Your job contains 1 sequence.
>psy3345
MFNHLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRF
AFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHN
IAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLSNKDGEEKEEENEDES
NNQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKD
LKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY
SGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY
GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEG
NVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP
PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEE
EGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRH
FKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELK
RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK
MVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRY
FGTAVGL
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3345
(787 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036018 - symbol:CG3335 species:7227 "Drosophila m... 536 2.6e-151 4
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 549 1.4e-141 5
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 585 3.0e-140 5
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 535 1.2e-139 5
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 554 1.5e-138 5
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 536 1.9e-138 5
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 543 3.4e-137 5
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 549 9.2e-111 3
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 495 1.3e-110 4
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 453 7.5e-110 4
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 400 1.1e-92 4
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 367 2.0e-88 5
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 394 5.0e-82 4
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 365 8.9e-78 4
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 384 4.3e-73 4
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 395 2.6e-72 4
TAIR|locus:4515103541 - symbol:AT5G08695 species:3702 "Ar... 209 9.5e-54 5
RGD|1308928 - symbol:Rbm19 "RNA binding motif protein 19"... 261 2.7e-33 3
UNIPROTKB|H0YIL2 - symbol:RBM19 "Probable RNA-binding pro... 265 6.6e-22 1
POMBASE|SPBC4F6.14 - symbol:SPBC4F6.14 "RNA-binding prote... 227 5.3e-20 4
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 189 1.4e-18 3
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 190 1.1e-17 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 197 4.7e-16 2
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 183 4.4e-15 2
UNIPROTKB|D4A5K7 - symbol:Rbm28 "RNA binding motif protei... 196 3.3e-14 2
RGD|1311336 - symbol:Rbm28 "RNA binding motif protein 28"... 196 3.9e-14 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 167 3.9e-14 3
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 173 4.6e-14 3
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 174 5.2e-14 2
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 197 6.3e-14 2
TAIR|locus:2166359 - symbol:AT5G05720 species:3702 "Arabi... 155 6.5e-14 3
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 171 7.6e-14 2
UNIPROTKB|Q9NW13 - symbol:RBM28 "RNA-binding protein 28" ... 190 1.0e-13 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 158 1.1e-13 2
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 213 1.1e-13 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 179 1.5e-13 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 170 1.5e-13 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 170 2.1e-13 3
CGD|CAL0002736 - symbol:NOP4 species:5476 "Candida albica... 158 4.0e-13 2
UNIPROTKB|Q59KZ0 - symbol:NOP4 "Putative uncharacterized ... 158 4.0e-13 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 159 7.5e-13 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 170 8.8e-13 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 169 8.9e-13 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 201 1.1e-12 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 168 1.1e-12 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 168 1.2e-12 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 166 1.9e-12 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 159 2.3e-12 3
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 165 2.6e-12 2
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 153 2.9e-12 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 166 3.1e-12 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 166 3.1e-12 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 164 3.1e-12 2
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 161 3.5e-12 3
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 164 3.6e-12 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 160 4.6e-12 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 164 5.1e-12 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 164 5.1e-12 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 164 5.1e-12 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 164 5.1e-12 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 164 5.4e-12 2
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 193 5.9e-12 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 164 6.5e-12 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 129 8.4e-12 3
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 165 9.2e-12 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 164 9.6e-12 3
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 168 1.0e-11 2
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 136 1.1e-11 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 156 1.3e-11 3
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 164 1.3e-11 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 143 1.5e-11 3
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 154 1.9e-11 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 153 3.1e-11 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 146 3.5e-11 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 142 5.0e-11 2
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 131 5.4e-11 3
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 145 7.4e-11 3
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 145 7.5e-11 3
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 145 7.7e-11 3
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 177 7.7e-11 3
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 177 7.7e-11 3
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 142 8.6e-11 2
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 123 8.7e-11 3
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 151 1.1e-10 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 142 1.1e-10 3
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 154 1.2e-10 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 152 1.3e-10 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 149 1.4e-10 3
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 146 1.8e-10 3
SGD|S000005964 - symbol:NOP4 "Nucleolar protein" species:... 124 2.1e-10 2
DICTYBASE|DDB_G0270156 - symbol:DDB_G0270156 "RNA-binding... 142 2.3e-10 2
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 128 2.3e-10 3
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 164 2.3e-10 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 150 2.4e-10 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 145 2.9e-10 3
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 122 3.0e-10 3
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 122 3.0e-10 3
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 122 3.0e-10 3
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 146 3.3e-10 2
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 123 3.6e-10 4
WARNING: Descriptions of 841 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 536 (193.7 bits), Expect = 2.6e-151, Sum P(4) = 2.6e-151
Identities = 104/206 (50%), Positives = 151/206 (73%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+TTL+++NLNF + ++++ +HF+ G I +V +A+++DP++P +F S+GYGF+QF
Sbjct: 678 NTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSV 737
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATT-VKRKSSNVAKQTGSKILVRNIPFQAK 698
ALK LQ + +D + +ELKRS+R L+++ +R+ ++ KQTG+KILVRNIPFQA+
Sbjct: 738 AEHALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQ 797
Query: 699 QSEVEELFKAFGELKFVRLPKKMV-GSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
EV ++FKAFGEL+ +R+PKK G HRGFGFV++++K EAKRA AL STHLYGR
Sbjct: 798 YREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRAFDALSASTHLYGR 857
Query: 758 RLVLEWAEEADN--VEDIRKRTNRYF 781
RLVLEW+ DN VE++RKRT F
Sbjct: 858 RLVLEWSANDDNQDVEELRKRTAAKF 883
Score = 486 (176.1 bits), Expect = 2.6e-151, Sum P(4) = 2.6e-151
Identities = 107/244 (43%), Positives = 151/244 (61%)
Query: 183 QIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLK 242
++A ISD+EY+K + T+ + P +KA + TI + N+P K++++
Sbjct: 210 KLAEKPISDLEYMK--SLMATTSGEATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVL 267
Query: 243 AYFKPLPLASVR--TTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSA-K 299
+FKPL SVR + G Y+GFK EK+ K + KNKSF KGKQ+ +++ N K
Sbjct: 268 KFFKPLKPYSVRLPSKVHGFCYVGFKTEKDMAKGMLKNKSFIKGKQVFFSDFTEKNKVTK 327
Query: 300 YSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEK 359
S + A+++ AK WK Q+DS+ +DI+ESGRIF RNL+YT TE+DL KLFE+
Sbjct: 328 ASKSGQPLAPAAVDAGNAK-WKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQ 386
Query: 360 YGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENE 419
+GP+ EV LP+DK T K KGF VT++MPEHA +A+ LDGT F GR+LHL+P K E
Sbjct: 387 FGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKN 446
Query: 420 GNVD 423
D
Sbjct: 447 PKED 450
Score = 286 (105.7 bits), Expect = 2.6e-151, Sum P(4) = 2.6e-151
Identities = 59/139 (42%), Positives = 87/139 (62%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
IT+++L+ F +GT+TD+QLKYT +GKFR+F F+GY E++AQ+A+ +F+NT + +SR+
Sbjct: 13 ITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHFDNTCIQTSRV 72
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAY-----QKLHNIAPKQDLKPEHTKDSKPGK---- 139
+VE C+ LG KP+SWSKYA DS +K A K + K K K
Sbjct: 73 RVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKKKKDKVDKVDQI 132
Query: 140 --KSKNDPTFSDFLQLHGK 156
+ K+DP F +FL+ H K
Sbjct: 133 LSRHKDDPEFQEFLEAHDK 151
Score = 245 (91.3 bits), Expect = 2.6e-151, Sum P(4) = 2.6e-151
Identities = 44/90 (48%), Positives = 63/90 (70%)
Query: 434 KLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQK 493
+LDAF++ + RS +IL KNLP T +++ +F FG +GR+++PP G+T L+E+
Sbjct: 538 RLDAFDEPAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLPPSGVTALIEYCDP 597
Query: 494 NQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+A+ AF LAY+KFK PLYLEWAPE VF
Sbjct: 598 LEARQAFKKLAYSKFKNAPLYLEWAPEQVF 627
Score = 164 (62.8 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 85/337 (25%), Positives = 152/337 (45%)
Query: 218 PVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLGM-AYIGFKDEKNCNKAL 275
P KR I+ KNLPA + ++ F P+ + G+ A I + D +A
Sbjct: 545 PAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLPPSGVTALIEYCDPLEARQAF 604
Query: 276 NKNKSFWKGKQLNIY-KYSKDN--SAKYSG--AADDNNNASMENIKAKHWK-------SQ 323
K ++ K K +Y +++ + + SG + E K + +
Sbjct: 605 KK-LAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEAKPEEKPIVNDAKPDE 663
Query: 324 EDS-VQFAEDIAESGR-IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETD---K 376
EDS + A+D E +F+RNL++ ++ + K F G + E+ D E K
Sbjct: 664 EDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFK 723
Query: 377 TKGFALVTFL---MPEHATQAYQ--HLDGT-VFLGRMLHLIPGKPKENEGNVDGKVHCCI 430
+ G+ + F + EHA + Q H+DG V L R ++ K ++N+G
Sbjct: 724 SLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRSDRVL--KTQDNDG---------- 771
Query: 431 SERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG---- 486
++R+L + Q + +K ILV+N+P++ +++ +F+ FG+L + +P TG
Sbjct: 772 AQRRLAS--QKKQTGTK--ILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAH 827
Query: 487 ----LVEFLQKNQAKAAFNSL-AYTKFKEVPLYLEWA 518
V+++ K +AK AF++L A T L LEW+
Sbjct: 828 RGFGFVDYMSKAEAKRAFDALSASTHLYGRRLVLEWS 864
Score = 104 (41.7 bits), Expect = 2.3e-76, Sum P(3) = 2.3e-76
Identities = 34/116 (29%), Positives = 54/116 (46%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E Q+ ++ R LE E + K++ + IL +N+P + SE+ +F FG
Sbjct: 518 ALGETQVVIEMK-RFLEEEGVRLDAFDEPAKKRSNTVILAKNLPAATEISEITPIFSRFG 576
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
+ + LP SG+ +E+ EA++A K L S L LEWA E
Sbjct: 577 PIGRIVLPP----SGVT---ALIEYCDPLEARQAFKKLAYSK-FKNAPLYLEWAPE 624
Score = 93 (37.8 bits), Expect = 2.8e-97, Sum P(4) = 2.8e-97
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR----GFGFVEFITK 738
+ + + +RN+ F+ Q VE+ F+ G + V + K+ G+GF++F
Sbjct: 676 EPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKS 735
Query: 739 NEAKRAMKALCQSTHLYGRRLVLEWAEEADNVED 772
+ A+ A+K L Q TH+ G + L+ ++ +D
Sbjct: 736 SVAEHALKNL-QLTHIDGNPVELKRSDRVLKTQD 768
Score = 91 (37.1 bits), Expect = 8.6e-26, Sum P(2) = 8.6e-26
Identities = 42/193 (21%), Positives = 85/193 (44%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS---MGYGFVQFYTRE 638
T+ I N+ +N+ + + FK P SV + K F + M G ++ +
Sbjct: 251 TIKIHNVPYNTKRQEVLKFFKPLKPY-SVRLPSKVHGFCYVGFKTEKDMAKGMLK---NK 306
Query: 639 SLNQALKVLQNSSLDEHQI-ELKRSNRNLESEATTV-----KRKSSNVAKQT----GSKI 688
S + +V + +++++ + +S + L A K + +++K+ +I
Sbjct: 307 SFIKGKQVFFSDFTEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRI 366
Query: 689 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
RN+ + + ++ +LF+ FG + V LP + + +GFG V ++ A +A L
Sbjct: 367 FFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKI-KGFGTVTYMMPEHALKAFNTL 425
Query: 749 CQSTHLYGRRLVL 761
T +GR L L
Sbjct: 426 -DGTDFHGRLLHL 437
Score = 87 (35.7 bits), Expect = 1.7e-85, Sum P(3) = 1.7e-85
Identities = 47/194 (24%), Positives = 77/194 (39%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I + N+ Y ++ K F+ P + V LP K GF V F + + L
Sbjct: 252 IKIHNVPYNTKRQEVLKFFKPLKPYS-VRLP-----SKVHGFCYVGFKTEKDMAKGM--L 303
Query: 399 DGTVFL-GRMLHL--IPGKPKENEGNVDGK--VHCCIS------ERKLDAFNQVVEARSK 447
F+ G+ + K K + + G+ + + + D+ ++ +
Sbjct: 304 KNKSFIKGKQVFFSDFTEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISES 363
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 501
I +NL Y T DL+ LFE FG + V +P +T G V ++ A AFN
Sbjct: 364 GRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFN 423
Query: 502 SLAYTKFKEVPLYL 515
+L T F L+L
Sbjct: 424 TLDGTDFHGRLLHL 437
Score = 80 (33.2 bits), Expect = 1.9e-80, Sum P(3) = 1.9e-80
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
RI V+ L +TED L ++F G + ++ L + K + F V + E A A +H
Sbjct: 3 RIIVKQLPKHITEDKLRQIFGAQGTITDLQLKYTPD-GKFRQFCFVGYSTEEEAQSAIRH 61
Query: 398 LDGT 401
D T
Sbjct: 62 FDNT 65
Score = 78 (32.5 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 31/136 (22%), Positives = 58/136 (42%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++ +NL + +TE+ +R+ F++ GP+ V + K + G+G V + E +
Sbjct: 366 IFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRK-----IKGFGTVTYMMPEHALK 420
Query: 643 ALKVLQNSSLDEHQIEL-------KRSNRNL-ESEAT-TVKRKSSNVAKQTGSKILVRNI 693
A L + + L K +L E++A+ + K K + K+ K + N
Sbjct: 421 AFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPIGWNT 480
Query: 694 PFQAKQSEVEELFKAF 709
F + E L K F
Sbjct: 481 LFLGANAVAEILAKQF 496
Score = 58 (25.5 bits), Expect = 3.9e-78, Sum P(3) = 3.9e-78
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNT 81
Y T+E L+ FE+ G V +V L K + F + Y + A A + + T
Sbjct: 373 YTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGT 428
Score = 39 (18.8 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 123 PKQDLKPEH---TKDSKPGKK 140
PK++ KPE D+KP ++
Sbjct: 644 PKEEAKPEEKPIVNDAKPDEE 664
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 549 (198.3 bits), Expect = 1.4e-141, Sum P(5) = 1.4e-141
Identities = 110/200 (55%), Positives = 140/200 (70%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF +TE +++ F K G + S T+++KKD G LSMG+GFV++ ES
Sbjct: 718 TLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKD--KAGTLLSMGFGFVEYKKPESAQ 775
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL+ LQ +D H++E+K S R + A RK V KQ SKILVRNIPFQA E
Sbjct: 776 KALRRLQGCIVDGHKLEVKISERAVRP-AVKSSRKKQTVKKQKTSKILVRNIPFQATVRE 834
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF FGELK VRLPKKM G+G HRGFGFV+F+TK +AK+A ALC STHLYGRRLVL
Sbjct: 835 IRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVL 894
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ + VE +R+RT +F
Sbjct: 895 EWADTEETVEALRRRTADHF 914
Score = 352 (129.0 bits), Expect = 1.4e-141, Sum P(5) = 1.4e-141
Identities = 77/224 (34%), Positives = 126/224 (56%)
Query: 200 KSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLA-----SV 253
+++ P++ VS A HT+ ++ P V ++ ++ +F PL PLA +
Sbjct: 272 EAEQETPAEKQKNQVSSAEASTP--HTVKLRGAPLNVTEQKIREFFSPLKPLAIRMGKNT 329
Query: 254 RTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASME 313
+ G ++ K E KAL + K + G+ + + + +N+ K + A ++
Sbjct: 330 QGKSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRC--ENAPKETVTAKTDDQP--- 384
Query: 314 NIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKE 373
W+ + + ED++ESGR+FVRNL +T TE+DL K+F KYGPL+E+ PID+
Sbjct: 385 ------WQRMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRL 438
Query: 374 TDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
T K KGFA +T+++PEHA +AY +DG VF GRM+HL+P K+
Sbjct: 439 TKKPKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKK 482
Score = 263 (97.6 bits), Expect = 1.4e-141, Sum P(5) = 1.4e-141
Identities = 53/89 (59%), Positives = 64/89 (71%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +ILVKNLP T +L+A+F G LGRVL+P GIT +VEFL+
