.6
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCC--C--CcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTE--G--KFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~--g--~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.++..|+|.| ||+++|+++|+++|+.||.|..|.|+.+++ | +++|||||.|.+.++|.+|++.||+..|+|
T Consensus 3 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 3 SGSSGLFIKN-----LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCCEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4678899999 999999999999999999999999999774 5 899999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 78 ~~l~V~~a~~ 87 (98)
T 2cpf_A 78 HKLEVRISER 87 (98)
T ss_dssp EECEEECSSC
T ss_pred eEEEEEEccC
Confidence 9999999987
No 122
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=135.00 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=72.0
Q ss_pred CCCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc--C
Q psy3345 4 HLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN--T 81 (787)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~--~ 81 (787)
|--|...++.+|+|.| ||+++||+||+++|+.||.|++|.|+.+ +|||||.|.+.++|.+|++.|++ .
T Consensus 8 ~~~~~~~~~~~LfV~n-----Lp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~ 77 (105)
T 1sjq_A 8 HHHGSGVPSRVIHIRK-----LPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTP 77 (105)
T ss_dssp ----CCCCCCEEEECS-----CCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred cccCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 3334455688899999 9999999999999999999999999875 79999999999999999998864 7
Q ss_pred ccCCceEEEEEccC
Q psy3345 82 YVFSSRIKVEKCSN 95 (787)
Q Consensus 82 ~~~~~~i~v~~~~~ 95 (787)
.|.||.|.|.+|++
T Consensus 78 ~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 78 VLRGQPIYIQFSNH 91 (105)
T ss_dssp EETTEECCBCCCSS
T ss_pred eECCEEEEEEEcCC
Confidence 89999999999986
No 123
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=4.9e-16 Score=131.66 Aligned_cols=83 Identities=24% Similarity=0.464 Sum_probs=77.6
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|++||.|.+++|+++ +|.++|||||+|.+.++|.+|+..|+ +..+.|++|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMMN-GMKLSGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHHT-TCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHhC-CCEECCcEEEE
Confidence 457899999999999999999999999999999999875 78999999999999999999999997 69999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
+||++..
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9998765
No 124
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=133.96 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=79.4
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhc-cCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc-cCC
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEE-KGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY-VFS 85 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~-~~~ 85 (787)
+..++.+|+|.| ||+++|+++|+++|+. ||.|.+|+|+.+++|+++|||||.|.+.++|.+|++.||+.. |.|
T Consensus 5 ~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 5 SSGPEYSLFVGD-----LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CSSCCCCEEEEC-----CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCCCcEEEEeC-----CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 345678899999 9999999999999999 999999999999999999999999999999999999999999 999
Q ss_pred ceEEEEEccCC
Q psy3345 86 SRIKVEKCSNL 96 (787)
Q Consensus 86 ~~i~v~~~~~~ 96 (787)
+.|.|.++.+.
T Consensus 80 ~~l~v~~a~~~ 90 (104)
T 2dhg_A 80 KPVRLSVAIPK 90 (104)
T ss_dssp SCCCCCBCCCC
T ss_pred EeEEEEEccCC
Confidence 99999999873
No 125
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=134.12 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=77.7
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..+...|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|.|+.
T Consensus 10 ~~~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDN-----LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CSCCCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCeEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34567899999 99999999999999999999999999987 5999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|++
T Consensus 85 l~V~~a~~ 92 (103)
T 2dnm_A 85 LRVQVARY 92 (103)
T ss_dssp CEEEECSS
T ss_pred EEEEECCc
Confidence 99999987
No 126
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8e-16 Score=135.40 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=78.1
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhc------cC
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFN------NT 81 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~------~~ 81 (787)
..++..|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+||+.|| +.
T Consensus 12 ~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 12 VTEGKTVFIRN-----LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCEEEES-----CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 34677899999 99999999999999999999999999987 68999999999999999999999999 99
Q ss_pred ccCCceEEEEEccCC
Q psy3345 82 YVFSSRIKVEKCSNL 96 (787)
Q Consensus 82 ~~~~~~i~v~~~~~~ 96 (787)
.|+|+.|.|.+|.+.
T Consensus 87 ~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTR 101 (111)
T ss_dssp ESSSCEEEEECCCCC
T ss_pred EEcCEEEEEEECCCC
Confidence 999999999999873
No 127
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=132.08 Aligned_cols=85 Identities=19% Similarity=0.370 Sum_probs=77.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+++. +.++|||||+|.+.++|.+|+..|+ +..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH---TSNDPYCFVEFYEHRDAAAALAAMN-GRKILGKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC---CSSCCEEEEEESSHHHHHHHHHHHT-TEEETTEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC---CCCCCEEEEEECCHHHHHHHHHHhC-CCCcCCCeEE
Confidence 34578999999999999999999999999999999999983 4479999999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999987553
No 128
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=6.3e-16 Score=135.08 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=78.3
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.+..+...|+|.| ||+.+|+++|+++|+.||.|..|+|+.+++|+++|||||.|.+.++|.+|++.||+..|+|+
T Consensus 24 ~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 24 AGVETGGKLLVSN-----LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCCCCSEEEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3445677899999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcc
Q psy3345 87 RIKVEKCS 94 (787)
Q Consensus 87 ~i~v~~~~ 94 (787)
.|.|.+|.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99999985
No 129
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=133.69 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=77.3
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEE-EEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDV-QLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
.++.+|+|.| ||+++|+++|+++|+.||.|.+| +|+.++ +|+++|||||.|.+.++|.+|++.||+..|.|+.
T Consensus 3 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 3 SGSSGIFIGN-----LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp SCCCEEEEEC-----CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3578899999 99999999999999999999999 999985 8999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 78 l~v~~a~~ 85 (96)
T 1x5t_A 78 ITVSYAFK 85 (96)
T ss_dssp CEEEESCC
T ss_pred EEEEEecc
Confidence 99999987
No 130
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=131.81 Aligned_cols=84 Identities=18% Similarity=0.392 Sum_probs=78.1
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
+.+..+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++.+ ++|||||.|.+.++|.+|++.||+..|+|
T Consensus 9 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 9 SESKSTPKRLHVSN-----IPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp SCCSCCCCEEEEES-----CCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455678899999 9999999999999999999999999998755 99999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|.+
T Consensus 83 ~~l~v~~a~~ 92 (103)
T 2cq3_A 83 RKIEVNNATA 92 (103)
T ss_dssp EECEEEECCS
T ss_pred EEEEEEEccc
Confidence 9999999987
No 131
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=134.78 Aligned_cols=85 Identities=24% Similarity=0.413 Sum_probs=79.0
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|..|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V 87 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP-HTKAPRGFAFVRFHDRRDAQDAEAAMD-GAELDGRELRV 87 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS-SSCSBCSCEEEEESSSSHHHHHHHHHS-SCCBTTBCCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCCCCeEEEEEECCHHHHHHHHHHcC-CCEECCcEEEE
Confidence 4567999999999999999999999999999999999885 579999999999999999999999997 69999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
+||.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998654
No 132
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=6.2e-16 Score=134.85 Aligned_cols=87 Identities=21% Similarity=0.418 Sum_probs=79.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeee---cCc
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL---YGR 757 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~---~Gr 757 (787)
...+.++|||.|||..+|+++|+++|++||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+ .|+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~~~~g~ 86 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR-FTGMHKGCAFLTYCERESALKAQSALH-EQKTLPGMNR 86 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS-SSCSCCSEEEEEESSHHHHHHHHHHHT-TTCCCTTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCCCcceEEEEEECCHHHHHHHHHHhc-CCcccCCCCc
Confidence 34577999999999999999999999999999999999986 579999999999999999999999997 5776 889
Q ss_pred eEEEEEcccccc
Q psy3345 758 RLVLEWAEEADN 769 (787)
Q Consensus 758 ~l~v~~A~~~~~ 769 (787)
+|.|.||.++..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 133
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.7e-16 Score=134.87 Aligned_cols=88 Identities=26% Similarity=0.548 Sum_probs=80.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC-----Ceeec
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-----STHLY 755 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~-----~~~~~ 755 (787)
...+.++|||+|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..||. +..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP-DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS-SSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34578899999999999999999999999999999999886 6789999999999999999999999951 59999
Q ss_pred CceEEEEEcccccc
Q psy3345 756 GRRLVLEWAEEADN 769 (787)
Q Consensus 756 Gr~l~v~~A~~~~~ 769 (787)
|++|.|.||.++..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999997764
No 134
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=136.19 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=73.7
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC-CeeecCceE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-STHLYGRRL 759 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~-~~~~~Gr~l 759 (787)
...++++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|++ +..+.|++|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 3457899999999999999999999999999999999876 79999999999999999999863 368999999
Q ss_pred EEEEccccc
Q psy3345 760 VLEWAEEAD 768 (787)
Q Consensus 760 ~v~~A~~~~ 768 (787)
.|+||++++
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999998665
No 135
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=134.26 Aligned_cols=87 Identities=23% Similarity=0.499 Sum_probs=78.7
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
.+..+.++|||.|||..+|+++|+++|+.|| |.+|+|+.+...+|+++|||||+|.+.++|.+|| .|| +..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l 86 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESLGNKRI 86 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-TCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-CCEeCCcEE
Confidence 3445779999999999999999999999999 9999999986223999999999999999999999 897 699999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.++..
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999997764
No 136
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=135.32 Aligned_cols=90 Identities=27% Similarity=0.518 Sum_probs=82.3
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
+.++|||+|||..+|+++|+++|+.||.|.+++|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|+.|.|+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR-ETGKPKGYGFCEYQDQETALSAMRNLN-GREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET-TTTEEEEEEEEECSCHHHHHHHHHHSS-SBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC-CCCccceEEEEEECCHHHHHHHHHHhC-CCeeCCcEEEEEe
Confidence 45789999999999999999999999999999999885 589999999999999999999999997 7999999999999
Q ss_pred ccccccHHHHHH
Q psy3345 764 AEEADNVEDIRK 775 (787)
Q Consensus 764 A~~~~~~~~~~~ 775 (787)
|.+.......+.
T Consensus 85 a~~~~~~~~~~~ 96 (104)
T 1p1t_A 85 AASEKNKEELKS 96 (104)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCccchhhhcc
Confidence 998887655543
No 137
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=132.72 Aligned_cols=86 Identities=27% Similarity=0.481 Sum_probs=78.1
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCC--CCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG--SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~--~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
.+.++|||+|||..+|+++|+++|+.||.|.+|+|+.+... ++.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-GHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-TCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-CCeeCCeEEE
Confidence 46789999999999999999999999999999999988632 44899999999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.+...
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987653
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=130.20 Aligned_cols=84 Identities=19% Similarity=0.435 Sum_probs=75.9
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|||+|||..+|+++|+++|++||.|.+++|+.+....++++|||||+|.+.++|.+|+..|| +..+.|+.|.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-GGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-TCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-CCeECCeEEEEEE
Confidence 468999999999999999999999999999999998852223489999999999999999999997 7999999999999
Q ss_pred ccccc
Q psy3345 764 AEEAD 768 (787)
Q Consensus 764 A~~~~ 768 (787)
|.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98654
No 139
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=130.67 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=75.7
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCC-C-CcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTE-G-KFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~-g-~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+.+.+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++. + +++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 2 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 2 MKPTKVHIGR-----LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCCEEEEEC-----CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 4567899999 999999999999999999999999999873 3 49999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.++.+
T Consensus 77 l~v~~a~~ 84 (88)
T 4a8x_A 77 ITATAVLA 84 (88)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99999986
No 140
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=131.95 Aligned_cols=83 Identities=17% Similarity=0.358 Sum_probs=77.5
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
..|..+...|+|.| ||+++|+++|+++|+.|| |.+|+|+.++ +|+++|||||.|.+.++|.+|| .||+..|+
T Consensus 9 ~~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 9 ELPTEPPYTAYVGN-----LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp CCCSSSCEEEEEES-----CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCCCeEEEEeC-----CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 34556778899999 999999999999999997 9999999988 6999999999999999999999 89999999
Q ss_pred CceEEEEEccC
Q psy3345 85 SSRIKVEKCSN 95 (787)
Q Consensus 85 ~~~i~v~~~~~ 95 (787)
|+.|.|.+|.+
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2dng_A 82 DRSLRVDIAEG 92 (103)
T ss_dssp TEECEEEECCC
T ss_pred CeEEEEEEecC
Confidence 99999999987
No 141
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=130.20 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=75.6
Q ss_pred CCCCCEEEEecCCccCcHHHHH----HHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~----~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
....++|||+|||..+|+++|+ ++|++||.|.+|+|+.+. .+ +|||||+|.+.++|.+|+..|| +..+.|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~--~~--rg~afV~f~~~~~A~~Ai~~l~-g~~~~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT--DY--QLKAVVQMENLQDAIGAVNSLH-RYKIGSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC--ST--TCCEEEEESSHHHHHHHHHHHT-TEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC--CC--CeEEEEEECCHHHHHHHHHHhC-CCEECCe
Confidence 4467899999999999999999 999999999999999884 23 8999999999999999999997 7999999
Q ss_pred eEEEEEcccccc
Q psy3345 758 RLVLEWAEEADN 769 (787)
Q Consensus 758 ~l~v~~A~~~~~ 769 (787)
+|+|+||++...
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999987643
No 142
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-16 Score=134.00 Aligned_cols=85 Identities=20% Similarity=0.392 Sum_probs=79.0
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+ +|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMN-GRIVATKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHT-TCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhC-CCEeCCcEEE
Confidence 3457899999999999999999999999999999999887 78899999999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999997664
No 143
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=3.9e-16 Score=131.35 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=75.9
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
..+..|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|+ .||+..|+|+.|
T Consensus 4 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGN-----VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQI 77 (89)
T ss_dssp HHHTEEEEES-----CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEEC
T ss_pred CcCCEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEE
Confidence 3467899999 99999999999999999999999999987 8999999999999999999999 899999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.++++
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9999986
No 144
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=133.12 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=78.2
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEec-C-CCCcceEEEEEecCHHHHHHHHHHh-ccCccC
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYT-T-EGKFRRFAFIGYHREDQAQAALDYF-NNTYVF 84 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~-~g~~~g~afv~f~~~~~a~~a~~~~-~~~~~~ 84 (787)
+..+..+|+|.| ||+.+|+++|+++|+.||.|..|+|+.+ + +|+++|||||.|.+.++|.+|+..| |+..|.
T Consensus 11 ~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRN-----IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CSSCCCCEEEES-----CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred cCCCCCEEEEeC-----CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 445677899999 9999999999999999999999999998 4 8999999999999999999999999 999999
Q ss_pred CceEEEEEccC
Q psy3345 85 SSRIKVEKCSN 95 (787)
Q Consensus 85 ~~~i~v~~~~~ 95 (787)
|+.|.|.+|++
T Consensus 86 g~~l~v~~a~~ 96 (107)
T 2cph_A 86 GRRLVLEWADS 96 (107)
T ss_dssp SCBCEEEECCC
T ss_pred CCEEEEEeCCC
Confidence 99999999987
No 145
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=137.16 Aligned_cols=83 Identities=13% Similarity=0.264 Sum_probs=79.1
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+..++.+|+|.| ||+.+|+++|+++|+.||.|.+|+|+.+++|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 31 ~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 31 GVETGAKLLVSN-----LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCSSCEEEEEES-----CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 445677899999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999987
No 146
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=131.35 Aligned_cols=86 Identities=29% Similarity=0.462 Sum_probs=78.1
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
....+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+|+..|| +..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE---RGSKGFGFVTFENSADADRAREKLH-GTVVEGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT---TTTCCEEEEEESCHHHHHHHHHHHT-TCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCcEEEEEEECCHHHHHHHHHHhC-CCEECCEEE
Confidence 345578999999999999999999999999999999999883 3489999999999999999999997 799999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.++..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999987653
No 147
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=7e-16 Score=135.46 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=77.4
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 23 ~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 23 SVEGWILFVTS-----IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp BTTBEEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34566799999 99999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 98 l~V~~a~~ 105 (110)
T 1oo0_B 98 IQVDWCFV 105 (110)
T ss_dssp CEEEESEE
T ss_pred EEEEEccc
Confidence 99999987
No 148
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=131.57 Aligned_cols=82 Identities=26% Similarity=0.399 Sum_probs=76.6
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|++||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR--EGKPKSFGFVCFKHPESVSYAIALLN-GIRLYGRPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSTHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCCceEEEEEECCHHHHHHHHHHhC-CCEECCCEEEE
Confidence 4467899999999999999999999999999999999985 58999999999999999999999997 79999999999
Q ss_pred EEccc
Q psy3345 762 EWAEE 766 (787)
Q Consensus 762 ~~A~~ 766 (787)
+||+.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99963
No 149
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-16 Score=134.03 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=76.2
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..+..+|+|.| ||+.+|+++|+++|+.||.|.++.++.++ +|+++|||||.|.+.++|++|++.||+..|+||.
T Consensus 12 ~~~~~~l~v~n-----Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 12 KPGPTIIKVQN-----MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCSSEEEEEES-----CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34567799999 99999999999999999999988888876 7999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.++..
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 99999975
No 150
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=2.4e-16 Score=134.48 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=74.2
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..+..+|+|.| ||+.+|++||+++|+.||.|..+.++.++ +|+++|||||.|.++++|++|++.||+..|+||.
T Consensus 12 ~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 12 KPGPTVIKVQN-----MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp ---CEEEEEEC-----CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 33567899999 99999999999999999999988888876 7899999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.++..
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99998863
No 151
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=139.30 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=78.6
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCc---eEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccC
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGT---VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT 81 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~ 81 (787)
++.+......|+|.| ||+++|++||+++|+.||. |.+|+|+++++|+++|||||.|.+.++|++||+ +|+.
T Consensus 4 ~~~~~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 4 LEEEVDDVFLIRAQG-----LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp CCCCCSSCCEEEEEC-----CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred CcCCCCCccEEEEeC-----CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcc
Confidence 344555677899999 9999999999999999998 899999999999999999999999999999999 8999
Q ss_pred ccCCceEEEEEccC
Q psy3345 82 YVFSSRIKVEKCSN 95 (787)
Q Consensus 82 ~~~~~~i~v~~~~~ 95 (787)
.|+||.|.|..|.+
T Consensus 78 ~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 78 YMGQRYVEVYEINN 91 (107)
T ss_dssp CSSSSCCCCEECCH
T ss_pred eeCCeEEEEEECCH
Confidence 99999999999875
No 152
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.1e-15 Score=128.03 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=74.4
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
....+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++. ++..|+|
T Consensus 6 ~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g 79 (87)
T 3s7r_A 6 KNEEDAGKMFVGG-----LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDG 79 (87)
T ss_dssp -CCSCTTEEEEEC-----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETT
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECC
Confidence 3445678899999 99999999999999999999999999987 699999999999999999999976 8889999
Q ss_pred ceEEEEEc
Q psy3345 86 SRIKVEKC 93 (787)
Q Consensus 86 ~~i~v~~~ 93 (787)
+.|.|..|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 153
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=134.20 Aligned_cols=80 Identities=14% Similarity=0.299 Sum_probs=74.7
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
...++|||+|||+.+|+++|+++|++||.|.+|+|+++. .|+++|||||+|.+.++|.+|+. ++ +..+.|+.|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~--~g~~rG~aFV~F~~~e~a~~Ai~-~~-~~~~~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVE-TP-GQKYKETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC--TTSCCCEEEEEESSHHHHHHHHT-SS-CCCCTTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC--CCCCccEEEEEECCHHHHHHHHH-cC-CCEECCEEEEEE
Confidence 356789999999999999999999999999999999995 49999999999999999999999 75 799999999999
Q ss_pred Eccc
Q psy3345 763 WAEE 766 (787)
Q Consensus 763 ~A~~ 766 (787)
|+.+
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9975
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=132.87 Aligned_cols=86 Identities=17% Similarity=0.329 Sum_probs=79.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCee-EEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce-
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELK-FVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR- 758 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~-~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~- 758 (787)
...+.++|||.|||..+|+++|+++|++||.|. +++|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~~ 82 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR-LTGIPAGYCFVEFADLATAEKCLHKIN-GKPLPGATP 82 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS-SSCCEEEEEEEECSCHHHHHHHHHTTT-TSEESSCSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC-CCCCcCCEEEEEeCCHHHHHHHHHHHc-CCccCCCCc
Confidence 345689999999999999999999999999999 99999885 689999999999999999999999997 79999999
Q ss_pred ---EEEEEccccc
Q psy3345 759 ---LVLEWAEEAD 768 (787)
Q Consensus 759 ---l~v~~A~~~~ 768 (787)
|+|+||.+..
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999998653
No 155
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=6.1e-16 Score=139.40 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=78.0
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
+..++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|++||+.||+..|+|+
T Consensus 42 ~~~~~~~l~V~n-----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 42 NPDPNCCLGVFG-----LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCCSSCBCEET-----CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 345677899999 99999999999999999999999999987 689999999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|.+
T Consensus 117 ~l~V~~a~~ 125 (129)
T 2kxn_B 117 RIRVDFSIT 125 (129)
T ss_dssp CCEESCCSS
T ss_pred EEEEEEecC
Confidence 999999986
No 156
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-16 Score=138.53 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=77.5
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCce-EEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTV-TDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
...+...|+|.| ||+++|++||+++|+.||.| .+|+|+++++|+++|||||.|.+.++|.+||+. |+..|+||
T Consensus 11 ~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 84 (114)
T 2cpy_A 11 VNSAKVCAHITN-----IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGR 84 (114)
T ss_dssp CCSCCCEEEEES-----CCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE
T ss_pred CCCCccEEEEeC-----cCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCe
Confidence 345677899999 99999999999999999999 899999999999999999999999999999998 99999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|.+
T Consensus 85 ~i~v~~a~~ 93 (114)
T 2cpy_A 85 EAFVHVVTL 93 (114)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999999986
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=9.3e-16 Score=132.87 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=78.5
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
.+..+.++|||.|||..+|+++|+++|+.|| |.+|+|+++. .+|+++|||||+|.+.++|.+|+ .|| +..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l 85 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK-DTDKFKGFCYVEFDEVDSLKEAL-TYD-GALLGDRSL 85 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS-SSCSEEEEEEEEESSHHHHHHHG-GGT-TCEETTEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC-CCCccceEEEEEECCHHHHHHHH-hhC-CCeECCeEE
Confidence 3445789999999999999999999999997 9999999985 67999999999999999999999 896 799999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999997654
No 158
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=128.95 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc--cC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY--VF 84 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~--~~ 84 (787)
.+..|+..|+|+| ||+.+|+++|+++|+.||.|++|.|+. +||||||.|.+.++|.+|++.||+.. |+
T Consensus 16 ~~~~ps~~l~V~N-----Lp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 16 HKTPASPVVHIRG-----LIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp -CCCCCSEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred ccCCCCcEEEEeC-----CCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 3445788899999 999999999999999999999999985 37999999999999999999999874 89
Q ss_pred CceEEEEEccC
Q psy3345 85 SSRIKVEKCSN 95 (787)
Q Consensus 85 ~~~i~v~~~~~ 95 (787)
||.|.|.+|+.
T Consensus 86 Gr~i~V~~S~~ 96 (100)
T 3r27_A 86 GHPAFVNYSTS 96 (100)
T ss_dssp TEEEEEEECSC
T ss_pred CcEEEEEeccc
Confidence 99999999986
No 159
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=137.72 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=76.1
Q ss_pred cCCCCCEEEEecCCccCcHHHHH----HHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~----~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G 756 (787)
...+.++|||+|||+.+++++|+ ++|++||.|.+|.+++ +|+++|||||+|.+.++|..|+..|| |..+.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~ln-g~~l~g 99 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAFQ-GYPFQG 99 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHST-TCCCTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHHC-CCEeCC
Confidence 34568899999999999999876 7999999999998854 57899999999999999999999997 799999
Q ss_pred ceEEEEEccccccH
Q psy3345 757 RRLVLEWAEEADNV 770 (787)
Q Consensus 757 r~l~v~~A~~~~~~ 770 (787)
++|+|+||.++...