Sbjct: 574 LDSFSQAAGERSKTVILVKNLPATTSTAELEAVFGKHGSLGRVLLPTGGITAIVEFLEPI 633
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+AK AF LAY+KF VPLYLEWAP GVF
Sbjct: 634 EAKQAFTKLAYSKFHSVPLYLEWAPMGVF 662
Score = 262 (97.3 bits), Expect = 1.4e-141, Sum P(5) = 1.4e-141
Identities = 56/133 (42%), Positives = 81/133 (60%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+++ + F GT+TD LK+T +GKFR+F FIGY ED+AQAAL++FN +++ +SR+ V
Sbjct: 15 EDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALNHFNRSFIDTSRVTV 74
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTK-DSKPGKKSKN------ 143
E C + GD +KPK+WSK++ A +K P P TK D K S+N
Sbjct: 75 ELCKSFGDPSKPKAWSKHSQKVPALEKQPE-KPMTIAAPASTKKDKKKKNPSENLKELEE 133
Query: 144 DPTFSDFLQLHGK 156
D TF +FL +H K
Sbjct: 134 DKTFQEFLVVHQK 146
Score = 206 (77.6 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 96/330 (29%), Positives = 145/330 (43%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYF-KPLPLASVRTTFLGM-AYIGFKDEKNCNKALNKN 278
+R I+VKNLPA +L+A F K L V G+ A + F + +A K
Sbjct: 583 ERSKTVILVKNLPATTSTAELEAVFGKHGSLGRVLLPTGGITAIVEFLEPIEAKQAFTK- 641
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN-------------IK-AKHWKSQE 324
++ K + +Y S A N ++E +K ++ +Q+
Sbjct: 642 LAYSKFHSVPLYLEWAPMGVFSSPALQKKNVEALEKEGEERLVPDGDTTVKGSEETSAQD 701
Query: 325 DSVQFAEDIAES--G-RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK----- 376
+ ED ES G +F++NL++T TE L + F K G + I K+ DK
Sbjct: 702 EEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCT--ISKKKDKAGTLL 759
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
+ GF V + PE A +A + L G + G L + K +E V V S RK
Sbjct: 760 SMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEV-----KISERAVRPAVK---SSRK-- 809
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT-----GLVE 489
Q V+ + ILV+N+P++ +++ LF FG+L V +P G G V+
Sbjct: 810 --KQTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVD 867
Query: 490 FLQKNQAKAAFNSLAY-TKFKEVPLYLEWA 518
FL K AK AFN+L + T L LEWA
Sbjct: 868 FLTKQDAKKAFNALCHSTHLYGRRLVLEWA 897
Score = 114 (45.2 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 41/174 (23%), Positives = 77/174 (44%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ N TE IR F P+A + + + KS G F+ FV + +
Sbjct: 296 TVKLRGAPLNVTEQKIREFFSPLKPLA-IRMGKNTQGKSTG-FI-----FVDLKSEAEVQ 348
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKR--------KSSNVAKQTGS---KILV 690
+ALK + + +E+ R N E T K K + ++ S ++ V
Sbjct: 349 KALK-RKKEYIGGQYVEVSRCE-NAPKETVTAKTDDQPWQRMKRDDEEEEDLSESGRLFV 406
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
RN+PF + + ++E++F +G L + P + + +GF F+ ++ A +A
Sbjct: 407 RNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRL-TKKPKGFAFITYMIPEHAVKA 459
Score = 102 (41.0 bits), Expect = 2.2e-81, Sum P(5) = 2.2e-81
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM--VGSGLHRGFGFVEFITKNEAK 742
G + ++N+ F + ++E F G +K + KK G+ L GFGFVE+ A+
Sbjct: 716 GCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQ 775
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEADN--VEDIRKR 776
+A++ L Q + G +L ++ +E A V+ RK+
Sbjct: 776 KALRRL-QGCIVDGHKLEVKISERAVRPAVKSSRKK 810
Score = 88 (36.0 bits), Expect = 1.3e-56, Sum P(4) = 1.3e-56
Identities = 33/114 (28%), Positives = 53/114 (46%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E ++ ++ R L ++ S +++ + ILV+N+P +E+E +F G
Sbjct: 553 ALGETEL-VQEIRRFLIENGVSLDSFSQAAGERSKTVILVKNLPATTSTAELEAVFGKHG 611
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
L V LP G+ VEF+ EAK+A L S + L LEWA
Sbjct: 612 SLGRVLLPT----GGIT---AIVEFLEPIEAKQAFTKLAYSK-FHSVPLYLEWA 657
Score = 84 (34.6 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL F STE+ + + F K GP++ + + K P G+ F+ + E +
Sbjct: 404 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKP-----KGFAFITYMIPEHAVK 458
Query: 643 ALKVLQNSSLDEHQIELKRSN-RNLESEATTVKRKSSNVAKQTGSK 687
A + + L S + L+ E + +SS+ KQ +K
Sbjct: 459 AYAEMDGQVFQGRMMHLLPSTIKKLKIEDIDAE-ESSSYKKQKEAK 503
Score = 84 (34.6 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 29/131 (22%), Positives = 60/131 (45%)
Query: 651 SLDEHQIELKRSN-RNLESEATTVKRKS--SNVAKQTGSKILVRNIPFQAKQSEVEELFK 707
++D H + ++S + E E K+K+ S+ T + +R P + ++ E F
Sbjct: 257 NIDTHTKKRRKSKPQEAEQETPAEKQKNQVSSAEASTPHTVKLRGAPLNVTEQKIREFFS 316
Query: 708 AFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767
L +R+ K G GF FV+ ++ E ++A+K + ++ G+ + + E A
Sbjct: 317 PLKPLA-IRMGKNTQGKST--GFIFVDLKSEAEVQKALKR--KKEYIGGQYVEVSRCENA 371
Query: 768 DNVEDIRKRTN 778
E + +T+
Sbjct: 372 PK-ETVTAKTD 381
Score = 78 (32.5 bits), Expect = 6.2e-87, Sum P(4) = 6.2e-87
Identities = 40/164 (24%), Positives = 68/164 (41%)
Query: 321 KSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD-KTKG 379
+ Q++ V AE + + +R VTE + + F PLA + + K T K+ G
Sbjct: 280 EKQKNQVSSAE-ASTPHTVKLRGAPLNVTEQKIREFFSPLKPLA---IRMGKNTQGKSTG 335
Query: 380 FALVTFLMPEHATQAYQHLDGTVFLGRMLHL--IPGKPKENEGNVDGKVHCCISER-KLD 436
F V +A + + G+ + + PKE V K +R K D
Sbjct: 336 FIFVDLKSEAEVQKALKRKKEYIG-GQYVEVSRCENAPKET---VTAKTDDQPWQRMKRD 391
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 480
+ + S R+ V+NLP+ + DL+ +F +G L + P
Sbjct: 392 DEEEEDLSESGRLF-VRNLPFTSTEEDLEKIFSKYGPLSEIHFP 434
Score = 75 (31.5 bits), Expect = 4.1e-83, Sum P(3) = 4.1e-83
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + ED KLF +G L + L K+ K + F + + + A A H
Sbjct: 3 RLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKD-GKFRKFGFIGYKSEDEAQAALNH 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 73 (30.8 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L A F L ++ T F +IG+K E ALN N
Sbjct: 4 LIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALNHFN 63
Query: 279 KSF 281
+SF
Sbjct: 64 RSF 66
Score = 65 (27.9 bits), Expect = 4.6e-82, Sum P(3) = 4.6e-82
Identities = 19/90 (21%), Positives = 39/90 (43%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T+++++ F + +++ T+GK F F+ E + Q AL Y+ +
Sbjct: 306 VTEQKIREFFSPLKPLA-IRMGKNTQGKSTGFIFVDLKSEAEVQKALKR-KKEYIGGQYV 363
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKL 118
+V +C N PK D +Q++
Sbjct: 364 EVSRCENA-----PKETVTAKTDDQPWQRM 388
Score = 53 (23.7 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 196 KLKTKSKDTAPSDPSVPPV-SKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASV 253
KL+ K + A P+V K V K++ I+V+N+P ++++ F L +V
Sbjct: 790 KLEVKISERAVR-PAVKSSRKKQTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTV 848
Query: 254 RT--------TFLGMAYIGFKDEKNCNKALN 276
R + G ++ F +++ KA N
Sbjct: 849 RLPKKMAGTGSHRGFGFVDFLTKQDAKKAFN 879
Score = 51 (23.0 bits), Expect = 1.4e-141, Sum P(5) = 1.4e-141
Identities = 19/72 (26%), Positives = 27/72 (37%)
Query: 139 KKSKNDPTFSDFLQLHGKDVSKLLPLXXXXXXXXXXXXXXXXXXQIAHADISDMEYLKLK 198
KK K+ P +D+L D S+ L D+SDM+YLK K
Sbjct: 163 KKEKSKPV-ADYLNFDS-DESEDLSEEEKDGRESSEAKKQQEKKAATREDLSDMDYLKSK 220
Query: 199 TKSKDTAPSDPS 210
++ S S
Sbjct: 221 VVKDSSSYSSSS 232
Score = 51 (23.0 bits), Expect = 9.8e-116, Sum P(4) = 9.8e-116
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 67 REDQAQAALDYFNNTYVF-SSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQ 125
RED + +DY + V SS D + + SK DS + + K+
Sbjct: 208 REDLSD--MDYLKSKVVKDSSSYSSSSTEEETDYEEVEEESKNEEDSGITENIDTHTKKR 265
Query: 126 -DLKPEHTKDSKPGKKSKN 143
KP+ + P +K KN
Sbjct: 266 RKSKPQEAEQETPAEKQKN 284
Score = 46 (21.3 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFN 501
++VKNLP + LF FG L + + G + + +++A+AA N
Sbjct: 4 LIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALN 60
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 585 (211.0 bits), Expect = 3.0e-140, Sum P(5) = 3.0e-140
Identities = 111/204 (54%), Positives = 153/204 (75%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+TL+IKNLNF ++E+++++ F KCG + S T+++K+D G+ LSMGYGFVQ+ T E+
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRD--KAGKLLSMGYGFVQYKTPEAA 759
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
+A++ LQ+ ++DEHQ+E+K S R ++S KRK KQT SKILVRNIPFQA
Sbjct: 760 QKAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVK 819
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
E+ ELF FGELK VRLPKK +G G HRGFGF++F+TK +AK+A ALC STHLYGRRLV
Sbjct: 820 ELRELFCTFGELKTVRLPKKGIG-GSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLV 878
Query: 761 LEWAEEADNVEDIRKRTNRYFGTA 784
LEWA+ + V+D+R++T ++F A
Sbjct: 879 LEWADAEETVDDLRRKTAQHFHDA 902
Score = 325 (119.5 bits), Expect = 3.0e-140, Sum P(5) = 3.0e-140
Identities = 83/270 (30%), Positives = 138/270 (51%)
Query: 184 IAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKA 243
+ HAD S E + + K T P+ + P ++ T+ ++ P VK++ +K
Sbjct: 261 VQHAD-SAYESGEKTSSQKSTRPA---IEPTTE--------FTVKLRGAPFNVKEQQVKE 308
Query: 244 YFKPLPLASVRTTF------LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNS 297
+ PL ++R G Y+ + E +AL +K + G+ + +++ + +
Sbjct: 309 FMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANNFKN 368
Query: 298 AKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLF 357
+ S + ME + K E+ ED+AESGR+F+RN+ YT TE+DL +LF
Sbjct: 369 DRRSA-----KRSEMEKNFVRELKDDEEE----EDVAESGRLFIRNMPYTCTEEDLKELF 419
Query: 358 EKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
K+GPL+EV+ PID T K KGFA VT+++PE+A A LDG F GR+LH++ + K+
Sbjct: 420 SKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKK 479
Query: 418 NEGNVDGKVHCCIS-ERKLDAFNQVVEARS 446
+ + S +RK DA ++ S
Sbjct: 480 EKADQGPDAPGSSSYKRKKDAKDKAASGSS 509
Score = 277 (102.6 bits), Expect = 3.0e-140, Sum P(5) = 3.0e-140
Identities = 55/89 (61%), Positives = 65/89 (73%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +ILVKNLP DL+ALF P G LGRVL+PP G+T +VEFL+
Sbjct: 572 LDSFSQASGERSKCVILVKNLPSGVQVADLEALFSPHGSLGRVLLPPSGLTAIVEFLEPT 631
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+AK AF LAYTKF+ VPLYLEWAP VF
Sbjct: 632 EAKRAFMKLAYTKFQHVPLYLEWAPVAVF 660
Score = 232 (86.7 bits), Expect = 3.0e-140, Sum P(5) = 3.0e-140
Identities = 49/131 (37%), Positives = 78/131 (59%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+++ + F + GT+TD LK+T +GKFR+F F+G+ E+ AQ AL +FN ++V +SR+ V
Sbjct: 15 EDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFNKSFVDTSRVTV 74
Query: 91 EKCSNLGDTTKPKSWSKYA--PDS---SAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDP 145
E C++ GD K + WSK+ P S + +K H K+ KP+ + G K D
Sbjct: 75 ELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHEQGEKEKKKPKKILNVL-GDLEK-DE 132
Query: 146 TFSDFLQLHGK 156
+F +FL +H K
Sbjct: 133 SFQEFLAVHQK 143
Score = 219 (82.2 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 88/316 (27%), Positives = 145/316 (45%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLGM-AYIGFKDEKNCNKALNKN 278
+R I+VKNLP+GV+ DL+A F P L V G+ A + F + +A K
Sbjct: 581 ERSKCVILVKNLPSGVQVADLEALFSPHGSLGRVLLPPSGLTAIVEFLEPTEAKRAFMK- 639
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN--IKAKHWKSQEDSVQFAED--IA 334
++ K + + +Y + + +A + E +K +++E+ + ED I
Sbjct: 640 LAYTKFQHVPLYLEWAPVAVFTTPSAPRPEPQTKEKSAVKNDSVQNEEEEEEEEEDDQIL 699
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK-----TKGFALVTFLMPE 389
+F++NL++ +E+ L K F K G + I K+ DK + G+ V + PE
Sbjct: 700 PGSTLFIKNLNFITSEETLQKTFSKCGVVKSCT--ISKKRDKAGKLLSMGYGFVQYKTPE 757
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI 449
A +A + L L + K +E V V ++RK Q ++
Sbjct: 758 AAQKAMRQLQHCTVDEHQLEV-----KISEREVKSGV--AQAKRK----KQTARKQTTSK 806
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFNSL 503
ILV+N+P++ +L+ LF FG+L V +P GI G ++FL K AK AF++L
Sbjct: 807 ILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Query: 504 AY-TKFKEVPLYLEWA 518
+ T L LEWA
Sbjct: 867 CHSTHLYGRRLVLEWA 882
Score = 111 (44.1 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 45/204 (22%), Positives = 87/204 (42%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ FN E ++ P+A + A+ D ++ G Y +V + +
Sbjct: 291 TVKLRGAPFNVKEQQVKEFMMPLKPVA-IRFAKNSDGRNSG------YVYVDLRSEAEVE 343
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS--SNVAKQT-----------GSKI 688
+AL+ L + IE+ R+N N +++ + KR N ++ ++
Sbjct: 344 RALR-LDKDYMGGRYIEVFRAN-NFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRL 401
Query: 689 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+RN+P+ + +++ELF G L V P + + +GF FV ++ A A+ L
Sbjct: 402 FIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSL-TKKPKGFAFVTYMIPENAVSALAQL 460
Query: 749 CQST------HLYGRRLVLEWAEE 766
T H+ RL E A++
Sbjct: 461 DGHTFQGRVLHVMASRLKKEKADQ 484
Score = 99 (39.9 bits), Expect = 4.5e-50, Sum P(4) = 4.5e-50
Identities = 38/117 (32%), Positives = 55/117 (47%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E QI ++ + + L ++ S +++ ILV+N+P + +++E LF G
Sbjct: 551 ALGETQI-VQETRQFLLDNGVSLDSFSQASGERSKCVILVKNLPSGVQVADLEALFSPHG 609
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767
L V LP SGL VEF+ EAKRA L T L LEWA A
Sbjct: 610 SLGRVLLPP----SGLT---AIVEFLEPTEAKRAFMKLAY-TKFQHVPLYLEWAPVA 658
Score = 93 (37.8 bits), Expect = 3.8e-74, Sum P(5) = 3.8e-74
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG--LHRGFGFVEFITKNEAK 742
GS + ++N+ F + +++ F G +K + KK +G L G+GFV++ T A+
Sbjct: 701 GSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQ 760
Query: 743 RAMKALCQST 752
+AM+ L T
Sbjct: 761 KAMRQLQHCT 770
Score = 87 (35.7 bits), Expect = 2.9e-91, Sum P(5) = 2.9e-91
Identities = 41/168 (24%), Positives = 66/168 (39%)
Query: 322 SQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD-KTKGF 380
S + S + A + + +R + V E + + PL V + K +D + G+
Sbjct: 275 SSQKSTRPAIEPTTEFTVKLRGAPFNVKEQQVKEFMM---PLKPVAIRFAKNSDGRNSGY 331
Query: 381 ALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHC---CISERKLDA 437
V L E + LD GR + + +N+ + + E K D
Sbjct: 332 VYVD-LRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDE 390
Query: 438 FNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 485
+ V A S R+ ++N+PY DLK LF G L VL P +T
Sbjct: 391 EEEDV-AESGRLF-IRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLT 436
Score = 82 (33.9 bits), Expect = 1.3e-89, Sum P(3) = 1.3e-89
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + ED K+F +G L + L K+ K + F V F E A +A +H
Sbjct: 3 RLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKD-GKFRKFGFVGFKTEEDAQKALKH 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 82 (33.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L +KNL ED R+ F G + + KD G+F +GFV F T E +
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKD----GKFRK--FGFVGFKTEEDAQK 57
Query: 643 ALKVLQNSSLDEHQIELK 660
ALK S +D ++ ++
Sbjct: 58 ALKHFNKSFVDTSRVTVE 75
Score = 81 (33.6 bits), Expect = 1.6e-89, Sum P(3) = 1.6e-89
Identities = 31/104 (29%), Positives = 48/104 (46%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFN-NTY-- 82
Y T+E LK F + G +++V + K + FAF+ Y + A +AL + +T+
Sbjct: 408 YTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQG 467
Query: 83 ----VFSSRIKVEKCSNLGDTTKPKSWS--KYAPDSSAYQKLHN 120
V +SR+K EK D S+ K A D +A HN
Sbjct: 468 RVLHVMASRLKKEKADQGPDAPGSSSYKRKKDAKDKAASGSSHN 511
Score = 79 (32.9 bits), Expect = 1.6e-92, Sum P(4) = 1.6e-92
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + + A F L +++ T F ++GFK E++ KAL N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 279 KSF 281
KSF
Sbjct: 64 KSF 66
Score = 56 (24.8 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 183 QIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLK 242
Q+ H + D L++K ++ S + K K+ I+V+N+P K+L+
Sbjct: 765 QLQHCTV-DEHQLEVKISEREVK-SGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELR 822
Query: 243 AYF------KP--LPLASVRTTFLGMAYIGFKDEKNCNKALN 276
F K LP + + G +I F +++ KA +
Sbjct: 823 ELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 864
Score = 46 (21.3 bits), Expect = 4.5e-111, Sum P(5) = 4.5e-111
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 305 DDNNNASM--ENIKAKHWKSQEDSVQFAEDIAESG 337
DD+++AS EN + + + +E VQ A+ ESG
Sbjct: 237 DDDSSASAADENEEDEGKEEEESIVQHADSAYESG 271
Score = 41 (19.5 bits), Expect = 4.1e-58, Sum P(2) = 4.1e-58
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
++VKNLP + +F FG L
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTL 28
Score = 37 (18.1 bits), Expect = 3.0e-140, Sum P(5) = 3.0e-140
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 189 ISDMEYLKLKTKSK 202
+SDM+YL+ K K
Sbjct: 216 LSDMDYLRSKMVEK 229
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 535 (193.4 bits), Expect = 1.2e-139, Sum P(5) = 1.2e-139
Identities = 106/200 (53%), Positives = 140/200 (70%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF++TE++++ F K G + S ++++KK+ G LSMG+GFV++ E
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKN--KAGALLSMGFGFVEYKKPEQAQ 793
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+ALK LQ +D H++E++ S R + A T RK KQT SKILVRNIPFQA E
Sbjct: 794 KALKQLQGHVVDGHKLEVRISERATKP-APTATRKKQVARKQTTSKILVRNIPFQADSRE 852
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF FGELK VRLPKKM G+G HRGFGFV+F TK +AKRA ALC STHLYGRRLVL
Sbjct: 853 IRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLVL 912
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ ++ +R++T +F
Sbjct: 913 EWADSEVTLQALRRKTAEHF 932
Score = 365 (133.5 bits), Expect = 1.2e-139, Sum P(5) = 1.2e-139
Identities = 87/227 (38%), Positives = 130/227 (57%)
Query: 209 PSVPP--VSKAPVHKRQY---HTIVVKNLPAGVKKKDLKAYFKPL-PLAS--VRTTF--- 257
P++P V++ P H+R+ HT+ ++ P V +K++ + PL P+A VR
Sbjct: 274 PALPACWVTEKPAHQREPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK 333
Query: 258 LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKA 317
G ++ F E+ KAL N+ + G+ + +++ +AK A N+
Sbjct: 334 TGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAK----APPKNST------- 382
Query: 318 KHWKSQE-DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
K W+ + + ED+A+SGR+FVRNL YT +E+DL KLF KYGPL+E+ PID T K
Sbjct: 383 KAWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKK 442
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD 423
KGFA VTF+ PEHA +AY +DG VF GRMLH++P K+ E + D
Sbjct: 443 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK-EASED 488
Score = 263 (97.6 bits), Expect = 1.2e-139, Sum P(5) = 1.2e-139
Identities = 55/132 (41%), Positives = 80/132 (60%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+E+ + F GT+TD LK+T +GKFR+F FIG+ E++AQ AL++FN +++ +SRI V
Sbjct: 15 EERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFNKSFIDTSRITV 74
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGK------KSKND 144
E C + GD TKP++WSK+A S Q K + PE KD++ K K K D
Sbjct: 75 EFCKSFGDPTKPRAWSKHAQKPS--QSKPPPKDKDSVPPEAKKDNRKKKVAGELEKLKKD 132
Query: 145 PTFSDFLQLHGK 156
F +FL +H K
Sbjct: 133 DEFQEFLSVHQK 144
Score = 253 (94.1 bits), Expect = 1.2e-139, Sum P(5) = 1.2e-139
Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +IL KNLP T +L+ F FG LGRVL+P G+T +VEFL+
Sbjct: 575 LDSFSQAAAERSKTVILAKNLPAGTQAAELQETFGRFGSLGRVLLPEGGVTAIVEFLEAL 634
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+A+ AF LAY+KF VPLYLEWAP GVF
Sbjct: 635 EARKAFRHLAYSKFHHVPLYLEWAPMGVF 663
Score = 172 (65.6 bits), Expect = 2.0e-32, Sum P(4) = 2.0e-32
Identities = 60/215 (27%), Positives = 98/215 (45%)
Query: 321 KSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK---- 376
+ +E+ + E+ +F++NL+++ TE+ L +F K G + I K+ +K
Sbjct: 719 EEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSC--SISKKKNKAGAL 776
Query: 377 -TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKL 435
+ GF V + PE A +A + L G H++ G E + + RK
Sbjct: 777 LSMGFGFVEYKKPEQAQKALKQLQG--------HVVDGHKLEVRISERATKPAPTATRK- 827
Query: 436 DAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT-----GLV 488
QV ++ ILV+N+P++ +++ LF FG+L V +P G G V
Sbjct: 828 ---KQVARKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFV 884
Query: 489 EFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGV 522
+F K AK AFN+L + T L LEWA V
Sbjct: 885 DFFTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV 919
Score = 110 (43.8 bits), Expect = 2.8e-25, Sum P(3) = 2.8e-25
Identities = 40/175 (22%), Positives = 78/175 (44%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ FN TE ++ P+A + + R + G GY FV F + E +
Sbjct: 296 TVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRN----AHGN--KTGYVFVDFSSEEEVK 348
Query: 642 QALK------------VLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL 689
+AL+ V + S+ + K S + + + ++A +G ++
Sbjct: 349 KALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEEEEDLA-DSG-RLF 406
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
VRN+P+ + + ++E+LF +G L + P + + +GF FV F+ A +A
Sbjct: 407 VRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSL-TKKPKGFAFVTFMFPEHAVKA 460
Score = 100 (40.3 bits), Expect = 3.2e-81, Sum P(5) = 3.2e-81
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM--VGSGLHRGFGFVEFITKNEAK 742
G + ++N+ F + ++ +F G +K + KK G+ L GFGFVE+ +A+
Sbjct: 734 GCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQ 793
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEA 767
+A+K L Q + G +L + +E A
Sbjct: 794 KALKQL-QGHVVDGHKLEVRISERA 817
Score = 98 (39.6 bits), Expect = 1.1e-58, Sum P(4) = 1.1e-58
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E Q+ ++ R L ++ S A+++ + IL +N+P + +E++E F FG
Sbjct: 554 ALGETQL-VQEVRRFLLDNGVSLDSFSQAAAERSKTVILAKNLPAGTQAAELQETFGRFG 612
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
L V LP+ V + VEF+ EA++A + L S + L LEWA
Sbjct: 613 SLGRVLLPEGGVTA-------IVEFLEALEARKAFRHLAYSK-FHHVPLYLEWA 658
Score = 83 (34.3 bits), Expect = 3.3e-81, Sum P(3) = 3.3e-81
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L F L S++ T F +IGFK E+ ALN N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 279 KSF 281
KSF
Sbjct: 64 KSF 66
Score = 79 (32.9 bits), Expect = 7.5e-85, Sum P(4) = 7.5e-85
Identities = 39/153 (25%), Positives = 63/153 (41%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK-GFALVTFLMPEHATQAYQ--- 396
+R + VTE ++ E PL V + I + K G+ V F E +A Q
Sbjct: 299 LRGAPFNVTEKNV---MEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCNR 355
Query: 397 -HLDGT---VFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILV 452
++ G VF + + PK + G+ + E + + A S R+ V
Sbjct: 356 EYMGGRYIEVFREKSIPTAKAPPKNSTKAWQGRT---LGEHE----EEEDLADSGRLF-V 407
Query: 453 KNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 485
+NLPY + DL+ LF +G L + P +T
Sbjct: 408 RNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLT 440
Score = 72 (30.4 bits), Expect = 4.7e-80, Sum P(3) = 4.7e-80
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + E+ +LF +G L + L K+ K + F + F E A A H
Sbjct: 3 RLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQTALNH 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 68 (29.0 bits), Expect = 1.1e-83, Sum P(4) = 1.1e-83
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 329 FAEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
F++ AE + I +NL +L + F ++G L V+LP E T A+V FL
Sbjct: 578 FSQAAAERSKTVILAKNLPAGTQAAELQETFGRFGSLGRVLLP---EGGVT---AIVEFL 631
Query: 387 MPEHATQAYQHL 398
A +A++HL
Sbjct: 632 EALEARKAFRHL 643
Score = 65 (27.9 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 743
T + +R PF + V E + +R+ + G+ G+ FV+F ++ E K+
Sbjct: 293 TPHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGN--KTGYVFVDFSSEEEVKK 349
Query: 744 AMKALCQSTHLYGR 757
A++ C ++ GR
Sbjct: 350 ALQ--CNREYMGGR 361
Score = 52 (23.4 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKRQYHT-IVVKNLPAGVKKKDLKAYFKPL-PLASV 253
KL+ + + A + P+ K V ++Q + I+V+N+P ++++ F L +V
Sbjct: 808 KLEVRISERA-TKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIRELFSTFGELKTV 866
Query: 254 RT--------TFLGMAYIGFKDEKNCNKALN 276
R T G ++ F +++ +A N
Sbjct: 867 RLPKKMTGTGTHRGFGFVDFFTKQDAKRAFN 897
Score = 49 (22.3 bits), Expect = 1.0e-81, Sum P(4) = 1.0e-81
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 210 SVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYF 245
S+ S+A +R I+ KNLPAG + +L+ F
Sbjct: 574 SLDSFSQAAA-ERSKTVILAKNLPAGTQAAELQETF 608
Score = 46 (21.3 bits), Expect = 1.2e-139, Sum P(5) = 1.2e-139
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 185 AHADISDMEYLKLKTKSKDTAPSDPS 210
A ++SDM+YL+ K + +++ + S
Sbjct: 204 AQKELSDMDYLRSKVVAAESSEEEES 229
Score = 43 (20.2 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
++VKNLP + LF FG L
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTL 28
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 554 (200.1 bits), Expect = 1.5e-138, Sum P(5) = 1.5e-138
Identities = 111/200 (55%), Positives = 144/200 (72%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF++TE++++ F K G I S T+++KK+ G LSMG+GFV++ E
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN--KAGVLLSMGFGFVEYKKPEQAQ 780
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+ALK LQ ++D H++E++ S R + A T RK KQT SKILVRNIPFQA Q E
Sbjct: 781 KALKQLQGHTVDGHKLEVRISERATKP-ALTSTRKKQVPKKQTTSKILVRNIPFQANQRE 839
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF FGELK VRLPKKM G+G HRGFGFV+FITK +AK+A ALC STHLYGRRLVL
Sbjct: 840 IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 899
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ V+ +R++T R+F
Sbjct: 900 EWADSEVTVQTLRRKTARHF 919
Score = 327 (120.2 bits), Expect = 1.5e-138, Sum P(5) = 1.5e-138
Identities = 82/222 (36%), Positives = 121/222 (54%)
Query: 213 PVS-KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLAS--VRTTF---LGMAYIGF 265
PVS K P +T+ ++ P V +K++ + PL P+A VR G ++
Sbjct: 283 PVSQKEPTTP---YTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDL 339
Query: 266 KDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQED 325
E+ KAL N+ + G+ + +++ + +A+ G + +++E+
Sbjct: 340 SSEEEVKKALKCNRDYMGGRYIEVFREKQAPTAR--GPPKSTTPWQGRTLG----ENEEE 393
Query: 326 SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
ED+A+SGR+FVRNLSYT +E+DL KLF YGPL+E+ PID T K KGFA VTF
Sbjct: 394 -----EDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 448
Query: 386 LMPEHATQAYQHLDGTVFLGRMLHLIPG---KPKENEGNVDG 424
+ PEHA +AY +DG VF GRMLH++P K E N G
Sbjct: 449 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPG 490
Score = 265 (98.3 bits), Expect = 1.5e-138, Sum P(5) = 1.5e-138
Identities = 55/132 (41%), Positives = 82/132 (62%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+E+ + F GT+TD LK+T +GKFR+F FIG+ E++AQAAL++F+ +++ ++RI V
Sbjct: 15 EERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTTRITV 74
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGK------KSKND 144
E C + GD +KP++WSK+A SS ++ P QD P TK K K K K D
Sbjct: 75 EFCKSFGDPSKPRAWSKHAQKSSQPKQ-----PSQDSVPSDTKKDKKKKGPSDLEKLKED 129
Query: 145 PTFSDFLQLHGK 156
F +FL +H K
Sbjct: 130 AKFQEFLSIHQK 141
Score = 259 (96.2 bits), Expect = 1.5e-138, Sum P(5) = 1.5e-138
Identities = 51/89 (57%), Positives = 63/89 (70%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +IL KNLP TL +++ F FG LGRVL+P GIT +VEFL+
Sbjct: 571 LDSFSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPL 630
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+A+ AF LAY+KF VPLYLEWAP GVF
Sbjct: 631 EARKAFRHLAYSKFHHVPLYLEWAPIGVF 659
Score = 195 (73.7 bits), Expect = 4.0e-34, Sum P(4) = 4.0e-34
Identities = 69/233 (29%), Positives = 109/233 (46%)
Query: 306 DNNNASMENIKAKHWKSQEDSVQFAEDIAES--G-RIFVRNLSYTVTEDDLTKLFEKYGP 362
+ AS+E +A K +E+ + E+ ES G +F++NL+++ TE+ L +F K G
Sbjct: 688 EGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGA 747
Query: 363 LAEVILPIDKETDK-----TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+ I K+ +K + GF V + PE A +A + L G H + G E
Sbjct: 748 IKSCT--ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--------HTVDGHKLE 797
Query: 418 NEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRV 477
+ S RK QV + ++ ILV+N+P++ +++ LF FG+L V
Sbjct: 798 VRISERATKPALTSTRK----KQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTV 853
Query: 478 LVPPY--GIT-----GLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGV 522
+P G G V+F+ K AK AFN+L + T L LEWA V
Sbjct: 854 RLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 906
Score = 101 (40.6 bits), Expect = 2.7e-77, Sum P(5) = 2.7e-77
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG--LHRGFGFVEFITKNEAK 742
G + ++N+ F + ++ +F G +K + KK +G L GFGFVE+ +A+
Sbjct: 721 GCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEA 767
+A+K L Q + G +L + +E A
Sbjct: 781 KALKQL-QGHTVDGHKLEVRISERA 804
Score = 99 (39.9 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 40/173 (23%), Positives = 77/173 (44%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ FN TE ++ P+A + + R + G GY FV + E +
Sbjct: 294 TVKLRGAPFNVTEKNVIEFLAPLKPVA-IRIVRN----AHGN--KTGYVFVDLSSEEEVK 346
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLES----EATTV---KRKSSNVAKQT---GSKILVR 691
+ALK + IE+ R + + ++TT + N ++ ++ VR
Sbjct: 347 KALKC-NRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVR 405
Query: 692 NIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
N+ + + + ++E+LF A+G L + P + + +GF FV F+ A +A
Sbjct: 406 NLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-TKKPKGFAFVTFMFPEHAVKA 457
Score = 95 (38.5 bits), Expect = 7.4e-54, Sum P(4) = 7.4e-54
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 677 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736
S A+++ + IL +N+P +E++E F FG L V LP+ G+ VEF+
Sbjct: 575 SQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGIT---AIVEFL 627
Query: 737 TKNEAKRAMKALCQSTHLYGRRLVLEWA 764
EA++A + L S + L LEWA
Sbjct: 628 EPLEARKAFRHLAYSK-FHHVPLYLEWA 654
Score = 79 (32.9 bits), Expect = 1.2e-83, Sum P(3) = 1.2e-83
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L A F L S++ T F +IGFK E+ ALN +
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFH 63
Query: 279 KSF 281
+SF
Sbjct: 64 RSF 66
Score = 76 (31.8 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 667 ESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 726
+ A V++ S T + +R PF + V E + +R+ + G+
Sbjct: 274 QEAAGKVEKPVSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVA-IRIVRNAHGN-- 330
Query: 727 HRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYFGTAVG 786
G+ FV+ ++ E K+A+K C ++ GR + + ++A K T + G +G
Sbjct: 331 KTGYVFVDLSSEEEVKKALK--CNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLG 388
Score = 75 (31.5 bits), Expect = 1.3e-86, Sum P(4) = 1.3e-86
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 329 FAEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
F++ AE + I +NL ++ + F ++G L V+LP E T A+V FL
Sbjct: 574 FSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGIT---AIVEFL 627
Query: 387 MPEHATQAYQHL 398
P A +A++HL
Sbjct: 628 EPLEARKAFRHL 639
Score = 71 (30.1 bits), Expect = 8.5e-83, Sum P(3) = 8.5e-83
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + E+ +LF +G L + L K+ K + F + F E A A H
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALNH 61
Score = 60 (26.2 bits), Expect = 4.8e-85, Sum P(4) = 4.8e-85
Identities = 39/156 (25%), Positives = 62/156 (39%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK-GFALVTFLMPEHATQAYQ--- 396
+R + VTE ++ E PL V + I + K G+ V E +A +
Sbjct: 297 LRGAPFNVTEKNV---IEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNR 353
Query: 397 -HLDGT---VFLGRMLHLIPGKPKEN---EGNVDGKVHCCISERKLDAFNQVVEARSKRI 449
++ G VF + G PK +G G+ +E + D A S R+
Sbjct: 354 DYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGE-----NEEEEDL------ADSGRL 402
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 485
V+NL Y + DL+ LF +G L + P +T
Sbjct: 403 F-VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT 437
Score = 58 (25.5 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKRQYHT-IVVKNLPAGVKKKDLKAYFKPL-PLASV 253
KL+ + + A + P++ K V K+Q + I+V+N+P +++++ F L +V
Sbjct: 795 KLEVRISERA-TKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTV 853
Query: 254 RT--------TFLGMAYIGFKDEKNCNKALN 276
R G ++ F +++ KA N
Sbjct: 854 RLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884
Score = 47 (21.6 bits), Expect = 4.0e-55, Sum P(2) = 4.0e-55
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFN 501
++VKNLP + LF FG L + + G + F + +A+AA N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALN 60
Score = 43 (20.2 bits), Expect = 1.5e-138, Sum P(5) = 1.5e-138
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 188 DISDMEYLKLKTKSKDTAPSD 208
++SDM+YLK K + + D
Sbjct: 207 ELSDMDYLKSKMVRAEVSSED 227
Score = 43 (20.2 bits), Expect = 2.9e-83, Sum P(4) = 2.9e-83
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYF 245
+R I+ KNLPAG +++ F
Sbjct: 580 ERSKTVILAKNLPAGTLAAEIQETF 604
Score = 37 (18.1 bits), Expect = 9.7e-112, Sum P(4) = 9.7e-112
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 198 KTKSKDTAPSDPSVPPVSKAP 218
K S+D+ PSD K P
Sbjct: 100 KQPSQDSVPSDTKKDKKKKGP 120
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 536 (193.7 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 106/200 (53%), Positives = 141/200 (70%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF++TE+ ++ F K G + S ++++KK+ G LSMG+GFV++ E
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKN--KAGVLLSMGFGFVEYRKPEQAQ 788
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+ALK LQ +D H++E++ S R + A T+ RK KQT SKILVRNIPFQA E
Sbjct: 789 KALKQLQGHVVDGHKLEVRISERATKP-AVTLARKKQVPRKQTTSKILVRNIPFQAHSRE 847
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF FGELK VRLPKKM G+G HRGFGFV+F+TK +AKRA ALC STHLYGRRLVL
Sbjct: 848 IRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ ++ +R++T +F
Sbjct: 908 EWADSEVTLQALRRKTAAHF 927
Score = 359 (131.4 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 90/255 (35%), Positives = 142/255 (55%)
Query: 206 PSDPSVPPVSKA----PVHKRQ---YHTIVVKNLPAGVKKKDLKAYFKPL-PLAS--VRT 255
P+ PP ++A P ++++ HT+ ++ P V +K++ + PL P+A VR
Sbjct: 268 PAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN 327
Query: 256 TF---LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASM 312
G ++ F +E+ +AL N+ + G+ + +++ + N GA + +
Sbjct: 328 AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFR--EKNVPTTKGAPKNTTKSWQ 385
Query: 313 ENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDK 372
I ++ +E+ ED+AESGR+FVRNL YT TE+DL KLF KYGPL+E+ PID
Sbjct: 386 GRILGEN---EEE-----EDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDS 437
Query: 373 ETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCIS- 431
T K KGFA +TF+ PEHA +AY +DG VF GRMLH++P K+ E + D S
Sbjct: 438 LTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKK-EASEDASALGSSSY 496
Query: 432 ERKLDAFNQVVEARS 446
++K +A ++ A S
Sbjct: 497 KKKKEAQDKANSASS 511
Score = 262 (97.3 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 53/89 (59%), Positives = 63/89 (70%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +ILVKNLP TL L+ F FG LGRVL+P GIT +VEFL+
Sbjct: 574 LDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPL 633
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+A+ AF LAY+KF VPLYLEWAP GVF
Sbjct: 634 EARKAFRHLAYSKFHHVPLYLEWAPVGVF 662
Score = 251 (93.4 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 53/130 (40%), Positives = 76/130 (58%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+E+ + F GT+TD LK+T +GKFR+F FIG+ E++AQ A +FN +++ +SRI V
Sbjct: 15 EERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRITV 74
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGK------KSKND 144
E C + GD KP++WSK+A S ++ PK PE KD K K K K D
Sbjct: 75 EFCKSFGDPAKPRAWSKHAQKPSQPKQ----PPKDSTTPEIKKDEKKKKVAGQLEKLKED 130
Query: 145 PTFSDFLQLH 154
F +FL +H
Sbjct: 131 TEFQEFLSVH 140
Score = 185 (70.2 bits), Expect = 6.6e-32, Sum P(4) = 6.6e-32
Identities = 67/232 (28%), Positives = 109/232 (46%)
Query: 305 DDN-NNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL 363
D+N +N AK + +E+ + E+ +F++NL++ TE+ L ++F K G +
Sbjct: 698 DENPTEEGADNSSAK-MEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTV 756
Query: 364 AEVILPIDKETDK-----TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
I K+ +K + GF V + PE A +A + L G V G L + + +
Sbjct: 757 KSC--SISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEV-----RIS 809
Query: 419 EGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
E V ++ +K QV ++ ILV+N+P++ +++ LF FG+L V