T Consensus 100 r~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 100 NPLVITFSETPQSQ 113 (127)
T ss_dssp SCCEEEECCCCCHH
T ss_pred CEEEEEEccCcchh
Confidence 99999999987654
No 160
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=132.23 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=77.4
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCC--CCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTE--GKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~--g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
..|..+...|+|.| ||+++|+++|+++|+.|| |.+|.|+.++. |+++|||||.|.+.++|++|| .||+..|
T Consensus 9 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 9 RLPKSPPYTAFLGN-----LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 81 (104)
T ss_dssp CCCSSSCEEEEEES-----CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE
T ss_pred CCCCCCCCEEEEeC-----CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe
Confidence 34555778899999 999999999999999999 99999999884 999999999999999999999 8999999
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|.+|.+
T Consensus 82 ~g~~l~V~~a~~ 93 (104)
T 1wi8_A 82 GNKRIRVDVADQ 93 (104)
T ss_dssp TTEECEEEECCC
T ss_pred CCcEEEEEEccC
Confidence 999999999987
No 161
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=133.16 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCccC------cHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec
Q psy3345 682 KQTGSKILVRNIPFQA------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~------t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~ 755 (787)
....++|||+|||..+ |+++|+++|++||.|.+|+|++ .+|+++|||||+|.+.++|.+|+..|| |..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~---~~g~~~G~afV~f~~~~~A~~Ai~~l~-g~~~~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE---EDGKTKGYIFLEYASPAHAVDAVKNAD-GYKLD 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC---BTTBSCCEEEEEECSSSHHHHHHHHCS-SEECS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC---CCCCeeeEEEEEECCHHHHHHHHHHhC-CcccC
Confidence 3457899999999999 8899999999999999999984 489999999999999999999999997 79999
Q ss_pred Cc-eEEEEEcccccc
Q psy3345 756 GR-RLVLEWAEEADN 769 (787)
Q Consensus 756 Gr-~l~v~~A~~~~~ 769 (787)
|+ +|.|+||...+.
T Consensus 88 g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 88 KQHTFRVNLFTDFDK 102 (105)
T ss_dssp TTCEEEEECSCCCCC
T ss_pred CCceEEEEEcchHhh
Confidence 98 999999986553
No 162
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=134.18 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=78.0
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
..++.+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.+++|+++|||||.|.+.++|.+|++.||+..|.|+.|
T Consensus 12 ~~~~~~l~V~n-----lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVAN-----LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCSCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34567899999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999975
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=135.02 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.+.++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|+..|| +..+.|+.|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 81 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMN-GKSLHGKAIKVE 81 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCS-SCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhC-CCEECCEEEEEE
Confidence 467899999999999999999999999999999999984 89999999999999999999999997 799999999999
Q ss_pred Eccccc
Q psy3345 763 WAEEAD 768 (787)
Q Consensus 763 ~A~~~~ 768 (787)
||++..
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998665
No 164
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=135.07 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
....+..+|+|.| ||+.+|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|++||+.+|+ .|.|
T Consensus 12 ~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 12 QKDTTFTKIFVGG-----LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CCSCSSSEEEEEC-----CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred cCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 3445677899999 99999999999999999999999999987 699999999999999999999999998 8999
Q ss_pred ceEEEEEccCC
Q psy3345 86 SRIKVEKCSNL 96 (787)
Q Consensus 86 ~~i~v~~~~~~ 96 (787)
+.|.|.+|.+.
T Consensus 86 ~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 RKANVNLAYLG 96 (116)
T ss_dssp EECEEEESTTT
T ss_pred EEEEEEEcccC
Confidence 99999999863
No 165
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=134.28 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=73.5
Q ss_pred CCCCCEEEEecCCcc-CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhc-CCeeecCceE
Q psy3345 682 KQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC-QSTHLYGRRL 759 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~-~~~~~~Gr~l 759 (787)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|..|+..|+ ++..+.||+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 457899999999998 999999999999999999999754 7999999999999999999986 2456999999
Q ss_pred EEEEccccccH
Q psy3345 760 VLEWAEEADNV 770 (787)
Q Consensus 760 ~v~~A~~~~~~ 770 (787)
+|+||.++...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999876653
No 166
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.1e-16 Score=134.87 Aligned_cols=87 Identities=25% Similarity=0.419 Sum_probs=78.6
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCC-eeEEEec-cccCCCCCCceEEEEEecCHHHHHHHHHHhcCC-eeecCceE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGE-LKFVRLP-KKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS-THLYGRRL 759 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~-I~~v~i~-~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~-~~~~Gr~l 759 (787)
.+.++|||.|||..+|+++|+++|+.||. |.+++++ .+. .+|.++|||||+|.+.++|..|+..|+++ ..+.|++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA-DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC-TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC-CCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 46789999999999999999999999998 9999998 553 67899999999999999999999999534 89999999
Q ss_pred EEEEccccccH
Q psy3345 760 VLEWAEEADNV 770 (787)
Q Consensus 760 ~v~~A~~~~~~ 770 (787)
.|+||.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999977653
No 167
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=140.67 Aligned_cols=86 Identities=22% Similarity=0.455 Sum_probs=80.1
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|||+|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|+|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR-ETRQSRGYGFVKFQSGSSAQQAIAGLN-GFNILNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET-TTTEEEEEEEEEESSHHHHHHHHHHTT-TEECSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 4467999999999999999999999999999999999885 578999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99997764
No 168
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=130.17 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=75.7
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
..+...|+|.| ||+.+|+++|+++|+.||.|..|+|+.++.+ ++|||||.|.+.++|.+|++.||+..|.|+.|
T Consensus 12 ~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 12 DGQPRTLYVGN-----LSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp SCCCCEEEEES-----CCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeC-----CCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 34567899999 9999999999999999999999999998644 79999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.+|++
T Consensus 86 ~V~~a~~ 92 (103)
T 2cqi_A 86 KVNWATT 92 (103)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999987
No 169
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=3.3e-16 Score=139.11 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceE--EEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVT--DVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
++.+...|+|+| |||++|++||+++|+.|+ |. +|+|+++++|+++|||||.|.++++|++||+. ++..|+|
T Consensus 38 ~~~~~~~lfVgn-----Lp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 38 DSANDGFVRLRG-----LPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp CSSSCCEEEEEC-----CCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 334567899999 999999999999999995 66 99999999999999999999999999999997 8899999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
|.|+|..+.+
T Consensus 111 R~I~V~~a~~ 120 (126)
T 2hgm_A 111 RYIEVFKSSQ 120 (126)
T ss_dssp BCCCCEEECH
T ss_pred EEEEEEECCH
Confidence 9999998875
No 170
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=8.3e-16 Score=143.20 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=75.4
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccC--ceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKG--TVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
.+.+|+|.| ||+++|+++|+++|+.|| .|.+|+|+.++ +|+++|||||.|.+.++|.+||+.||+..|+||.
T Consensus 54 ~~~~lfVgn-----Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGS-----FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp --CEEEEEC-----CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 346899999 999999999999999999 99999999997 7999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 129 l~V~~a~~ 136 (156)
T 3n9u_C 129 VDVRPATR 136 (156)
T ss_dssp CEEEECCH
T ss_pred eEEEEcCC
Confidence 99999986
No 171
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=9.8e-16 Score=133.57 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=79.4
Q ss_pred CCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 5 LSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
...+..+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..+
T Consensus 6 ~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQ-----IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CSCCCTTCEEEEEES-----CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 344556778899999 99999999999999999999999999987 699999999999999999999999999987
Q ss_pred ---CCceEEEEEccC
Q psy3345 84 ---FSSRIKVEKCSN 95 (787)
Q Consensus 84 ---~~~~i~v~~~~~ 95 (787)
.|+.|.|.+|.+
T Consensus 81 ~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 81 LPGMNRPIQVKPADS 95 (106)
T ss_dssp CTTCSSCCEEEECCC
T ss_pred cCCCCceEEEEECCc
Confidence 899999999987
No 172
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=7.3e-16 Score=138.89 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=79.8
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|++||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~Ai~~ln-g~~i~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ-QSRRSRGFAFVYFENVDDAKEAKERAN-GMELDGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS-SSSCCCCEEEEEESCHHHHHHHHHHHT-TCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHhC-CCEECCEEEE
Confidence 34578999999999999999999999999999999999886 678999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 173
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=133.73 Aligned_cols=84 Identities=29% Similarity=0.486 Sum_probs=77.2
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
......++|||+|||..+|+++|+++|++||.|.+|+|+.+ .+.++|||||+|.+.++|.+|+..|| +..+.|++|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~~kg~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN---ERGSKGFGFVTFENSADADRAREKLH-GTVVEGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB---TTBCTTEEEEECCCSHHHHHHHHHHT-TCEETTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC---CCCCceEEEEEECCHHHHHHHHHHcC-CCEECCEEE
Confidence 33457899999999999999999999999999999999988 35589999999999999999999997 799999999
Q ss_pred EEEEcccc
Q psy3345 760 VLEWAEEA 767 (787)
Q Consensus 760 ~v~~A~~~ 767 (787)
.|+||.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999875
No 174
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=3.6e-16 Score=126.81 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=69.8
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|++|++ +|+..|+|+.|.|.+
T Consensus 1 ~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGG-----LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEEC-----CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEec-----CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 467777 99999999999999999999999999988 79999999999999999999998 799999999999987
Q ss_pred c
Q psy3345 93 C 93 (787)
Q Consensus 93 ~ 93 (787)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.4e-16 Score=173.98 Aligned_cols=172 Identities=16% Similarity=0.247 Sum_probs=111.9
Q ss_pred HHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEE--EEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhh-
Q psy3345 596 SIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYG--FVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATT- 672 (787)
Q Consensus 596 ~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~a--fV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~- 672 (787)
.|..+|.++|+|..+..+.........+....|++ |+.|....++..++..++.....++.................
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37899999999987743322110000112223444 778877766655554333322221110000000000000000
Q ss_pred h--hhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q psy3345 673 V--KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750 (787)
Q Consensus 673 ~--~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~ 750 (787)
. ..........+.++|||.|||+.+|+++|+++|+.||.|..|.|+.+. .+|.++|||||+|.+.++|..||..||
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~ln- 165 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK-RSGKPRGYAFIEYEHERDMHSAYKHAD- 165 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC-CCCCccceEEEeeccHHHHHHHHHHcC-
Confidence 0 000011123466899999999999999999999999999999999885 589999999999999999999999997
Q ss_pred CeeecCceEEEEEcccccc
Q psy3345 751 STHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 751 ~~~~~Gr~l~v~~A~~~~~ 769 (787)
+..|.|+.|.|.||.+...
T Consensus 166 g~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 166 GKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCEECCEEEEEEEeCCCCC
Confidence 7999999999999987553
No 176
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=141.58 Aligned_cols=83 Identities=12% Similarity=0.302 Sum_probs=77.1
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcC--CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFG--ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G--~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..++|||+|||+.+|+++|+++|+.|| .|.+|+|+.+. .+|+++|||||+|.+.++|.+||..|| +..+.|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~-~tg~skGfaFV~f~~~~~A~~Ai~~ln-g~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR-ANGQSKGYAEVVVASENSVHKLLELLP-GKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHST-TCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcC-CCEECCeEeEE
Confidence 568999999999999999999999999 99999999885 689999999999999999999999997 79999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
.||.+..
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9998754
No 177
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=2e-15 Score=131.89 Aligned_cols=82 Identities=33% Similarity=0.479 Sum_probs=77.2
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYN-GVPLDGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhC-CCEeCCcEEE
Confidence 34578999999999999999999999999999999999984 89999999999999999999999997 7999999999
Q ss_pred EEEcc
Q psy3345 761 LEWAE 765 (787)
Q Consensus 761 v~~A~ 765 (787)
|+||.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=133.02 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHh-cCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCee-ecCceE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKA-FGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-LYGRRL 759 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~-~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~-~~Gr~l 759 (787)
..+.++|||.|||..+|+++|+++|+. ||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|+ +.. +.|++|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~~g~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQ-GAVGLGSKPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTT-TCCSSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHcc-CCcccCCEeE
Confidence 356789999999999999999999999 9999999999984 89999999999999999999999997 688 999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.++..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999987654
No 179
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=134.00 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=80.0
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCee--------EEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCe
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELK--------FVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST 752 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~--------~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~ 752 (787)
...+.++|||.|||..+|+++|+++|+.||.|. .|+|+.+. .+|.++|||||+|.+.++|.+|+..|| +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK-ETGKPKGDATVSYEDPPTAKAAVEWFD-GK 88 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT-TTCSBCSEEEEEBSSHHHHHHHHHHHT-TC
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC-CCCCeeeEEEEEECCHHHHHHHHHHcC-CC
Confidence 345789999999999999999999999999999 59999885 689999999999999999999999997 79
Q ss_pred eecCceEEEEEcccccc
Q psy3345 753 HLYGRRLVLEWAEEADN 769 (787)
Q Consensus 753 ~~~Gr~l~v~~A~~~~~ 769 (787)
.+.|++|+|+||.++..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999997764
No 180
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=130.35 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC-CeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-STHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~-~~~~~Gr~l~ 760 (787)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|++ +..+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999999999999999999999999998764 79999999999999999999863 3459999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.++..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999986653
No 181
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=127.14 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|||+|||..+|+++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+|+. || +..+.|+.|.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~~-g~~~~gr~i~v 81 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-CN-REYMGGRYIEV 81 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-SC-SEEETTEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-hC-CceeCCcEEEE
Confidence 4567899999999999999999999999 8999999998 589999999999999999999999 96 79999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
.||.++.
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998653
No 182
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=134.05 Aligned_cols=84 Identities=25% Similarity=0.507 Sum_probs=75.1
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|||+|||..+|+++|+++|+.|| |.+|+|+++...+|+++|||||+|.+.++|.+|+ .|+ +..+.|+.|.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-TCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-CCEECCeEEEE
Confidence 45679999999999999999999999999 9999999885347999999999999999999999 896 79999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
+||.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 183
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6e-16 Score=125.51 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=70.8
Q ss_pred EEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEc
Q psy3345 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764 (787)
Q Consensus 687 ~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A 764 (787)
+|||+|||..+|+++|+++|++||.|.+++++.+. .+|+++|||||+|.+.++|.+|++ ++ +..+.|++|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~a~~-~~-~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK-TTNRHRGFGFVTFESEDIVEKVCE-IH-FHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS-SSTTSCBEEEEECSCHHHHHHHHS-SS-CCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHH-CC-CCEECCEEEEEEeC
Confidence 48999999999999999999999999999999885 589999999999999999999998 86 79999999999997
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=129.82 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=71.6
Q ss_pred CCcccceEEEecCcccCCCc-cCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccC--ccC
Q psy3345 8 PVVPRNHISLLDLDEVEFIY-KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT--YVF 84 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~--~~~ 84 (787)
..-|+..|+|.| ||+ .+||+||+++|+.||.|.+|.|+.+ +|||||.|.+.++|..|++.||+. .|.
T Consensus 11 ~~~p~~~l~V~n-----Lp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 11 RVETRRVVHIMD-----FQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCEEEEES-----CCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCEEEEeC-----CCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 344788899999 999 9999999999999999999999875 589999999999999999999964 599
Q ss_pred CceEEEEEccC
Q psy3345 85 SSRIKVEKCSN 95 (787)
Q Consensus 85 ~~~i~v~~~~~ 95 (787)
||.|.|.+|++
T Consensus 81 Gr~l~V~~a~~ 91 (102)
T 1x4d_A 81 GKPVRVHLSQK 91 (102)
T ss_dssp TEECEEEEECC
T ss_pred CcEEEEEECCC
Confidence 99999999986
No 185
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.1e-15 Score=136.19 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=74.8
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|++|
T Consensus 38 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 38 PEGCNLFIYH-----LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCSEEEEEEC-----SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3457799999 99999999999999999999999999987 69999999999999999999999999999999999
Q ss_pred EEEEcc
Q psy3345 89 KVEKCS 94 (787)
Q Consensus 89 ~v~~~~ 94 (787)
.|.+++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999874
No 186
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.2e-15 Score=135.89 Aligned_cols=82 Identities=21% Similarity=0.403 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|++||.|.+++|+++. .+|+++|||||+|.+.++|.+|+..|| +..+.|++|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK-QTSLSKCFGFVSFDNPDSAQVAIKAMN-GFQVGTKRLKV 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS-SSSCCCCEEEEEEESSHHHHHHHHHCC-CCEETTEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCCcCcEEEEEECCHHHHHHHHHHcC-CCEECCEEEEE
Confidence 4567999999999999999999999999999999999885 679999999999999999999999997 79999999999
Q ss_pred EEcc
Q psy3345 762 EWAE 765 (787)
Q Consensus 762 ~~A~ 765 (787)
+||+
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 187
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-16 Score=130.18 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=75.1
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..++..|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 2 ~~~~~~l~v~n-----lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 2 SSGSSGLYIRG-----LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCCCEEEEES-----CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 45678899999 99999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred EEEEEcc
Q psy3345 88 IKVEKCS 94 (787)
Q Consensus 88 i~v~~~~ 94 (787)
|+|.+++
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 9876543
No 188
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=3.6e-15 Score=124.75 Aligned_cols=80 Identities=21% Similarity=0.492 Sum_probs=74.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
..+.++|||+|||+++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999999998899999999999999999999996 688899999999987
Q ss_pred C
Q psy3345 413 G 413 (787)
Q Consensus 413 ~ 413 (787)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=133.04 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=76.6
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
+...|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|.|+.|.
T Consensus 7 ~~~~l~V~n-----lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGN-----IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHSCEEEES-----CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CccEEEEeC-----CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 567899999 99999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.+|.+
T Consensus 82 v~~a~~ 87 (104)
T 1p1t_A 82 VDNAAS 87 (104)
T ss_dssp EEETTC
T ss_pred EEeCCC
Confidence 999986
No 190
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=5e-16 Score=140.92 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=79.0
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeE--EEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCe----e
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKF--VRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST----H 753 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~--v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~----~ 753 (787)
....+.++|||+|||+.+|+++|+++|++||.|.. |+|+++. .+|+++|||||+|.+. +|.+|+..|| +. .
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~-~tg~~rG~aFV~f~~~-~a~~Ai~~l~-g~~~~~~ 94 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK-QTQLNRGFAFIQLSTI-EAAQLLQILQ-ALHPPLT 94 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS-SSSSBCSCEEEECCHH-HHHHHHHHHT-TCCCSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC-CCCCcceEEEEEECCH-HHHHHHHHhc-CCCCCcc
Confidence 33467889999999999999999999999999977 9999985 6899999999999999 9999999997 68 9
Q ss_pred ecCceEEEEEccccc
Q psy3345 754 LYGRRLVLEWAEEAD 768 (787)
Q Consensus 754 ~~Gr~l~v~~A~~~~ 768 (787)
+.||+|.|+||.+..
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998764
No 191
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=133.51 Aligned_cols=87 Identities=24% Similarity=0.431 Sum_probs=79.1
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
....+.++|||.|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+..++ + .+.|++|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~Ai~~~~-~-~~~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR-QTGKSRGYGFVTMADRAAAERACKDPN-P-IIDGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS-SSCCCCSEEEEEESSHHHHHHHHTCSS-C-EETTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC-CCCccceEEEEEECCHHHHHHHHHhCC-C-cCCCEEE
Confidence 344578999999999999999999999999999999999985 579999999999999999999999997 5 8999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.+...
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999976543
No 192
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=132.25 Aligned_cols=85 Identities=25% Similarity=0.379 Sum_probs=78.4
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFN-GQLLFDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHT-TCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhC-CCEeCCCEEE
Confidence 34567899999999999999999999999999999999984 69999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.+..
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99998543
No 193
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=2.1e-15 Score=135.95 Aligned_cols=88 Identities=24% Similarity=0.454 Sum_probs=80.3
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
....+.++|||.|||..+|+++|+++|+.||.|.+|.|+.+. .+|.++|||||+|.+.++|.+|+..|| +..+.|+.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l 94 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-RTGYLKGYTLVEYETYKEAQAAMEGLN-GQDLMGQPI 94 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-TTSSBCSCEEEEESSHHHHHHHHHHHT-TCBSSSSBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHhC-CCeeCCeEE
Confidence 344567899999999999999999999999999999999885 589999999999999999999999997 799999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.++..
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999986553
No 194
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-15 Score=130.70 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=75.3
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|..|+|+.+ +.++|||||+|.+.++|.+|++.|| +..+.|++|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGRD-GYDYDGYRLRV 93 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHcC-CCEECCeEEEE
Confidence 456789999999999999999999999999999999664 5589999999999999999999997 69999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
+||++..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9998754
No 195
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=133.15 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=76.8
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
....+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ ++++|||||.|.+.++|.+|++.||+..|+|+
T Consensus 24 ~~~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 24 ENKSQPKRLHVSN-----IPFRFRDPDLRQMFGQFGKILDVEIIFNE-RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp SCTTCCCEEEEES-----CCTTCCHHHHHHHGGGTCCCSCEEECCBT-TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred cCCCCCCEEEEEC-----CCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445677899999 99999999999999999999999999986 45999999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|++
T Consensus 98 ~l~V~~a~~ 106 (109)
T 2err_A 98 KIEVNNATA 106 (109)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999986
No 196
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=133.40 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=77.8
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHH---HHhhccCceEEEEEEecCC----CCcceEEEEEecCHHHHHHHHHHh
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLK---AKFEEKGTVTDVQLKYTTE----GKFRRFAFIGYHREDQAQAALDYF 78 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~----g~~~g~afv~f~~~~~a~~a~~~~ 78 (787)
....+++++|+|.| ||+++|+++|+ ++|+.||.|.+|.|+.++. ++++|||||+|.+.++|++||+.|
T Consensus 9 ~~r~~~~~~l~V~n-----Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 9 SVRVVQKNLVFVVG-----LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp CCCCCCSSCEEEEE-----ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCEEEEEC-----CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 34566788899999 99999999999 9999999999999998763 356799999999999999999999
Q ss_pred ccCccCCceEEEEEccC
Q psy3345 79 NNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 79 ~~~~~~~~~i~v~~~~~ 95 (787)
|+..|+||.|.|.+|.+
T Consensus 84 ng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTT 100 (111)
T ss_dssp TTEEETTEEEEEESCCC
T ss_pred CCCEECCEEEEEEeccc
Confidence 99999999999999987
No 197
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=131.58 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=76.5
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..+..+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.
T Consensus 13 ~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGG-----LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBS-----CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 45667788888 99999999999999999999999999986 799999999999999999999999 999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 87 l~V~~a~~ 94 (105)
T 2dh8_A 87 IDPKPCTP 94 (105)
T ss_dssp EBCCCSCC
T ss_pred EEEEEccC
Confidence 99999987
No 198
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-16 Score=135.27 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=78.2
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCe-eEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGEL-KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I-~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
..+.++|||+|||+.+|+++|+++|+.||.| .+|+|+.+. +|+++|||||+|.+.++|.+||.. | +..|.|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~-~-~~~~~gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL-H-RKKLNGREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG-C-SEEETTEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-C-CCccCCeEEE
Confidence 4567899999999999999999999999999 899999984 899999999999999999999987 5 7999999999
Q ss_pred EEEccccccH
Q psy3345 761 LEWAEEADNV 770 (787)
Q Consensus 761 v~~A~~~~~~ 770 (787)
|.||.+++..
T Consensus 88 v~~a~~~~~~ 97 (114)
T 2cpy_A 88 VHVVTLEDMR 97 (114)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999876644
No 199
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=5.8e-16 Score=133.22 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=73.1
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC--CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT--EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~--~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
+..+..+|+|.| ||+++|+++|+++|+.|| |.+|+|+.++ +|+++|||||.|.+.++|.+|+ .||+..|+|
T Consensus 15 ~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 15 PKSPPYTAFLGN-----LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp -----CEEEESC-----CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCCCcEEEEeC-----CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 445677899999 999999999999999999 9999999987 7999999999999999999999 899999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|++
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 9999999986
No 200
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=131.31 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=75.2
Q ss_pred CcccceEEEecCcccCCCccC------CHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 9 VVPRNHISLLDLDEVEFIYKI------TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
...+++|+|.| ||+.+ |+++|+++|+.||.|.+|.|+ ..+|+++|||||.|.+.++|.+|+..|||..
T Consensus 12 ~~~~~~l~V~n-----Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 12 DGIDSVIVVDN-----VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CSCCSEEEEES-----CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCCCEEEEeC-----CCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 33467899999 99999 889999999999999999998 4589999999999999999999999999999
Q ss_pred cCCc-eEEEEEccC
Q psy3345 83 VFSS-RIKVEKCSN 95 (787)
Q Consensus 83 ~~~~-~i~v~~~~~ 95 (787)
|+|| .|.|.+|..
T Consensus 86 ~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 86 LDKQHTFRVNLFTD 99 (105)
T ss_dssp CSTTCEEEEECSCC
T ss_pred cCCCceEEEEEcch
Confidence 9999 999999975
No 201
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=4e-15 Score=125.14 Aligned_cols=80 Identities=30% Similarity=0.541 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q psy3345 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415 (787)
Q Consensus 336 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 415 (787)
.++|||+|||+++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999889999999999999999999999 8999999999999999875
Q ss_pred C
Q psy3345 416 K 416 (787)
Q Consensus 416 ~ 416 (787)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 202
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.1e-15 Score=135.97 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=78.6
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
+..+...|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|+
T Consensus 18 ~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTG-----VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCSSSEEEEEES-----CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 344566899999 99999999999999999999999999987 899999999999999999999999999999999
Q ss_pred eEEEEEccCC
Q psy3345 87 RIKVEKCSNL 96 (787)
Q Consensus 87 ~i~v~~~~~~ 96 (787)
.|.|.+|.+.