Sbjct: 810 ERATKPAV--TLARKK-----QVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVR 862
Query: 479 VPPY--GIT-----GLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGV 522
+P G G V+FL K AK AFN+L + T L LEWA V
Sbjct: 863 LPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV 914
Score = 111 (44.1 bits), Expect = 6.3e-81, Sum P(5) = 6.3e-81
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 653 DEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGEL 712
DE+ E N + + E + + + G + ++N+ F + +++E+F G +
Sbjct: 698 DENPTEEGADNSSAKMEEEEEEEEEEEESLP-GCTLFIKNLNFDTTEEKLKEVFSKVGTV 756
Query: 713 KFVRLPKKMVGSG--LHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEA 767
K + KK +G L GFGFVE+ +A++A+K L Q + G +L + +E A
Sbjct: 757 KSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQL-QGHVVDGHKLEVRISERA 812
Score = 109 (43.4 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 43/175 (24%), Positives = 77/175 (44%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ FN TE ++ P+A + + R + G GY FV F E +
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRN----AHGN--KTGYIFVDFSNEEEVK 347
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKR--KS-------SNVAKQT---GSKIL 689
QALK + IE+ R +N+ + K KS N ++ ++
Sbjct: 348 QALKC-NREYMGGRYIEVFRE-KNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLF 405
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
VRN+P+ + + ++E+LF +G L + P + + +GF F+ F+ A +A
Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSL-TKKPKGFAFITFMFPEHAVKA 459
Score = 96 (38.9 bits), Expect = 3.9e-56, Sum P(4) = 3.9e-56
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E Q+ ++ R L ++ S A+++ + ILV+N+P ++++E F FG
Sbjct: 553 ALGETQL-VQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFG 611
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
L V LP+ G+ VEF+ EA++A + L S + L LEWA
Sbjct: 612 SLGRVLLPE----GGIT---AIVEFLEPLEARKAFRHLAYSK-FHHVPLYLEWA 657
Score = 90 (36.7 bits), Expect = 1.8e-84, Sum P(4) = 1.8e-84
Identities = 41/153 (26%), Positives = 65/153 (42%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK-GFALVTFLMPEHATQAY---- 395
+R + VTE ++ E PL V + I + K G+ V F E QA
Sbjct: 298 LRGAPFNVTEKNV---MEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 396 QHLDGT---VFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILV 452
+++ G VF + + G PK + G++ +E + D A S R+ V
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRI-LGENEEEEDL------AESGRLF-V 406
Query: 453 KNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 485
+NLPY + DL+ LF +G L + P +T
Sbjct: 407 RNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLT 439
Score = 81 (33.6 bits), Expect = 4.4e-82, Sum P(3) = 4.4e-82
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L A F L S++ T F +IGFK E+ KA N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 279 KSF 281
KSF
Sbjct: 64 KSF 66
Score = 81 (33.6 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL + STE+ + + F K GP++ + K P G+ F+ F E
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKP-----KGFAFITFMFPE---H 455
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGS 686
A+K S +D + R L +T+K+++S A GS
Sbjct: 456 AVKAY--SEVDGQVFQ----GRMLHVLPSTIKKEASEDASALGS 493
Score = 75 (31.5 bits), Expect = 1.9e-81, Sum P(3) = 1.9e-81
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + E+ +LF +G L + L K+ K + F + F E A +A +H
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKH 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 74 (31.1 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 329 FAEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
F++ AE + I V+NL L + F +G L V+LP E T A+V FL
Sbjct: 577 FSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLP---EGGIT---AIVEFL 630
Query: 387 MPEHATQAYQHL 398
P A +A++HL
Sbjct: 631 EPLEARKAFRHL 642
Score = 74 (31.1 bits), Expect = 7.6e-20, Sum P(3) = 7.6e-20
Identities = 34/152 (22%), Positives = 62/152 (40%)
Query: 638 ESLNQALKVLQN-SSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK-ILVRNIPF 695
E + A VLQ S Q + + + EA K +N + T + +R PF
Sbjct: 244 EEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLRGAPF 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
+ V E + +R+ + G+ G+ FV+F + E K+A+K C ++
Sbjct: 304 NVTEKNVMEFLAPLKPVA-IRIVRNAHGN--KTGYIFVDFSNEEEVKQALK--CNREYMG 358
Query: 756 GRRLVLEWAEEADNVEDIRKRTNRYF-GTAVG 786
GR + + + + K T + + G +G
Sbjct: 359 GRYIEVFREKNVPTTKGAPKNTTKSWQGRILG 390
Score = 68 (29.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L +KNL E+ R+ F G + ++ KD G+F +GF+ F + E +
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD----GKFRK--FGFIGFKSEEEAQK 57
Query: 643 ALKVLQNSSLDEHQIELK 660
A K S +D +I ++
Sbjct: 58 AQKHFNKSFIDTSRITVE 75
Score = 57 (25.1 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 21/91 (23%), Positives = 43/91 (47%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKRQYHT-IVVKNLPAGVKKKDLKAYFKPL-PLASV 253
KL+ + + A + P+V K V ++Q + I+V+N+P ++++ F L +V
Sbjct: 803 KLEVRISERA-TKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTV 861
Query: 254 RT--------TFLGMAYIGFKDEKNCNKALN 276
R T G ++ F +++ +A N
Sbjct: 862 RLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892
Score = 48 (22.0 bits), Expect = 4.4e-80, Sum P(4) = 4.4e-80
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 210 SVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYF 245
S+ S+A +R I+VKNLPAG L+ F
Sbjct: 573 SLDSFSQAAA-ERSKTVILVKNLPAGTLAAQLQETF 607
Score = 43 (20.2 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
++VKNLP + LF FG L
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTL 28
Score = 42 (19.8 bits), Expect = 1.9e-138, Sum P(5) = 1.9e-138
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 188 DISDMEYLKLK-TKSKDTAPSD 208
++SDM+YLK K K+ ++ S+
Sbjct: 204 ELSDMDYLKSKMVKAGSSSSSE 225
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 543 (196.2 bits), Expect = 3.4e-137, Sum P(5) = 3.4e-137
Identities = 106/200 (53%), Positives = 146/200 (73%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF++TE++++ F K G + S ++++KK+ G+ LSMG+GFV++ E
Sbjct: 731 TLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKN--KAGELLSMGFGFVEYRKPEQAQ 788
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+ALK LQ +D H++E++ S R + A T RK KQT SKILVRNIPFQA + E
Sbjct: 789 KALKQLQGHVVDSHKLEVRISERATKP-ALTSTRKKQVPRKQTTSKILVRNIPFQADKRE 847
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++ELF FGELK VRLPKKM G+G HRGFGFV+F+TK +AKRA +ALC STHLYGRRLVL
Sbjct: 848 IQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVL 907
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ +++ +R++T +F
Sbjct: 908 EWADSEVSLQALRRKTAEHF 927
Score = 343 (125.8 bits), Expect = 3.4e-137, Sum P(5) = 3.4e-137
Identities = 84/233 (36%), Positives = 130/233 (55%)
Query: 205 APSDPSVPPVSKAPVHK--RQY-----HTIVVKNLPAGVKKKDLKAYFKPL-PLAS--VR 254
APS+ +P ++A K Q +T+ ++ P V +K++ + PL P+A VR
Sbjct: 270 APSENEIPGAARAEADKLANQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVR 329
Query: 255 TTF---LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNAS 311
G ++ F+ E+ +AL N+ + G+ + I++ + K
Sbjct: 330 NAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTK----------GP 379
Query: 312 MENIKAKHWKSQE-DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPI 370
++N AK W+ + + ED+A+SGR+F+RNL YT TE+DL +LF K+GPL+E+ PI
Sbjct: 380 LKN-SAKPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPI 438
Query: 371 DKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD 423
D T K KGFA VTF+ PEHA +AY +DG VF GRMLH++P K+ E + D
Sbjct: 439 DSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKK-EASED 490
Score = 259 (96.2 bits), Expect = 3.4e-137, Sum P(5) = 3.4e-137
Identities = 52/89 (58%), Positives = 63/89 (70%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +ILVKNLP TL +L+ F FG LGRVL+P GIT +VEFL+
Sbjct: 576 LDSFSQAAAERSKTVILVKNLPAGTLVAELQETFGRFGSLGRVLLPEGGITAIVEFLEPL 635
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+A+ AF LAY+KF PLYLEWAP GVF
Sbjct: 636 EARKAFRHLAYSKFHHTPLYLEWAPVGVF 664
Score = 251 (93.4 bits), Expect = 3.4e-137, Sum P(5) = 3.4e-137
Identities = 51/130 (39%), Positives = 79/130 (60%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+++ + F GT+TD LK+T +GKFR+F FIG+ E++A +AL++FN +++ +SRI V
Sbjct: 15 EDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFNRSFIDTSRITV 74
Query: 91 EKCSNLGDTTKPKSWSKYAP---DSSAYQKLHNIAPKQDLKPEHTKD-SKPGKKSKNDPT 146
E C + GD TKP++WSK+A S K + P + K + TK + +K K D
Sbjct: 75 EFCKSFGDPTKPRAWSKHAQKTKQSKNPSKDKDFVPTEPKKDDKTKKVASELEKLKEDTE 134
Query: 147 FSDFLQLHGK 156
F +FL H K
Sbjct: 135 FQEFLSAHQK 144
Score = 165 (63.1 bits), Expect = 6.2e-30, Sum P(4) = 6.2e-30
Identities = 63/223 (28%), Positives = 101/223 (45%)
Query: 313 ENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDK 372
E+ AK + +E+ + E + +F++NL+++ TE+ L +F K G + I K
Sbjct: 707 EDCPAKVEEEEEEEEEEEESLPGC-TLFIKNLNFSTTEETLKGVFSKAGMVKSC--SISK 763
Query: 373 ETDK-----TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVH 427
+ +K + GF V + PE A +A + L G H++ E +
Sbjct: 764 KKNKAGELLSMGFGFVEYRKPEQAQKALKQLQG--------HVVDSHKLEVRISERATKP 815
Query: 428 CCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT 485
S RK QV ++ ILV+N+P++ +++ LF FG+L V +P G
Sbjct: 816 ALTSTRK----KQVPRKQTTSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTG 871
Query: 486 -----GLVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGV 522
G V+FL K AK AF +L + T L LEWA V
Sbjct: 872 THRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWADSEV 914
Score = 120 (47.3 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 51/212 (24%), Positives = 91/212 (42%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ FN TE ++ P+A + + R + G GY FV F + E +
Sbjct: 298 TVKLRGAPFNVTEKNVLEFLAPLRPVA-IRIVRN----AHGN--KTGYIFVDFRSEEEIK 350
Query: 642 QALK------------VLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL 689
QALK + + ++ + LK S + + + ++A +G ++
Sbjct: 351 QALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQGRTLGENEEEEDLA-DSG-RLF 408
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
+RN+P+ + + +++ LF FG L + P + + +GF FV FI A RA A
Sbjct: 409 IRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSL-TKKPKGFAFVTFIFPEHAVRAY-AEV 466
Query: 750 QSTHLYGRRL-VLEWAEEADNVEDIRKRTNRY 780
GR L VL + + ED + + Y
Sbjct: 467 DGQVFQGRMLHVLPSTIKKEASEDTDTQGSSY 498
Score = 101 (40.6 bits), Expect = 9.8e-55, Sum P(4) = 9.8e-55
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E Q+ ++ R L ++ S A+++ + ILV+N+P +E++E F FG
Sbjct: 555 ALGETQL-VQEVRRFLLDNGVSLDSFSQAAAERSKTVILVKNLPAGTLVAELQETFGRFG 613
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
L V LP+ G+ VEF+ EA++A + L S + L LEWA
Sbjct: 614 SLGRVLLPE----GGIT---AIVEFLEPLEARKAFRHLAYSK-FHHTPLYLEWA 659
Score = 92 (37.4 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 28/132 (21%), Positives = 58/132 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I+NL + STE+ ++R F K GP++ + K P F + + F + R
Sbjct: 407 LFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEV 466
Query: 643 ALKVLQNSSLDEHQIELKR-SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+V Q L +K+ ++ + +++ ++ K+K + K S N F +
Sbjct: 467 DGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKDKANSSSSHNWNTLFMGPNAV 526
Query: 702 VEELFKAFGELK 713
+ + + + K
Sbjct: 527 ADAIAQKYNATK 538
Score = 91 (37.1 bits), Expect = 1.5e-76, Sum P(5) = 1.5e-76
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG--LHRGFGFVEFITKNEAK 742
G + ++N+ F + ++ +F G +K + KK +G L GFGFVE+ +A+
Sbjct: 729 GCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQ 788
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEA 767
+A+K L Q + +L + +E A
Sbjct: 789 KALKQL-QGHVVDSHKLEVRISERA 812
Score = 82 (33.9 bits), Expect = 1.3e-82, Sum P(3) = 1.3e-82
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L A F L S++ T F +IGFK E+ ALN N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 279 KSF 281
+SF
Sbjct: 64 RSF 66
Score = 80 (33.2 bits), Expect = 3.5e-84, Sum P(4) = 3.5e-84
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 329 FAEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
F++ AE + I V+NL +L + F ++G L V+LP E T A+V FL
Sbjct: 579 FSQAAAERSKTVILVKNLPAGTLVAELQETFGRFGSLGRVLLP---EGGIT---AIVEFL 632
Query: 387 MPEHATQAYQHLDGTVFLGRMLHL 410
P A +A++HL + F L+L
Sbjct: 633 EPLEARKAFRHLAYSKFHHTPLYL 656
Score = 80 (33.2 bits), Expect = 3.5e-84, Sum P(4) = 3.5e-84
Identities = 40/184 (21%), Positives = 69/184 (37%)
Query: 304 ADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL 363
A A EN +++ D + ++ + +R + VTE ++ E PL
Sbjct: 264 AGPEQGAPSENEIPGAARAEADKLANQKEPTTPYTVKLRGAPFNVTEKNV---LEFLAPL 320
Query: 364 AEVILPIDKETDKTK-GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP-KENEGN 421
V + I + K G+ V F E QA + + GR + + K +G
Sbjct: 321 RPVAIRIVRNAHGNKTGYIFVDFRSEEEIKQALK-CNREYMGGRYIEIFREKNVPTTKGP 379
Query: 422 VDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP 481
+ R L + + + ++NLPY + DL+ LF FG L + P
Sbjct: 380 LKNSAKPW-QGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPI 438
Query: 482 YGIT 485
+T
Sbjct: 439 DSLT 442
Score = 78 (32.5 bits), Expect = 3.4e-82, Sum P(3) = 3.4e-82
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + ED +LF +G L + L K+ K + F + F E A A H
Sbjct: 3 RLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEALSALNH 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 54 (24.1 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 20/89 (22%), Positives = 43/89 (48%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKRQYHT-IVVKNLPAGVKKKDLKAYFKPL-PLASV 253
KL+ + + A + P++ K V ++Q + I+V+N+P K++++ F L +V
Sbjct: 803 KLEVRISERA-TKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQELFSTFGELKTV 861
Query: 254 RT--------TFLGMAYIGFKDEKNCNKA 274
R T G ++ F +++ +A
Sbjct: 862 RLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 49 (22.3 bits), Expect = 6.1e-81, Sum P(4) = 6.1e-81
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 210 SVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYF 245
S+ S+A +R I+VKNLPAG +L+ F
Sbjct: 575 SLDSFSQAAA-ERSKTVILVKNLPAGTLVAELQETF 609
Score = 46 (21.3 bits), Expect = 5.7e-113, Sum P(4) = 5.7e-113
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 82 YVFSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKS 141
Y+ S +K E S+L + +S A ++ AP Q + + + G S
Sbjct: 213 YLKSKMVKSESLSSLEEEESEDEAVSCGEESGAEEEAPGAAPTQQDRGKPVAGPEQGAPS 272
Query: 142 KND 144
+N+
Sbjct: 273 ENE 275
Score = 43 (20.2 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
++VKNLP + LF FG L
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTL 28
Score = 42 (19.8 bits), Expect = 3.4e-137, Sum P(5) = 3.4e-137
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 188 DISDMEYLKLKTKSKDTAPS 207
++SDM+YLK K ++ S
Sbjct: 207 ELSDMDYLKSKMVKSESLSS 226
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 549 (198.3 bits), Expect = 9.2e-111, Sum P(3) = 9.2e-111
Identities = 110/200 (55%), Positives = 140/200 (70%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF +TE +++ F K G + S T+++KKD G LSMG+GFV++ ES
Sbjct: 394 TLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKD--KAGTLLSMGFGFVEYKKPESAQ 451
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL+ LQ +D H++E+K S R + A RK V KQ SKILVRNIPFQA E
Sbjct: 452 KALRRLQGCIVDGHKLEVKISERAVRP-AVKSSRKKQTVKKQKTSKILVRNIPFQATVRE 510
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF FGELK VRLPKKM G+G HRGFGFV+F+TK +AK+A ALC STHLYGRRLVL
Sbjct: 511 IRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVL 570
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ + VE +R+RT +F
Sbjct: 571 EWADTEETVEALRRRTADHF 590
Score = 316 (116.3 bits), Expect = 9.2e-111, Sum P(3) = 9.2e-111
Identities = 63/159 (39%), Positives = 97/159 (61%)
Query: 259 GMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
G ++ K E KAL + K + G+ + + + +N+ K + A ++
Sbjct: 11 GFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRC--ENAPKETVTAKTDDQP-------- 60
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
W+ + + ED++ESGR+FVRNL +T TE+DL K+F KYGPL+E+ PID+ T K K
Sbjct: 61 -WQRMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPK 119
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
GFA +T+++PEHA +AY +DG VF GRM+HL+P K+
Sbjct: 120 GFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKK 158
Score = 263 (97.6 bits), Expect = 9.2e-111, Sum P(3) = 9.2e-111
Identities = 53/89 (59%), Positives = 64/89 (71%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q RSK +ILVKNLP T +L+A+F G LGRVL+P GIT +VEFL+
Sbjct: 250 LDSFSQAAGERSKTVILVKNLPATTSTAELEAVFGKHGSLGRVLLPTGGITAIVEFLEPI 309
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+AK AF LAY+KF VPLYLEWAP GVF
Sbjct: 310 EAKQAFTKLAYSKFHSVPLYLEWAPMGVF 338
Score = 206 (77.6 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 96/330 (29%), Positives = 145/330 (43%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYF-KPLPLASVRTTFLGM-AYIGFKDEKNCNKALNKN 278
+R I+VKNLPA +L+A F K L V G+ A + F + +A K
Sbjct: 259 ERSKTVILVKNLPATTSTAELEAVFGKHGSLGRVLLPTGGITAIVEFLEPIEAKQAFTK- 317
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN-------------IK-AKHWKSQE 324
++ K + +Y S A N ++E +K ++ +Q+
Sbjct: 318 LAYSKFHSVPLYLEWAPMGVFSSPALQKKNVEALEKEGEERLVPDGDTTVKGSEETSAQD 377
Query: 325 DSVQFAEDIAES--G-RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK----- 376
+ ED ES G +F++NL++T TE L + F K G + I K+ DK
Sbjct: 378 EEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCT--ISKKKDKAGTLL 435
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLD 436
+ GF V + PE A +A + L G + G L + K +E V V S RK
Sbjct: 436 SMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEV-----KISERAVRPAVK---SSRK-- 485
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--GIT-----GLVE 489
Q V+ + ILV+N+P++ +++ LF FG+L V +P G G V+
Sbjct: 486 --KQTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVD 543
Query: 490 FLQKNQAKAAFNSLAY-TKFKEVPLYLEWA 518