T Consensus 93 ~l~v~~a~~~ 102 (126)
T 3ex7_B 93 PISVDWCFVR 102 (126)
T ss_dssp BCEEEESEES
T ss_pred EEEEEEecCC
Confidence 9999999873
No 203
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=2.3e-15 Score=131.53 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=75.8
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|+.||.|.+|+|+++. .+|+++|||||+|.+.++|.+|+..+ +..+.|+.|.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~tg~~kg~afV~f~~~~~A~~Ai~~~--~~~l~g~~l~V 98 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-LTKRSRGFGFVTFMDQAGVDKVLAQS--RHELDSKTIDP 98 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT-TTCCCTTCEEEEESSHHHHHHHHHSS--CEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC-CCCCcCcEEEEEECCHHHHHHHHHHC--CCcCCCEEEEE
Confidence 3467899999999999999999999999999999999985 67999999999999999999999986 39999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
.||.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 204
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=131.02 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=76.6
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|||.|||..+|+++|+++|+.||.|..+.++.+. .+|+++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLN-DRPIGSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHTT-TCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC-CCCCeeeEEEEEECCHHHHHHHHHHhC-CCeeCCeEEEE
Confidence 3456899999999999999999999999999888777764 688999999999999999999999997 69999999999
Q ss_pred EEcccc
Q psy3345 762 EWAEEA 767 (787)
Q Consensus 762 ~~A~~~ 767 (787)
+||...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 999754
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=138.01 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=74.8
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEE-ecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLK-YTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~-~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.|..+...|+|.| ||+++|++||+++|+.||.|.++.++ .+.+|+++|||||.|.+.++|.+||+ ||+..|+|
T Consensus 20 ~~~~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 20 SPHEAGFCVYLKG-----LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp SCCCCCCEEEEEC-----CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCCCCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 4555667899999 99999999999999999999884444 45589999999999999999999999 89999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
|+|.|.+|.+
T Consensus 94 r~i~V~~a~~ 103 (124)
T 1wel_A 94 RFIQVHPITK 103 (124)
T ss_dssp SCBEEEEECH
T ss_pred cEEEEEECCH
Confidence 9999999986
No 206
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.1e-15 Score=132.83 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccC-ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKG-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
++....+|+|.| ||+++|++||+++|+.|| .|..|.|+.+ +++|||||.|.+.++|++||+.||+..|+||
T Consensus 24 ~p~~~~~l~Vgn-----Lp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 24 LPAKRYRITMKN-----LPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp -CCCCEEEEEEC-----SSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCEEEEEC-----CCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 555677899999 999999999999999999 8999988643 5899999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|++++.
T Consensus 96 ~i~V~~a~~ 104 (111)
T 2jvr_A 96 VITVERDDN 104 (111)
T ss_dssp EEEEEESCC
T ss_pred EEEEEECCC
Confidence 999999975
No 207
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=132.59 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=76.7
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceE--------EEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVT--------DVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
.+..+|+|.| ||+.+|+++|+++|+.||.|. .|+|+.++ +|+++|||||.|.+.++|.+||+.||+
T Consensus 13 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 13 SDNSAIYVQG-----LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCEEEEEC-----CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEcC-----CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 3567899999 999999999999999999998 79999985 799999999999999999999999999
Q ss_pred CccCCceEEEEEccC
Q psy3345 81 TYVFSSRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~~~i~v~~~~~ 95 (787)
..|.|+.|.|.++++
T Consensus 88 ~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 88 KDFQGSKLKVSLARK 102 (113)
T ss_dssp CEETTEECEEECSSC
T ss_pred CccCCCEEEEEECCC
Confidence 999999999999987
No 208
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=2.7e-16 Score=142.63 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=73.5
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.+...|+|.| |||++||+||+++|+.|| |.+|+|+++++|+++|||||+|.+.++|++|| .+|+..|+||+|+
T Consensus 44 ~~~~~lfV~n-----Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 44 TTGHCVHMRG-----LPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -CCCCEECCS-----CCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 4556799999 999999999999999999 67999999999999999999999999999999 6799999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|..+.+
T Consensus 117 V~~a~~ 122 (139)
T 2hgn_A 117 LFLNST 122 (139)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 999886
No 209
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.3e-15 Score=128.11 Aligned_cols=85 Identities=26% Similarity=0.520 Sum_probs=77.6
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+.. +..+.|++|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL-KTGHSKGFGFVRFTEYETQVKVMSQ---RHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS-SSCSEEEEEEEEESSHHHHHHHHHS---CEEETTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC-CCCCccceEEEEECCHHHHHHHHHc---CCeeCCeEEE
Confidence 34567899999999999999999999999999999999985 5799999999999999999999983 5799999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|.||.++..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999997764
No 210
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.9e-15 Score=127.82 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=75.2
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.+..+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+||+. +..|+|+.|
T Consensus 13 ~~~~~l~v~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l 85 (103)
T 2cqg_A 13 QKTSDLIVLG-----LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWC 85 (103)
T ss_dssp CCCCCEEEES-----CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEE
T ss_pred CCCCEEEEEc-----CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEE
Confidence 4567799999 99999999999999999999999999987 699999999999999999999994 679999999
Q ss_pred EEEEccCCCC
Q psy3345 89 KVEKCSNLGD 98 (787)
Q Consensus 89 ~v~~~~~~~~ 98 (787)
.|.++.+...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987433
No 211
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=132.29 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=79.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|.+|+|+++. .+|.++|||||+|.+.++|.+|+.. + +..+.|+.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~a~~~-~-~~~~~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK-TTNQSRGFGFVKFKDPNCVGTVLAS-R-PHTLDGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS-SSCCEEEEEEEEESSTTHHHHHHHH-C-SEEETTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCCcceEEEEEECCHHHHHHHHHh-C-CCeECCEEEE
Confidence 34577999999999999999999999999999999999985 6899999999999999999999998 6 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.++..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999997764
No 212
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=7e-15 Score=135.06 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=77.5
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..|.|+.
T Consensus 39 ~~~~~~l~V~n-----Lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 39 PDVLRNLMVNY-----IPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp TTTTSEEEEES-----CSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999 99999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|++
T Consensus 114 l~v~~a~~ 121 (139)
T 1u6f_A 114 LKVALAAS 121 (139)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999987
No 213
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.3e-16 Score=138.40 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=79.4
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
+....++|||+|||+.+|+++|+++|+.||.|.++.++.+. .+|+++|||||+|.+.++|.+||. || +..|.|+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~~gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-PNGKATGEGFVEFRNEADYKAALC-RH-KQYMGNRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-TTSSEEEEEEEEBSSSHHHHHHHT-SC-SBCSTTSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-CCCCCCeEEEEEECCHHHHHHHHH-hC-CCeECCcEEE
Confidence 34567999999999999999999999999999885444442 589999999999999999999999 86 7999999999
Q ss_pred EEEccccccHHHHHH
Q psy3345 761 LEWAEEADNVEDIRK 775 (787)
Q Consensus 761 v~~A~~~~~~~~~~~ 775 (787)
|.+|.+++..+.+..
T Consensus 98 V~~a~~~~~~~~~~~ 112 (124)
T 1wel_A 98 VHPITKKGMLEKIDM 112 (124)
T ss_dssp EEEECHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 999998876544443
No 214
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=3e-15 Score=130.82 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=73.5
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.+ +..|+|+.
T Consensus 22 ~~~~~~lfV~n-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 22 GSSGCKMFIGG-----LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp ----CCEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 34567899999 99999999999999999999999999987 6999999999999999999999995 59999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.++.+
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999986
No 215
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=5.2e-15 Score=132.92 Aligned_cols=85 Identities=31% Similarity=0.443 Sum_probs=79.0
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...++++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.|++|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYK-GVPLDGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHT-TEESSSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcC-CCEECCcEEE
Confidence 34567899999999999999999999999999999999984 89999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.+..
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 99998654
No 216
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=124.78 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|++.+| ..++|+.|.|.+
T Consensus 2 ~l~v~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 2 KMFIGG-----LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CEEEES-----CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 578888 99999999999999999999999999987 69999999999999999999999999 999999999998
Q ss_pred c
Q psy3345 93 C 93 (787)
Q Consensus 93 ~ 93 (787)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 7
No 217
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=2.2e-15 Score=128.96 Aligned_cols=84 Identities=20% Similarity=0.419 Sum_probs=76.6
Q ss_pred CCCCCEEEEecCCccCcHHHHH----HHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~----~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
..++++|||+|||..+|+++|+ ++|++||.|.+|++++ +|.++|||||+|.+.++|..|+..|| +..+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSMQ-GFPFYDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHHT-TCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHhC-CCEECCc
Confidence 3578999999999999999999 9999999999999974 46789999999999999999999997 7999999
Q ss_pred eEEEEEccccccH
Q psy3345 758 RLVLEWAEEADNV 770 (787)
Q Consensus 758 ~l~v~~A~~~~~~ 770 (787)
+|.|+||.++...
T Consensus 80 ~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 80 PMRIQYAKTDSDI 92 (97)
T ss_dssp ECEEEECSSCCTH
T ss_pred EEEEEEccCCCcc
Confidence 9999999987754
No 218
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.1e-15 Score=130.33 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCc-eEEEEEE-ecC-CCCcceEEEEEecCHHHHHHHHHHhc--cCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGT-VTDVQLK-YTT-EGKFRRFAFIGYHREDQAQAALDYFN--NTY 82 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~-~g~~~g~afv~f~~~~~a~~a~~~~~--~~~ 82 (787)
.+.+..+|+|.| ||+.+|+++|+++|+.||. |.+|.|+ .++ +|+++|||||.|.+.++|.+|++.|| +..
T Consensus 4 ~s~~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 4 GSSGNCRLFIGG-----IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CCCCSEEEEEEC-----CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred cccCCCEEEEeC-----CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 345678899999 9999999999999999998 9999998 565 58999999999999999999999997 589
Q ss_pred cCCceEEEEEccCC
Q psy3345 83 VFSSRIKVEKCSNL 96 (787)
Q Consensus 83 ~~~~~i~v~~~~~~ 96 (787)
+.|+.|.|.+|++.
T Consensus 79 ~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 79 LWGHQIAVDWAEPE 92 (109)
T ss_dssp BTTBCCEEEESCSS
T ss_pred ecCCeEEEEEcCCC
Confidence 99999999999973
No 219
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=131.71 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCCCCEEEEecCCccCcHHHHH---HHHHhcCCeeEEEeccccCC---CCCCceEEEEEecCHHHHHHHHHHhcCCeeec
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVE---ELFKAFGELKFVRLPKKMVG---SGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~---~~F~~~G~I~~v~i~~~~~~---~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~ 755 (787)
..+.++|||.|||+.+|+++|+ ++|++||.|..|+|+++. . .++++|||||+|.+.++|.+|+..|| +..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~-~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-g~~~~ 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST-SYAGSQGPSASAYVTYIRSEDALRAIQCVN-NVVVD 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS-SCCSSSCCCEEEEEEESSHHHHHHHHHHHT-TEEET
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC-CcCccCCCCeEEEEEECcHHHHHHHHHHhC-CCEEC
Confidence 3467899999999999999999 999999999999998874 3 23667999999999999999999997 79999
Q ss_pred CceEEEEEccccc
Q psy3345 756 GRRLVLEWAEEAD 768 (787)
Q Consensus 756 Gr~l~v~~A~~~~ 768 (787)
|++|.|+||.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999999775
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=130.63 Aligned_cols=100 Identities=17% Similarity=0.319 Sum_probs=83.6
Q ss_pred CeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Q psy3345 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELK 660 (787)
Q Consensus 581 ~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~ 660 (787)
++|||+|||+++++++|+++|++||.|.++.+..+ ++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 47999999999999999999999999999999864 57999999999999999999999999999999999
Q ss_pred ecCccccchhhhhhhccccccCCCCCEEEEecCC
Q psy3345 661 RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694 (787)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp 694 (787)
++....... .............+|||.||+
T Consensus 71 ~a~~~~~~~----~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 71 LSTGMPRRS----RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp ESSSCCCSS----CCCSCCCSCCCCSCCCSCCCC
T ss_pred EccCCCCcc----cCCCCCccccCCCceecCCCC
Confidence 998765411 111111223447789999996
No 221
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=127.75 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=74.5
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
...++.+|+|.| ||+++|+++|+++|+.||.| +|+.+.+|+++|||||.|.+.++|++|++.||+..|.|+.
T Consensus 11 ~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 11 WSGESKTLVLSN-----LSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CSCCCSEEEEES-----CCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 344678899999 99999999999999999976 6777778999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q psy3345 88 IKVEKCSNL 96 (787)
Q Consensus 88 i~v~~~~~~ 96 (787)
|.|.++++.
T Consensus 83 l~v~~a~~~ 91 (101)
T 2fc9_A 83 IRLELQGPR 91 (101)
T ss_dssp EEEEECSSC
T ss_pred EEEEEcCCC
Confidence 999999873
No 222
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=133.36 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=76.3
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|||.|||..+|+++|+++|+.||.|..|+|+.+. .+|.++|||||+|.+.++|.+|+ .|| +..+.|+.|.|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR-NSRRSKGIAYVEFCEIQSVPLAI-GLT-GQRLLGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC-CSSSCCCCEEEEESCGGGHHHHH-HHT-TEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC-CCCccCcEEEEEeCcHHHHHHHH-HcC-CCEeCCeEEEEEe
Confidence 45899999999999999999999999999999999885 57899999999999999999999 997 7999999999999
Q ss_pred ccccc
Q psy3345 764 AEEAD 768 (787)
Q Consensus 764 A~~~~ 768 (787)
|.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 98654
No 223
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.1e-15 Score=129.65 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=74.3
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
..+...|+|.| ||+++|+++|+++|+.||.|.+|.|+. +++++|||||.|.+.++|++||+.||+..|.|+.|
T Consensus 19 ~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 19 GNNDCRIYVGN-----LPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCSSEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34567899999 999999999999999999999999965 46789999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.++++
T Consensus 92 ~V~~a~~ 98 (109)
T 1x4a_A 92 RVEFPRS 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEEccc
Confidence 9999987
No 224
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=3.7e-15 Score=132.02 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=76.7
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.|+.++..|+|.| ||+.+|+++|+++|+.||.|.+|.|+.+ |+++|||||.|.+.++|.+|++.||+..|+|+
T Consensus 3 ~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 3 LPPEVNRILYIRN-----LPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CCTTCCSEEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3566788999999 9999999999999999999999999865 67799999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.++.+
T Consensus 76 ~l~v~~a~~ 84 (115)
T 3lqv_A 76 YLVVLYYNA 84 (115)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEecC
Confidence 999999986
No 225
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=4.2e-15 Score=129.18 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcC-CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G-~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
...++|||+|||+.+|+++|+++|++|| .|..++|+.+ .++|||||+|.+.++|.+|+..|| +..+.|+.|.|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~ln-g~~l~Gr~i~V 99 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERLN-NIEFRGSVITV 99 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHTT-TEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHcC-CCEECCeEEEE
Confidence 3568999999999999999999999999 9999998643 378999999999999999999997 79999999999
Q ss_pred EEcccc
Q psy3345 762 EWAEEA 767 (787)
Q Consensus 762 ~~A~~~ 767 (787)
++|...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 999743
No 226
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.8e-15 Score=123.52 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=73.5
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
+++..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+ +|||||.|.+.++|.+|++.||+..|.|
T Consensus 2 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 2 SSGSSGMVKLFIGN-----LPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp CSCSSCCEEEEEES-----CCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCeEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 45666788999999 99999999999999999999999998 5899999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 70 ~~l~v~~a~~ 79 (90)
T 2dnq_A 70 VNINVEASKN 79 (90)
T ss_dssp CBCEEECSSC
T ss_pred cEEEEEECCC
Confidence 9999999987
No 227
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=129.02 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=76.4
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeE-EEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKF-VRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~-v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
....++|||+|||+.+|+++|+++|+.||.|.. |+|+.+ .+|+++|||||+|.++++|.+||.. + +..+.||.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A~~~-~-~~~~~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALKK-H-KERIGHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHTT-T-TCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC--CCCCcceEEEEEECCHHHHHHHHHh-C-cchhCCcEEE
Confidence 356789999999999999999999999999987 889888 5899999999999999999999997 5 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|.+|.+.+
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99998654
No 228
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=133.22 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=73.9
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHH----HHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLK----AKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
+..|+..|+|.| ||+.+++++|+ ++|+.||.|.+|.+. ++|+++|||||.|.+.++|..|++.|||..|
T Consensus 25 ~~~p~~~LfV~n-----L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 25 HTEPSQVVLITN-----INPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp CCSCCSEEEEES-----CCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 345677899999 99999999976 699999999998775 4689999999999999999999999999999
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
.||.|.|.+|++
T Consensus 98 ~gr~l~V~~a~~ 109 (127)
T 2a3j_A 98 QGNPLVITFSET 109 (127)
T ss_dssp TTSCCEEEECCC
T ss_pred CCCEEEEEEccC
Confidence 999999999986
No 229
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=123.35 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=71.2
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|++||.|.+++++++ +|||||+|.+.++|.+|+..|+++..+.|++|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 456789999999999999999999999999999999875 7999999999999999999983479999999999
Q ss_pred EEcc
Q psy3345 762 EWAE 765 (787)
Q Consensus 762 ~~A~ 765 (787)
+||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 230
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=7.3e-16 Score=129.93 Aligned_cols=81 Identities=30% Similarity=0.472 Sum_probs=72.5
Q ss_pred CEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 686 ~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
++|||+|||..+|+++|+++|++||.|.+++++++. .+|.++|||||+|.+.+ |.+|+..|| +..+.|++|.|+||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~-a~~a~~~l~-g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR-ETKKPKGFGFVEMQEES-VSEAIAKLD-NTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS-SSCCCCEEEEEEECTTH-HHHHHHTSC-SSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC-CCCCcceEEEEEECCHH-HHHHHHHhC-CCEECCeEEEEEEcC
Confidence 579999999999999999999999999999999885 57999999999999999 999999997 799999999999998
Q ss_pred cccc
Q psy3345 766 EADN 769 (787)
Q Consensus 766 ~~~~ 769 (787)
+...
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 231
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=7.2e-16 Score=129.96 Aligned_cols=76 Identities=28% Similarity=0.455 Sum_probs=71.2
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
+|+|.| ||+++|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.+ |.+|+..||+..++|+.|.|.+
T Consensus 3 ~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 3 NIYVGN-----LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEE-----ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred EEEECC-----CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 578888 99999999999999999999999999987 5999999999999999 9999999999999999999999
Q ss_pred ccC
Q psy3345 93 CSN 95 (787)
Q Consensus 93 ~~~ 95 (787)
|.+
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 987
No 232
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=133.39 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=74.2
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
+..|+|.| ||+.+|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|| .||+..|+|+.|.|
T Consensus 25 ~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 25 ARTVFCMQ-----LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HTEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCEEEEeC-----CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 35799999 99999999999999999999999999988 5999999999999999999999 89999999999999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
.+|++
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 99986
No 233
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=2.8e-15 Score=132.98 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCC---eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~---I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~ 758 (787)
....++|||+|||+.+|+++|+++|+.||. |.+|+|+.+. .|+++|||||+|.+.++|.+||. ++ +..+.||.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~--~g~~~G~afV~F~~~~~a~~Al~-~~-g~~~~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR--EGRQSGEAFVELESEDDVKLALK-KD-RESMGHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS--SSCEEEEEEEEBSSHHHHHHHGG-GT-TEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC--CCCCCeEEEEEECCHHHHHHHHh-cC-CCeECCeE
Confidence 456789999999999999999999999999 8999999985 59999999999999999999999 86 79999999
Q ss_pred EEEEEccccc
Q psy3345 759 LVLEWAEEAD 768 (787)
Q Consensus 759 l~v~~A~~~~ 768 (787)
|.|.+|.+++
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999998655
No 234
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-15 Score=125.91 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=73.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec--Cce
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY--GRR 758 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~--Gr~ 758 (787)
...+.++|||.|||..+|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|+..|| +..+. |++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l~-g~~~~~~g~~ 84 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKMR-GFPLGGPDRR 84 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHHT-TCBCSSSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHHC-CCEeCCCCcE
Confidence 3456789999999999999999999999999999999764 6899999999999999999997 69999 999
Q ss_pred EEEEEccccc
Q psy3345 759 LVLEWAEEAD 768 (787)
Q Consensus 759 l~v~~A~~~~ 768 (787)
|.|+||.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999999764
No 235
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.8e-15 Score=136.68 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCC---eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~---I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~ 758 (787)
....++|||+|||+.+|+++|+++|+.||. |.+|+|+++. .|+++|||||+|.+.++|.+||. +| +..+.||.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~--~g~srG~aFV~F~~~e~a~~Al~-~~-g~~l~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR--EGRQSGEAFVELGSEDDVKMALK-KD-RESMGHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS--SSCEEEEEEEECSSHHHHHHHHT-TT-EEESSSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC--CCCCCeEEEEEECCHHHHHHHHh-cC-CCEECCEE
Confidence 446789999999999999999999999999 8999999985 49999999999999999999999 86 79999999
Q ss_pred EEEEEccccc
Q psy3345 759 LVLEWAEEAD 768 (787)
Q Consensus 759 l~v~~A~~~~ 768 (787)
|.|.+|.+++
T Consensus 117 i~V~~a~~~e 126 (136)
T 2hgl_A 117 IEVFKSHRTE 126 (136)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECChHH
Confidence 9999998655
No 236
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.1e-15 Score=130.35 Aligned_cols=84 Identities=19% Similarity=0.446 Sum_probs=77.5
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeee-------
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL------- 754 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~------- 754 (787)
..+.++|||.|||..+|+++|+++|+.||.|.+++|+++. +|.++|||||+|.+.++|.+|+..|| +..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~-g~~~~~~~~~~ 98 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFN-GKFIKTPPGVS 98 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHB-TCCCCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhC-CCEEcCCcccc
Confidence 4567899999999999999999999999999999999984 89999999999999999999999997 6888
Q ss_pred -cCceEEEEEccccc
Q psy3345 755 -YGRRLVLEWAEEAD 768 (787)
Q Consensus 755 -~Gr~l~v~~A~~~~ 768 (787)
.|++|.|.||.|..
T Consensus 99 ~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 99 APTEPLLCKFSGPSS 113 (114)
T ss_dssp CCSSCBEEEECCCSC
T ss_pred CCCCceeEEccCCCC
Confidence 68899999998753
No 237
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.3e-15 Score=128.97 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=71.1
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc--CccCCc
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN--TYVFSS 86 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~--~~~~~~ 86 (787)
..|+..|+|.| ||+++||+||+++|+.||.|.+|.|+.+ +|||||.|.+.++|.+|++.|++ ..|.||
T Consensus 28 ~~ps~~LfVgN-----Lp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 28 GVPSRVIHIRK-----LPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp SSCCSEEEEES-----CCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 34577899999 9999999999999999999999999875 79999999999999999999885 689999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|++
T Consensus 98 ~l~V~~a~~ 106 (119)
T 2ad9_A 98 PIYIQFSNH 106 (119)
T ss_dssp CCEEEECSS
T ss_pred EEEEEEccC
Confidence 999999986
No 238
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=2.1e-15 Score=137.17 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=78.5
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.+..+...|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|++||+.||+..|+|
T Consensus 42 ~~~~~~~~l~V~n-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 42 PDVEGMTSLKVDN-----LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp SSGGGCCCEEEEC-----CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3444566799999 99999999999999999999999999987 79999999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 117 ~~l~V~~a~~ 126 (135)
T 2lea_A 117 RELRVQMARY 126 (135)
T ss_dssp SCCEEEECCC
T ss_pred EEEEEEECCC
Confidence 9999999987
No 239
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=127.24 Aligned_cols=82 Identities=21% Similarity=0.460 Sum_probs=74.6
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|++||.| +++.+ .+|+++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN--QNGKSKGYAFIEFASFEDAKEALNSCN-KREIEGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC--SSSCBCSEEEEECSSHHHHHHHHHHTS-SEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC--CCCCEeeEEEEEECCHHHHHHHHHHhC-CCEeCCeEEE
Confidence 34578999999999999999999999999977 66666 478999999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.+..