FL K AK AFN+L + T L LEWA
Sbjct: 544 FLTKQDAKKAFNALCHSTHLYGRRLVLEWA 573
Score = 102 (41.0 bits), Expect = 2.7e-54, Sum P(3) = 2.7e-54
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM--VGSGLHRGFGFVEFITKNEAK 742
G + ++N+ F + ++E F G +K + KK G+ L GFGFVE+ A+
Sbjct: 392 GCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQ 451
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEADN--VEDIRKR 776
+A++ L Q + G +L ++ +E A V+ RK+
Sbjct: 452 KALRRL-QGCIVDGHKLEVKISERAVRPAVKSSRKK 486
Score = 88 (36.0 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 33/114 (28%), Positives = 53/114 (46%)
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
+L E ++ ++ R L ++ S +++ + ILV+N+P +E+E +F G
Sbjct: 229 ALGETEL-VQEIRRFLIENGVSLDSFSQAAGERSKTVILVKNLPATTSTAELEAVFGKHG 287
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
L V LP G+ VEF+ EAK+A L S + L LEWA
Sbjct: 288 SLGRVLLPT----GGIT---AIVEFLEPIEAKQAFTKLAYSK-FHSVPLYLEWA 333
Score = 84 (34.6 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL F STE+ + + F K GP++ + + K P G+ F+ + E +
Sbjct: 80 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKP-----KGFAFITYMIPEHAVK 134
Query: 643 ALKVLQNSSLDEHQIELKRSN-RNLESEATTVKRKSSNVAKQTGSK 687
A + + L S + L+ E + +SS+ KQ +K
Sbjct: 135 AYAEMDGQVFQGRMMHLLPSTIKKLKIEDIDAE-ESSSYKKQKEAK 179
Score = 60 (26.2 bits), Expect = 2.3e-62, Sum P(3) = 2.3e-62
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 480
+ V+NLP+ + DL+ +F +G L + P
Sbjct: 80 LFVRNLPFTSTEEDLEKIFSKYGPLSEIHFP 110
Score = 58 (25.5 bits), Expect = 1.2e-86, Sum P(4) = 1.2e-86
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 53 TEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAPDS 112
T+GK F F+ E + Q AL Y+ ++V +C N PK D
Sbjct: 5 TQGKSTGFIFVDLKSEAEVQKALKR-KKEYIGGQYVEVSRCENA-----PKETVTAKTDD 58
Query: 113 SAYQKL 118
+Q++
Sbjct: 59 QPWQRM 64
Score = 38 (18.4 bits), Expect = 1.2e-86, Sum P(4) = 1.2e-86
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPL-PLASV 253
+ V+NLP ++DL+ F PL+ +
Sbjct: 80 LFVRNLPFTSTEEDLEKIFSKYGPLSEI 107
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 495 (179.3 bits), Expect = 1.3e-110, Sum P(4) = 1.3e-110
Identities = 97/200 (48%), Positives = 139/200 (69%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF++TE++++ F K G + S ++++KK+ G LSMG+GFV++ E
Sbjct: 691 TLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKN--KAGALLSMGFGFVEYRKPEQAQ 748
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+ALK LQ +D H++E++ S R +S + + K S +QT +KI VR PFQ E
Sbjct: 749 KALKQLQGHVVDGHKLEVRISERATKSALNSGRHKHSP-RRQTDTKIWVRVCPFQGDSRE 807
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++E+F FGELK VRLPKK+ G+G HRGFGFV+F+TK +AKRA ALC STHLYGRRLVL
Sbjct: 808 LKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 867
Query: 762 EWAEEADNVEDIRKRTNRYF 781
EWA+ ++ +R++T +F
Sbjct: 868 EWADSEVSLPALRRKTAEHF 887
Score = 342 (125.4 bits), Expect = 1.3e-110, Sum P(4) = 1.3e-110
Identities = 87/248 (35%), Positives = 133/248 (53%)
Query: 188 DISDMEYLKLKTKSKDTAPSDPSVPPV-----SKAPVHKRQYHTIVVKNLPAGVKKKDLK 242
++SDM+YLK K + ++ S+ S + + ++ A KK++
Sbjct: 213 ELSDMDYLKSKVVAAESPSSEESEDEAVNCEEGSESEEEGSFAAPAQQDREAAPAKKNVM 272
Query: 243 AYFKPL-PLAS--VRTTF---LGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDN 296
+ PL P+A VR G ++ F E+ KAL N+ + G+ + +++
Sbjct: 273 EFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIP 332
Query: 297 SAKYSGAADDNNNASMENIKAKHWKSQE-DSVQFAEDIAESGRIFVRNLSYTVTEDDLTK 355
AK A ++N AK W+ + + ED+A+SGR+FVRNL YT +E+DL K
Sbjct: 333 VAK----------APLKN-GAKPWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEK 381
Query: 356 LFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415
LF +YGP++E+ PID T K KGFA VTF+ PEHA +AY +DG VF GRMLH++P
Sbjct: 382 LFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 441
Query: 416 KENEGNVD 423
K+ E + D
Sbjct: 442 KK-EASED 448
Score = 259 (96.2 bits), Expect = 1.3e-110, Sum P(4) = 1.3e-110
Identities = 56/132 (42%), Positives = 79/132 (59%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+E+ + F GT+TD LK+T +GKFR+F FIG+ E++AQ AL++FN +++ +SRI V
Sbjct: 15 EERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFNKSFIDTSRITV 74
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGK------KSKND 144
E C GD TKP++WSK+A SS Q K + E KD K K K K+D
Sbjct: 75 EFCKAFGDPTKPRAWSKHAQKSS--QSKPPPKDKDAISTEPKKDDKKKKAAGELEKLKDD 132
Query: 145 PTFSDFLQLHGK 156
F +FL +H K
Sbjct: 133 NEFQEFLSVHQK 144
Score = 157 (60.3 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 65/221 (29%), Positives = 102/221 (46%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
AK + +E+ + E+ +F++NL++ TE+ L +F K G + I K+ +K
Sbjct: 670 AKMEEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSC--SISKKKNK 727
Query: 377 -----TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL-IPGKPKENEGNVDGKVHCCI 430
+ GF V + PE A +A + L G V G L + I + ++ N G+ H
Sbjct: 728 AGALLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKSALN-SGR-HKHS 785
Query: 431 SERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG---- 486
R+ D +K I V+ P++ +LK +F FG+L V +P +TG
Sbjct: 786 PRRQTD---------TK--IWVRVCPFQGDSRELKEIFNTFGELKTVRLPKK-LTGTGTH 833
Query: 487 ----LVEFLQKNQAKAAFNSLAY-TKFKEVPLYLEWAPEGV 522
V+FL K AK AFN+L + T L LEWA V
Sbjct: 834 RGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV 874
Score = 137 (53.3 bits), Expect = 1.3e-110, Sum P(4) = 1.3e-110
Identities = 34/89 (38%), Positives = 47/89 (52%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LD+F+Q SK + L ++ +LP + + F G G VL+P +GIT +V L
Sbjct: 535 LDSFSQGGSGLSKTLTLQLSIKADSLPAEPQGGFTRLGSPGVVLIPRWGITAVVCSLPPV 594
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
F + + F VPLYLEWAP GVF
Sbjct: 595 PPGKPFVHVCTSTFHHVPLYLEWAPMGVF 623
Score = 100 (40.3 bits), Expect = 2.1e-65, Sum P(4) = 2.1e-65
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM--VGSGLHRGFGFVEFITKNEAK 742
G + ++N+ F + ++ +F G +K + KK G+ L GFGFVE+ +A+
Sbjct: 689 GCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQ 748
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEA 767
+A+K L Q + G +L + +E A
Sbjct: 749 KALKQL-QGHVVDGHKLEVRISERA 772
Score = 94 (38.1 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 32/129 (24%), Positives = 58/129 (44%)
Query: 628 GYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT--- 684
GY FV F + E + +ALK + IE+ R RN+ +K + +T
Sbjct: 295 GYVFVDFSSEEEVRKALKC-NREYMGGRYIEVFRE-RNIPVAKAPLKNGAKPWQGRTLGE 352
Query: 685 ---------GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
++ VRN+P+ + + ++E+LF +G + + P + + +GF FV F
Sbjct: 353 HEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSL-TKKPKGFAFVTF 411
Query: 736 ITKNEAKRA 744
+ A +A
Sbjct: 412 MFPEHAVKA 420
Score = 83 (34.3 bits), Expect = 7.6e-60, Sum P(3) = 7.6e-60
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 227 IVVKNLPAGVKK---KDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP G+K+ + L F L S++ T F +IGFK E+ ALN N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 279 KSF 281
KSF
Sbjct: 64 KSF 66
Score = 74 (31.1 bits), Expect = 8.6e-27, Sum P(3) = 8.6e-27
Identities = 23/105 (21%), Positives = 44/105 (41%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL + S+E+ + + F + GP++ + K P G+ FV F E +
Sbjct: 365 LFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKP-----KGFAFVTFMFPEHAVK 419
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK 687
A + + + S E+ +SS+ K+ SK
Sbjct: 420 AYAEVDGQVFQGRMLHVLPSTIKKEASEDANAPESSSYKKKKESK 464
Score = 72 (30.4 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL + E+ +LF +G L + L K+ K + F + F E A A H
Sbjct: 3 RLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQTALNH 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 68 (29.0 bits), Expect = 4.5e-62, Sum P(4) = 4.5e-62
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
DT ++++ F ++ F G + +V + +K G G+GFV F T++
Sbjct: 791 DTKIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKKLT----GTGTHRGFGFVDFLTKQD 846
Query: 640 LNQALKVLQNSS 651
+A L +S+
Sbjct: 847 AKRAFNALCHST 858
Score = 60 (26.2 bits), Expect = 3.3e-70, Sum P(3) = 3.3e-70
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT 485
+ V+NLPY + DL+ LF +G + + P +T
Sbjct: 365 LFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLT 400
Score = 59 (25.8 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 24/113 (21%), Positives = 50/113 (44%)
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
K L + + ++ S + ESE V + + +++ GS +A ++ +
Sbjct: 212 KELSDMDYLKSKVVAAESPSSEESEDEAVNCEEGSESEEEGSFAAPAQQDREAAPAK-KN 270
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ + LK V + G G+ FV+F ++ E ++A+K C ++ GR
Sbjct: 271 VMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALK--CNREYMGGR 321
Score = 58 (25.5 bits), Expect = 3.1e-57, Sum P(3) = 3.1e-57
Identities = 26/106 (24%), Positives = 44/106 (41%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
Y ++E L+ F G V+++ + K + FAF+ + + A A + VF
Sbjct: 372 YTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ-VFQ 430
Query: 86 SRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEH 131
R+ S + K S AP+SS+Y+K K + H
Sbjct: 431 GRMLHVLPSTI---KKEASEDANAPESSSYKKKKESKDKANSSSSH 473
Score = 43 (20.2 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
++VKNLP + LF FG L
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTL 28
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 453 (164.5 bits), Expect = 7.5e-110, Sum P(4) = 7.5e-110
Identities = 97/212 (45%), Positives = 141/212 (66%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKK-CGPIA-SVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
+TL++KNL F++T+ S+ F+K G + S +++K +P P + LSMG+GFVQFYT
Sbjct: 641 STLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAF 700
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG--SKILVRNIPFQ 696
ALK +Q LD H +ELK S+R ++ +KRK K+ G +K+LVRN+PF+
Sbjct: 701 DAKTALKDMQGELLDGHSLELKISHRE-NADKGALKRKEVK-QKEQGECTKLLVRNLPFE 758
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
A EVE LF+ FG +K +R+PKK HRGFGFV+FI+ +EA RA +L STHLYG
Sbjct: 759 ASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFDSLVHSTHLYG 818
Query: 757 RRLVLEWAEEADNVEDIRKRT-NRYFGTAVGL 787
RRLVLEWA++ + VE++R++T ++ G G+
Sbjct: 819 RRLVLEWAKDDETVEELREKTAEKFAGNKKGV 850
Score = 305 (112.4 bits), Expect = 7.5e-110, Sum P(4) = 7.5e-110
Identities = 73/205 (35%), Positives = 118/205 (57%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASV---RTTFLGMAYIGFKDEKNCNKALNKNKSFW 282
+++ LP+ K K++K + P+ + ++ R + A++ F + +AL K+ F
Sbjct: 175 SLIFSGLPSSAKGKNIKEWLNPIRVKAMKIARNEDVAAAFVTFNRPPDVRRALQKDGQFL 234
Query: 283 KGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVR 342
G ++ I K + + + + AS+E+ + K +E++V+ E I E+GR+F+R
Sbjct: 235 GGFKIGIEKIE---TPEPEHEVIEEHGASLES-RDK----EEETVR--EKILETGRLFLR 284
Query: 343 NLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTV 402
NL Y EDDL LF+KYG ++EV + IDK+T KGFA+V F+ PE A AY LDG V
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYV 344
Query: 403 FLGRMLHLIPGKPKEN-EGNVDGKV 426
F GRM+H++PG K EG + +V
Sbjct: 345 FKGRMMHILPGDEKRTKEGEEESEV 369
Score = 285 (105.4 bits), Expect = 7.5e-110, Sum P(4) = 7.5e-110
Identities = 60/138 (43%), Positives = 84/138 (60%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89
T++QL+ FE+ G ++D LKYT EGKFR FAF+G+ E A AL N T+ S ++
Sbjct: 15 TEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLT 74
Query: 90 VEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKP---EHTKDSKPGKKSKNDPT 146
VE+C GD KP++WSKYA DSSAY++ H K++ P + T++ P KK K+D
Sbjct: 75 VEECRPFGDANKPRAWSKYAKDSSAYKRTHG--EKEEANPGKSDETEEPAP-KKQKDDAK 131
Query: 147 FSDFLQLHGKDVSKLLPL 164
F FL+ G V K + L
Sbjct: 132 FDQFLEAKGVVVEKEVKL 149
Score = 196 (74.1 bits), Expect = 7.5e-110, Sum P(4) = 7.5e-110
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 434 KLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG-ITGLVEFLQ 492
KLDAF++ E RS ++L KNLP +L+ +FE FGD +VL+P G ++ LV
Sbjct: 469 KLDAFSKPAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSALVIMGN 528
Query: 493 KNQAKAAFNSLAYTKFKEVPLYLEWAPEGV 522
AK AF +LAY++F+ PLYLEWAP V
Sbjct: 529 PVDAKKAFRALAYSRFRSQPLYLEWAPYDV 558
Score = 153 (58.9 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 67/253 (26%), Positives = 111/253 (43%)
Query: 283 KGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVR 342
K +Q I + KD+ G + E ++A+ K + Q ++I +FV+
Sbjct: 594 KNRQQGITEEEKDD-----GEVIEEEEKPKE-VEAED-KKKSSKKQSEKEIESGSTLFVK 646
Query: 343 NLSYTVTEDDLTKLFEK-YGPL---AEV---ILPIDKETDKTKGFALVTFLMPEHATQAY 395
NL++ T+ L LF K YG L A++ + P + + GF V F A A
Sbjct: 647 NLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAFDAKTAL 706
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNL 455
+ + G + G L L K E G + +RK Q + ++ LV+NL
Sbjct: 707 KDMQGELLDGHSLEL---KISHRENADKGAL-----KRK--EVKQKEQGECTKL-LVRNL 755
Query: 456 PYRTLPTDLKALFEPFGDLGRVLVP--P-----YGITGLVEFLQKNQAKAAFNSLAY-TK 507
P+ +++ LFE FG + + +P P + G V+F+ ++A AF+SL + T
Sbjct: 756 PFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFDSLVHSTH 815
Query: 508 FKEVPLYLEWAPE 520
L LEWA +
Sbjct: 816 LYGRRLVLEWAKD 828
Score = 126 (49.4 bits), Expect = 8.4e-73, Sum P(4) = 8.4e-73
Identities = 43/141 (30%), Positives = 70/141 (49%)
Query: 637 RESLNQALKVLQNSSLDEHQIELKRSNRNLESE-ATTVKRKSSNVAKQTGSKILVRNIPF 695
+E N+ + + D IE + + +E+E +K S ++GS + V+N+ F
Sbjct: 591 KERKNRQQGITEEEKDDGEVIEEEEKPKEVEAEDKKKSSKKQSEKEIESGSTLFVKNLAF 650
Query: 696 QAKQSEVEELF-KAFGEL-KFVRLPKKMVGSG----LHRGFGFVEFITKNEAKRAMKALC 749
+E LF K +G+L K ++ KK+ + L GFGFV+F T +AK A+K +
Sbjct: 651 DTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAFDAKTALKDM- 709
Query: 750 QSTHLYGRRLVLEWA--EEAD 768
Q L G L L+ + E AD
Sbjct: 710 QGELLDGHSLELKISHRENAD 730
Score = 116 (45.9 bits), Expect = 5.0e-64, Sum P(3) = 5.0e-64
Identities = 30/78 (38%), Positives = 41/78 (52%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+NL T TE L K FEKYG +++ L KE K +GFA V FL A+ A
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKE-GKFRGFAFVGFLDEGSASNALAK 62
Query: 398 LDGTVFLGRMLHLIPGKP 415
+ T F + L + +P
Sbjct: 63 SNQTFFNSKKLTVEECRP 80
Score = 113 (44.8 bits), Expect = 4.6e-28, Sum P(2) = 4.6e-28
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 654 EHQIELKRSNRNLES---EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
EH++ ++ +LES E TV+ K +TG ++ +RN+P+ K+ +++ LFK +G
Sbjct: 250 EHEV-IEEHGASLESRDKEEETVREK----ILETG-RLFLRNLPYATKEDDLQFLFKKYG 303
Query: 711 ELKFVR--LPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
E+ V+ + KK +G +GF VEF+ A A AL
Sbjct: 304 EVSEVQVVIDKK---TGACKGFAIVEFVFPEAAVAAYSAL 340
Score = 98 (39.6 bits), Expect = 3.8e-62, Sum P(3) = 3.8e-62
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP---LPLASVRTT----FLGMAYIGFKDEKNCNKALNK-N 278
++VKNLP+ ++ L+ +F+ + AS++ T F G A++GF DE + + AL K N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Query: 279 KSFWKGKQLNI 289
++F+ K+L +
Sbjct: 65 QTFFNSKKLTV 75
Score = 90 (36.7 bits), Expect = 1.3e-70, Sum P(3) = 1.3e-70
Identities = 45/161 (27%), Positives = 69/161 (42%)
Query: 358 EKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
E P+ + I + D F VTF P +A Q DG G + + + E
Sbjct: 192 EWLNPIRVKAMKIARNEDVAAAF--VTFNRPPDVRRALQK-DGQFLGGFKIGIEKIETPE 248
Query: 418 NEGNVDGKVHCCISERKLDAFNQVVEAR---SKRIILVKNLPYRTLPTDLKALFEPFGDL 474
E V + + R D + V + + R+ L +NLPY T DL+ LF+ +G++
Sbjct: 249 PEHEVIEEHGASLESR--DKEEETVREKILETGRLFL-RNLPYATKEDDLQFLFKKYGEV 305
Query: 475 GRVLVPPYGITG------LVEFLQKNQAKAAFNSLAYTKFK 509
V V TG +VEF+ A AA+++L FK
Sbjct: 306 SEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFK 346
Score = 87 (35.7 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 309 NASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL 368
NA +K K K +E E ++ VRNL + + ++ LFE +G + + +
Sbjct: 728 NADKGALKRKEVKQKEQG--------ECTKLLVRNLPFEASVKEVETLFETFGAVKTIRI 779
Query: 369 PIDK-ETDKTKGFALVTFLMPEHATQAYQHL-DGTVFLGRMLHLIPGKPKE 417
P + + +GF V F+ + A +A+ L T GR L L K E
Sbjct: 780 PKKPGQKQQHRGFGFVDFISADEAHRAFDSLVHSTHLYGRRLVLEWAKDDE 830
Score = 85 (35.0 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 47/222 (21%), Positives = 89/222 (40%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTE-GKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
Y ++ L+ F++ G V++VQ+ + G + FA + + + A AA + YVF
Sbjct: 288 YATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDG-YVFK 346
Query: 86 SRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDP 145
R+ + T + + S+ PD L A K+ K ++ KK+
Sbjct: 347 GRMMHILPGDEKRTKEGEEESEVVPDDPD-NPLKAEAKKEKKKKSFKEEKDEQKKASAGK 405
Query: 146 TFSDFLQLHGKDVSKLLPLXXXXXXXXXXXXXXXXXXQIAHADISDMEYLKLKTKSKDT- 204
T + L + + + A ++ E +L +++D
Sbjct: 406 TAHSWNALF-LGANAIADTLAQRLNVKKSDLLTSDQGESAGVRLALAE-TRLVRETRDFF 463
Query: 205 APSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFK 246
+ + SK P KR ++ KNLPAGV+ ++L+ F+
Sbjct: 464 LENGVKLDAFSK-PAEKRSDTVMLAKNLPAGVESEELQRMFE 504
Score = 80 (33.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T L +KNL TE +R+ F+K G I+ ++ K+ G+F G+ FV F S
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKE----GKF--RGFAFVGFLDEGSA 56
Query: 641 NQAL 644
+ AL
Sbjct: 57 SNAL 60
Score = 79 (32.9 bits), Expect = 7.5e-52, Sum P(3) = 7.5e-52
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 677 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736
S K++ + +L +N+P + E++ +F+ FG+ V +P + S L V
Sbjct: 474 SKPAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSAL------VIMG 527
Query: 737 TKNEAKRAMKALCQSTHLYGRRLVLEWA 764
+AK+A +AL S + L LEWA
Sbjct: 528 NPVDAKKAFRALAYS-RFRSQPLYLEWA 554
Score = 70 (29.7 bits), Expect = 1.6e-68, Sum P(3) = 1.6e-68
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL V ++L ++FEK+G +V++P + ALV P A +A++ L
Sbjct: 485 MLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVS-----ALVIMGNPVDAKKAFRAL 539
Query: 399 DGTVFLGRMLHL 410
+ F + L+L
Sbjct: 540 AYSRFRSQPLYL 551