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99998764
No 240
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=127.02 Aligned_cols=81 Identities=28% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
.++++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45779999999999999999999999999999999999889999999999999999999999999999999999988765
Q ss_pred C
Q psy3345 414 K 414 (787)
Q Consensus 414 ~ 414 (787)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 241
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=124.55 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=68.2
Q ss_pred CCEEEEecCCccC------cHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc-
Q psy3345 685 GSKILVRNIPFQA------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR- 757 (787)
Q Consensus 685 ~~~l~V~nLp~~~------t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr- 757 (787)
+++|||+|||..+ |+++|+++|++||.|.+++|++ .+|+++|||||+|.+.++|.+|+..|| |..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~---~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE---EDGKTKGYIFLEYASPAHAVDAVKNAD-GYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC---BTTBCCCEEEEEESSHHHHHHHHTTSS-SCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC---CCCcEeEEEEEEECCHHHHHHHHHHhc-CcccCCce
Confidence 4689999999999 7899999999999999999984 389999999999999999999999997 7999999
Q ss_pred eEEEE
Q psy3345 758 RLVLE 762 (787)
Q Consensus 758 ~l~v~ 762 (787)
+|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88763
No 242
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=136.71 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=76.2
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
++..+..+|+|.| ||+.+|+++|+++|+.||.|.+|+|+.++ +|+++|||||.|.+.++|.+|++.||+..|+|
T Consensus 58 ~~~~~~~~l~v~n-----lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 58 GSATTKRVLYVGG-----LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCSSCCEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCCcEEEEEe-----CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3455678899999 99999999999999999999999999986 79999999999999999999999999999999
Q ss_pred ceEEEEEc
Q psy3345 86 SRIKVEKC 93 (787)
Q Consensus 86 ~~i~v~~~ 93 (787)
+.|.|.+|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 243
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.4e-15 Score=129.45 Aligned_cols=82 Identities=11% Similarity=0.246 Sum_probs=77.0
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCcc-----
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV----- 83 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~----- 83 (787)
..+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+.+++|+++|||||.|.+.++|.+|++.||+..|
T Consensus 22 ~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 22 EQDPTNLYISN-----LPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCTTEEEEES-----CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 45677899999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCceEEEEEccC
Q psy3345 84 ---FSSRIKVEKCSN 95 (787)
Q Consensus 84 ---~~~~i~v~~~~~ 95 (787)
.++.|.|.+|.+
T Consensus 97 ~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGP 111 (114)
T ss_dssp SCCCSSCBEEEECCC
T ss_pred ccCCCCceeEEccCC
Confidence 577899999986
No 244
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=131.85 Aligned_cols=83 Identities=23% Similarity=0.393 Sum_probs=77.5
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
+.++|||.|||..+|+++|+++|+.||.|..|+|+.+. .+|.++|||||+|.+.++|.+||.. + +..+.|++|.|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~-~-~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP-ASKRSRGFGFVTFSSMAEVDAAMAA-R-PHSIDGRVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT-TTSSCCSEEEEECSSHHHHHHHHTS-C-SEEETTEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCcCceEEEEeCCHHHHHHHHHh-C-CcEECCEEEEEEE
Confidence 45899999999999999999999999999999999985 6799999999999999999999998 5 7999999999999
Q ss_pred cccccc
Q psy3345 764 AEEADN 769 (787)
Q Consensus 764 A~~~~~ 769 (787)
|.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 997764
No 245
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=134.97 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=76.1
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|++||.|.+++|+++. .+|+++|||||+|.+.++|.+|+..|| +..+.|++|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-ETEKHRGFAFVEFELAEDAAAAIDNMN-ESELFGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT-TTCCCCSEEEEEESCHHHHHHHHHHST-EEEETTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC-CCCCcCcEEEEEECCHHHHHHHHHHhC-CCEECCEEEE
Confidence 34578999999999999999999999999999999999885 689999999999999999999999997 7999999999
Q ss_pred EEEc
Q psy3345 761 LEWA 764 (787)
Q Consensus 761 v~~A 764 (787)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9997
No 246
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.8e-15 Score=124.98 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=70.7
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc--cCccCCc
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN--NTYVFSS 86 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~--~~~~~~~ 86 (787)
..|+..|+|+| ||+.+|++||+++|+.||.|.+|.|+.+ +|||||.|.+.++|.+|++.|+ +..+.||
T Consensus 12 ~~p~~~l~V~n-----Lp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 12 GAPSRVLHIRK-----LPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp SSCCSEEEEES-----CCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 34678899999 9999999999999999999999988864 8999999999999999999875 5689999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|++
T Consensus 82 ~l~V~~a~~ 90 (101)
T 2cq1_A 82 PIYIQYSNH 90 (101)
T ss_dssp ECEEEECSC
T ss_pred EEEEEEcCc
Confidence 999999986
No 247
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=9.9e-15 Score=136.87 Aligned_cols=86 Identities=23% Similarity=0.412 Sum_probs=79.5
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|.+|+|+.+. .++.++|||||+|.+.++|.+||..|| +..+.|+.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V 113 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-MKKTACGFCFVEYYSRADAENAMRYIN-GTRLDDRIIRT 113 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHTT-TSEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 3467999999999999999999999999999999999885 578999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986553
No 248
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.7e-15 Score=131.50 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=75.4
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
+..+|+|.| ||+.+|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+||+. |+..|+|+.|.
T Consensus 26 ~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGG-----LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp HHTEEEEEC-----CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 346799999 99999999999999999999999999987 699999999999999999999999 99999999999
Q ss_pred EEEccCC
Q psy3345 90 VEKCSNL 96 (787)
Q Consensus 90 v~~~~~~ 96 (787)
|.+|.+.
T Consensus 100 V~~a~~~ 106 (116)
T 1x4b_A 100 PKRAVAR 106 (116)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 9999874
No 249
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=3.1e-15 Score=127.50 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 414 (787)
..++|||+|||+++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45799999999999999999999999999999898888889999999999999999999999999999999999999875
No 250
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=124.52 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=67.7
Q ss_pred cceEEEecCcccCCCccC------CHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 12 RNHISLLDLDEVEFIYKI------TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
++.|+|.| ||+.+ |+++|+++|+.||.|.+|.|+ ..+|+++|||||.|.+.++|.+|++.|||..|+|
T Consensus 1 ~~~l~V~n-----Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 1 DSVIVVDN-----VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CCEEEEES-----CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CCEEEEeC-----CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 35788888 99999 789999999999999999988 4589999999999999999999999999999999
Q ss_pred c-eEEE
Q psy3345 86 S-RIKV 90 (787)
Q Consensus 86 ~-~i~v 90 (787)
| .|.|
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 9 8876
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=137.99 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=75.9
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEE--EEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccC----c
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTD--VQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNT----Y 82 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~----~ 82 (787)
.+..+|+|.| ||+++|+++|+++|+.||.|.. |+|++++ +|+++|||||.|.+. +|.+|+..||+. .
T Consensus 21 ~~~~~lfV~n-----L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 21 NANDTIILRN-----LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCEEEECS-----CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 4567899999 9999999999999999999966 9999999 899999999999999 999999999999 9
Q ss_pred cCCceEEEEEccC
Q psy3345 83 VFSSRIKVEKCSN 95 (787)
Q Consensus 83 ~~~~~i~v~~~~~ 95 (787)
|+||.|.|.+|++
T Consensus 95 ~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 95 IDGKTINVEFAKG 107 (131)
T ss_dssp GGGCCCCCEECCC
T ss_pred CCCEEEEEEECCC
Confidence 9999999999987
No 252
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=4.9e-15 Score=133.18 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=74.4
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
...|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.+.++|.+|+ .||+..|+|+.|.|
T Consensus 36 ~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGN-----VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HTEEEEEE-----ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred CCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 45799999 99999999999999999999999999986 8999999999999999999999 79999999999999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
.++++
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99986
No 253
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=131.54 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCC---eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~---I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~ 758 (787)
....++|||+|||+.+|+++|+++|+.||. |.+|+|+.+. .|+++|||||+|.+.++|.+||. ++ +..+.||.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~--~g~~~G~afV~F~~~~~a~~Al~-~~-~~~~~gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR--DGKRRGDALIEMESEQDVQKALE-KH-RMYMGQRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT--TSTTCSEEEEEBSSHHHHHHHHT-TT-TCCSSSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHH-hC-cceeCCeE
Confidence 456789999999999999999999999998 8999999985 49999999999999999999999 86 79999999
Q ss_pred EEEEEccccc
Q psy3345 759 LVLEWAEEAD 768 (787)
Q Consensus 759 l~v~~A~~~~ 768 (787)
|.|.+|.+++
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999998765
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.2e-14 Score=136.28 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=77.5
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.++..|+|.| ||+.+|+++|+++|+.||.|..|+|+.++ +|+++|||||.|.+.++|.+||+.||+..|+|+.|
T Consensus 37 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGN-----LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTCCEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4677899999 99999999999999999999999999988 69999999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.+|++
T Consensus 112 ~V~~a~~ 118 (156)
T 1h2v_Z 112 RTDWDAG 118 (156)
T ss_dssp EEEEESC
T ss_pred EEEECCC
Confidence 9999987
No 255
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7e-15 Score=126.27 Aligned_cols=80 Identities=28% Similarity=0.458 Sum_probs=73.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..|+ +..+.|++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVELD-NMPLRGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHHT-TCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHhC-CCEeCCceEEE
Confidence 456789999999999999999999999999999999865 7899999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987654
No 256
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=122.37 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=72.1
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|++||.|.+++++ +|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLH-HYKLHGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHT-TCBCSSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhc-CCccCCcEEEE
Confidence 4567899999999999999999999999999999996 4799999999999999999997 69999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 257
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=122.33 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=73.0
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.++..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+. +||||.|.+.++|++|++.||+..|+|
T Consensus 3 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 3 SGSSGNTWKIFVGN-----VSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSSCCSCCEEEES-----CCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45667788999999 999999999999999999999999973 499999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 71 ~~l~v~~a~~ 80 (90)
T 2dnp_A 71 KRINVELSTK 80 (90)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEECCC
Confidence 9999999987
No 258
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=5e-15 Score=128.22 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=72.0
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|||..+|+++|+++|+.||.|..|+|++ |||||+|.+.++|.+|+..|| +..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---------~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK---------DYAFIHFDERDGAVKAMEEMN-GKDLEGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS---------SCEEEEESSHHHHHHHHHHHT-TEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---------CEEEEEeCCHHHHHHHHHHHC-CCccCCCEEEE
Confidence 34678999999999999999999999999999999863 589999999999999999997 79999999999
Q ss_pred EEccccccH
Q psy3345 762 EWAEEADNV 770 (787)
Q Consensus 762 ~~A~~~~~~ 770 (787)
+||.+....
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 999976653
No 259
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=7.4e-15 Score=131.98 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=75.5
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|||+|||..+|+++|+++|+.||.|.+|+|+.+. .+|.++|||||+|.+.++|.+|+ .|| +..+.|+.|.|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~-~l~-g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK-FSGHPKGYAYIEFAERNSVDAAV-AMD-ETVFRGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC-TTSSCEEEEEEEESSHHHHHHHH-TTT-TCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcccEEEEEECCHHHHHHHH-hcC-CCeECCeEEEEEE
Confidence 45899999999999999999999999999999999885 58999999999999999999999 786 7999999999999
Q ss_pred cccc
Q psy3345 764 AEEA 767 (787)
Q Consensus 764 A~~~ 767 (787)
|++.
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9854
No 260
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=126.03 Aligned_cols=79 Identities=15% Similarity=0.363 Sum_probs=73.2
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC-----
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG----- 756 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G----- 756 (787)
....++|||.|||+.+|+++|+++|+.||.|..|+|+.+ |||||+|.+.++|.+||..|| +..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~~~~ 82 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLD-NTKFRSHEGET 82 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHSS-SEEEECTTSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHHC-cCCccCCcCcc
Confidence 356799999999999999999999999999999999775 899999999999999999997 799999
Q ss_pred ceEEEEEcccccc
Q psy3345 757 RRLVLEWAEEADN 769 (787)
Q Consensus 757 r~l~v~~A~~~~~ 769 (787)
+.|.|+||.++..
T Consensus 83 ~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 83 AYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEESSCCSC
T ss_pred eEEEEEeCCCCCC
Confidence 9999999997653
No 261
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=124.34 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=74.1
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccC-
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVF- 84 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~- 84 (787)
.+...++.+|+|.| ||+++|+++|+++|+.||.|.+|.|+.+ +|||||.|.+.++|++|++.||+..|.
T Consensus 11 ~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 11 YGKANPTTRLWVGG-----LGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCCCCCSCEEEEC-----CCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 34556778999999 9999999999999999999999998754 789999999999999999999999999
Q ss_pred -CceEEEEEccC
Q psy3345 85 -SSRIKVEKCSN 95 (787)
Q Consensus 85 -~~~i~v~~~~~ 95 (787)
|+.|.|.+|++
T Consensus 81 ~g~~l~V~~a~~ 92 (97)
T 1why_A 81 PDRRLRVDFAKS 92 (97)
T ss_dssp SSCBCEEEECCC
T ss_pred CCcEEEEEECCC
Confidence 99999999987
No 262
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=127.19 Aligned_cols=76 Identities=30% Similarity=0.494 Sum_probs=71.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 416 (787)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 7789999999999999999999999999999999999876
Q ss_pred C
Q psy3345 417 E 417 (787)
Q Consensus 417 ~ 417 (787)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 263
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=1e-15 Score=138.78 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=75.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHH
Q psy3345 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELF 706 (787)
Q Consensus 627 ~G~afV~F~~~e~A~~A~~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F 706 (787)
+|+||.+|.-++.+..++..+... .+|...--.. ............++|||+|||+.+|+++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCC------------CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 367888888887777776655322 2222110000 000111233467899999999999999999999
Q ss_pred HhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccccH
Q psy3345 707 KAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNV 770 (787)
Q Consensus 707 ~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~~~ 770 (787)
+.|| |.+|+|+++. +|+++|||||+|.+.++|.+|| .+| +..+.||.|.|.+|.+.+..
T Consensus 68 ~~~G-i~~v~i~~d~--~g~srGfaFV~F~~~e~A~~Al-~~~-g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 68 SPLN-PVRVHIEIGP--DGRVTGEADVEFATHEEAVAAM-SKD-RANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp CSCC-CSEEECCCSS--SSCSSCCCEEECSHHHHHHHHT-TCC-SCSSSSCCCCCEECCCSCC-
T ss_pred HhcC-CeEEEEEECC--CCCCceEEEEEeCCHHHHHHHH-hhC-CCEECCEEEEEEECCCCCCC
Confidence 9999 7799999995 5999999999999999999999 675 79999999999999987753
No 264
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=127.79 Aligned_cols=79 Identities=23% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|||+|||+.+|++||+++|+.| .|.+|+|+.+. .|+++|||||+|.+.++|.+|| .+| +..+.||.|.|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al-~~~-~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH--VGRNNGNGLVKFLSPQDTFEAL-KRN-RMLMIQRYVEVSP 89 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT--TCCCCSEEEEECSSHHHHHHHH-HTT-TEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC--CCCCCeEEEEEECCHHHHHHHH-hcC-CCeECCeEEEEEE
Confidence 34789999999999999999999999 79999999984 5999999999999999999999 676 7999999999999
Q ss_pred cccc
Q psy3345 764 AEEA 767 (787)
Q Consensus 764 A~~~ 767 (787)
|.++
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 9764
No 265
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.2e-15 Score=127.46 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=70.5
Q ss_pred CCcccceEEE--ecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCcc--
Q psy3345 8 PVVPRNHISL--LDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV-- 83 (787)
Q Consensus 8 ~~~~~~~~~~--~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~-- 83 (787)
...|+.+|+| .| ||+++|+++|+++|+.||.|.+|.|+. .+|||||.|.+.++|++|++.|||..+
T Consensus 21 ~~~pt~~L~V~Ng~-----L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 21 VSYATQSLVVANGG-----LGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSSCCSEEEEETCT-----GGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCCEEEEECCC-----CCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 3446778999 66 999999999999999999999998864 279999999999999999999999988
Q ss_pred ---CCceEEEEEccC
Q psy3345 84 ---FSSRIKVEKCSN 95 (787)
Q Consensus 84 ---~~~~i~v~~~~~ 95 (787)
+|+.|.|.++..
T Consensus 91 ~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 91 DLGQKITLYLNFVEK 105 (114)
T ss_dssp TTSCEEECEEEEESC
T ss_pred ccCCCcEEEEEeccc
Confidence 799999999986
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.1e-15 Score=122.00 Aligned_cols=76 Identities=20% Similarity=0.410 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
++|||+|||+++|+++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999888 9999999999876
No 267
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.4e-15 Score=125.67 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=70.5
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccC--ccCCc
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT--YVFSS 86 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~--~~~~~ 86 (787)
..|+..|+|+| ||+.+||++|+++|+.||.|.+|.|+.+ +|||||.|.+.++|.+|++.||+. .|+||
T Consensus 12 ~~p~~~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 12 VSVSPVVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCSEEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 34678899999 9999999999999999999999998864 799999999999999999998764 59999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.+|++
T Consensus 82 ~l~V~~a~~ 90 (104)
T 1wex_A 82 QAFFNYSTS 90 (104)
T ss_dssp BCEEEECSS
T ss_pred EEEEEEccC
Confidence 999999986
No 268
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=127.00 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=74.3
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
....++|||+|||..+|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|+..|+ +..+.|++|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSVN-GTTIEGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHT-TCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHcC-CCEECCcEEEE
Confidence 346789999999999999999999999999999999876 7899999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
.||+++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99997664
No 269
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=128.74 Aligned_cols=75 Identities=33% Similarity=0.503 Sum_probs=70.0
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|||+|||..+|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..|| +..+.|++|.|+|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-------GGITAIVEFLEPLEARKAFRHLA-YSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-------SSSCEEEEESCHHHHHHHHHHHT-TCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhC-CCEECCeEEEEEE
Confidence 467999999999999999999999999999999875 37899999999999999999997 7999999999999
Q ss_pred ccc
Q psy3345 764 AEE 766 (787)
Q Consensus 764 A~~ 766 (787)
|..
T Consensus 81 a~~ 83 (111)
T 1whx_A 81 API 83 (111)
T ss_dssp EET
T ss_pred CCC
Confidence 974
No 270
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=124.55 Aligned_cols=81 Identities=20% Similarity=0.314 Sum_probs=72.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
.....++|||.|||..+|+++|+++|+.||.|. ++++.+ .++|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-----GPRRRAFLHYPDSAAAQQAVSCLQ-GLRLGTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-----TTTTEEEEECSSHHHHHHHHHHHT-TCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-----CCCcEEEEEECCHHHHHHHHHHhC-CCEECCcEEE
Confidence 345678999999999999999999999999996 666543 578999999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 271
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=126.31 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=71.8
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC---
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS--- 85 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~--- 85 (787)
..+..+|+|.| ||+++|++||+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.||+..|.|
T Consensus 12 ~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 12 RRSENRVVVSG-----LPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CSCCCEEEEES-----CCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34567899999 9999999999999999999999999886 899999999999999999999999999
Q ss_pred --ceEEEEEccC
Q psy3345 86 --SRIKVEKCSN 95 (787)
Q Consensus 86 --~~i~v~~~~~ 95 (787)
+.|.|.+|.+
T Consensus 81 ~~~~i~V~~a~~ 92 (108)
T 1x4c_A 81 ETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEEEEESSC
T ss_pred cceEEEEEeCCC
Confidence 9999999987
No 272
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=124.15 Aligned_cols=83 Identities=16% Similarity=0.295 Sum_probs=75.2
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
..+..++.+|+|.| ||+++|+++|+++|++|+ .|.++.++ +|+++|||||.|.+.++|.+||+.||+..|+
T Consensus 9 ~~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 9 NARSQPSKTLFVKG-----LSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SSSSCCCSSEEEEC-----CCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCCEEEEeC-----CCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34456778899999 999999999999999883 78888886 8999999999999999999999999999999
Q ss_pred CceEEEEEccCC
Q psy3345 85 SSRIKVEKCSNL 96 (787)
Q Consensus 85 ~~~i~v~~~~~~ 96 (787)
|+.|.|.+|++.
T Consensus 81 g~~l~V~~a~~~ 92 (102)
T 2fc8_A 81 GNKVTLDWAKPK 92 (102)
T ss_dssp TEECEEEECCCC
T ss_pred CeEEEEEEecCC
Confidence 999999999973
No 273
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=2.2e-14 Score=122.38 Aligned_cols=78 Identities=18% Similarity=0.513 Sum_probs=71.3
Q ss_pred cCCCCCEEEEecCCc-cCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 681 AKQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~-~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
...+.++|||+|||. .+|+++|+++|+.||.|.++++. +|||||+|.+.++|.+|+..|| +..+.|++|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXES-QEMNFGKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHT-TSEETTEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcC-CCEECCEEE
Confidence 345789999999998 99999999999999999999982 6899999999999999999997 699999999
Q ss_pred EEEEccccc
Q psy3345 760 VLEWAEEAD 768 (787)
Q Consensus 760 ~v~~A~~~~ 768 (787)
.|+||++..
T Consensus 88 ~V~~a~~~~ 96 (97)
T 2xnq_A 88 ILEVSSSNA 96 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999998653
No 274
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.1e-15 Score=122.30 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=69.0
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEE
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 92 (787)
+|+|.| ||+++|+++|+++|+.||.|.+|.|+.++ +|+++|||||.|.++++|.+|++. ++..|+|+.|.|.+
T Consensus 1 ~l~v~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGG-----LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESC-----CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 367777 99999999999999999999999999987 699999999999999999999997 99999999999987
Q ss_pred c
Q psy3345 93 C 93 (787)
Q Consensus 93 ~ 93 (787)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 275
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-15 Score=132.60 Aligned_cols=87 Identities=24% Similarity=0.406 Sum_probs=74.2
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||.|||..+|+++|+++|+.||.|..+.+..+. .+|.++|||||+|.+.++|.+|+..|+ +..+.|++|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-MTGRMRGQAFITFPNKEIAWQALHLVN-GYKLYGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-ECSSSCSEEEEECSSHHHHHHHHHHST-TCBCSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-CCCccceEEEEEECCHHHHHHHHHHhC-CCEeCCcEEE
Confidence 34578999999999999999999999999999443332221 267899999999999999999999997 6999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.+...
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999987653
No 276
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=121.26 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=72.5
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
..+..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+. +||||.|.+.++|.+|++.||+..|.|
T Consensus 4 ~~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 4 GSSGKASTKLHVGN-----ISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp SCCCCSSEEEEEES-----CCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 44556778899999 999999999999999999999999974 499999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 72 ~~l~V~~a~~ 81 (92)
T 2dgt_A 72 KRMHVQLSTS 81 (92)
T ss_dssp EEEEEEESSC
T ss_pred cEEEEEEccC
Confidence 9999999987
No 277
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=131.67 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCe----eEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGEL----KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I----~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~ 758 (787)
...++|||+|||+.+|++||+++|+.||.| .+|+|+.+ .+|+++|||||+|.+.++|.+||.. + +..+.||.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d--~~gr~~G~aFV~F~~~~~A~~Al~~-~-~~~l~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY--PDGRPTGDAFVLFACEEYAQNALRK-H-KDLLGKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC--TTSCEEEEEEECCSSHHHHHHHHTT-T-TEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC--CCCCEeeEEEEEECCHHHHHHHHHh-C-CCeeCCeE
Confidence 457899999999999999999999999975 68999988 4899999999999999999999996 5 79999999
Q ss_pred EEEEEcccccc
Q psy3345 759 LVLEWAEEADN 769 (787)
Q Consensus 759 l~v~~A~~~~~ 769 (787)
|.|..|.+++-
T Consensus 97 i~V~~a~~~e~ 107 (123)
T 2dha_A 97 IELFRSTAAEV 107 (123)
T ss_dssp ECCEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999986553
No 278
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.7e-15 Score=126.24 Aligned_cols=77 Identities=25% Similarity=0.415 Sum_probs=71.6
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
...++|||+|||..+|+++|+++|+.||.|.++++++ ++|||||+|.+.++|.+|+..|| +..+.|++|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-------EKGCCFIKYDTHEQAAVCIVALA-NFPFQGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHT-TCEETTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-------CCCEEEEEECCHHHHHHHHHHhC-CCeECCeEEEEE
Confidence 4578999999999999999999999999999999974 47999999999999999999997 799999999999
Q ss_pred Ecccc
Q psy3345 763 WAEEA 767 (787)
Q Consensus 763 ~A~~~ 767 (787)
||+++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 99864
No 279
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=126.27 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=74.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEee
Q psy3345 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412 (787)
Q Consensus 333 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 412 (787)
....++|||+|||+++|+++|+++|++||. ..|.|+.++ +|+++|||||+|.+.++|.+|++ +|+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345679999999999999999999999995 599999997 89999999999999999999995 899999999999999
Q ss_pred CCCC
Q psy3345 413 GKPK 416 (787)
Q Consensus 413 ~~~~ 416 (787)
+.+.
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8765
No 280
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=120.60 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.1
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|++||.|.++++++ +||||+|.+.++|.+|+..|| +..+.|+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------DYAFVHMERAEDAVEAIRGLD-NTEFQGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---------SEEEEEESCHHHHHHHHHHHT-TEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---------CEEEEEECCHHHHHHHHHHhC-CCeeCCcEEE
Confidence 345679999999999999999999999999999999964 399999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.++..
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999987653
No 281
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.1e-14 Score=123.76 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=73.4
Q ss_pred CCCCEEEEecCCc-----cCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 683 QTGSKILVRNIPF-----QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 683 ~~~~~l~V~nLp~-----~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
.++++|+|+||.. .-++++|+++|++||.|.+|+|+++...+++++|||||+|.++++|.+|+..|| |+.+.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-G~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-GRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-TCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-CCEECCc
Confidence 4688999999963 237899999999999999999998753347899999999999999999999997 7999999
Q ss_pred eEEEEEccc
Q psy3345 758 RLVLEWAEE 766 (787)
Q Consensus 758 ~l~v~~A~~ 766 (787)
.|.|+||.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999975
No 282
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=6.2e-15 Score=127.43 Aligned_cols=82 Identities=11% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
.+..++.+|+|.| ||+++|+++|+++|+.||.|.+|.|+.+++|+++|||||.|.+.++|++|++ |+..|+|+
T Consensus 4 ~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 4 EGKIMPNTVFVGG-----IDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp CCEEEEEEEEEEC-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 3445678899999 9999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|..+.+
T Consensus 77 ~l~v~~a~~ 85 (102)
T 2xs2_A 77 KLKLGPAIR 85 (102)
T ss_dssp ECEEEEEEE
T ss_pred EEEEEECCc
Confidence 999999986
No 283
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.9e-14 Score=127.40 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=70.5
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceE-EEEEecCHHHHHHHHHHhcCCeeecC--ceEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF-GFVEFITKNEAKRAMKALCQSTHLYG--RRLV 760 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~-afV~F~~~~~A~~Al~~l~~~~~~~G--r~l~ 760 (787)
+-..|||.||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|.+|++.|| |..++| +.|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~Ln-G~~i~g~~~~Lr 99 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSLD-GQNIYNACCTLR 99 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHHT-TCEEETTEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHcC-CCeecCCCcEEE
Confidence 3456779999999999999999999999999999775 3687 9999999999999999997 799998 9999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||++.+
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99999764
No 284
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=1.7e-14 Score=136.47 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=76.4
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.+...|+|.| ||+.+|+++|+++|+.||.|..|.|+.++ +|+++|||||.|.+.++|.+||+.||+..|.|+.|
T Consensus 70 ~~~~~l~V~n-----Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTS-----IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3456799999 99999999999999999999999999986 89999999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.+|.+
T Consensus 145 ~V~~a~~ 151 (165)
T 1rk8_A 145 QVDWCFV 151 (165)
T ss_dssp EEEESEE
T ss_pred EEEEecC
Confidence 9999987
No 285
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=120.16 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=70.6
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHh-ccCccCCce
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYF-NNTYVFSSR 87 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~-~~~~~~~~~ 87 (787)
..+..+|+|.| ||+++|+++|+++|+.||.|.+|.|+.+ +|||||.|.+.++|.+|++.| |+..++|+.
T Consensus 9 ~~~~~~l~V~~-----l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 9 DKTITTLYVGG-----LGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CSSCCCEEEEC-----CTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCccEEEEcC-----CCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 34667899999 9999999999999999999999999974 799999999999999999999 999999999
Q ss_pred EEEEEcc
Q psy3345 88 IKVEKCS 94 (787)
Q Consensus 88 i~v~~~~ 94 (787)
|.|.+|+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999885
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=2.2e-15 Score=130.00 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.+.++|||+|||..+|+++|+++|+.||.|.. .++.+. .+|+++|||||+|.+.++|.+|++ || +..+.|+.|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-~~g~~~g~afV~f~~~~~a~~A~~-l~-g~~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-RTGTNRKFGYVDFESAEDLEKALE-LT-GLKVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-EEETTTTEEEEEESSHHHHHHHHH-GG-GCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-CCCCcCcEEEEEECCHHHHHHHHh-cC-CcEECCcEEEEE
Confidence 36789999999999999999999999999988 565554 578999999999999999999998 97 799999999999
Q ss_pred Ecccccc
Q psy3345 763 WAEEADN 769 (787)
Q Consensus 763 ~A~~~~~ 769 (787)
||.++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987653
No 287
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=5.5e-15 Score=126.47 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=74.5
Q ss_pred cccceEEEecCcccCCCccCCHHHHH----HHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLK----AKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.++..|+|.| ||+++|+++|+ ++|+.||.|.+|.|+. +|+++|||||.|.+.++|.+|++.||+..|.|
T Consensus 6 ~~~~~l~V~n-----Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 6 RPNHTIYINN-----LNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp CCCSEEEEES-----CCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4678899999 99999999999 9999999999999874 58899999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|++
T Consensus 79 ~~l~v~~a~~ 88 (97)
T 1nu4_A 79 KPMRIQYAKT 88 (97)
T ss_dssp EECEEEECSS
T ss_pred cEEEEEEccC
Confidence 9999999987
No 288
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=124.91 Aligned_cols=85 Identities=24% Similarity=0.478 Sum_probs=75.1
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
....+.++|||.|||..+|+++|+++|+.|+ .++++.+. .+|.++|||||+|.+.++|.+||..|| +..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l 84 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR-ETGSSKGFGFVDFNSEEDAKAAKEAME-DGEIDGNKV 84 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS-SSCSEEEEEEEECSSHHHHHHHHHHHT-TCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhC-CCeECCeEE
Confidence 3456789999999999999999999999875 56666664 578999999999999999999999997 699999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||+++..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999998764
No 289
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=124.53 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=70.7
Q ss_pred ccCCCCCEEEE--ecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeee---
Q psy3345 680 VAKQTGSKILV--RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL--- 754 (787)
Q Consensus 680 ~~~~~~~~l~V--~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~--- 754 (787)
....+.++||| .|||..+|+++|+++|++||.|.+|.|+.+ ||||||+|.+.++|.+|+..|| |..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~ln-G~~~~~~ 91 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTLN-GKEVVDD 91 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHTT-TCEEECT
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhC-CCEEccc
Confidence 33457889999 559999999999999999999999998653 7999999999999999999997 6877
Q ss_pred --cCceEEEEEcccc
Q psy3345 755 --YGRRLVLEWAEEA 767 (787)
Q Consensus 755 --~Gr~l~v~~A~~~ 767 (787)
.|++|.|.||+..
T Consensus 92 lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 92 LGQKITLYLNFVEKV 106 (114)
T ss_dssp TSCEEECEEEEESCC
T ss_pred cCCCcEEEEEecccC
Confidence 6899999999743
No 290
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-15 Score=130.62 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=74.3
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
..+..++..|+|.| ||+++|+++|+++|+.||.|..|.+..+. +|+++|||||.|.+.++|.+|++.||+..|+
T Consensus 19 ~~~~~~~~~l~V~n-----Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 19 YNPGEPNKVLYLKN-----LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp CCCCSCCSEEEEEC-----CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred cCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34455778999999 99999999999999999998544333222 7899999999999999999999999999999
Q ss_pred CceEEEEEccC
Q psy3345 85 SSRIKVEKCSN 95 (787)
Q Consensus 85 ~~~i~v~~~~~ 95 (787)
|+.|.|.+|++
T Consensus 94 g~~l~v~~a~~ 104 (115)
T 2cpx_A 94 GKILVIEFGKN 104 (115)
T ss_dssp SCBCEEEECCC
T ss_pred CcEEEEEEccC
Confidence 99999999987
No 291
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=120.04 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=71.5
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|++||.|.++++++ +||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---------~~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---------DYAFVHMEKEADAKAAIAQLN-GKEVKGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---------SCEEEEESCHHHHHHHHHHHT-TCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---------CEEEEEECCHHHHHHHHHHhC-CCEECCcEEE
Confidence 345678999999999999999999999999999999964 389999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.+..
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 292
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.1e-15 Score=127.13 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=70.2
Q ss_pred CcccceEEEecCcccCCCcc-CCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc--CccCC
Q psy3345 9 VVPRNHISLLDLDEVEFIYK-ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN--TYVFS 85 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~--~~~~~ 85 (787)
..|+..|+|+| ||++ +|++||+++|+.||.|.+|.|+. ++|||||.|.+.++|.+|++.||+ ..|+|
T Consensus 22 ~~p~~~l~V~N-----Lp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSN-----LPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEES-----CCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeC-----CCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34678899999 9998 99999999999999999999974 489999999999999999999874 56999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
|.|.|.+|..
T Consensus 92 r~l~V~~a~~ 101 (112)
T 1x4f_A 92 RCVKVDLSEK 101 (112)
T ss_dssp SCCEEEEECS
T ss_pred EEEEEEECcc
Confidence 9999999986
No 293
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=4.3e-14 Score=122.27 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=70.6
Q ss_pred CcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
..+..+|+|.| ||+++|+++|+++|+.||.|.+|+|+ +|||||.|.+.++|.+|++.||+..|.|+.|
T Consensus 8 ~~~~~~l~V~n-----l~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 8 MAKVKVLFVRN-----LANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCEEEEC-----CCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 34567899999 99999999999999999999999987 4699999999999999999999999999999
Q ss_pred EEEEccCC
Q psy3345 89 KVEKCSNL 96 (787)
Q Consensus 89 ~v~~~~~~ 96 (787)
.|.++++.
T Consensus 76 ~v~~a~~~ 83 (103)
T 2dgu_A 76 EIVFAKPP 83 (103)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99999873
No 294
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.2e-14 Score=125.51 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=71.1
Q ss_pred ceEEEecCcccCC----CccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecC----HHH----HHHHHH--H
Q psy3345 13 NHISLLDLDEVEF----IYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHR----EDQ----AQAALD--Y 77 (787)
Q Consensus 13 ~~~~~~~l~~~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~----~~~----a~~a~~--~ 77 (787)
..|+|.| | ||++||++|+++|+.||+|.+|.++.|+ +|+++|||||.|.+ +++ |.+|+. .
T Consensus 3 ~kI~Vgn-----L~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 3 CEIVVYP-----AQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp CEEEEEE-----SSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred cEEEEeC-----CCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 6799999 9 9999999999999999999999999999 89999999999996 544 899999 7
Q ss_pred hccCccCCceEEEEEccC
Q psy3345 78 FNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 78 ~~~~~~~~~~i~v~~~~~ 95 (787)
+|+..|+||.|.|.+-+.
T Consensus 78 lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 78 SSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TTCEEETTEEEEEEECCT
T ss_pred hcCCeecCcEEEEEECcc
Confidence 899999999999998764
No 295
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=117.16 Aligned_cols=74 Identities=19% Similarity=0.413 Sum_probs=65.4
Q ss_pred CCCE-EEEecCCccCcHHH----HHHHHHhc-CCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 684 TGSK-ILVRNIPFQAKQSE----VEELFKAF-GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 684 ~~~~-l~V~nLp~~~t~~d----L~~~F~~~-G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
|..+ |||.|||+.+++++ |+++|++| |.|.+| +| |+|||.|.+.++|.+|++.|+ |..++||
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~-G~~l~gr 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRME-NEDVFGN 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHHT-TCCSSSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHhc-CCccCCc
Confidence 3444 99999999999887 66899999 599777 23 999999999999999999997 7999999
Q ss_pred eEEEEEcccccc
Q psy3345 758 RLVLEWAEEADN 769 (787)
Q Consensus 758 ~l~v~~A~~~~~ 769 (787)
+|+|+||+.+.+
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999997765
No 296
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.2e-14 Score=138.48 Aligned_cols=83 Identities=13% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+..++..|+|.| ||+.+|+++|+++|+.||.|..|.|+.+++|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 84 ~~~~~~~l~V~n-----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 84 GVETGAKLLVSN-----LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp SCTTCEEEEEEC-----CCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCCCEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 445678899999 999999999999999999999999999989999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 159 l~V~~a~~ 166 (177)
T 2f3j_A 159 MDIQLVAS 166 (177)
T ss_dssp CEEEEESS
T ss_pred EEEEEecC
Confidence 99999986
No 297
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=125.26 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=72.5
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.+...|+|.| ||+.+|+++|+++|+.||.|.+|.|+.+ +|||||.|.+.++|.+|++.||+..|+|+.|.
T Consensus 23 ~~~~~l~V~n-----l~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 23 PKNCTVYCGG-----IASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp SSCCEEEEEC-----CSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3567899999 9999999999999999999999999986 79999999999999999999999999999999
Q ss_pred EEEccCC
Q psy3345 90 VEKCSNL 96 (787)
Q Consensus 90 v~~~~~~ 96 (787)
|.+|++.
T Consensus 93 v~~a~~~ 99 (109)
T 1x4g_A 93 CYWGKES 99 (109)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999973
No 298
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=123.36 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=72.3
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
...++..|+|.| ||+.+|+++|+++|+.||.|..+ ..+|+++|||||.|.+.++|.+|++.||+..|+|+.
T Consensus 12 ~~~~~~~l~V~n-----L~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 12 KVRAARTLLAKN-----LSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTGGGEEEEES-----CCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cCCCCCEEEEeC-----CCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 344678899999 99999999999999999987666 457999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 83 l~v~~a~~ 90 (96)
T 1fjc_A 83 VSLYYTGE 90 (96)
T ss_dssp EEEEECSS
T ss_pred EEEEEcCC
Confidence 99999987
No 299
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=1.5e-14 Score=125.98 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
..+..++.+|+|.| ||+++|+++|+++|+.||.|.+|.|+ +|||||.|.+.++|.+|++.||+..|+|
T Consensus 25 ~~~~~~~~~l~V~n-----Lp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 25 QEGELSNTRLFVRP-----FPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp ---CCSCSEEEECS-----SCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred cCCCCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34556778899999 99999999999999999999999998 6999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 93 ~~l~V~~a~~ 102 (108)
T 2jvo_A 93 QPLEVVYSKL 102 (108)
T ss_dssp EECEEESCSC
T ss_pred eEEEEEEecC
Confidence 9999999986
No 300
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=132.91 Aligned_cols=89 Identities=18% Similarity=0.384 Sum_probs=75.0
Q ss_pred ccCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEE--Eecccc--CCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec
Q psy3345 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFV--RLPKKM--VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755 (787)
Q Consensus 680 ~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v--~i~~~~--~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~ 755 (787)
....+.++|||+|||+.+|+++|+++|+.||.|.++ +++.+. ..+|+++|||||+|.+.++|.+|+..|| +..+.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-g~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-GYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-TBEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-CCEeC
Confidence 445678999999999999999999999999998774 111110 0268899999999999999999999997 79999
Q ss_pred CceEEEEEcccccc
Q psy3345 756 GRRLVLEWAEEADN 769 (787)
Q Consensus 756 Gr~l~v~~A~~~~~ 769 (787)
|++|.|+||++...
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999986544
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=2.7e-14 Score=121.79 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=70.8
Q ss_pred CCCcccceEEEecCcccCCCc-cCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIY-KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.+..++.+|+|.| ||+ ++|+++|+++|+.||.|.+|.|. +|||||.|.+.++|.+|++.||+..++|
T Consensus 17 ~~~~~~~~l~V~n-----Lp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 17 RGSHMKSRLFIGN-----LPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp --CCTTCEEEEES-----CCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCCCEEEEeC-----CCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3455688899999 999 99999999999999999999983 7999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.++++
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9999999986
No 302
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=122.01 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEE-eccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVR-LPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~-i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
....++|||+|||+.+|+++|+++|+.||.|.+++ |+.+. ..|.|||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-----~~~~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-----ETAVVNVTYSSKDQARQALDKLN-GFQLENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-----SSEEEEEEESSHHHHHHHHHHHT-TCBCSSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-----CCCEEEEEECCHHHHHHHHHHhC-CCEECCcEEE
Confidence 34578999999999999999999999999999995 77763 23449999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.+++.
T Consensus 86 V~~a~~~~~ 94 (96)
T 2e44_A 86 VAYIPDEMA 94 (96)
T ss_dssp EEECCCCCS
T ss_pred EEEcCcccc
Confidence 999998853
No 303
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=122.86 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=70.6
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
.+.+|+|.| ||+.+|+++|+++|+.||.|. +.++.+ +++|||||.|.+.++|++|++.||+..|+|+.|.|
T Consensus 18 ~~~~l~V~n-----L~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 18 LAADVYVGN-----LPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp CCCEEEEEC-----CCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCEEEEeC-----CCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 367899999 999999999999999999987 777753 78999999999999999999999999999999999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
.+|++
T Consensus 89 ~~a~~ 93 (97)
T 2e5j_A 89 ALARQ 93 (97)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99987
No 304
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.5e-14 Score=120.64 Aligned_cols=78 Identities=27% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhc--CCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAF--GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~--G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
..+.++|||+|||..+|+++|+++|+.| |.|.+++++ +|||||+|.+.++|.+|+..|| +..+.|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l 81 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKALN-GKVLDGSPI 81 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHS-SEEETTEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHhC-CCEeCCcEE
Confidence 4567899999999999999999999999 999998873 5699999999999999999997 799999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||++...
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999997653
No 305
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.2e-14 Score=144.85 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=75.2
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccC--ceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKG--TVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
...+|+|.| ||+++|+++|+++|+.|| .|.+|+|++++ +|+++|||||.|.+.++|.+||+.||+..|.||.
T Consensus 67 ~~~~lfVgn-----L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGN-----LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp --CEEEEES-----CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred CccEEEEeC-----CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 456699999 999999999999999999 99999999997 8999999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|++
T Consensus 142 l~V~~a~~ 149 (229)
T 3q2s_C 142 PVVTPVNK 149 (229)
T ss_dssp CEEEECCH
T ss_pred eEEEECCC
Confidence 99999986
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=3.6e-15 Score=128.68 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=71.9
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
+..+|+|.| ||+++|+++|+++|+.||.|.. .++.++ +|+++|||||.|.+.++|.+||+ ||+..|.|+.|.
T Consensus 16 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 16 TPFNLFIGN-----LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp CSEEEEEEC-----CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 567899999 9999999999999999998888 555554 79999999999999999999999 999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.+|++
T Consensus 89 V~~a~~ 94 (101)
T 1fj7_A 89 LEKPKG 94 (101)
T ss_dssp EECCSC
T ss_pred EEEcCC
Confidence 999987
No 307
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2.2e-14 Score=124.88 Aligned_cols=79 Identities=25% Similarity=0.541 Sum_probs=72.1
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
...+.++|||+|||..+|+++|+++|++||.|.+++++ +|||||+|.+.++|.+|+..|| +..+.|++|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~-g~~~~g~~l~ 96 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVH-GKSFANQPLE 96 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHT-TCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcC-CCEECCeEEE
Confidence 34578999999999999999999999999999999986 5899999999999999999997 7999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999987653
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=123.56 Aligned_cols=80 Identities=21% Similarity=0.493 Sum_probs=72.5
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||+|||..+|+++|+++|+.||.|..+ . .+|.++|||||+|.+.++|.+|+..|+ +..+.|++|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~--~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S--QDGKSKGIAYIEFKSEADAEKNLEEKQ-GAEIDGRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E--ETTEEEEEEEEEESSHHHHHHHHHHTT-EEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C--CCCCcceEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 3467899999999999999999999999988766 2 378899999999999999999999997 79999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
+||.++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998765
No 309
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=7.5e-15 Score=118.98 Aligned_cols=75 Identities=24% Similarity=0.397 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 338 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
+|||+|||+++|+++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999998 5889999999998764
No 310
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.2e-14 Score=122.10 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=71.6
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.+..+|+|.| ||+.+|+++|+++|+.||.|.+|+|+.+ +|||||.|.+.++|.+|++.||+..|.|+.|.
T Consensus 13 ~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 13 TQRSRLFVGN-----LPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCTTEEEEES-----CCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 4567899999 9999999999999999999999999854 79999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.++++
T Consensus 83 v~~a~~ 88 (99)
T 2cpj_A 83 VRFACH 88 (99)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999987
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3.6e-14 Score=118.76 Aligned_cols=79 Identities=29% Similarity=0.472 Sum_probs=63.3
Q ss_pred cCCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcC-CeeecCceE
Q psy3345 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-STHLYGRRL 759 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~-~~~~~Gr~l 759 (787)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ +++ ...+.|++|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 3457899999999999999999999999999999999886 79999999999999983 332 233559999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|.+|.++..
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999997653
No 312
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.2e-14 Score=122.34 Aligned_cols=76 Identities=17% Similarity=0.400 Sum_probs=70.1
Q ss_pred CCcccceEEEecCcccCCCc-cCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIY-KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
...++.+|+|.| ||+ .+|+++|+++|+.||.|.+|.|. +|||||.|.+.++|.+|++.||+..+.|+
T Consensus 6 ~~~~~~~l~V~n-----lp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 6 NIPPKSRLFIGN-----LPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp ---CCEEEEEES-----STTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred cCCCCCEEEEeC-----CCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 345688899999 999 99999999999999999999994 68999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.++++
T Consensus 74 ~l~V~~a~~ 82 (96)
T 2kvi_A 74 KLILEVSSS 82 (96)
T ss_dssp TBCEEEEEC
T ss_pred EEEEEEcCc
Confidence 999999987
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1e-14 Score=145.26 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=76.9
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcC--CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFG--ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G--~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..++|||.|||+.+|+++|+++|+.|| .|.+|+|+++. .+|+++|||||+|.+.++|.+||..|| +..|.|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~-~tg~skGfaFV~f~~~~~a~~Ai~~ln-g~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKLMDLLP-KRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT-TTCCEEEEEEEEESCTTHHHHHHTTST-TSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcC-CCeECCEEeEE
Confidence 567999999999999999999999999 99999999985 689999999999999999999999997 79999999999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
.||.+..
T Consensus 145 ~~a~~~~ 151 (229)
T 3q2s_C 145 TPVNKQF 151 (229)
T ss_dssp EECCHHH
T ss_pred EECCCCc
Confidence 9998655
No 314
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-14 Score=122.75 Aligned_cols=78 Identities=18% Similarity=0.504 Sum_probs=71.0
Q ss_pred CCCCCEEEEecCCc-cCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 682 KQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~-~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
..+.++|||+|||. .+|+++|+++|++||.|.+++|+ +|||||+|.+.++|..|+..|+ +..+.|++|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECES-QEMNFGKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHHT-CSSCBTTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcC-CCeeCCcEEE
Confidence 35788999999998 99999999999999999999983 6799999999999999999997 6999999999
Q ss_pred EEEcccccc
Q psy3345 761 LEWAEEADN 769 (787)
Q Consensus 761 v~~A~~~~~ 769 (787)
|+||.+...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999987654
No 315
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=3.3e-14 Score=130.80 Aligned_cols=79 Identities=15% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecC--ceEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVL 761 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~G--r~l~v 761 (787)
...+|||.|||+.+|+++|+++|++||.|.+|+|..+ .++|||||+|.+.++|..|+..|| |..|+| ++|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~Ln-G~~i~g~g~~L~V 118 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLD-GQNIYNACCTLRI 118 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHST-TBCSSSSCSCEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHhC-CCEecCCCcEEEE
Confidence 3466889999999999999999999999999999654 257999999999999999999997 799976 99999
Q ss_pred EEccccc
Q psy3345 762 EWAEEAD 768 (787)
Q Consensus 762 ~~A~~~~ 768 (787)
+||++++
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9999775
No 316
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=124.39 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=71.0
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
..+..|+|.| ||+++|+++|+++|+.||.|.+|+|+ +++|||||.|.+.++|.+|+..||+..|+|+.|.
T Consensus 25 ~~~~~l~V~n-----lp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 25 PRVTTAYIGN-----IPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp SSCCEEEEES-----CCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCEEEEcC-----CCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3467899999 99999999999999999999999998 4589999999999999999999999999999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.+|++
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999875
No 317
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=121.43 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=71.7
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCc-eEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc-Ccc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGT-VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN-TYV 83 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~-~~~ 83 (787)
|++..+..+|+|.| ||+++|+++|+++|+.||. |..+.+. ++|||||.|.+.++|.+|++.||+ ..|
T Consensus 2 s~~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 2 SSGSSGMNKLYIGN-----LSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCCCCCEEEEC-----CCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCCCCCcEEEEeC-----CCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 45566788899999 9999999999999999998 6777663 479999999999999999999999 999
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|.+|++
T Consensus 71 ~g~~l~v~~a~~ 82 (93)
T 2cqh_A 71 HGKIMEVDYSVS 82 (93)
T ss_dssp TTEECEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999987
No 318
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=5.3e-14 Score=121.20 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred cccceEEEecCcccCCCc-----cCCHHHHHHHhhccCceEEEEEEecC--CCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 10 VPRNHISLLDLDEVEFIY-----KITQEQLKAKFEEKGTVTDVQLKYTT--EGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~--~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
.|+..|.|+| |.. .-+++||+++|++||.|.+|+|+.++ .|+++|||||.|.++++|.+|++.|||..