Score = 63 (27.2 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 25/109 (22%), Positives = 44/109 (40%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL + + ED ++ FKK G ++ V V D K+ G+ V+F E+
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVI--DKKTGA---CKGFAIVEFVFPEAAVA 335
Query: 643 ALKVLQNSSLDEHQIEL----KRSNRNLESEATTVKRKSSNVAKQTGSK 687
A L + + ++ + E E+ V N K K
Sbjct: 336 AYSALDGYVFKGRMMHILPGDEKRTKEGEEESEVVPDDPDNPLKAEAKK 384
Score = 49 (22.3 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
++VKNLP L+ FE +G +
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQI 29
Score = 45 (20.9 bits), Expect = 4.5e-57, Sum P(4) = 4.5e-57
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610
DT + KNL + ++R F+K G V
Sbjct: 482 DTVMLAKNLPAGVESEELQRMFEKFGDCTKV 512
Score = 44 (20.5 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
+E ++ K E G + L Y T+ +F F Y + Q +D
Sbjct: 268 EETVREKILETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVID 313
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 400 (145.9 bits), Expect = 1.1e-92, Sum P(4) = 1.1e-92
Identities = 83/208 (39%), Positives = 133/208 (63%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+YIKNLN+ +T +++ FK +V +A K +PK+P + L G+GF++F +++ +
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTG-------SKILV 690
+K L SS+D ++I LK S++N + KR+ S K G SKI++
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIII 799
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
+N+PF++ E+ +LF A+GE++ VR+PKK G HRGFGFVEF+T+ EAK AM+AL
Sbjct: 800 KNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGG--HRGFGFVEFLTEEEAKNAMEALGN 857
Query: 751 STHLYGRRLVLEWAEEADNVEDIRKRTN 778
S H YGR LVL++AE+ N++++R++ N
Sbjct: 858 S-HFYGRHLVLQYAEQDKNIDELREKAN 884
Score = 285 (105.4 bits), Expect = 1.1e-92, Sum P(4) = 1.1e-92
Identities = 62/150 (41%), Positives = 96/150 (64%)
Query: 266 KDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKA-KHWKSQE 324
K+ K ++ NK K K+ + K KDN G D++ + ++ IK +H ++E
Sbjct: 299 KENKKDKMKIDDNKENKKEKKKDKKKNKKDNDN--DG---DDDESKIKPIKYFEHDYTKE 353
Query: 325 DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
D ED+ ESGRIFVRNLSY+ E+DL K+F K+G ++E+ +PID ++ K+KG A +
Sbjct: 354 D-----EDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFIL 408
Query: 385 FLMPEHATQAYQHLDGTVFLGRMLHLIPGK 414
+L+PE+A QA +DG VF GR++H++PGK
Sbjct: 409 YLIPENAVQALNDMDGKVFQGRLIHVLPGK 438
Score = 228 (85.3 bits), Expect = 1.1e-92, Sum P(4) = 1.1e-92
Identities = 41/79 (51%), Positives = 56/79 (70%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
RS ++LVKN+P++T +L LF FG+L RV++ P L+E++ N+AK F +LA
Sbjct: 550 RSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPARTIALIEYIHPNEAKVGFKNLA 609
Query: 505 YTKFKEVPLYLEWAPEGVF 523
Y+KF VPLYLEWAPEGVF
Sbjct: 610 YSKFHHVPLYLEWAPEGVF 628
Score = 176 (67.0 bits), Expect = 1.1e-92, Sum P(4) = 1.1e-92
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T ++ K FE+ GTVTD ++ +GK R F FIG+ E A+ AL N T++ +S+I
Sbjct: 15 LTDKRFKEHFEKFGTVTDAKI-IKKDGKSRLFGFIGFSTEQSAKNALS-LNGTFIDTSKI 72
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAP---KQDLKPEHTK-DSKPGKKSKND 144
VE + +TT+ + WSKY+ SS+ ++L + K++LK + K + + KK K
Sbjct: 73 VVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQDKLEQQSNKKQKKS 132
Query: 145 PTFS 148
T S
Sbjct: 133 HTNS 136
Score = 134 (52.2 bits), Expect = 6.9e-44, Sum P(3) = 6.9e-44
Identities = 39/126 (30%), Positives = 63/126 (50%)
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
NQ ++ + ++ H I + + LE + ++ + +K++ + +LV+NIPF+ ++
Sbjct: 510 NQMDLAVRMTLMETHVIN--ETKKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEH 567
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
E+ ELF FGEL V L R +E+I NEAK K L S + L
Sbjct: 568 ELHELFSKFGELSRVVLSPA-------RTIALIEYIHPNEAKVGFKNLAYSK-FHHVPLY 619
Query: 761 LEWAEE 766
LEWA E
Sbjct: 620 LEWAPE 625
Score = 123 (48.4 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 43/193 (22%), Positives = 87/193 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVIL-----PIDKETDKTKGFALVTFLMPEHATQ 393
++++NL++ T + L F+ V + P + GF + F + A +
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 394 AYQHLDGTVFLGRMLHL-IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILV 452
+ L+G+ G + L + K + N ++ + + ++ N + I++
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIII 799
Query: 453 KNLPYRTLPTDLKALFEPFGDLGRVLVP--PYGIT---GLVEFLQKNQAKAAFNSLAYTK 507
KNLP+ + +++ LF +G++ V +P P G G VEFL + +AK A +L +
Sbjct: 800 KNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSH 859
Query: 508 FKEVPLYLEWAPE 520
F L L++A +
Sbjct: 860 FYGRHLVLQYAEQ 872
Score = 119 (46.9 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 45/167 (26%), Positives = 73/167 (43%)
Query: 259 GMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASM-ENIK 316
G +I F ++ + + K N S G ++++ K S N + + N + EN K
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISL-KLSDKNE---TNVQEINKRRELPENSK 780
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
Q + S +I ++NL + T ++ KLF YG + V +P K
Sbjct: 781 ------QSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIP-KKPNGG 833
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD 423
+GF V FL E A A + L + F GR HL+ + E + N+D
Sbjct: 834 HRGFGFVEFLTEEEAKNAMEALGNSHFYGR--HLVL-QYAEQDKNID 877
Score = 81 (33.6 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+I VRN+ + K+ ++E++F FG++ + +P S +G F+ ++ A +A+
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDY-DSKKSKGIAFILYLIPENAVQAL 419
Score = 78 (32.5 bits), Expect = 5.3e-54, Sum P(4) = 5.3e-54
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 321 KSQEDSVQFAEDIAESGR------IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
K ED +DI G + V+N+ + E +L +LF K+G L+ V+L
Sbjct: 531 KFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL------ 584
Query: 375 DKTKGFALVTFLMPEHATQAYQHL 398
+ AL+ ++ P A +++L
Sbjct: 585 SPARTIALIEYIHPNEAKVGFKNL 608
Score = 71 (30.1 bits), Expect = 6.6e-21, Sum P(3) = 6.6e-21
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++++NL++++ E+ + + F K G I+ + + D K S G F+ + E+ Q
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKK-----SKGIAFILYLIPENAVQ 417
Query: 643 AL 644
AL
Sbjct: 418 AL 419
Score = 67 (28.6 bits), Expect = 3.5e-50, Sum P(3) = 3.5e-50
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 414 KPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD 473
K +N+G+ D I + D + + I V+NL Y T DL+ +F FG
Sbjct: 327 KDNDNDGDDDESKIKPIKYFEHDYTKEDEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGK 386
Query: 474 LGRVLVP 480
+ + +P
Sbjct: 387 ISEIHIP 393
Score = 64 (27.6 bits), Expect = 1.3e-69, Sum P(4) = 1.3e-69
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK- 277
I V+NL K++DL+ F +P+ G+A+I + +N +ALN
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 278 NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQ 328
+ ++G+ +++ K AK DNNN E + +K++++ Q
Sbjct: 423 DGKVFQGRLIHVLP-GKAAPAKQFSENKDNNNNGAEG-GSSSFKAEKEQKQ 471
Score = 61 (26.5 bits), Expect = 2.7e-69, Sum P(4) = 2.7e-69
Identities = 42/170 (24%), Positives = 73/170 (42%)
Query: 266 KDEKNCNKALNKNKSF-WKGKQLNIYK--YSKDNSAKYSGAADDNNNASMENIKAKHWKS 322
K N ++ + KN+S ++ ++ + + +K+N K DDN E K K K+
Sbjct: 268 KFRSNNDEIIEKNQSIVYRDEEESEEEDVNNKENK-KDKMKIDDNKENKKEKKKDKK-KN 325
Query: 323 QEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP----IDKETDKTK 378
++D+ +D + +I + + Y E D TK E G + + KE D K
Sbjct: 326 KKDNDNDGDD--DESKI--KPIKYF--EHDYTKEDEDVGESGRIFVRNLSYSTKEEDLEK 379
Query: 379 GFALVTFLMPEHATQAY--QHLDGTVFLGRMLHLIPGKPKENEGNVDGKV 426
F+ + H Y + G F+ L+LIP + ++DGKV
Sbjct: 380 VFSKFGKISEIHIPIDYDSKKSKGIAFI---LYLIPENAVQALNDMDGKV 426
Score = 61 (26.5 bits), Expect = 5.5e-55, Sum P(3) = 5.5e-55
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
RI V+ L +T+ + FEK+G + + I K+ K++ F + F + A A
Sbjct: 5 RICVKQLPKHLTDKRFKEHFEKFGTVTDA--KIIKKDGKSRLFGFIGFSTEQSAKNALS- 61
Query: 398 LDGT 401
L+GT
Sbjct: 62 LNGT 65
Score = 58 (25.5 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPL---ASV-----RTTFLGMAYIGFKDEKNCNKALNKN 278
I VK LP + K K +F+ A + ++ G +IGF E++ AL+ N
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSRLFG--FIGFSTEQSAKNALSLN 63
Query: 279 KSFWKGKQL-----NIYKYSKDNS--AKYS-GAADDNNNASMENIKAK-HWKSQEDSVQ 328
+F ++ + + +N +KYS G++ + ME K K K ++D ++
Sbjct: 64 GTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQDKLE 122
Score = 54 (24.1 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVA 613
+T L +KN+ F + E + F K G ++ V ++
Sbjct: 552 NTVLLVKNIPFKTQEHELHELFSKFGELSRVVLS 585
Score = 51 (23.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPL-PLASVRTT------FLGMAYIGFKDE---KNCNKALN 276
I++KNLP K+++ F + SVR G ++ F E KN +AL
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALG 856
Query: 277 KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK 316
N F+ G+ L + +Y++ + K + N E IK
Sbjct: 857 -NSHFY-GRHL-VLQYAEQD--KNIDELREKANLDYEKIK 891
Score = 45 (20.9 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRV-LVPPYGITGLVEFLQKNQAKAAFNSLA 504
I VK LP K FE FG + ++ G + L F+ + ++A N+L+
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSRLFGFIGFSTEQSAKNALS 61
Score = 41 (19.5 bits), Expect = 1.5e-55, Sum P(4) = 1.5e-55
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 111 DSSAYQKLHNIAPKQD-LKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPL 164
+ S + ++N K+D +K + K++K KK D D SK+ P+
Sbjct: 289 EESEEEDVNNKENKKDKMKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPI 343
Score = 40 (19.1 bits), Expect = 1.8e-78, Sum P(4) = 1.8e-78
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 122 APKQDLKPEHTKDSKPGKKSKNDPTFSD 149
APK+ K + KK K+D + SD
Sbjct: 235 APKKQNKKDDVDSIINEKKKKHDSSVSD 262
Score = 39 (18.8 bits), Expect = 2.9e-47, Sum P(3) = 2.9e-47
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYF 245
KR ++VKN+P ++ +L F
Sbjct: 549 KRSNTVLLVKNIPFKTQEHELHELF 573
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 367 (134.2 bits), Expect = 2.0e-88, Sum P(5) = 2.0e-88
Identities = 87/203 (42%), Positives = 127/203 (62%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKC---GPIASVTVAR-KKDPKSPGQFLSMGYGFVQFYTRE 638
L +KNL+F +T++ +++HF K G I SVT+ + KK+ K +LS GYGFV+F + E
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEK----YLSSGYGFVEFDSVE 659
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+ + LQ + LD H + L R E++ + K SN K +K+ V+NI F+A
Sbjct: 660 TATSVYRDLQGTVLDGHALIL----RFCENKRSDKVGKDSNKDKPC-TKLHVKNIAFEAT 714
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758
+ E+ +LF FG++K +RLPKK +G + G+ FVEF+TK EA A KAL STH YGR
Sbjct: 715 KRELRQLFSPFGQIKSMRLPKKNIGQ--YAGYAFVEFVTKQEALNAKKALA-STHFYGRH 771
Query: 759 LVLEWAEEADNVEDIRKRTNRYF 781
LVLEWA + +++E IRKR+ F
Sbjct: 772 LVLEWANDDNSMEAIRKRSAAKF 794
Score = 248 (92.4 bits), Expect = 2.0e-88, Sum P(5) = 2.0e-88
Identities = 49/134 (36%), Positives = 85/134 (63%)
Query: 284 GKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRN 343
G+ +I + D + G D++ +ME ++ +QE S ++D+ ++GR+FVRN
Sbjct: 243 GQDADIRYFPIDGDVEAGGVGKDDDGDAME-VEGDGKVAQE-SKAVSDDVLDTGRLFVRN 300
Query: 344 LSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVF 403
L YT TE++L + F +G ++EV L +DKET +++G A + +L+PE A +A + LD + F
Sbjct: 301 LPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSF 360
Query: 404 LGRMLHLIPGKPKE 417
GR+LH++P K +E
Sbjct: 361 QGRLLHILPAKHRE 374
Score = 234 (87.4 bits), Expect = 2.0e-88, Sum P(5) = 2.0e-88
Identities = 47/133 (35%), Positives = 75/133 (56%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+ ++QL+ F +KG +TD +L + +GK R+F FIG+ +AQ A+ YFNNTY+ +S I
Sbjct: 13 VKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLI 72
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFS 148
VE +GD P+ WS+ + K + + LK + K K K +DP F
Sbjct: 73 IVEIAHKVGDENAPRPWSRLSHKKEEEAKKSS---SEGLKDGNAKGGKKRKAEVDDPEFQ 129
Query: 149 DFLQLHGKDVSKL 161
+FL++H + SK+
Sbjct: 130 EFLEVHQRSKSKI 142
Score = 205 (77.2 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 86/312 (27%), Positives = 127/312 (40%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLAS--VRTTFLGMAYIGFKDEKNCNKALNKNK 279
R H ++VKNLP +K+L F + MA F + AL K
Sbjct: 485 RSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALAVFLEPAEARAAL-KGM 543
Query: 280 SFWKGKQLNIY-KYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGR 338
++ + K +Y +++ N + D N S + E V+ D+ ES
Sbjct: 544 AYKRYKDAPLYLEWAPGNILEPKNLPDTNEERSDIEENGVRRVNLEQQVEIDPDVTESNV 603
Query: 339 IFVRNLSYTVTEDDLTKLFEKY---GPLAEVILPIDKETDK--TKGFALVTFLMPEHATQ 393
+ V+NLS+ T++ L K F K G + V + K+ +K + G+ V F E AT
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 663
Query: 394 AYQHLDGTVFLGR--MLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL 451
Y+ L GTV G +L K + G K C KL
Sbjct: 664 VYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCT---KLH--------------- 705
Query: 452 VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI---TG--LVEFLQKNQAKAAFNSLAYT 506
VKN+ + +L+ LF PFG + + +P I G VEF+ K +A A +LA T
Sbjct: 706 VKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALAST 765
Query: 507 KFKEVPLYLEWA 518
F L LEWA
Sbjct: 766 HFYGRHLVLEWA 777
Score = 191 (72.3 bits), Expect = 2.0e-88, Sum P(5) = 2.0e-88
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
RSK I+LVKNLP+ + +L +F FG L ++++PP L FL+ +A+AA +A
Sbjct: 485 RSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALAVFLEPAEARAALKGMA 544
Query: 505 YTKFKEVPLYLEWAPEGV 522
Y ++K+ PLYLEWAP +
Sbjct: 545 YKRYKDAPLYLEWAPGNI 562
Score = 162 (62.1 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 100/441 (22%), Positives = 165/441 (37%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRR-FAFIGYHREDQAQAALDYFNNTYVFS 85
Y T+E+L F G +++V L E K R A+I Y + A A++ +N+ F
Sbjct: 303 YTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSS-FQ 361
Query: 86 SRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKP-EHTKDSKPGKK--SK 142
R+ + +T+ K D+S K ++ K E D+K +
Sbjct: 362 GRLLHILPAKHRETS-----DKQVNDTSNLPKTFKQKREEQRKASEAGGDTKAWNSLFMR 416
Query: 143 NDPTFSDFLQLHGKDVSKLLPLXXXXXXXXXXXXXXXXXXQ----IAHADISDMEYLKLK 198
D + ++++G S+LL + +A A ++ K
Sbjct: 417 PDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNVTSLEKFA 476
Query: 199 TKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLAS--VRTT 256
T++ D R H ++VKNLP +K+L F +
Sbjct: 477 TRNGDEK---------------NRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPP 521
Query: 257 FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIY-KYSKDNSAKYSGAADDNNNASMENI 315
MA F + AL K ++ + K +Y +++ N + D N S
Sbjct: 522 TKTMALAVFLEPAEARAAL-KGMAYKRYKDAPLYLEWAPGNILEPKNLPDTNEERSDIEE 580
Query: 316 KAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY---GPLAEVILPIDK 372
+ E V+ D+ ES + V+NLS+ T++ L K F K G + V + K
Sbjct: 581 NGVRRVNLEQQVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHK 640
Query: 373 ETDK--TKGFALVTFLMPEHATQAYQHLDGTVFLGR--MLHLIPGKPKENEGNVDGKVHC 428
+ +K + G+ V F E AT Y+ L GTV G +L K + G K
Sbjct: 641 KNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKP 700
Query: 429 CISERKLDAFNQVVEARSKRI 449
C KL N EA + +
Sbjct: 701 CT---KLHVKNIAFEATKREL 718
Score = 104 (41.7 bits), Expect = 4.9e-59, Sum P(5) = 4.9e-59
Identities = 28/98 (28%), Positives = 54/98 (55%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T L++KN+ F +T+ +R+ F G I S+ + +K + GQ+ GY FV+F T++
Sbjct: 702 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKK----NIGQYA--GYAFVEFVTKQEA 755
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSS 678
A K L ++ + L+ +N + EA ++++S+
Sbjct: 756 LNAKKALASTHFYGRHLVLEWANDDNSMEA--IRKRSA 791
Score = 101 (40.6 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 44/188 (23%), Positives = 77/188 (40%)
Query: 580 DT-TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
DT L+++NL + +TE+ + HF G I+ V + K+ K S G ++ + E
Sbjct: 292 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKR-----SRGIAYILYLIPE 346
Query: 639 SLNQALKVLQNSSLDE---HQIELKR---SNRNLESEATTVK-----RKSSNVAKQTGSK 687
+A++ L NSS H + K S++ + + K R+ A + G
Sbjct: 347 CAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGGD 406
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-K 746
N F + +E + + +G K L ++ + G + I E K A+ K
Sbjct: 407 TKAWNSLFMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIA--ETKEALAK 464
Query: 747 ALCQSTHL 754
A T L
Sbjct: 465 AGVNVTSL 472
Score = 84 (34.6 bits), Expect = 2.2e-41, Sum P(4) = 2.2e-41
Identities = 33/132 (25%), Positives = 62/132 (46%)
Query: 637 RESLNQALKVL--QNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK--ILVRN 692
RE+ + A+++ + + E + L ++ N+ S K + N ++ SK +LV+N
Sbjct: 438 REAEDPAVRLALGETKVIAETKEALAKAGVNVTS---LEKFATRNGDEKNRSKHILLVKN 494
Query: 693 IPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST 752
+PF + + E+ ++F FG L + LP + F+ EA+ A+K +
Sbjct: 495 LPFASTEKELAQMFGKFGSLDKIILPPT-------KTMALAVFLEPAEARAALKGMAYKR 547
Query: 753 HLYGRRLVLEWA 764
+ L LEWA
Sbjct: 548 YK-DAPLYLEWA 558
Score = 83 (34.3 bits), Expect = 2.8e-41, Sum P(4) = 2.8e-41
Identities = 57/217 (26%), Positives = 92/217 (42%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCG--------PIASVTVARKKDPKSPGQFLS-MGYGFVQ 633
L +KNL F STE + + F K G P ++ +A +P L M Y +
Sbjct: 490 LLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALAVFLEPAEARAALKGMAYKRYK 549
Query: 634 ---FYTRESLNQAL--KVLQNSSLDEHQIELKRSNR-NLESEATTVKRKSSNVAKQTGSK 687
Y + L K L +++ + IE R NLE + +V T S
Sbjct: 550 DAPLYLEWAPGNILEPKNLPDTNEERSDIEENGVRRVNLEQQVEI----DPDV---TESN 602
Query: 688 IL-VRNIPFQAKQSEVEELFKAF---GELKFVRLPK-KMVGSGLHRGFGFVEFITKNEAK 742
+L V+N+ F+ +++ F G++ V + K K L G+GFVEF + A
Sbjct: 603 VLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETAT 662
Query: 743 RAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNR 779
+ L Q T L G L+L + E + + + K +N+
Sbjct: 663 SVYRDL-QGTVLDGHALILRFCENKRS-DKVGKDSNK 697
Score = 80 (33.2 bits), Expect = 1.7e-49, Sum P(3) = 1.7e-49
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
RI V+NL V ED L F + G + + L + K++ F + F + A QA ++