T Consensus 6 ~~s~~l~l~N-----m~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 6 CPTKVVLLRN-----MVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp SCCSEEEEES-----SSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEc-----CCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 4677899999 642 34899999999999999999999986 37899999999999999999999999999
Q ss_pred cCCceEEEEEccC
Q psy3345 83 VFSSRIKVEKCSN 95 (787)
Q Consensus 83 ~~~~~i~v~~~~~ 95 (787)
++||.|.|.++.+
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999975
No 319
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=8.8e-15 Score=126.05 Aligned_cols=70 Identities=16% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCCccCCHHHHHHHh------------hccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 24 EFIYKITQEQLKAKF------------EEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 24 ~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
|||+.+|+++|+++| ++||.|.+|.|+.++.|+++|||||.|.++++|.+|++.|||..++||.|.|.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~ 101 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEE
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
Confidence 499999999888877 99999999999998889999999999999999999999999999999999999
Q ss_pred Ec
Q psy3345 92 KC 93 (787)
Q Consensus 92 ~~ 93 (787)
++
T Consensus 102 ~s 103 (104)
T 1jmt_A 102 LS 103 (104)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 320
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=135.17 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=78.6
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeE--------EEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeee
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKF--------VRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL 754 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~--------v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~ 754 (787)
.+.++|||+|||..+|+++|+++|++||.|.+ |+|+.+. .+|+++|||||+|.+.++|.+|+..|| +..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-ETGKLKGEATVSFDDPPSAKAAIDWFD-GKEF 82 (116)
Confidence 46789999999999999999999999999998 8898885 578999999999999999999999997 7999
Q ss_pred cCceEEEEEcccccc
Q psy3345 755 YGRRLVLEWAEEADN 769 (787)
Q Consensus 755 ~Gr~l~v~~A~~~~~ 769 (787)
.|++|.|+||.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999997654
No 321
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=2.9e-14 Score=125.04 Aligned_cols=77 Identities=26% Similarity=0.491 Sum_probs=70.6
Q ss_pred CCCCCEEEEecCCcc-CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEE
Q psy3345 682 KQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~ 760 (787)
....++|||.|||.. +|+++|+++|++||.|..|+| ++|||||+|.+.++|.+|+..|+ +..+.|++|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~ 93 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGEN-GRVLAGQTLD 93 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHT-TCEETTEECC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcC-CCEECCeEEE
Confidence 345689999999999 999999999999999999998 36899999999999999999997 7999999999
Q ss_pred EEEccccc
Q psy3345 761 LEWAEEAD 768 (787)
Q Consensus 761 v~~A~~~~ 768 (787)
|+||.+..
T Consensus 94 V~~a~~~~ 101 (110)
T 1wf1_A 94 INMAGEPK 101 (110)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998543
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=8.8e-15 Score=126.47 Aligned_cols=84 Identities=21% Similarity=0.482 Sum_probs=75.9
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
...++|||+|||..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+. + +..+.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~-~~~~~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--S-QINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--C-CCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHh--C-CCeECCEEEEEE
Confidence 356899999999999999999999999999999999984 89999999999999999999999 5 799999999999
Q ss_pred EccccccHH
Q psy3345 763 WAEEADNVE 771 (787)
Q Consensus 763 ~A~~~~~~~ 771 (787)
+|.++....
T Consensus 82 ~a~~~~~~~ 90 (102)
T 2xs2_A 82 PAIRKQNLS 90 (102)
T ss_dssp EEEECC---
T ss_pred ECCcCcchh
Confidence 999777653
No 323
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=1.7e-14 Score=128.14 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=73.4
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCee--EEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELK--FVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~--~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
....++|||+|||+.+|+++|+++|+.| .|. +|+|+++. .|+++|||||+|.+.++|.+||.. + +..+.||.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~--~GrsrGfaFV~F~~~e~A~~Al~~-~-~~~l~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP--EGKITGEAFVQFASQELAEKALGK-H-KERIGHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS--SSSSCSEEEEEESSTTHHHHHHTT-T-TCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC--CCCCceEEEEEECCHHHHHHHHHH-C-CCEECCEEE
Confidence 3467899999999999999999999999 577 89999985 599999999999999999999985 4 589999999
Q ss_pred EEEEccccc
Q psy3345 760 VLEWAEEAD 768 (787)
Q Consensus 760 ~v~~A~~~~ 768 (787)
.|.+|.+++
T Consensus 114 ~V~~a~~~e 122 (126)
T 2hgm_A 114 EVFKSSQEE 122 (126)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999997543
No 324
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6e-14 Score=119.71 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=73.6
Q ss_pred CCCCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEE-EEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 4 HLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDV-QLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
++..+...+.+|+|.| ||+++|+++|+++|+.||.|.+| .|+.++. .|.|||.|.+.++|.+|++.||+..
T Consensus 7 ~~~~~~~~~~~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~ 78 (96)
T 2e44_A 7 GSVPKRQRIRKLQIRN-----IPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQ 78 (96)
T ss_dssp SCCCCCCSCCCEEEEE-----ECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCCCCEEEEEc-----CCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3344445577899999 99999999999999999999999 5777643 3349999999999999999999999
Q ss_pred cCCceEEEEEccC
Q psy3345 83 VFSSRIKVEKCSN 95 (787)
Q Consensus 83 ~~~~~i~v~~~~~ 95 (787)
|+||.|.|.+|.+
T Consensus 79 ~~g~~l~V~~a~~ 91 (96)
T 2e44_A 79 LENFTLKVAYIPD 91 (96)
T ss_dssp CSSCBCEEEECCC
T ss_pred ECCcEEEEEEcCc
Confidence 9999999999987
No 325
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=123.80 Aligned_cols=83 Identities=58% Similarity=0.984 Sum_probs=77.4
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEecCccc
Q psy3345 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 523 (787)
....++|+|+|||+.+++++|+++|++||.|..|.+++++++|||+|.+.++|.+|+..|||..+.|++|.|+|++...+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988866
Q ss_pred ccc
Q psy3345 524 AEA 526 (787)
Q Consensus 524 ~~~ 526 (787)
...
T Consensus 87 ~~~ 89 (111)
T 1whx_A 87 GAA 89 (111)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=132.13 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEE------EEEecCCCCcceEEEEEecCHHHHHHHHHHhc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDV------QLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~ 79 (787)
..+..++.+|+|.| ||+++|+++|+++|+.||.|..| .+....+|+++|||||.|.+.++|.+|+..||
T Consensus 39 ~~~~~~~~~l~V~n-----Lp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 39 YEPGEPNCRIYVKN-----LAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CCCCSCCSEEEEEE-----ECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred cCCCCCCCEEEEeC-----CCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 34566788999999 99999999999999999988764 22222469999999999999999999999999
Q ss_pred cCccCCceEEEEEccC
Q psy3345 80 NTYVFSSRIKVEKCSN 95 (787)
Q Consensus 80 ~~~~~~~~i~v~~~~~ 95 (787)
+..|.|+.|.|.+|++
T Consensus 114 g~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 114 GYVLFGKPMVVQFARS 129 (143)
T ss_dssp TBEETTEECEEEECCC
T ss_pred CCEeCCcEEEEEECCC
Confidence 9999999999999986
No 327
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=6.3e-14 Score=122.82 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=71.6
Q ss_pred CCCcccceEEEecCcccCCCcc-CCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYK-ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
.|..++.+|+|.| ||+. +|+++|+++|+.||.|.+|.| ++|||||.|.+.++|.+|++.||+..|+|
T Consensus 22 ~~~~~~~~l~V~n-----l~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 22 DPKSINSRVFIGN-----LNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CCTTCSSEEEECS-----CCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCCCCCcEEEEeC-----CCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3445567899999 9999 999999999999999999999 57999999999999999999999999999
Q ss_pred ceEEEEEccC
Q psy3345 86 SRIKVEKCSN 95 (787)
Q Consensus 86 ~~i~v~~~~~ 95 (787)
+.|.|.+|++
T Consensus 90 ~~l~V~~a~~ 99 (110)
T 1wf1_A 90 QTLDINMAGE 99 (110)
T ss_dssp EECCEEESCC
T ss_pred eEEEEEECCC
Confidence 9999999986
No 328
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=118.18 Aligned_cols=77 Identities=18% Similarity=0.343 Sum_probs=70.6
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhcc--CceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEK--GTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
...+..+|+|.| ||+++|+++|+++|+.| |.|..|+++ +|||||.|.+.++|.+|++.||+..|.|
T Consensus 11 ~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 11 TMSSVKILYVRN-----LMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CSSCCCEEEEES-----CCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred ccCCcCEEEEeC-----CCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 344677899999 99999999999999999 899999875 5799999999999999999999999999
Q ss_pred ceEEEEEccCC
Q psy3345 86 SRIKVEKCSNL 96 (787)
Q Consensus 86 ~~i~v~~~~~~ 96 (787)
+.|.|.+|++.
T Consensus 79 ~~l~v~~a~~~ 89 (99)
T 2cpd_A 79 SPIEVTLAKPV 89 (99)
T ss_dssp EEEEEECCCCC
T ss_pred cEEEEEECCCC
Confidence 99999999873
No 329
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=6e-14 Score=133.69 Aligned_cols=85 Identities=31% Similarity=0.450 Sum_probs=78.8
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..++++|||.|||..+|+++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|| +..+.|+.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~ln-g~~l~Gr~l~V 161 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYK-GVPLDGRPMDI 161 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHST-TCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhC-CCEECCEEEEE
Confidence 3567899999999999999999999999999999999984 89999999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.+...
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99986543
No 330
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=117.49 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=70.9
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|| .+|+++|+++|++||.|.+|+|.. ++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-------PRNCAFVTYEKMESADQAVAELN-GTQVESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHTT-TEEETTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-------CCCEEEEEECCHHHHHHHHHHhC-CCeECCeEEEE
Confidence 456789999996 899999999999999999999853 58999999999999999999997 79999999999
Q ss_pred EEcccccc
Q psy3345 762 EWAEEADN 769 (787)
Q Consensus 762 ~~A~~~~~ 769 (787)
+||.++..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99987654
No 331
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.3e-15 Score=133.50 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=76.3
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEE--------EEEEecC-CCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTD--------VQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
.++.+|+|.| ||+++|+++|+++|+.||.|.+ |.|+.++ +|+++|||||.|.+.++|.+|++.||+
T Consensus 5 ~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 5 SDNNTIFVQG-----LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 3567889999 9999999999999999999998 9999986 699999999999999999999999999
Q ss_pred CccCCceEEEEEccC
Q psy3345 81 TYVFSSRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~~~i~v~~~~~ 95 (787)
..|+|+.|.|.+|++
T Consensus 80 ~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 80 KEFSGNPIKVSFATR 94 (116)
Confidence 999999999999987
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.9e-14 Score=119.41 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCC-eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCC-eeecCceE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGE-LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS-THLYGRRL 759 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~-I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~-~~~~Gr~l 759 (787)
..+.++|||.|||..+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|| + ..+.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--------~~g~afV~f~~~~~A~~A~~~l~-g~~~~~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--------KSGYAFVDYPDQNWAIRAIETLS-GKVELHGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--------ETTEEEECCSCHHHHHHHHHHHT-TTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--------CCCEEEEEECCHHHHHHHHHHcc-CCeeECCEEE
Confidence 346789999999999999999999999999 6656552 47899999999999999999997 7 89999999
Q ss_pred EEEEcccccc
Q psy3345 760 VLEWAEEADN 769 (787)
Q Consensus 760 ~v~~A~~~~~ 769 (787)
.|+||.++..
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9999997654
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=9e-14 Score=122.73 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=66.9
Q ss_pred EEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceE-EEEEecCHHHHHHHHHHhcCCeeecC--ceEEEEE
Q psy3345 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF-GFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEW 763 (787)
Q Consensus 687 ~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~-afV~F~~~~~A~~Al~~l~~~~~~~G--r~l~v~~ 763 (787)
.|||.|||+.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|| |..|+| +.|+|+|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~Ln-G~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALN-GADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHT-TCCCBTTBSEEEEEC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhC-CCEecCCCeEEEEEE
Confidence 4579999999999999999999999999999653 286 9999999999999999997 799988 6999999
Q ss_pred ccccc
Q psy3345 764 AEEAD 768 (787)
Q Consensus 764 A~~~~ 768 (787)
|++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 99775
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=6.2e-14 Score=117.33 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=70.2
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEE
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEW 763 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~ 763 (787)
..++|||+|||..+|+++|+++|++| .|.++++. +++|||||+|.+.++|.+|+..|| +..+.|++|+|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~-g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFH-QYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHT-TEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhC-CCeECCcEEEEEE
Confidence 46789999999999999999999999 89999985 368999999999999999999997 7999999999999
Q ss_pred ccccc
Q psy3345 764 AEEAD 768 (787)
Q Consensus 764 A~~~~ 768 (787)
|..+.
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97654
No 335
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=5.9e-14 Score=117.48 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=69.7
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEE
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v 90 (787)
.+.+|+|.| ||+++|+++|+++|+.| .|.+|+|. +++|||||.|.+.++|.+|++.||+..++|++|.|
T Consensus 4 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 4 GSSGILVKN-----LPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCEEEES-----CCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeC-----CCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 467799999 99999999999999999 99999985 67999999999999999999999999999999999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
.+|..
T Consensus 73 ~~a~~ 77 (88)
T 1wg1_A 73 QLQPT 77 (88)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99975
No 336
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.8e-14 Score=120.36 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=71.7
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcC----HHH----HHHHHH--HhCCce
Q psy3345 337 GRIFVRNL----SYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM----PEH----ATQAYQ--HLDGTV 402 (787)
Q Consensus 337 ~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~----~~~----A~~a~~--~l~~~~ 402 (787)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 433 889988 789999
Q ss_pred eCCeEEEEeeCCC
Q psy3345 403 FLGRMLHLIPGKP 415 (787)
Q Consensus 403 ~~g~~l~v~~~~~ 415 (787)
|.|+.|+|..-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998653
No 337
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=116.33 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (787)
..-...+|+|.| ||+++|+++|+++|+.||.|.+| +.++ +|+ ||||.|.+.++|.+|+. ||+..|+|+
T Consensus 4 ~~~~~~~l~V~n-----l~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 4 GSSGLRSVFVSG-----FPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp CCTTCCEEEEEC-----CCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred ccCCCCEEEEEC-----CCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 344567899999 99999999999999999999987 4444 454 99999999999999999 999999999
Q ss_pred eEEEEEccC
Q psy3345 87 RIKVEKCSN 95 (787)
Q Consensus 87 ~i~v~~~~~ 95 (787)
.|.|.++.+
T Consensus 73 ~l~V~~a~~ 81 (94)
T 2e5g_A 73 RLRVRPREQ 81 (94)
T ss_dssp ECCCBCSCC
T ss_pred EEEEEECCc
Confidence 999998876
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.9e-13 Score=119.46 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCCCcccce--EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceE-EEEEecCHHHHHHHHHHhccCc
Q psy3345 6 SGPVVPRNH--ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRF-AFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 6 ~~~~~~~~~--~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~-afv~f~~~~~a~~a~~~~~~~~ 82 (787)
.+|..|+.. |+|.| |||.+|+++|+++|+.||.|.+|.|.. + .|| |||.|.+.++|..|++.|||..
T Consensus 17 ~~~~~ps~vl~l~V~N-----L~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~ 86 (124)
T 2e5i_A 17 DDPSGGNKVLLLSIQN-----PLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGAD 86 (124)
T ss_dssp CCCCCCCSEEEEEEES-----CCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCCCCcEEEEEEcC-----cCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 345555544 34677 999999999999999999999999965 2 386 9999999999999999999999
Q ss_pred cCC--ceEEEEEccC
Q psy3345 83 VFS--SRIKVEKCSN 95 (787)
Q Consensus 83 ~~~--~~i~v~~~~~ 95 (787)
|.| +.|.|.+|++
T Consensus 87 i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 87 IYAGCCTLKIEYARP 101 (124)
T ss_dssp CBTTBSEEEEECCSC
T ss_pred ecCCCeEEEEEEecC
Confidence 987 6999999987
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.7e-13 Score=115.74 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=69.8
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+..+..+|+|.| | ++|+++|+++|+.||.|.+|.|. +++|||||.|.+.++|.+||..||+..|.|+.
T Consensus 11 ~~~~~~~l~V~n-----~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 11 APRKGNTLYVYG-----E--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCCCSEEEEEC-----S--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCEEEEcC-----C--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344667899999 6 89999999999999999999994 56899999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 79 l~v~~a~~ 86 (97)
T 1x5p_A 79 LKVNIARK 86 (97)
T ss_dssp EEEECCSS
T ss_pred EEEEECCC
Confidence 99999987
No 340
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=1.1e-13 Score=115.68 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc--c
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY--V 83 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~--~ 83 (787)
+.+..+...|+|.| ||+++||++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+ +++.. +
T Consensus 5 ~~~~~~~~~l~V~~-----Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~ 71 (89)
T 3d2w_A 5 HHHHHHGSKVFVGR-----CTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLII 71 (89)
T ss_dssp ------CCEEEEES-----CCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEE
T ss_pred CCCCCCCCEEEEeC-----CCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCccc
Confidence 34566788899999 9999999999999999999999999874 79999999999999984 35554 5
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|..|.+
T Consensus 72 ~g~~v~v~~a~~ 83 (89)
T 3d2w_A 72 KGISVHISNAEP 83 (89)
T ss_dssp TTEEEEEEECC-
T ss_pred CCEEEEEEEcCC
Confidence 699999999986
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=1.2e-13 Score=122.65 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=71.5
Q ss_pred CCCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEE
Q psy3345 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v 761 (787)
..+.++|||.|| .+|+++|+++|+.||.|.+|+|.. ++|||||+|.+.++|.+|+..|| +..+.|++|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-------~kg~aFV~f~~~~~A~~Ai~~ln-g~~~~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-------PRNCAFVTYEKMESADQAVAELN-GTQVESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-------TTTEEEEECSSHHHHHHHHHHHT-TCBCSSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhC-CCEECCeEEEE
Confidence 356899999996 699999999999999999999863 58999999999999999999997 69999999999
Q ss_pred EEccccccHHHHH
Q psy3345 762 EWAEEADNVEDIR 774 (787)
Q Consensus 762 ~~A~~~~~~~~~~ 774 (787)
+||.+....+.+.
T Consensus 106 ~~a~~~~~~~~~~ 118 (121)
T 2bz2_A 106 NIARKQPMLDAAT 118 (121)
T ss_dssp EECCSSCC-----
T ss_pred EEeCCCCCCCCCC
Confidence 9999887655443
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=1.8e-13 Score=125.95 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=66.6
Q ss_pred EEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC--ceEEEEE
Q psy3345 15 ISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS--SRIKVEK 92 (787)
Q Consensus 15 ~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~--~~i~v~~ 92 (787)
|+|.| |||.+|+++|+++|+.||.|.+|.|..+ +++|||||.|.+.++|.+|++.|||..|.| +.|.|++
T Consensus 49 l~VgN-----L~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 49 IIVEN-----LFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEECS-----CCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred EEEeC-----cCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 55666 9999999999999999999999998653 368999999999999999999999999955 9999999
Q ss_pred ccC
Q psy3345 93 CSN 95 (787)
Q Consensus 93 ~~~ 95 (787)
|++
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 997
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=2.4e-13 Score=120.36 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=66.8
Q ss_pred eEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceE-EEEEecCHHHHHHHHHHhccCccCC--ceEEE
Q psy3345 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRF-AFIGYHREDQAQAALDYFNNTYVFS--SRIKV 90 (787)
Q Consensus 14 ~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~-afv~f~~~~~a~~a~~~~~~~~~~~--~~i~v 90 (787)
+|+|.| |||.+|+++|+++|+.||.|.+|.|+.+ ++|| |||.|.+.++|.+|++.|||..|.| +.|+|
T Consensus 30 ~I~V~N-----L~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 30 RIIVEN-----LFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp EEEEES-----CCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred EEEECC-----CCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 355777 9999999999999999999999988764 3688 9999999999999999999999988 99999
Q ss_pred EEccC
Q psy3345 91 EKCSN 95 (787)
Q Consensus 91 ~~~~~ 95 (787)
++|++
T Consensus 101 ~~ak~ 105 (130)
T 3zzy_A 101 DFSKL 105 (130)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 99987
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=111.25 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred CCCCcccce-EEEecCcccCCCccCCHHH----HHHHhhccC-ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc
Q psy3345 6 SGPVVPRNH-ISLLDLDEVEFIYKITQEQ----LKAKFEEKG-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79 (787)
Q Consensus 6 ~~~~~~~~~-~~~~~l~~~~lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~ 79 (787)
|+...|+.- |.|+| ||+.+++++ |+++|+.|| .|.+| .| |+|||.|.+.++|++|++.||
T Consensus 2 ~~~~~p~~T~lYV~N-----L~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 2 SSGSSGCHTLLYVYN-----LPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp CSSCCCSSEEEEEES-----CCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCcceEEEEeC-----CCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhc
Confidence 344445665 77999 999999998 558999994 99999 23 999999999999999999999
Q ss_pred cCccCCceEEEEEccC
Q psy3345 80 NTYVFSSRIKVEKCSN 95 (787)
Q Consensus 80 ~~~~~~~~i~v~~~~~ 95 (787)
|..+.||.|+|.+|+.
T Consensus 68 G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 68 NEDVFGNRIIVSFTPK 83 (96)
T ss_dssp TCCSSSSCCEEESSCC
T ss_pred CCccCCceEEEEecCC
Confidence 9999999999999997
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=1.6e-13 Score=114.74 Aligned_cols=75 Identities=23% Similarity=0.467 Sum_probs=69.6
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhcc----C-------ceEEEEEEecCCCCcceEEEEEecCHHHHHHHH
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEK----G-------TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAAL 75 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 75 (787)
||.-++.+|+|.| ||+++|+++|+++|+.| | .|.+|.+..+ +|||||.|.+.++|.+|+
T Consensus 1 g~~~~~~~l~V~n-----Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 1 GPLGSARRLYVGN-----IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp CCSGGGGEEEEES-----CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG
T ss_pred CCCCCCCEEEEeC-----CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH
Confidence 5677889999999 99999999999999999 8 8999998765 799999999999999999
Q ss_pred HHhccCccCCceEEEEE
Q psy3345 76 DYFNNTYVFSSRIKVEK 92 (787)
Q Consensus 76 ~~~~~~~~~~~~i~v~~ 92 (787)
.||+..|+||.|.|..
T Consensus 71 -~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp -GGTTCEETTEECEEEC
T ss_pred -hcCCCEECCeEEEEeC
Confidence 9999999999999973
No 346
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=2.8e-13 Score=116.72 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCCEEEEecC--CccCc--------HHHHHHHHHhcCCeeEEEeccccCC-CCCCceEEEEEecCHHHHHHHHHHhcCC
Q psy3345 683 QTGSKILVRNI--PFQAK--------QSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQS 751 (787)
Q Consensus 683 ~~~~~l~V~nL--p~~~t--------~~dL~~~F~~~G~I~~v~i~~~~~~-~g~~~g~afV~F~~~~~A~~Al~~l~~~ 751 (787)
.|++.|.|+|+ |.++. .+||++.|++||.|.+|+|+++... +++++|+|||+|.++++|.+|+..|| |
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln-G 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT-G 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT-T
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC-C
Confidence 47889999999 44443 4789999999999999999988521 24689999999999999999999997 7
Q ss_pred eeecCceEEEEEcccc
Q psy3345 752 THLYGRRLVLEWAEEA 767 (787)
Q Consensus 752 ~~~~Gr~l~v~~A~~~ 767 (787)
+.+.||.|+|+|+.++
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999999754
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=1.3e-13 Score=121.72 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=67.3
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce---
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR--- 87 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~--- 87 (787)
...+|+|.| ||+++|++||+++|+.||.|.+|.|+.+ |||||+|.+.++|++||+.||+..|+|+.