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKL-MRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 398 LDGTVFLGRMLHLIPGKPKENEGN 421
+ T +LG L ++ K + N
Sbjct: 62 FNNT-YLGTSLIIVEIAHKVGDEN 84
Score = 59 (25.8 bits), Expect = 9.6e-53, Sum P(4) = 9.6e-53
Identities = 26/83 (31%), Positives = 35/83 (42%)
Query: 395 YQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKN 454
Y +DG V G + G E EG DGKV E K + + + R + V+N
Sbjct: 250 YFPIDGDVEAGGVGKDDDGDAMEVEG--DGKV---AQESKAVSDDVLDTGR----LFVRN 300
Query: 455 LPYRTLPTDLKALFEPFGDLGRV 477
LPY +L F FG + V
Sbjct: 301 LPYTATEEELMEHFSTFGKISEV 323
Score = 50 (22.7 bits), Expect = 3.9e-68, Sum P(4) = 3.9e-68
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMA----YIGFKDEKNCNKALNKNK 279
I VKNLP VK+ L+ +F + A + + G + +IGF+ + +A+
Sbjct: 4 ICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYFN 63
Query: 280 SFWKGKQLNI 289
+ + G L I
Sbjct: 64 NTYLGTSLII 73
Score = 48 (22.0 bits), Expect = 2.0e-88, Sum P(5) = 2.0e-88
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 185 AHADISDMEYLKLKTKSKDTAPSD 208
A D+SDMEY K + K K+ + S+
Sbjct: 197 ASDDVSDMEYFKSRIK-KNLSDSE 219
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 394 (143.8 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 82/196 (41%), Positives = 129/196 (65%)
Query: 580 DT-TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
DT T+Y+KNLNF++ ++ ++ FK S + K DPK PG++LSMG+GFV+F +
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKA 676
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
S A+ + LD H++E+K S++ +++ A K+ SS K G+KIL++N+PF+A
Sbjct: 677 SAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSS---KPKGTKILIKNLPFEAT 733
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758
+ +V+ L A+G+L+ VR+PKK S RGF F EF+T EA AM+AL ++THL GR
Sbjct: 734 KKDVQSLLGAYGQLRSVRVPKKFDRSA--RGFAFAEFVTAREAANAMRAL-KNTHLLGRH 790
Query: 759 LVLEWAEEADNVEDIR 774
LVL++A A ++D++
Sbjct: 791 LVLQYASNA-TMDDMQ 805
Score = 224 (83.9 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 45/89 (50%), Positives = 57/89 (64%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LDAF ARS ++LVKN PY T +L +LF PFG+LGR+L+PP G ++EFL
Sbjct: 495 LDAFKNA--ARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAP 552
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+ AF+ LAYT+ K LYLE AP VF
Sbjct: 553 DCRQAFSKLAYTRIKSSILYLEKAPRDVF 581
Score = 217 (81.4 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 47/129 (36%), Positives = 77/129 (59%)
Query: 292 YSKDNSAKYSGAADDNN--NASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVT 349
+ K+N+ ++ ++ +ASM + QE ++Q I+E+ R+F+RNL+Y+
Sbjct: 279 FDKENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQL---ISETKRLFLRNLTYSCA 335
Query: 350 EDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409
EDDL LF +G L +V +PIDK+T+ KGFA + F + A +AY LD F GR+LH
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLH 395
Query: 410 LIPGKPKEN 418
++P K + +
Sbjct: 396 VLPAKARSS 404
Score = 156 (60.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 80/314 (25%), Positives = 138/314 (43%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLG-MAYIGFKDEKNCNKALNKNK 279
R + ++VKN P G ++L + F P L + G +A I F + +C +A +K
Sbjct: 503 RSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAGTIAIIEFLNAPDCRQAFSK-L 561
Query: 280 SFWKGKQLNIY--KYSKD---NSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIA 334
++ + K +Y K +D S K SG + + ++A S++ + E +
Sbjct: 562 AYTRIKSSILYLEKAPRDVFTTSFKQSGKPELAQKVNA--VEAT--TSEKVGTEDIESL- 616
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKY-GPLAEVIL--PIDKETDK--TKGFALVTFLMPE 389
++ I+V+NL+++ +++ K+F+ G L+ VI P K K + GF V F
Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKA 676
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI 449
A A ++G V G L + K + VD RK D+ + + +I
Sbjct: 677 SAVAAMHAMNGFVLDGHKLEI-----KLSHQGVDAAAEV----RKQDSS----KPKGTKI 723
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---GITGLV--EFLQKNQAKAAFNSLA 504
L+KNLP+ D+++L +G L V VP G EF+ +A A +L
Sbjct: 724 -LIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782
Query: 505 YTKFKEVPLYLEWA 518
T L L++A
Sbjct: 783 NTHLLGRHLVLQYA 796
Score = 150 (57.9 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 34 LKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKC 93
LK+ + +TDV + T EG RRFAFIG+ E+ A A+ Y N +YV +SRI+V +
Sbjct: 22 LKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRA 81
Query: 94 SNLGDTT-KPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQ 152
+ K + +SKYA + KL +++L+ + +K K + F D L
Sbjct: 82 LDYRSANEKLRPYSKYA-SKNIELKLQKKEKEEELRNLEEEKAKKKKDANLKRKFLDTLD 140
Query: 153 LHGKDVSKL 161
++ KL
Sbjct: 141 PKAREFLKL 149
Score = 126 (49.4 bits), Expect = 6.8e-33, Sum P(3) = 6.8e-33
Identities = 57/223 (25%), Positives = 101/223 (45%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMG---YGFVQF-Y 635
D L +KN + ++ + + F G + + + + +FL+ F + Y
Sbjct: 505 DNVLLVKNFPYGTSAEELTSLFSPFGELGRILIP-PAGTIAIIEFLNAPDCRQAFSKLAY 563
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSNR-NLES-----EATTVKRKSS-NVAKQTGSKI 688
TR + ++ L+ + D K+S + L EATT ++ + ++ + I
Sbjct: 564 TR--IKSSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKVGTEDIESLDTATI 621
Query: 689 LVRNIPFQAKQSEVEELFKAF-GELKFVRLPK---KMVGSGLHRGFGFVEFITKNEAKRA 744
V+N+ F KQ E +++FK G L V K K G L GFGFVEF K A A
Sbjct: 622 YVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAA 681
Query: 745 MKALCQSTHLYGRRLVLEWAEEA-DNVEDIRKR-TNRYFGTAV 785
M A+ L G +L ++ + + D ++RK+ +++ GT +
Sbjct: 682 MHAM-NGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKI 723
Score = 99 (39.9 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 32/126 (25%), Positives = 65/126 (51%)
Query: 644 LKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGS--------KILVRNIPF 695
LK + DEH L+R + ++A+ +++ +NV++Q + ++ +RN+ +
Sbjct: 276 LKSFDKENNDEH---LERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTY 332
Query: 696 QAKQSEVEELFKAFGELKFVRLP--KKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH 753
+ +++ LF FG+L+ V +P KK + +GF +++F ++A RA L +
Sbjct: 333 SCAEDDLKSLFGPFGQLEQVHMPIDKK---TNNPKGFAYIDFHDADDAVRAYLEL-DAKP 388
Query: 754 LYGRRL 759
GR L
Sbjct: 389 FQGRLL 394
Score = 93 (37.8 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPL-------ASVRTTFLGM----AYIGFKDEKNCNKAL 275
I++KN+P K+ L Y K LP SV T G+ A+IGFK+E++ +KA+
Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63
Query: 276 NK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK-HWKSQEDSVQFAED 332
NKS+ + ++ +++ SA + AS +NI+ K K +E+ ++ E+
Sbjct: 64 RYLNKSYVETSRIEVHRALDYRSANEK-LRPYSKYAS-KNIELKLQKKEKEEELRNLEE 120
Score = 78 (32.5 bits), Expect = 3.8e-48, Sum P(3) = 3.8e-48
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 430 ISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 480
+SE++ + Q++ + +KR+ L +NL Y DLK+LF PFG L +V +P
Sbjct: 309 VSEQERNI--QLI-SETKRLFL-RNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
Score = 75 (31.5 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
A ++ + +LV+N P+ E+ LF FGEL + +P G+ +EF+ +
Sbjct: 501 AARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPP--AGT-----IAIIEFLNAPD 553
Query: 741 AKRAMKALCQSTHLYGRRLVLEWA 764
++A L T + L LE A
Sbjct: 554 CRQAFSKLAY-TRIKSSILYLEKA 576
Score = 57 (25.1 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+++NL ++ ED ++ F G + V + K +P G+ ++ F+ + +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNP-----KGFAYIDFHDADDAVR 379
Query: 643 A 643
A
Sbjct: 380 A 380
Score = 50 (22.7 bits), Expect = 1.3e-64, Sum P(4) = 1.3e-64
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKA-LNK 277
+ ++NL + DLK+ F P +P+ G AYI F D + +A L
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 278 NKSFWKGKQLNI 289
+ ++G+ L++
Sbjct: 385 DAKPFQGRLLHV 396
Score = 49 (22.3 bits), Expect = 7.6e-53, Sum P(3) = 7.6e-53
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQL---KYTTEGKFRRFAFIGYHREDQAQAA 74
Y ++ LK+ F G + V + K T K FA+I +H D A A
Sbjct: 332 YSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPK--GFAYIDFHDADDAVRA 380
Score = 47 (21.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 214 VSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRT------TFLGMAYIGF- 265
V K K + I++KNLP KKD+++ L SVR + G A+ F
Sbjct: 710 VRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFV 769
Query: 266 --KDEKNCNKALNKNKSFWKGKQLNIYKYSKD 295
++ N +AL KN G+ L + +Y+ +
Sbjct: 770 TAREAANAMRAL-KNTHLL-GRHL-VLQYASN 798
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 365 (133.5 bits), Expect = 8.9e-78, Sum P(4) = 8.9e-78
Identities = 82/200 (41%), Positives = 125/200 (62%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++KNLNF +T ++ FK TV K DPK+ G+ LSMG+GFV+F T+E N
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678
Query: 643 ALKVLQNSSLDEHQIELKRSNRN-LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
A+ L LD H+++LK S++ + A+++K+ + SKI+++N+PF+A + +
Sbjct: 679 AISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKS------SKIIIKNLPFEATRKD 732
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF AFG+LK VR+PKK S RGF FVEF EA+ AM L + HL GRRLV+
Sbjct: 733 LLELFGAFGQLKSVRVPKKFDQSA--RGFAFVEFNLMKEAETAMSQL-EGVHLLGRRLVM 789
Query: 762 EWAEE-ADNVE-DIRKRTNR 779
++AE+ +N E +I + T +
Sbjct: 790 QYAEQDPENAEVEIERMTKK 809
Score = 235 (87.8 bits), Expect = 8.9e-78, Sum P(4) = 8.9e-78
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 328 QFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM 387
Q A+ I E+GR+F+RN+SY +E+D LF +YG L EV + ID T K+KGF V FL
Sbjct: 301 QIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLK 360
Query: 388 PEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
E AT+AY+ LD +F GR+LH++P K++
Sbjct: 361 KEDATRAYRSLDKQIFQGRLLHILPADKKKD 391
Score = 187 (70.9 bits), Expect = 8.9e-78, Sum P(4) = 8.9e-78
Identities = 41/105 (39%), Positives = 60/105 (57%)
Query: 419 EGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
E +V G V +R +D + + R +IILVKN P+ T ++ LF +G L R+L
Sbjct: 464 EAHVIGDVRKYFEDRGVDLTSFDKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRML 523
Query: 479 VPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+PP G ++EF A+AAF+ LAY +FK LYLE P+ +F
Sbjct: 524 MPPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLF 568
Score = 163 (62.4 bits), Expect = 8.9e-78, Sum P(4) = 8.9e-78
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIK 89
T+E+L+ F ++G VTDV+L G+ R+FAFIGY D A+ A+ YFN +++ ++RI+
Sbjct: 14 TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIE 73
Query: 90 VEKCSNLGDTTKPKSWSK 107
VE D T P S+ +
Sbjct: 74 VEFAKTFSDPTVPLSFKE 91
Score = 142 (55.0 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
Identities = 56/189 (29%), Positives = 85/189 (44%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLP---LASVRTTFLGMAYIGFKDEKNCNKALNKNKSF-- 281
+ VKNL + L FKPLP +A+V+T D KN K L+ F
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTK---------PDPKNSGKTLSMGFGFVE 669
Query: 282 WKGK-QLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIF 340
++ K Q N+ + D G D + + K H + S + +S +I
Sbjct: 670 FRTKEQANVAISTLD------GHVLDGHKLQL---KLSHKQGTGTSASSIKKSGKSSKII 720
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT-KGFALVTFLMPEHATQAYQHLD 399
++NL + T DL +LF +G L V +P K+ D++ +GFA V F + + A A L+
Sbjct: 721 IKNLPFEATRKDLLELFGAFGQLKSVRVP--KKFDQSARGFAFVEFNLMKEAETAMSQLE 778
Query: 400 GTVFLGRML 408
G LGR L
Sbjct: 779 GVHLLGRRL 787
Score = 139 (54.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 86/307 (28%), Positives = 119/307 (38%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLG-MAYIGFKDEKNCNKALNK- 277
+R I+VKN P G ++ F L + G +A I F+D + A +K
Sbjct: 489 ERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPAGTIAIIEFRDAPSARAAFSKL 548
Query: 278 -NKSFWKGKQLNIYKYSKD--------NSAKYSGAADDNNNASMENIKAKH--WKSQEDS 326
K F K L + K KD N N +A I A +S+ED
Sbjct: 549 AYKRF-KSSILYLEKGPKDLFTREPTTNEVATIPEQQQNEHAVEAKISANEILGESKEDD 607
Query: 327 VQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY-GPLAEVIL--PIDKETDKT--KGFA 381
+ + +FV+NL++ T L+ LF+ G + + P K + KT GF
Sbjct: 608 -EIESVQGPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFG 666
Query: 382 LVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQV 441
V F E A A LDG V G L L K +G G I +
Sbjct: 667 FVEFRTKEQANVAISTLDGHVLDGHKLQL---KLSHKQGT--GTSASSIKK--------- 712
Query: 442 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP---YGITGL--VEFLQKNQA 496
+S +II +KNLP+ DL LF FG L V VP G VEF +A
Sbjct: 713 -SGKSSKII-IKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEA 770
Query: 497 KAAFNSL 503
+ A + L
Sbjct: 771 ETAMSQL 777
Score = 108 (43.1 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 26/91 (28%), Positives = 53/91 (58%)
Query: 658 ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRL 717
E+ + + N E E T ++ + + ++TG ++ +RNI ++A + + LF +G L+ V +
Sbjct: 285 EVTQQSDN-EPELTPEEQIAQKI-EETG-RLFIRNISYEASEEDFRSLFSQYGALEEVHI 341
Query: 718 PKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+G +GF +V+F+ K +A RA ++L
Sbjct: 342 AID-TRTGKSKGFLYVQFLKKEDATRAYRSL 371
Score = 104 (41.7 bits), Expect = 6.1e-34, Sum P(3) = 6.1e-34
Identities = 44/163 (26%), Positives = 66/163 (40%)
Query: 606 PIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRN 665
P A ++ + L + G +TRE + + +EH +E K S
Sbjct: 539 PSARAAFSKLAYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQQNEHAVEAKISANE 598
Query: 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKK 720
+ E+ S V T + + V+N+ F + +LFK +K PK
Sbjct: 599 ILGESKEDDEIES-VQGPTVA-VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKN 656
Query: 721 MVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-LYGRRLVLE 762
G L GFGFVEF TK +A A+ L H L G +L L+
Sbjct: 657 S-GKTLSMGFGFVEFRTKEQANVAISTL--DGHVLDGHKLQLK 696
Score = 90 (36.7 bits), Expect = 1.8e-47, Sum P(4) = 1.8e-47
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+ IKNL F +T + F G + SV V +K D + G+ FV+F +
Sbjct: 719 IIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSA------RGFAFVEFNLMKEAET 772
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL 689
A+ L+ L ++ ++ + ++ E+ ++R + V KQ ++ L
Sbjct: 773 AMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVATQNL 819
Score = 78 (32.5 bits), Expect = 3.0e-31, Sum P(3) = 3.0e-31
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 682 KQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLP 718
K+ KI LV+N PF E+ ELF A+G+LK + +P
Sbjct: 488 KERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMP 525
Score = 76 (31.8 bits), Expect = 8.0e-46, Sum P(3) = 8.0e-46
Identities = 68/309 (22%), Positives = 121/309 (39%)
Query: 207 SDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFK 266
SDP+VP K KR+ +K+ + +++L+A K S
Sbjct: 81 SDPTVPLSFK---EKRKREEQKLKDEQERLLEQELRAQAKKQKTKSTSE---------ID 128
Query: 267 DEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--AADDNNNASMENIKAKHWKSQE 324
DE N L + K + ++ D A SG + D NA N ++ KS
Sbjct: 129 DEIASNPKLREYMEVMKPSH-QVKSWANDTIADGSGGPSVQDLENALNGNNESPVDKSNI 187
Query: 325 DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
+ V ED ++ + LS E++ + E+ L + LP ++E +K K +
Sbjct: 188 EVVNTVEDASDDEYNDFKELSNKHGENEDEEEEEEMMSLGD--LPTNEE-NKDKNESGEN 244
Query: 385 FLMPEHATQAYQHLDGTVFL---GRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQV 441
E+ + + + G + ++P + NE V +E +L Q+
Sbjct: 245 LAANENISDLEWLKSRSTRIKENGEVPEIVPEVKEVNE--VTEVTQQSDNEPELTPEEQI 302
Query: 442 VEARSKR-IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKN 494
+ + + ++N+ Y D ++LF +G L V + TG V+FL+K
Sbjct: 303 AQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKE 362
Query: 495 QAKAAFNSL 503
A A+ SL
Sbjct: 363 DATRAYRSL 371
Score = 76 (31.8 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 22/101 (21%), Positives = 49/101 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I+N+++ ++E+ R F + G + V +A D ++ G+ S G+ +VQF +E +
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAI--DTRT-GK--SKGFLYVQFLKKEDATR 366
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQ 683
A + L + + +++ + K+ + KQ
Sbjct: 367 AYRSLDKQIFQGRLLHILPADKKKDHRLDEFDLKNLPLKKQ 407
Score = 75 (31.5 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 39/167 (23%), Positives = 68/167 (40%)
Query: 325 DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
D F + + I V+N + T D++ +LF YG L +++P A++
Sbjct: 481 DLTSFDKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMP------PAGTIAIIE 534
Query: 385 FLMPEHATQAYQHLDGTVFLGRMLHLIPG-------KP-----------KENEGNVDGKV 426
F A A+ L F +L+L G +P ++NE V+ K+
Sbjct: 535 FRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQQNEHAVEAKI 594
Query: 427 HC--CISERKLDAFNQVVEARSKRI-ILVKNLPYRTLPTDLKALFEP 470
+ E K D +++ + + + VKNL + T L LF+P
Sbjct: 595 SANEILGESKED--DEIESVQGPTVAVFVKNLNFATTVQALSDLFKP 639
Score = 67 (28.6 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V+ L TE+ L + F K G + +V L + K +++ FA + + + A +A ++
Sbjct: 3 RLIVKGLPKYYTEEKLREFFSKQGDVTDVKL-MKKRNGESRKFAFIGYKSADAAERAVKY 61
Query: 398 LD 399
+
Sbjct: 62 FN 63
Score = 49 (22.3 bits), Expect = 6.9e-66, Sum P(4) = 6.9e-66
Identities = 40/210 (19%), Positives = 81/210 (38%)
Query: 22 EVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT 81
EVEF + + F+EK + +LK E + + + Q + ++
Sbjct: 73 EVEFAKTFSDPTVPLSFKEKRKREEQKLKDEQERLLEQE--LRAQAKKQKTKSTSEIDDE 130
Query: 82 YVFSSRIKVEKCSNLGDTTKPKSWSKYA-PDSS---AYQKLHNIAPKQDLKPEHTKDSKP 137
+ +++ E + + + KSW+ D S + Q L N + P + +
Sbjct: 131 IASNPKLR-EYMEVMKPSHQVKSWANDTIADGSGGPSVQDLENALNGNNESPVDKSNIEV 189
Query: 138 GK--KSKNDPTFSDFLQL---HGK-----DVSKLLPLXXXXXXXXXXXXXXXXXXQIAHA 187
+ +D ++DF +L HG+ + +++ L A+
Sbjct: 190 VNTVEDASDDEYNDFKELSNKHGENEDEEEEEEMMSLGDLPTNEENKDKNESGENLAANE 249
Query: 188 DISDMEYLKLK-TKSKDTAPSDPSVPPVSK 216
+ISD+E+LK + T+ K+ VP V +
Sbjct: 250 NISDLEWLKSRSTRIKENGEVPEIVPEVKE 279
Score = 46 (21.3 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 31 QEQLKAKFEEKGTVTDVQLKY-TTEGKFRRFAFIGYHREDQAQAALD 76
+EQ+ K EE G + + Y +E FR F Y ++ A+D