T Consensus 15 ~~~~l~V~n-----Lp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSG-----LPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEE-----CCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 567899999 9999999999999999999999999875 89999999999999999999999999998
Q ss_pred --EEEEEccC
Q psy3345 88 --IKVEKCSN 95 (787)
Q Consensus 88 --i~v~~~~~ 95 (787)
|.|..+.+
T Consensus 84 ~~i~v~~~~~ 93 (115)
T 3beg_B 84 AYIRVKVDGP 93 (115)
T ss_dssp CBCEEEECC-
T ss_pred EEEEeccCCC
Confidence 88887775
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=4.8e-13 Score=129.44 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHh--CCCccCCeEEEEEecCccccchhhhhhhccccccCCCCCEEEEecCCccCcHHHHHHHHHhcCCee
Q psy3345 636 TRESLNQALKVL--QNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELK 713 (787)
Q Consensus 636 ~~e~A~~A~~~l--ng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~ 713 (787)
+.+....|+... ....+.+....|........+...... ......++|||+|||+.+|+++|+++|++||.|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~-----~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 137 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEY-----KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVL 137 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHH-----HHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhh-----hhccccCEEEecCCCCcCCHHHHHHHHhcCCCEE
Confidence 567778888766 444555555555444211110000000 0112357899999999999999999999999999
Q ss_pred EEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccc
Q psy3345 714 FVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767 (787)
Q Consensus 714 ~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~ 767 (787)
+|+|+++. +|.++|||||+|.+.++|.+|+..++ ..+.|++|.|.|+..-
T Consensus 138 ~v~i~~~~--~~~~kG~aFVeF~~~e~A~~A~~~~~--~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 138 NIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPG--QKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEEEECT--TCCEEEEEEEEESSHHHHHHHHHCTT--CEETTEECEEEETTTC
T ss_pred EEEEEECC--CCCcccEEEEEECCHHHHHHHHHhCC--CeECCEEEEEEEhHHH
Confidence 99999984 69999999999999999999998774 5899999999998754
No 349
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=113.68 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEeeC
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG 413 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 413 (787)
...++|||+|||+++|+++|+++|+.||.|.+| +.++.+|. ||||+|.+.++|.+|++ |+|..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 55555555 99999999999999999 9999999999999988
Q ss_pred CCC
Q psy3345 414 KPK 416 (787)
Q Consensus 414 ~~~ 416 (787)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 765
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=120.63 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-C---CCcceEEEEEecCHHHHHHHHHHhccCcc
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-E---GKFRRFAFIGYHREDQAQAALDYFNNTYV 83 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~---g~~~g~afv~f~~~~~a~~a~~~~~~~~~ 83 (787)
..-++.+|+|.| ||+++|+++|+++|+.||.|. +.++.++ + |+++|||||.|.+.++|++||+.|++ +
T Consensus 4 ~~~~~~~lfVgn-----Lp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~ 75 (114)
T 2dnl_A 4 GSSGSRKVFVGG-----LPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E 75 (114)
T ss_dssp SSSCCCCEEEEC-----CCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E
T ss_pred CCCCCCEEEEcC-----CCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c
Confidence 344578899999 999999999999999999999 8888876 3 79999999999999999999999854 7
Q ss_pred CCceEEEEEccC
Q psy3345 84 FSSRIKVEKCSN 95 (787)
Q Consensus 84 ~~~~i~v~~~~~ 95 (787)
+|+.|.|..+.+
T Consensus 76 ~G~~~~~~~~~~ 87 (114)
T 2dnl_A 76 DGKLYLCVSSPT 87 (114)
T ss_dssp TTEEEEEECCSS
T ss_pred CCcEEEeccCCC
Confidence 888888876654
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=2.2e-13 Score=117.43 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=71.7
Q ss_pred cccceEEEecCcccCC--CccC--------CHHHHHHHhhccCceEEEEEEecCCC---CcceEEEEEecCHHHHHHHHH
Q psy3345 10 VPRNHISLLDLDEVEF--IYKI--------TQEQLKAKFEEKGTVTDVQLKYTTEG---KFRRFAFIGYHREDQAQAALD 76 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~l--p~~~--------~~~~l~~~f~~~g~i~~~~~~~~~~g---~~~g~afv~f~~~~~a~~a~~ 76 (787)
.|+..|+|+| | |..+ +++||++.|++||.|.+|+|+.++.+ +++|+|||.|.++++|.+|++
T Consensus 3 ~ps~vl~L~N-----m~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~ 77 (105)
T 3v4m_A 3 HPTEVLCLMN-----MVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQ 77 (105)
T ss_dssp SCCSEEEEES-----SCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEEC-----CCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHH
Confidence 3678899999 5 4343 45799999999999999999998753 689999999999999999999
Q ss_pred HhccCccCCceEEEEEccC
Q psy3345 77 YFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 77 ~~~~~~~~~~~i~v~~~~~ 95 (787)
.|||..++||.|.|.++.+
T Consensus 78 ~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 78 GLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHTTCEETTEECEEEEECH
T ss_pred HhCCCEeCCCEEEEEEeCH
Confidence 9999999999999999875
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=115.03 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=67.7
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEE
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~ 762 (787)
.+.++|||.|||..+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|+.. ...+.|++|.|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~~~~---~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSLCGE---DLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHTTTC---EEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHHhcC---CceeCCEEEEEE
Confidence 35789999999999999999999999999999999876 689999999999999865321 245689999999
Q ss_pred Ecccccc
Q psy3345 763 WAEEADN 769 (787)
Q Consensus 763 ~A~~~~~ 769 (787)
||.++..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9997764
No 353
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=3.4e-13 Score=118.92 Aligned_cols=76 Identities=16% Similarity=0.382 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCce----
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR---- 758 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~---- 758 (787)
...++|||.|||+.+|+++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+||..|| +..|.|++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~-g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLD-NTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHHT-TCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHhC-CCEECCcEeeeE
Confidence 35689999999999999999999999999999999764 899999999999999999997 79999998
Q ss_pred -EEEEEcccc
Q psy3345 759 -LVLEWAEEA 767 (787)
Q Consensus 759 -l~v~~A~~~ 767 (787)
|.|..+.+.
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 777777653
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=4.7e-13 Score=117.48 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=71.8
Q ss_pred CCCEEEEecC--CccC---cHHHHHHHHHhcCCeeEEEeccccC---CCCCCceEEEEEecCHHHHHHHHHHhcCCeeec
Q psy3345 684 TGSKILVRNI--PFQA---KQSEVEELFKAFGELKFVRLPKKMV---GSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755 (787)
Q Consensus 684 ~~~~l~V~nL--p~~~---t~~dL~~~F~~~G~I~~v~i~~~~~---~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~ 755 (787)
++++|+|+|+ |.++ .++||++.|++||.|.+|+|+++.. .+++++|+|||+|.++++|.+|+..|| |+.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-Gr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-GRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-TCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-CCEEC
Confidence 6889999999 3333 3689999999999999999998852 246788999999999999999999997 79999
Q ss_pred CceEEEEEccc
Q psy3345 756 GRRLVLEWAEE 766 (787)
Q Consensus 756 Gr~l~v~~A~~ 766 (787)
||.|+|+|+.+
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999975
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=4.5e-13 Score=129.68 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=72.9
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEE
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 91 (787)
...|+|.| ||+++|+++|+++|+.||.|..|.|+++.+|+++|||||.|.+.++|.+|++.+ +..++||.|.|.
T Consensus 109 ~~~l~V~n-----Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKG-----FPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HTEEEEEC-----CCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred cCEEEecC-----CCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 45699999 999999999999999999999999999989999999999999999999999875 569999999999
Q ss_pred EccC
Q psy3345 92 KCSN 95 (787)
Q Consensus 92 ~~~~ 95 (787)
+++.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 8875
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=5.5e-13 Score=145.56 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=77.2
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC-CCCcceEEEEEecCHHHHHHHHHHhccCccCCceE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i 88 (787)
.+...|+|.| ||+.+|+++|+++|+.||.|..|.|+.++ +|+++|||||.|.+.++|.+||..||+..|.|+.|
T Consensus 100 ~~~~~lfV~n-----L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 100 DAFKTLFVAR-----VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 4557899999 99999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEEccC
Q psy3345 89 KVEKCSN 95 (787)
Q Consensus 89 ~v~~~~~ 95 (787)
.|.+|.+
T Consensus 175 ~V~~a~~ 181 (437)
T 3pgw_S 175 LVDVERG 181 (437)
T ss_pred EEEEeCC
Confidence 9999986
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=5.4e-13 Score=111.42 Aligned_cols=72 Identities=26% Similarity=0.503 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhc----C-------CeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCC
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAF----G-------ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS 751 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~----G-------~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~ 751 (787)
.+.++|||+|||..+|+++|+++|++| | .|.+++++++ +|||||+|.+.++|.+|+ .|| +
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l~-g 74 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AFD-G 74 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHG-GGT-T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHH-hcC-C
Confidence 356899999999999999999999999 8 8999998765 799999999999999999 997 7
Q ss_pred eeecCceEEEEE
Q psy3345 752 THLYGRRLVLEW 763 (787)
Q Consensus 752 ~~~~Gr~l~v~~ 763 (787)
..+.|++|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.3e-13 Score=117.62 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCC---CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q psy3345 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET---DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410 (787)
Q Consensus 334 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 410 (787)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 888888776 7999999999999999999999884 366666666
Q ss_pred eeC
Q psy3345 411 IPG 413 (787)
Q Consensus 411 ~~~ 413 (787)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=9.6e-13 Score=116.84 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCce
Q psy3345 8 PVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87 (787)
Q Consensus 8 ~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 87 (787)
+..++.+|+|.| | ++|+++|+++|+.||.|.+|.|. +++|||||.|.+.++|.+|++.||+..|.|+.
T Consensus 35 ~~~~~~~lfVgn-----l--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 35 APRKGNTLYVYG-----E--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCCCEEEEEC-----S--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCCEEEEcC-----C--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345678899999 6 59999999999999999999996 56899999999999999999999999999999
Q ss_pred EEEEEccC
Q psy3345 88 IKVEKCSN 95 (787)
Q Consensus 88 i~v~~~~~ 95 (787)
|.|.+|.+
T Consensus 103 l~V~~a~~ 110 (121)
T 2bz2_A 103 LKVNIARK 110 (121)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99999987
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=8.8e-13 Score=130.03 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCCCCEEEEecCCccC---------cHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCe
Q psy3345 682 KQTGSKILVRNIPFQA---------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST 752 (787)
Q Consensus 682 ~~~~~~l~V~nLp~~~---------t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~ 752 (787)
....++|||+|||..+ ++++|+++|++||.|.+|+|+.. +|||||+|.+.++|..|+..|+ +.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am~-g~ 202 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFAKEAMS-NQ 202 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHHHT-TC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHHHHHhC-CC
Confidence 4567899999999998 79999999999999999999864 7999999999999999999997 68
Q ss_pred ee------------cCceEEEEEcccccc
Q psy3345 753 HL------------YGRRLVLEWAEEADN 769 (787)
Q Consensus 753 ~~------------~Gr~l~v~~A~~~~~ 769 (787)
.| .|+.|.|.||.++.+
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 88 899999999997665
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.1e-12 Score=115.02 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=70.8
Q ss_pred ccceEEEecCcccCC--CccC---CHHHHHHHhhccCceEEEEEEecCC-----CCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 11 PRNHISLLDLDEVEF--IYKI---TQEQLKAKFEEKGTVTDVQLKYTTE-----GKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 11 ~~~~~~~~~l~~~~l--p~~~---~~~~l~~~f~~~g~i~~~~~~~~~~-----g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
|+..|+|+| | |-.+ .++||++.|++||.|.+|+|+.++. |+++|+|||.|.++++|.+|++.|||
T Consensus 19 ps~vl~L~N-----m~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRN-----MVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEES-----CSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-----CCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 678899999 5 3222 4799999999999999999999863 56889999999999999999999999
Q ss_pred CccCCceEEEEEccC
Q psy3345 81 TYVFSSRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~~~i~v~~~~~ 95 (787)
..++||.|.|.++.+
T Consensus 94 r~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCcEEEEEEcCh
Confidence 999999999999875
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.9e-13 Score=111.88 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=65.9
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
.++.+|+|.| ||+++|+++|+++|+.||.|.+|.|+.+ ++|||||.|.+.++|++|+.. ...+.|+.|.
T Consensus 3 ~~~~~l~V~n-----Lp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~ 71 (88)
T 1wf0_A 3 SGSSGVFVGR-----CTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVH 71 (88)
T ss_dssp SCCCEEEEES-----CCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEE
T ss_pred CCCcEEEEeC-----CCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEE
Confidence 4578899999 9999999999999999999999999864 789999999999999865432 3456999999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.++.+
T Consensus 72 v~~a~~ 77 (88)
T 1wf0_A 72 ISNAEP 77 (88)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999987
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.3e-12 Score=112.98 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=70.5
Q ss_pred cCCCCCEEEEecCCccC-----------cHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhc
Q psy3345 681 AKQTGSKILVRNIPFQA-----------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~~-----------t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~ 749 (787)
...++++|+|+||.... ++++|+++|++||.|.+|.|+.. .++|||||+|.+.++|.+|+..||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-----~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-----HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-----CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-----CCCEEEEEEECCHHHHHHHHHHcC
Confidence 34578999999994332 26899999999999999977322 379999999999999999999997
Q ss_pred CCeeecCceEEEEEcccccc
Q psy3345 750 QSTHLYGRRLVLEWAEEADN 769 (787)
Q Consensus 750 ~~~~~~Gr~l~v~~A~~~~~ 769 (787)
+..+.||+|.|+||.+..+
T Consensus 86 -g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 -GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp -TCEETTEECEEEECCSCCC
T ss_pred -CCEECCcEEEEEEeCCCCC
Confidence 7999999999999988654
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=6.2e-13 Score=114.44 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=64.0
Q ss_pred EecCCccCcHHHHHHHH------------HhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 690 VRNIPFQAKQSEVEELF------------KAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 690 V~nLp~~~t~~dL~~~F------------~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
+.|||..+++++|++.| ++||.|.+|+|+++. .|+++|||||+|.++++|.+|+..|| |+.+.||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~--~~~~~G~~fV~f~~~~~A~~A~~~ln-g~~~~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL--GDHLVGNVYVKFRREEDAEKAVIDLN-NRWFNGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS--SSSSEEEEEEEESCHHHHHHHHHHHT-TCEETTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC--CCCccEEEEEEECCHHHHHHHHHHHC-CCEECCE
Confidence 56777788887776666 999999999999884 68899999999999999999999997 7999999
Q ss_pred eEEEEEc
Q psy3345 758 RLVLEWA 764 (787)
Q Consensus 758 ~l~v~~A 764 (787)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999997
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.6e-12 Score=111.77 Aligned_cols=79 Identities=9% Similarity=0.235 Sum_probs=68.4
Q ss_pred CcccceEEEecCcccCCCccC-----------CHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHH
Q psy3345 9 VVPRNHISLLDLDEVEFIYKI-----------TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77 (787)
Q Consensus 9 ~~~~~~~~~~~l~~~~lp~~~-----------~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 77 (787)
+.++..|+|+| |.... ++++|+++|++||.|.+|.| .++ .++|||||.|.+.++|.+|++.
T Consensus 12 ~~~s~~l~l~N-----l~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 12 MRHERVVIIKN-----MFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCSCCEEEEES-----SCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCceEEEEEc-----CCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHH
Confidence 34677799999 73322 36899999999999999965 443 4899999999999999999999
Q ss_pred hccCccCCceEEEEEccC
Q psy3345 78 FNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 78 ~~~~~~~~~~i~v~~~~~ 95 (787)
||+..|+||.|.|.++.+
T Consensus 84 lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp STTCEETTEECEEEECCS
T ss_pred cCCCEECCcEEEEEEeCC
Confidence 999999999999999987
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=1.8e-12 Score=112.92 Aligned_cols=87 Identities=8% Similarity=0.070 Sum_probs=71.6
Q ss_pred CCCCcccceEEEecCcccCC-----CccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 6 SGPVVPRNHISLLDLDEVEF-----IYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~l-----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
+.|++|+..|.|+|+--..- =+.-.++||++.|++||.|.+|.|..+ .++|+|||.|.+.++|.+|++.|||
T Consensus 1 ~~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 1 GVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp -CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35788999999999211111 023346789999999999999999765 2599999999999999999999999
Q ss_pred CccCCceEEEEEccC
Q psy3345 81 TYVFSSRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~~~i~v~~~~~ 95 (787)
..++||.|.|.++.+
T Consensus 78 ~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 78 RWFAGKMITAAYVPL 92 (114)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCEEEEEEEEcH
Confidence 999999999999975
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=104.98 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=63.4
Q ss_pred cceEEEecCcccC--CCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEE
Q psy3345 12 RNHISLLDLDEVE--FIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89 (787)
Q Consensus 12 ~~~~~~~~l~~~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~ 89 (787)
..+|.|.-..-.+ -+..+|+++|+++|+.||.|.+|.|+ ++++|||||.|.+.++|..|++.+++ +.|+.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 4566666510000 12468999999999999999999998 57899999999999999999998554 6799999
Q ss_pred EEEccC
Q psy3345 90 VEKCSN 95 (787)
Q Consensus 90 v~~~~~ 95 (787)
|.++++
T Consensus 84 V~~a~~ 89 (100)
T 2d9o_A 84 ISWLEG 89 (100)
T ss_dssp EECSSC
T ss_pred EEEccC
Confidence 999986
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=5.2e-12 Score=124.55 Aligned_cols=76 Identities=9% Similarity=0.172 Sum_probs=69.3
Q ss_pred ccceEEEecCcccCCCccC---------CHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccC
Q psy3345 11 PRNHISLLDLDEVEFIYKI---------TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT 81 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~ 81 (787)
+...|+|.| ||+.+ ||++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|+.|++.||+.
T Consensus 133 ~~rtLfVgn-----L~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 133 KNKTLYVGG-----IDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCEEEEEC-----TTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCceeecCC-----CChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 456788888 99998 89999999999999999999864 899999999999999999999999
Q ss_pred cc------------CCceEEEEEccCC
Q psy3345 82 YV------------FSSRIKVEKCSNL 96 (787)
Q Consensus 82 ~~------------~~~~i~v~~~~~~ 96 (787)
.| .|+.|.|.+|++.
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EEeccccccccccCCCCEEEEEEccCC
Confidence 99 8999999999973
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.1e-11 Score=106.14 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCCCEEEEecC--Ccc--------CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCe
Q psy3345 683 QTGSKILVRNI--PFQ--------AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST 752 (787)
Q Consensus 683 ~~~~~l~V~nL--p~~--------~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~ 752 (787)
.++++|.|+|+ |.+ -.++||++.|++||.|.+|.|+++. ++|+|||+|.+.++|.+|++.|| |+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-----~~G~~fV~f~~~e~A~~Ai~~ln-G~ 78 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-----AQGNVYVKCPSIAAAIAAVNALH-GR 78 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-----TTCCEEEECSSHHHHHHHHHHHT-TC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-----CcEEEEEEECCHHHHHHHHHHhC-CC
Confidence 46889999999 222 1246899999999999999997762 58999999999999999999997 79
Q ss_pred eecCceEEEEEcccc
Q psy3345 753 HLYGRRLVLEWAEEA 767 (787)
Q Consensus 753 ~~~Gr~l~v~~A~~~ 767 (787)
.+.||.|.|+|+.+.
T Consensus 79 ~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 79 WFAGKMITAAYVPLP 93 (114)
T ss_dssp EETTEECEEEEECHH
T ss_pred EECCEEEEEEEEcHH
Confidence 999999999999743
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.6e-11 Score=101.91 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=58.2
Q ss_pred ccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEccccc
Q psy3345 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768 (787)
Q Consensus 695 ~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~~ 768 (787)
..+|+++|+++|++||.|.+|+|+. +++|||||+|.+.++|..|+..++ .+.|++|+|+||++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~~~---~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS------KKPGTAVVEFATVKAAELAVQNEV---GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES------SSSSEEEEEESCHHHHHHHHHTCC---BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc------CCCCEEEEEECCHHHHHHHHHhcC---CCCCCeEEEEEccCCC
Confidence 5689999999999999999999974 379999999999999999999853 4689999999998665
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=1.2e-10 Score=121.25 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=67.4
Q ss_pred cCCCCCEEEEec--CCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeec---
Q psy3345 681 AKQTGSKILVRN--IPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY--- 755 (787)
Q Consensus 681 ~~~~~~~l~V~n--Lp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~--- 755 (787)
...++.+|||.| |++.+|+++|+++|++||.|.+|.++. +||||||+|.+.++|++|++.|| |..+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~ln-G~~~~~~~ 85 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYSFARYRTTEESKRAYVTLN-GKEVVDDL 85 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-------TCSEEEEEESSHHHHHHHHHHTT-TCEEECTT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhC-CCcccccc
Confidence 356889999999 588999999999999999999998854 37999999999999999999998 57663
Q ss_pred Cc--eEEEEEcc
Q psy3345 756 GR--RLVLEWAE 765 (787)
Q Consensus 756 Gr--~l~v~~A~ 765 (787)
|+ .|.|.|++
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 55 68999996
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.5e-10 Score=97.50 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=79.0
Q ss_pred cCCCCCEEEEecCCcc-CcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecC-HHHHHHHHHHhc-CCeeecCc
Q psy3345 681 AKQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT-KNEAKRAMKALC-QSTHLYGR 757 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~-~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~-~~~A~~Al~~l~-~~~~~~Gr 757 (787)
...+++.|+|.||+.. ++.++|+++|+.||.|.+|.+.++. ..|||.|.+ +.+|..|+..|| ++..+.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3467899999999999 9999999999999999999998873 269999999 899999999995 36899999
Q ss_pred eEEEEEccccccHHHHHHHH
Q psy3345 758 RLVLEWAEEADNVEDIRKRT 777 (787)
Q Consensus 758 ~l~v~~A~~~~~~~~~~~~~ 777 (787)
.+.++....+++.+.|++..
T Consensus 87 ~~~~evL~GeeE~~yw~Ki~ 106 (121)
T 1owx_A 87 EVTWEVLEGEVEKEALKKII 106 (121)
T ss_dssp SEEEEECCHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHH
Confidence 99999999888877776543
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.06 E-value=2e-10 Score=119.58 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=67.8
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCcc--
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV-- 83 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~-- 83 (787)
..+..|+.+|+|.| .||++.+||++|+++|++||.|.+|.|.. +||||||+|.+.+||++|++.|||..+
T Consensus 12 ~~~~~ps~~l~VgN---~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 12 ETVSYATQSLVVAN---GGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CCCSSCCSEEEEET---CSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred eecCCCCCEEEEEc---CCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 34567889999987 44689999999999999999999987753 479999999999999999999999977
Q ss_pred -CCc--eEEEEEcc
Q psy3345 84 -FSS--RIKVEKCS 94 (787)
Q Consensus 84 -~~~--~i~v~~~~ 94 (787)
.|+ .|.|.++.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 356 45666664
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=8.9e-10 Score=89.03 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCCCEEEEecCCc----cCcH----HHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCee
Q psy3345 682 KQTGSKILVRNIPF----QAKQ----SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH 753 (787)
Q Consensus 682 ~~~~~~l~V~nLp~----~~t~----~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~ 753 (787)
.+|..+|+|..+|. ++-+ .+|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ || |..
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---------~fVtF~d~~sAlaAi~-mn-G~~ 72 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---------MWVTFLEGSSALNVLS-LN-GKE 72 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---------EEEEESSHHHHHHGGG-GT-TCE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---------EEEEECChHHHHHHHh-cC-CeE
Confidence 45778899988873 3333 6799999999999999998872 8999999999999999 97 799
Q ss_pred ecCceEEEEEcccc
Q psy3345 754 LYGRRLVLEWAEEA 767 (787)
Q Consensus 754 ~~Gr~l~v~~A~~~ 767 (787)
++||.|+|++|.|+
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999999875
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=3.8e-09 Score=91.63 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=73.0
Q ss_pred CCCCCCCCcccceEEEecCcccCCCcc-CCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecC-HHHHHHHHHHhc
Q psy3345 2 FNHLSGPVVPRNHISLLDLDEVEFIYK-ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHR-EDQAQAALDYFN 79 (787)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~-~~~a~~a~~~~~ 79 (787)
++|.|.+-++..-|.|.| ||+. +|+++|+++|+.||.|..|.|+.+. -.|||.|.+ +++|..|++.+|
T Consensus 8 ~~~~~~~~~~G~il~v~~-----l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 8 HHHGSLEEKIGCLLKFSG-----DLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp -CCCCCSCCCCCEEEEEE-----SCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTT
T ss_pred cccCcccccCCeEEEEec-----CCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhh
Confidence 466777777888889999 9999 9999999999999999999998873 269999999 799999999995
Q ss_pred --cCccCCceEEEEEcc
Q psy3345 80 --NTYVFSSRIKVEKCS 94 (787)
Q Consensus 80 --~~~~~~~~i~v~~~~ 94 (787)
+..|+|..+.++...
T Consensus 78 ~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 78 NGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp TSCBCTTSSSEEEEECC
T ss_pred cCCcEEeCcEEEEEECC
Confidence 779999999998775
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=8.5e-09 Score=102.42 Aligned_cols=90 Identities=11% Similarity=0.189 Sum_probs=75.6
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCC-----CCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTE-----GKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~-----g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
.+...++..+.+.++-.......-.++||++.|++||.|.+|.|+.+.. |+++|++||.|.+.++|.+|++.|||
T Consensus 118 ~~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g 197 (222)
T 3dxb_A 118 AGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 197 (222)
T ss_dssp CCSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC
Confidence 3445556667777755445555667889999999999999999997653 38999999999999999999999999
Q ss_pred CccCCceEEEEEccC
Q psy3345 81 TYVFSSRIKVEKCSN 95 (787)
Q Consensus 81 ~~~~~~~i~v~~~~~ 95 (787)
..++||.|.|.++..
T Consensus 198 r~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 198 RWFAGRKVVAEVYDQ 212 (222)
T ss_dssp CBSSSSBCEEEECCH
T ss_pred ceECCeEEEEEEcCH
Confidence 999999999999864
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.1e-08 Score=82.76 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=61.0
Q ss_pred ccceEEEecCcccCCC----ccCCH----HHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 11 PRNHISLLDLDEVEFI----YKITQ----EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
|...|.|.. +| .+.-. .+|.+.|+.||.|..|+|+.++ +||+|.+.++|.+||+ |||..
T Consensus 6 pd~tv~V~~-----~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 6 SGGTVLVSI-----KSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp SSCEEEEEE-----ECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCeEEEEe-----ccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeE
Confidence 345566666 55 23333 6799999999999999999873 8999999999999999 89999
Q ss_pred cCCceEEEEEccC
Q psy3345 83 VFSSRIKVEKCSN 95 (787)
Q Consensus 83 ~~~~~i~v~~~~~ 95 (787)
+.||.|+|..+++
T Consensus 73 v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 73 LLNRTITIALKSP 85 (91)
T ss_dssp ETTEEEEEEECCC
T ss_pred eCCeEEEEEeCCC
Confidence 9999999999986
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.8e-08 Score=80.64 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=64.3
Q ss_pred cCCCCCEEEEecCCcc-----CcH----HHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCC
Q psy3345 681 AKQTGSKILVRNIPFQ-----AKQ----SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS 751 (787)
Q Consensus 681 ~~~~~~~l~V~nLp~~-----~t~----~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~ 751 (787)
..+|..+|+|..++.. +-+ .+|.+.|+.||.|..+++..+. +||+|.+.++|.+||. || |
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---------~fVtF~d~~sAl~AI~-ld-G 79 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---------MLVTFADSHSALSVLD-VD-G 79 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---------EEEECSCSHHHHHHHH-GG-G
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---------EEEEEcChHHHHHHHh-cC-C
Confidence 3568889999998743 322 5699999999999999998882 9999999999999998 97 7
Q ss_pred eeecCceEEEEEccc
Q psy3345 752 THLYGRRLVLEWAEE 766 (787)
Q Consensus 752 ~~~~Gr~l~v~~A~~ 766 (787)
..++||.|+|++..+
T Consensus 80 ~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 80 MKVKGRAVKISGPSS 94 (95)
T ss_dssp SEETTEEEEEECCCC
T ss_pred eeeCCeEEEEeccCC
Confidence 999999999998654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=3.9e-08 Score=97.59 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=61.8
Q ss_pred CcHHHHHHHHHhcCCeeEEEecccc---CCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcccc
Q psy3345 697 AKQSEVEELFKAFGELKFVRLPKKM---VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767 (787)
Q Consensus 697 ~t~~dL~~~F~~~G~I~~v~i~~~~---~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~~~ 767 (787)
-.+++|++.|++||.|.++.|+++. ..+|+++|++||+|.+.++|.+|++.|| |+.+.||.|.++|+..+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~-gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-GRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT-TCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc-CceECCeEEEEEEcCHH
Confidence 3568899999999999999998664 1345899999999999999999999997 79999999999998743
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=9e-08 Score=77.66 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=60.4
Q ss_pred cccceEEEecCcccCCCcc-----CCH----HHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhcc
Q psy3345 10 VPRNHISLLDLDEVEFIYK-----ITQ----EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNN 80 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~ 80 (787)
.|...|.|.. ++.+ .-. .+|.+.|+.||+|..|+|+.++ +||+|.+.++|.+||+ |||
T Consensus 13 PpD~Tv~V~~-----~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 13 PLDATVVVNL-----QSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CTTCEEEEEE-----SSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGG
T ss_pred CCCCeEEEEe-----cCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCC
Confidence 4566788888 7632 222 5689999999999999999883 9999999999999999 899
Q ss_pred CccCCceEEEEEc
Q psy3345 81 TYVFSSRIKVEKC 93 (787)
Q Consensus 81 ~~~~~~~i~v~~~ 93 (787)
..+.||.|.|..-
T Consensus 80 ~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 80 MKVKGRAVKISGP 92 (95)
T ss_dssp SEETTEEEEEECC
T ss_pred eeeCCeEEEEecc
Confidence 9999999999754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=3e-06 Score=69.86 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhccC-----CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEe
Q psy3345 446 SKRIILVKNLPYRTLPTDLKALFEPF-----GDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518 (787)
Q Consensus 446 ~~~~i~v~nlp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 518 (787)
..++|-+-|||..+++..|+.+..++ |.+..+.+.++.+-|+|+|.+...|.+|.-.|+|..|.|++|.+.-.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 46889999999999999999999999 99999999999999999999999999999999999999999998744
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=1e-05 Score=66.76 Aligned_cols=86 Identities=10% Similarity=0.138 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCccCcHHHHHHHHHhc-----CCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCc
Q psy3345 683 QTGSKILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757 (787)
Q Consensus 683 ~~~~~l~V~nLp~~~t~~dL~~~F~~~-----G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr 757 (787)
...++|-+.|||..+++..|+.+..+| |.|..+.+..+. |-|+|+|.+...|-+|...|+ |..|.||
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-------~GAivef~d~~~AgKasLaL~-G~ef~gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-------NGAIIIFRDSKFAAKMLMILN-GSQFQGK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-------TEEEEECSCHHHHHHHHHHHS-SEEETTE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-------CceEEEEccchhhHHHHhhcC-CeeecCe
Confidence 347889999999999999999999999 999999998883 449999999999999999997 7999999
Q ss_pred eEEEEEccccccHHHHHHHHhhhcc
Q psy3345 758 RLVLEWAEEADNVEDIRKRTNRYFG 782 (787)
Q Consensus 758 ~l~v~~A~~~~~~~~~~~~~~~~~~ 782 (787)
+|++.- +.+|++-.+++++
T Consensus 91 ~Lr~gT------v~eL~~~~~~~~~ 109 (117)
T 2l9w_A 91 VIRSGT------INDMKRYYNNQQN 109 (117)
T ss_dssp EEEEEC------HHHHHHHHHHHHC
T ss_pred EEEecC------HHHHHhccccccc
Confidence 999864 4466655555543
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=3.3e-05 Score=63.46 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCC-----CCc-ceeecccceEEEeecChHhHHHHHhcCCcccCCeeEEEeec
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPL-----PLA-SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKY 292 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~-----g~v-~i~i~~~g~afV~F~~~~~A~~Al~~~~~~l~g~~i~v~~~ 292 (787)
....+|.|.|||..+.++.|.-+|..- |.+ .+.... +-|+|+|.+.+.|++.|+.....|.+..|.|.++
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 456899999999999999999999872 455 555556 8999999999999999998788899999999753
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=0.00027 Score=58.08 Aligned_cols=88 Identities=26% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEecCCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q psy3345 335 ESGRIFVRNLSYTVTEDDLTKLFEKY-----GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409 (787)
Q Consensus 335 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 409 (787)
...+|.|.|||..+.++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|++.++ .....|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 45689999999999999999999862 6888887643 369999999999999996 346789999999
Q ss_pred EeeCCCCCCCCCCCCCccccccccccchhhhhhhcCCCCEEEEeCCCCCCC
Q psy3345 410 LIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460 (787)
Q Consensus 410 v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~v~nlp~~~t 460 (787)
|.+..+. ...++++++||..++
T Consensus 78 V~P~~~~-----------------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR-----------------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC-----------------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC-----------------------------CcceEeeecCCCCCC
Confidence 9887654 346688888887764
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.00032 Score=58.02 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=64.7
Q ss_pred CCEEEEecCCccC-c----HHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceE
Q psy3345 685 GSKILVRNIPFQA-K----QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759 (787)
Q Consensus 685 ~~~l~V~nLp~~~-t----~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l 759 (787)
.++|+|.||+.++ + .+.++++|..|+.+......+.+ | =..|.|.++++|.+|-..|+ ++.++|++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------R-Rirv~F~~~~~A~~AR~~Lh-~~~f~g~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------K-RVRINFSNPLSAADARLRLH-KTEFLGKEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------T-EEEEECSSTTHHHHHHHTST-TSEETTEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------e-EEEEEeCChHHHHHHHHHhc-cceecCcee
Confidence 4689999998876 2 25689999999999888877764 2 26899999999999999996 799999999
Q ss_pred EEEEccccc
Q psy3345 760 VLEWAEEAD 768 (787)
Q Consensus 760 ~v~~A~~~~ 768 (787)
+|-||++.+
T Consensus 77 r~YFgq~~~ 85 (104)
T 1wey_A 77 KLYFAQTLH 85 (104)
T ss_dssp EEECCCCSS
T ss_pred EEEecCCCC
Confidence 999998554
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.00076 Score=55.75 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCCC-C----HHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeeEEEEEec
Q psy3345 447 KRIILVKNLPYRT-L----PTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAP 519 (787)
Q Consensus 447 ~~~i~v~nlp~~~-t----~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 519 (787)
.++|+|.||+.++ . .+.++++|..|+++......++=.-..|.|.++++|.+|-..|++..+.|..++|-++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4789999998765 2 25778999999999998888888889999999999999999999999999999999986
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.24 E-value=0.0011 Score=53.96 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=55.8
Q ss_pred ceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC---CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 13 NHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT---EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 13 ~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
.+|.||. ||+++||+++.+.++.+..+.-..++..+ .-....-|||.|.+.+++..-.+.+||..|.
T Consensus 2 ~KvVIRr-----LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRR-----LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEE-----ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeC-----CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999 99999999999999999877666665543 1234578999999999999999999998653
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.15 E-value=0.0014 Score=55.83 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=62.4
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCC
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (787)
+.......-|.|-| .|... -..|..+|+.||.|.+.... ....+-.|+|.+..+|++||.+ ||..|.|
T Consensus 18 ~~~~~~~~wVtVFG-----Fp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 18 SEDHLDDTWVTVFG-----FPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp ---CGGGGEEEEEC-----CCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCCCCCCEEEEEC-----CCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 34455567788888 99886 67788999999999988762 2357999999999999999999 9999985
Q ss_pred -ceEEEEEcc
Q psy3345 86 -SRIKVEKCS 94 (787)
Q Consensus 86 -~~i~v~~~~ 94 (787)
-.|-|.++.
T Consensus 86 ~~mIGV~p~~ 95 (119)
T 1wwh_A 86 SIMIGVKPCI 95 (119)
T ss_dssp TEECEEEECC
T ss_pred CEEEEEEECC
Confidence 678898875
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.01 E-value=0.0019 Score=52.29 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=49.8
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCcceeecccceEEEeecChHhHHHHHh
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALN 276 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~~~g~afV~F~~~~~A~~Al~ 276 (787)
.-.++++| +.|......||.++|++||-+.|+.+....|||.|.+++.|..|+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 34578888 9999999999999999999888888888999999999999999998
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.83 E-value=0.0046 Score=50.30 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=55.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecCCCCCC--cceEEEEEEcCHHHHHHHHHHhCCceeC
Q psy3345 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK--TKGFALVTFLMPEHATQAYQHLDGTVFL 404 (787)
Q Consensus 337 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~ 404 (787)
.+|.|++||+.+|++++.+.++....+.....+..+.+.. .-.-|||.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999988776666655443322 3356999999999999999999998774
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.63 E-value=0.0066 Score=49.18 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc
Q psy3345 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79 (787)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~ 79 (787)
..|...+.+|++.+ +|......||.++|+.||. ..|+-+-| .-|||.|.+++.|..|++.+.
T Consensus 9 ~d~~p~r~HVf~l~-----FP~ewKt~DI~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 9 PDLQPKRDHVLHVT-----FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SCCCCCCCSEEEEE-----CCTTCCHHHHHHHHTTTCS-CCCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEEe-----CChhhhhHHHHHHhhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 45666788888889 9999999999999999984 34555544 489999999999999999753
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.60 E-value=0.0016 Score=53.00 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=48.2
Q ss_pred cceEEEeCCCCCCCHHhHHHhhcCCCCcceeecccceEEEeecChHhHHHHHh
Q psy3345 224 YHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALN 276 (787)
Q Consensus 224 ~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~~~g~afV~F~~~~~A~~Al~ 276 (787)
.++++| +.|......||.++|++||-+.|+.+....|||.|.+++.|..|+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 467778 9999999999999999999778888888999999999999999998
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.43 E-value=0.0083 Score=51.12 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC-eeEEEEEe
Q psy3345 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKE-VPLYLEWA 518 (787)
Q Consensus 445 ~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~a~V~F~~~~~A~~A~~~l~~~~~~g-~~l~v~~~ 518 (787)
...+-|.|-+.|... ...|...|+.||.|.+...+..+....|+|.++.+|++|+. .||..+.| ..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 346789999999874 67889999999999998887788899999999999999998 59999874 55666654
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.36 E-value=0.0022 Score=55.37 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=58.0
Q ss_pred cceEEEecCcccCCCccCCHHHHHHHhhccCceEE-EEEEec------------C-CC-CcceEEEEEecCHHHHHHHHH
Q psy3345 12 RNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTD-VQLKYT------------T-EG-KFRRFAFIGYHREDQAQAALD 76 (787)
Q Consensus 12 ~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~------------~-~g-~~~g~afv~f~~~~~a~~a~~ 76 (787)
.+-|.|-| .|.+.+ ..+-++|+.||.|.+ +..... + -+ ....+..|+|.++.+|.+||.
T Consensus 7 e~~VtVFG-----Fp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~ 80 (132)
T 3p3d_A 7 ELAILVFG-----YPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL 80 (132)
T ss_dssp -CEEEEEC-----CCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT
T ss_pred ceEEEEEe-----cCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH
Confidence 45577888 886554 567789999998755 322210 0 00 135788999999999999999
Q ss_pred HhccCccCCceEEEEEccC
Q psy3345 77 YFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 77 ~~~~~~~~~~~i~v~~~~~ 95 (787)
+ ||..|.|..|-|.++++
T Consensus 81 ~-NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 81 E-NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp T-TTCEETTEECEEEECCH
T ss_pred h-CCeEeCcEEEEEEECCH
Confidence 9 99999999999999975
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.05 E-value=0.01 Score=48.32 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=47.3
Q ss_pred cccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc
Q psy3345 10 VPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79 (787)
Q Consensus 10 ~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~ 79 (787)
.++.+|+..+ +|......||.++|+.||. ..|.-+-| .-|||.|.+++.|..|++.+.
T Consensus 3 ~~R~HV~~l~-----FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 3 LGSDHVLHVT-----FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp SEEEEEEEEE-----CCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCCCeEEEEe-----CChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 4566777778 9999999999999999983 33444444 489999999999999999753
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.86 E-value=0.0064 Score=49.67 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred ccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecC---CCCcceEEEEEecCHHHHHHHHHHhccCccC
Q psy3345 11 PRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTT---EGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84 (787)
Q Consensus 11 ~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (787)
-+-+|.||. ||+++||+++.+.++.+=.++-..++.-+ ......-|||.|.+.+|.....+.++|..|.
T Consensus 8 ~~~KvVIRr-----LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRR-----LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEEC-----CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeC-----CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 357899999 99999999998888876443222221111 1113367999999999999999999998653
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.77 E-value=0.013 Score=50.65 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=60.9
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeE-EEeccccC-----------CCC-CCceEEEEEecCHHHHHHHHHHhcC
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKF-VRLPKKMV-----------GSG-LHRGFGFVEFITKNEAKRAMKALCQ 750 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~-v~i~~~~~-----------~~g-~~~g~afV~F~~~~~A~~Al~~l~~ 750 (787)
..+.|.|.+.|...+.. |.+.|++||.|.. +.+.+... -.+ ....+..|.|.++.+|.+||+. |
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--N 82 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--N 82 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--T
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--C
Confidence 35679999997776655 7779999999865 22222100 001 1245789999999999999997 5
Q ss_pred CeeecCceEEEEEccccccHHHHHHHHhh
Q psy3345 751 STHLYGRRLVLEWAEEADNVEDIRKRTNR 779 (787)
Q Consensus 751 ~~~~~Gr~l~v~~A~~~~~~~~~~~~~~~ 779 (787)
|..+.|.-|=|.... +..++.|.++...
T Consensus 83 G~ii~G~mIGV~Py~-~~~ve~l~~~~~~ 110 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT-KDAVERLQKRKLT 110 (132)
T ss_dssp TCEETTEECEEEECC-HHHHHHHC-----
T ss_pred CeEeCcEEEEEEECC-HHHHHHHhcCCcc
Confidence 899999988888885 4455555444333
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.32 E-value=0.041 Score=44.94 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=55.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCC--------cEEEEEeCCHHHHHHHHHHhcCCeeCC-----eeE
Q psy3345 447 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG--------ITGLVEFLQKNQAKAAFNSLAYTKFKE-----VPL 513 (787)
Q Consensus 447 ~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------~~a~V~F~~~~~A~~A~~~l~~~~~~g-----~~l 513 (787)
+-.|.|+.||+.+|++++.+.++.+-.+......+.+ .-|||.|.+.++...-...++|..|.+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999888876555433333211 249999999999999999999988763 344
Q ss_pred EEEEec
Q psy3345 514 YLEWAP 519 (787)
Q Consensus 514 ~v~~~~ 519 (787)
.|++||
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566665
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.95 E-value=0.054 Score=58.27 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=44.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHhhccCCCeeEEEecCCCc-EEEEEeCCHHHHHHHHH
Q psy3345 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI-TGLVEFLQKNQAKAAFN 501 (787)
Q Consensus 444 ~~~~~~i~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~a~V~F~~~~~A~~A~~ 501 (787)
....+.|+|. +|..+++.+|.+.|++||.|.++.+..++| +|+|+|.+.+++..++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 3346789998 799999999999999999999999988665 89999999999987754
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.06 E-value=0.082 Score=56.85 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=43.4
Q ss_pred CCCEEEEecCCccCcHHHHHHHHHhcCCeeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHH
Q psy3345 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747 (787)
Q Consensus 684 ~~~~l~V~nLp~~~t~~dL~~~F~~~G~I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~ 747 (787)
..+.|+|. .|..+++.+|.++|++||.|.++.+.++. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~------g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF------GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS------SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC------CeEEEEEeCCHHHHHHHHhc
Confidence 34679997 79999999999999999999999887762 36999999999999977654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.45 E-value=2.6 Score=46.27 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=47.2
Q ss_pred cceEEEeCCCCCCCHHhHHHhhcCCCCcceeecccceEEEeecChHhHHHHHh
Q psy3345 224 YHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALN 276 (787)
Q Consensus 224 ~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~~~g~afV~F~~~~~A~~Al~ 276 (787)
+++++|+ +|..+...+|.+.|+.+|.+.|+.+....|||.|.+.+.|..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHH
Confidence 4577776 999999999999999999889988888899999999999999988
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.08 E-value=3 Score=45.72 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=49.9
Q ss_pred CCCcccceEEEecCcccCCCccCCHHHHHHHhhccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhc
Q psy3345 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79 (787)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~ 79 (787)
.|.+.+.++++.+ +|......||.++|+.||. .+|+-+-+ ..|||.|.++++|..+++.+.
T Consensus 434 d~~~~R~~vl~v~-----f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 434 DLQPKRDHVLHVT-----FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCCCCGGGEEEEE-----CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCcCcEEEEe-----CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 3445677888888 9999999999999999995 45554433 469999999999999999975
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.82 E-value=34 Score=26.66 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=43.8
Q ss_pred CccceEEEeCCCCCCCHHhHHHhhcCCCCcceeecccceEEEeecChHhHHHHHh
Q psy3345 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALN 276 (787)
Q Consensus 222 ~~~~~v~v~nLp~~~te~di~~~F~~~g~v~i~i~~~g~afV~F~~~~~A~~Al~ 276 (787)
..++.|.|-|+|.++-..++.-....+|-.-..-.-.|.|.+.|.+.++-+.|++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiq 64 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQ 64 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHH
Confidence 3578999999999999999887777776542111146899999999999999998
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=59.54 E-value=15 Score=33.25 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEEecCcccCCCcc---------CCHHHHHHHh--hccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCc
Q psy3345 15 ISLLDLDEVEFIYK---------ITQEQLKAKF--EEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY 82 (787)
Q Consensus 15 ~~~~~l~~~~lp~~---------~~~~~l~~~f--~~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (787)
++|-| +|.. .+..+|++.| ++|.+ ..|+.++.+.| .+|+|.|.|.+.-..-+--.+|++.+
T Consensus 15 gIl~N-----~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p-~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fek~F 86 (172)
T 4e8u_A 15 GIVVN-----IPTTKAQDGRSAGESGSKLRDEYILRGFNP-TRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFDKAY 86 (172)
T ss_dssp EEEEC-----CCCEECTTSCEECCCSHHHHHHHHHTTCCC-SEEEEEECSSB-EEEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEEe-----ccccccCCCCccCCCHHHHHHHHHhcCCCC-ceeEecccCCC-CceeEEEEecCChHHHHHHHHHHHHH
Confidence 56666 7762 3457999977 99987 56888888765 78999999998665544444445554
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.21 E-value=24 Score=26.96 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=41.4
Q ss_pred cCCHHHHHHHhhccC-----ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEcc
Q psy3345 28 KITQEQLKAKFEEKG-----TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCS 94 (787)
Q Consensus 28 ~~~~~~l~~~f~~~g-----~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 94 (787)
.++..+|..++..-+ .|-.+.|.- .|.||.-.. +.|..+++.|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 455578888877654 355666643 389999877 67999999999999999999998775
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.74 E-value=1.1e+02 Score=23.85 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=47.8
Q ss_pred CCCCeEEecCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy3345 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVL 647 (787)
Q Consensus 578 ~~~~~l~V~NLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~~~~~s~G~afV~F~~~e~A~~A~~~l 647 (787)
...+-|.|-|+|..+-..++.-.....|---.|.... |-|.+.|.+.++-.-|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid-------------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------------CeeEEEecCChHHHHHHHHH
Confidence 4568899999999999888888888888766666552 67999999999999999986
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.31 E-value=46 Score=30.07 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=37.2
Q ss_pred ceEEEeCCCCC---------CCHHhHHHhh--cCCCCcceeec-----ccceEEEeecChHhH-HHHHh
Q psy3345 225 HTIVVKNLPAG---------VKKKDLKAYF--KPLPLASVRTT-----FLGMAYIGFKDEKNC-NKALN 276 (787)
Q Consensus 225 ~~v~v~nLp~~---------~te~di~~~F--~~~g~v~i~i~-----~~g~afV~F~~~~~A-~~Al~ 276 (787)
-++.|.|+|.. ....+|.+.| +.|.++.++.+ .+|.|.|+|.+.-.- ..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 35778888862 3346899977 99988877766 568999999885543 33444
No 408
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.80 E-value=1.1e+02 Score=24.64 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=45.1
Q ss_pred CCccCCHHHHHHHhh-ccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHHhccCccCCceEEEEEccC
Q psy3345 25 FIYKITQEQLKAKFE-EKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSN 95 (787)
Q Consensus 25 lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 95 (787)
+|-.++-+||..... -||.-.+++.. ...+.|-..+.+|-.+||+.||... ..+-++|....+
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~-------n~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~ 87 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT-------NNELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVIN 87 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC-------SSSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEEC
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe-------cceEEEeccCHHHHHHHHHHHccCC-cccceEEEEecC
Confidence 677888899886555 56875565555 2378999999999999999999873 333345555554
No 409
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=25.70 E-value=50 Score=36.18 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=36.5
Q ss_pred HHHHHhh--ccCceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHH
Q psy3345 33 QLKAKFE--EKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77 (787)
Q Consensus 33 ~l~~~f~--~~g~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 77 (787)
+|+.+|. .+|.|+.+.|-..+.......+++.|.+.++|..|+..
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 263 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDA 263 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHH
Confidence 5678884 68999999998877777777889999999998775544
No 410
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.90 E-value=76 Score=24.02 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=38.7
Q ss_pred ccCcHHHHHHHHHhcCC-----eeEEEeccccCCCCCCceEEEEEecCHHHHHHHHHHhcCCeeecCceEEEEEcc
Q psy3345 695 FQAKQSEVEELFKAFGE-----LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765 (787)
Q Consensus 695 ~~~t~~dL~~~F~~~G~-----I~~v~i~~~~~~~g~~~g~afV~F~~~~~A~~Al~~l~~~~~~~Gr~l~v~~A~ 765 (787)
..++..+|..++..-+. |-.++|..+ |.||+-.. ..|..++..|+ +..+.|+++.|+.|+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~---------~s~v~v~~-~~~~~~~~~l~-~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN---------ASYVEILN-GKGPHVLKVMK-NTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS---------CEEEEECT-TCHHHHHHHHT-TCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC---------cEEEEECH-HHHHHHHHHhc-cccCcCceEEEEECC
Confidence 34566777777765443 445666443 78999877 45888999997 588999999998875
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.58 E-value=1.7e+02 Score=23.04 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCccCCHHHHHHHhhcc-C-ceEEEEEEecCCCCcceEEEEEecCHHHHHHHHHH
Q psy3345 25 FIYKITQEQLKAKFEEK-G-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDY 77 (787)
Q Consensus 25 lp~~~~~~~l~~~f~~~-g-~i~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 77 (787)
....++..+|++.+..+ | .|..|..+..++| .--|||++....+|.....+
T Consensus 30 Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHHHh
Confidence 66789999999888875 5 6888888887654 34699999999888775544
No 412
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=20.65 E-value=61 Score=23.61 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.7
Q ss_pred EEEEEecCCCCcceEEEEEecC
Q psy3345 46 DVQLKYTTEGKFRRFAFIGYHR 67 (787)
Q Consensus 46 ~~~~~~~~~g~~~g~afv~f~~ 67 (787)
.+.+++++...+.|+|+|.|.+
T Consensus 21 ~arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhhccCCCcCceEEEEEec
Confidence 5788898888899999999998
Done!