Sbjct: 299 EEQIAQKIEETGRLFIRNISYEASEEDFRSL-FSQYGALEEVHIAID 344
Score = 43 (20.2 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCG--------PIASVTVARKKD-PKSPGQFLSMGY 629
D + +KN F +T D I F G P ++ + +D P + F + Y
Sbjct: 492 DKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPAGTIAIIEFRDAPSARAAFSKLAY 550
Score = 42 (19.8 bits), Expect = 3.7e-65, Sum P(4) = 3.7e-65
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP------LPLASVRT-TFLGMAYIGFKDEKNCNKALNK-N 278
++VK LP ++ L+ +F + L R A+IG+K +A+ N
Sbjct: 4 LIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFN 63
Query: 279 KSF 281
KSF
Sbjct: 64 KSF 66
Score = 37 (18.1 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPPYGITGLVEFLQKNQAKAAFNSLAY 505
++VK LP L+ F GD+ +++ G + F+ A AA ++ Y
Sbjct: 4 LIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 384 (140.2 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 86/200 (43%), Positives = 124/200 (62%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+++IKNLNF++T ++ FK V K DPK G+ LSMG+GFV+F T+E N
Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQAN 723
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+ + + +D H+I+LK S+R T K KS+ K++G KI+V+N+PF+A + +
Sbjct: 724 AVIAAMDGTVIDGHKIQLKLSHRQASQSGNT-KTKSN---KKSG-KIIVKNLPFEATRKD 778
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
V ELF +FG+LK VR+PKK S RGF FVEF+ EA+ AM L HL GRRLV+
Sbjct: 779 VFELFNSFGQLKSVRVPKKFDKSA--RGFAFVEFLLPKEAENAMDQL-HGVHLLGRRLVM 835
Query: 762 EWAEE--ADNVEDIRKRTNR 779
++AEE D E+I + T +
Sbjct: 836 QYAEEDAVDAEEEIARMTKK 855
Score = 221 (82.9 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 54/160 (33%), Positives = 92/160 (57%)
Query: 266 KDEKNCNKALNKNKS---FWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKS 322
++EK N A ++ S ++K +++ I + + K S A + N S++ K + +
Sbjct: 268 ENEKRRNLAQDEKVSDLDWFKQRRVRIKESEAETREKSSSYATEQNE-SLDTKKEEQPER 326
Query: 323 ---QEDSVQFA-EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
Q+ + A E I ++GR+F+RN+ YT E+D KLF +G L EV + +D T ++K
Sbjct: 327 AVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSK 386
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
GFA V F ++A AY LD +F GR+LH++PG+ K++
Sbjct: 387 GFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKS 426
Score = 178 (67.7 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 40/109 (36%), Positives = 61/109 (55%)
Query: 419 EGNVDGKVHCCISERKLDA--FNQV--VEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 474
E +V G V + +D F+Q+ R ++ILVKN P+ T +L +F P+G L
Sbjct: 499 EAHVIGDVRKYFESKGVDLTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKL 558
Query: 475 GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
R+L+PP G +V+F A+AAF L+Y +FK+ +YLE P+ F
Sbjct: 559 ERLLMPPAGTIAIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGPKDCF 607
Score = 168 (64.2 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 94/332 (28%), Positives = 138/332 (41%)
Query: 220 HKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLG-MAYIGFKDEKNCNKALNK 277
++R I+VKN P G +++L F P L + G +A + F+D + A K
Sbjct: 527 NQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTIAIVQFRDTTSARAAFTK 586
Query: 278 NKSFWKGKQLNIY--KYSKDNSAKYSGAADD--NNNASMENIKAKHWK-SQEDSVQFAED 332
S+ + K IY + KD K ADD NN ++ E K S D ++ +D
Sbjct: 587 -LSYKRFKDGIIYLERGPKDCFTK-PAEADDLINNTSAKEEENPVEVKPSSNDLMEANKD 644
Query: 333 IAESGR--------------IFVRNLSYTVTEDDLTKLFEKY-G-PLAEV-ILPIDKETD 375
+ E IF++NL+++ T +LT F+ + G +A+V P K
Sbjct: 645 VTEGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQG 704
Query: 376 KT--KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISER 433
KT GF V F E A +DGTV G + L K + + G S +
Sbjct: 705 KTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQL---KLSHRQASQSGNTKTK-SNK 760
Query: 434 KLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY---GITGL--V 488
K S +II VKNLP+ D+ LF FG L V VP G V
Sbjct: 761 K-----------SGKII-VKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFV 808
Query: 489 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPE 520
EFL +A+ A + L L +++A E
Sbjct: 809 EFLLPKEAENAMDQLHGVHLLGRRLVMQYAEE 840
Score = 121 (47.7 bits), Expect = 4.3e-73, Sum P(4) = 4.3e-73
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 44 VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPK 103
+TDV++ G+ RRF FIGY E+ A A++YFN +++ +S+I+V + D P+
Sbjct: 43 ITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQ 102
Score = 114 (45.2 bits), Expect = 6.0e-43, Sum P(4) = 6.0e-43
Identities = 41/157 (26%), Positives = 74/157 (47%)
Query: 642 QALKVLQNSSL--DEHQIELKRSNRNLESEATTVKRKSSNVAKQT---GS--KILVRNIP 694
+A ++ N+S +E+ +E+K S+ +L V SSN + G I ++N+
Sbjct: 612 EADDLINNTSAKEEENPVEVKPSSNDLMEANKDVTEGSSNAHDEDVIDGPTVSIFIKNLN 671
Query: 695 FQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
F + + FK F ++K PK G L GFGFVEF TK +A + A+
Sbjct: 672 FSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQ-GKTLSMGFGFVEFRTKEQANAVIAAM- 729
Query: 750 QSTHLYGRRLVLEWAE-EADNVEDIRKRTNRYFGTAV 785
T + G ++ L+ + +A + + ++N+ G +
Sbjct: 730 DGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKII 766
Score = 95 (38.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 35/127 (27%), Positives = 63/127 (49%)
Query: 636 TRESLNQALKVLQNSSLDEHQIEL-KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694
TRE + + QN SLD + E +R+ E +++ QTG ++ +RNI
Sbjct: 301 TREK-SSSYATEQNESLDTKKEEQPERAVPQKTDEELAIEK-----INQTG-RLFLRNIL 353
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ-STH 753
+ +K+ + +LF FGEL+ V + +G +GF +V F ++K A+ A +
Sbjct: 354 YTSKEEDFRKLFSPFGELEEVHVALD-TRTGQSKGFAYVLF---KDSKNAVNAYVELDKQ 409
Query: 754 LYGRRLV 760
++ RL+
Sbjct: 410 IFQGRLL 416
Score = 83 (34.3 bits), Expect = 9.6e-40, Sum P(4) = 9.6e-40
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+ +KNL F +T + F G + SV V +K D KS + G+ FV+F +
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFD-KS-----ARGFAFVEFLLPKEAEN 818
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQ--TGSKILVRN 692
A+ L L ++ ++ + + + R + V KQ T +RN
Sbjct: 819 AMDQLHGVHLLGRRLVMQYAEEDAVDAEEEIARMTKKVRKQVATNEMAALRN 870
Score = 68 (29.0 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLP 718
KS+N ++ ILV+N PF + E+ E+F +G+L+ + +P
Sbjct: 524 KSTN--QRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMP 564
Score = 67 (28.6 bits), Expect = 4.7e-57, Sum P(4) = 4.7e-57
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 197 LKTKSKDTAPSDPSVPPVS--KAPVHK-RQYHTIVVKNLPAGVKKKDLKAYFKPL-PLAS 252
L TK K+ P + +VP + + + K Q + ++N+ K++D + F P L
Sbjct: 316 LDTK-KEEQP-ERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEE 373
Query: 253 VRTTF-------LGMAYIGFKDEKNC-NKALNKNKSFWKGKQLNI 289
V G AY+ FKD KN N + +K ++G+ L+I
Sbjct: 374 VHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHI 418
Score = 58 (25.5 bits), Expect = 1.2e-41, Sum P(3) = 1.2e-41
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLV 479
+ ++N+ Y + D + LF PFG+L V V
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHV 376
Score = 41 (19.5 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEK 359
RI V+ L +T+D+L + F K
Sbjct: 3 RIIVKGLPVYLTDDNLREHFTK 24
Score = 38 (18.4 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPI 607
D + +KN F +T + + F G +
Sbjct: 531 DKVILVKNFPFGTTREELGEMFLPYGKL 558
Score = 37 (18.1 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 75 LDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKD 134
L F T SS++ + + + + + + DSS Q +A LK E+ KD
Sbjct: 151 LQEFMETMKPSSQVTSWEKVGIDKSIEDEKLKREEEDSSV-QGNSLLAHALALKEENNKD 209
Query: 135 SKPGKKSKND 144
P +N+
Sbjct: 210 EAPNLVIENE 219
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 395 (144.1 bits), Expect = 2.6e-72, Sum P(4) = 2.6e-72
Identities = 83/202 (41%), Positives = 126/202 (62%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+IKNLNF++T S+ F+ S + K DPK+PGQ LSMG+GF F T+
Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQ 652
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
AL V+ +LD H + ++ S++ +++ K ++ +KI+++N+PFQA + +
Sbjct: 653 AALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKD 712
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
V LF A+G+L+ VR+PKK S RGFGF +F++ EA+ AM AL ++THL GRRLVL
Sbjct: 713 VRSLFGAYGQLRSVRVPKKFDRSA--RGFGFADFVSAREAENAMDAL-KNTHLLGRRLVL 769
Query: 762 EWA-EEADNVEDIRKRTNRYFG 782
E+A EEA + E+ +R + G
Sbjct: 770 EFANEEAIDAEEEIQRIEKKVG 791
Score = 193 (73.0 bits), Expect = 2.6e-72, Sum P(4) = 2.6e-72
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E+I S R+FVRNLSY E +L +F +G + E+ + D +KGFA V + P+
Sbjct: 289 ENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDA 348
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKE 417
A +AY++LDG +F GR+LH++P K+
Sbjct: 349 AVEAYRNLDGKIFQGRLLHILPASQKK 375
Score = 191 (72.3 bits), Expect = 2.6e-72, Sum P(4) = 2.6e-72
Identities = 42/89 (47%), Positives = 55/89 (61%)
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKN 494
LDAF Q R ILVKN Y T DL+ LFEPFG + R+L+PP G +V F + +
Sbjct: 467 LDAFKQ--RERGNLAILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPD 524
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
+A+ AF SLAY K + L+LE AP+ +F
Sbjct: 525 EAQKAFKSLAYRKLGDSILFLEKAPKDLF 553
Score = 140 (54.3 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 73/311 (23%), Positives = 127/311 (40%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLG-MAYIGFKDEKNCNKALNKNKSFWK- 283
I+VKN G K +DL+ F+P + + G +A + F KA K+ ++ K
Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPDEAQKAF-KSLAYRKL 538
Query: 284 GKQ-LNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSV--QFAEDIAESGRIF 340
G L + K KD + N ++ + + + + E++ + +F
Sbjct: 539 GDSILFLEKAPKD---LFEADVPPQNPLPETKAVSQGFSTADTFAADEGDEEVMATATLF 595
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVIL---PIDKETDKT--KGFALVTFLMPEHATQAY 395
++NL+++ T L + F + P K +T GF F A A
Sbjct: 596 IKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAAL 655
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNL 455
++G L R ++ K +D RK D ++ R+K I++KNL
Sbjct: 656 AVMNGYT-LDRHTLVVRASHK----GMDAAEE----RRKEDTAKKIAARRTK--IIIKNL 704
Query: 456 PYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSLAYTKFK 509
P++ D+++LF +G L V VP G G +F+ +A+ A ++L T
Sbjct: 705 PFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGF-GFADFVSAREAENAMDALKNTHLL 763
Query: 510 EVPLYLEWAPE 520
L LE+A E
Sbjct: 764 GRRLVLEFANE 774
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 52/191 (27%), Positives = 82/191 (42%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFK-DEKNCNKALNKNKSFWKG 284
T+ +KNL + L F+PL F+ A I K D KN + L+ F
Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLD------GFVS-ARIKTKPDPKNPGQTLSMGFGF--- 642
Query: 285 KQLNIYKYSKDNSAKYSGAADDNNN----ASMENIKAKHWKSQEDSVQFAEDIAESGRIF 340
++ A +G D + AS + + A + +ED+ + + A +I
Sbjct: 643 ADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAK--KIAARRTKII 700
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT-KGFALVTFLMPEHATQAYQHLD 399
++NL + T+ D+ LF YG L V +P K+ D++ +GF F+ A A L
Sbjct: 701 IKNLPFQATKKDVRSLFGAYGQLRSVRVP--KKFDRSARGFGFADFVSAREAENAMDALK 758
Query: 400 GTVFLGRMLHL 410
T LGR L L
Sbjct: 759 NTHLLGRRLVL 769
Score = 112 (44.5 bits), Expect = 2.6e-72, Sum P(4) = 2.6e-72
Identities = 34/108 (31%), Positives = 52/108 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T +QLK FE + VTD + RR F+G+ + AQ A+ YFN TY+ S+I
Sbjct: 15 LTNDQLKKHFETRFHVTDAHVLPK-----RRIGFVGFKSSEAAQQAVSYFNKTYMRMSKI 69
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSK 136
V+ + + S+ A A +N+ K+D + KDSK
Sbjct: 70 SVDIAKPIDAEPAHRKDSRTAQPDDALG--NNLKRKRD--GDTIKDSK 113
Score = 103 (41.3 bits), Expect = 2.8e-39, Sum P(4) = 2.8e-39
Identities = 30/108 (27%), Positives = 53/108 (49%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T + IKNL F +T+ +R F G + SV V +K D +S + G+GF F +
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFD-RS-----ARGFGFADFVSAREA 750
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKI 688
A+ L+N+ L ++ L+ +N EA + + + K+ G ++
Sbjct: 751 ENAMDALKNTHLLGRRLVLEFANE----EAIDAEEEIQRIEKKVGEQL 794
Score = 93 (37.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 26/105 (24%), Positives = 57/105 (54%)
Query: 649 NSSLDEHQIEL--KRSNRNLESEATTVKRKSSNVAK-QTGSKILVRNIPFQAKQSEVEEL 705
NS++++ + E K + +L ++A T +N+ + +++ VRN+ ++ K+SE+E +
Sbjct: 256 NSNVEKPEAESPEKPAESDL-TKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPV 314
Query: 706 FKAFGELK--FVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
F FG+++ V + S +GF +V++ + A A + L
Sbjct: 315 FSPFGKIEEIHVAFDTRFTTS---KGFAYVQYADPDAAVEAYRNL 356
Score = 78 (32.5 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 45/215 (20%), Positives = 89/215 (41%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVT---------VARKKDPKSPGQFLSMGYGFVQ 633
+ +KN ++ + + +R+ F+ G I + VA + ++ F S+ Y
Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPDEAQKAFKSLAY---- 535
Query: 634 FYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNV-AKQTGSK----- 687
L ++ L+ + D + ++ N E++A + +++ A G +
Sbjct: 536 ----RKLGDSILFLEKAPKDLFEADVPPQNPLPETKAVSQGFSTADTFAADEGDEEVMAT 591
Query: 688 --ILVRNIPFQAKQSEVEELFKAFGELKFVRL---PK-KMVGSGLHRGFGFVEFITKNEA 741
+ ++N+ F + E F+ R+ P K G L GFGF +F TK +A
Sbjct: 592 ATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQA 651
Query: 742 KRAMKALCQSTHLYGRRLVLEWAEEA-DNVEDIRK 775
+ A+ A+ L LV+ + + D E+ RK
Sbjct: 652 QAAL-AVMNGYTLDRHTLVVRASHKGMDAAEERRK 685
Score = 68 (29.0 bits), Expect = 2.7e-59, Sum P(4) = 2.7e-59
Identities = 43/231 (18%), Positives = 91/231 (39%)
Query: 106 SKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLHGKDVSKLLPLX 165
S + P + YQ + + Q +H ++ + +K + + SD+L+ S+LL L
Sbjct: 178 SSHVPVVAGYQPTTDESDGQPSPEKHEEELEDPQKDQAPVSDSDWLR---SKTSRLLGLL 234
Query: 166 XXXXXXXXXXXXXXXX-XQIAHADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQY 224
I ++++ E + ++ P+ V + R
Sbjct: 235 DEDEQETFASPAAATNPTPIINSNVEKPEAESPEKPAESDLTKAPTAAEVDTNIENIRIS 294
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPL-PLASVR-------TTFLGMAYIGFKDEKNCNKAL- 275
+ V+NL K+ +L+ F P + + TT G AY+ + D +A
Sbjct: 295 ARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYR 354
Query: 276 NKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDS 326
N + ++G+ L+I S+ + K D++ + + K K K ++++
Sbjct: 355 NLDGKIFQGRLLHILPASQKKTYKL----DEHELSKLPLKKQKQIKRKQEA 401
Score = 64 (27.6 bits), Expect = 3.8e-51, Sum P(3) = 3.8e-51
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEV-ILPIDKETDKTKGFALVTFLMPEHATQ 393
ES R+FV L T+T D L K FE + + +LP + GF V F E A Q
Sbjct: 2 ESTRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVLP-----KRRIGF--VGFKSSEAAQQ 54
Query: 394 AYQHLDGTVFLGRMLHLIPGKPKENE 419
A + + T + + KP + E
Sbjct: 55 AVSYFNKTYMRMSKISVDIAKPIDAE 80
Score = 62 (26.9 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLV 479
+ V+NL Y T ++L+ +F PFG + + V
Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHV 326
Score = 47 (21.6 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 25 FIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAA 74
F Y E L+ FE G +T +L G A + + R D+AQ A
Sbjct: 485 FSYGTKTEDLRKLFEPFGQIT--RLLMPPSGTI---AIVAFARPDEAQKA 529
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 209 (78.6 bits), Expect = 9.5e-54, Sum P(5) = 9.5e-54
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 442 VEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFN 501
V+ RSK I+LVK+LP+ + +L +F FG L ++++PP LV FL+ +A+AA N
Sbjct: 415 VKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMALVVFLEAAEARAAMN 474
Query: 502 SLAYTKFKEVPLYLEWAPEGV 522
LAYT++K+ PLYLEWAP +
Sbjct: 475 GLAYTRYKDAPLYLEWAPRDI 495
Score = 205 (77.2 bits), Expect = 9.5e-54, Sum P(5) = 9.5e-54
Identities = 37/87 (42%), Positives = 58/87 (66%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
++D+ ++GR+FV L Y+ TE++L + F K+G ++EV L +DK+T +G A V +L+PE
Sbjct: 220 SDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPE 279
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPK 416
A A LD F GR LH++P KP+
Sbjct: 280 SAKMAMDKLDKLPFQGRTLHILPAKPR 306
Score = 159 (61.0 bits), Expect = 9.5e-54, Sum P(5) = 9.5e-54
Identities = 45/134 (33%), Positives = 74/134 (55%)
Query: 583 LYIKNLNFNSTEDSIRRHFK---KCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
L++KNL+F +T++ +++H K G I SV K+ + + S GYGFV+F + E+
Sbjct: 537 LHVKNLSFKTTDEGLKKHLTGVVKQGKILSV----KQIIRDWTRRRSSGYGFVEFDSVET 592
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
+ L + LD H + L S N SE TV S V K +K+ V+N+ F+A +
Sbjct: 593 ATSVYRDLPGNVLDGHSLILNFSE-NKRSE--TVGEGSDKVTKL--AKLHVKNVAFEATK 647
Query: 700 SEVEELFKAFGELK 713
E+ +LF FG+++
Sbjct: 648 KELRQLFSPFGQIQ 661
Score = 155 (59.6 bits), Expect = 9.5e-54, Sum P(5) = 9.5e-54
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T++QL+ F EKG +TDV+LK ++G+ R+FA+IG+ E +AQ A+ YFN + S +I
Sbjct: 15 VTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAITYFNKNFKHSHQI 74
Query: 89 KV 90
V
Sbjct: 75 SV 76
Score = 150 (57.9 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 67/267 (25%), Positives = 111/267 (41%)
Query: 216 KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLAS--VRTTFLGMAYIGFKDEKNCNK 273
K V R H ++VK+LP +K+L F+ V MA + F +
Sbjct: 412 KGDVKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMALVVFLEAAEARA 471
Query: 274 ALNKNKSFWKGKQLNIY-KYSKDNSAKYSGAADDNNNAS-MENIKAKHWKSQEDSVQFAE 331
A+N ++ + K +Y +++ + + AD+ S +E A+ + + V
Sbjct: 472 AMN-GLAYTRYKDAPLYLEWAPRDILEPKALADNKEKKSAVEENDARR-VNLDQQVGIYS 529
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFE---KYGPLAEVILPI-DKETDKTKGFALVTFLM 387
DI ES + V+NLS+ T++ L K K G + V I D ++ G+ V F
Sbjct: 530 DITESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRSSGYGFVEFDS 589
Query: 388 PEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSK 447
E AT Y+ L G V G L L + K +E +G D ++ +
Sbjct: 590 VETATSVYRDLPGNVLDGHSLILNFSENKRSETVGEGS----------DKVTKLAKLH-- 637
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDL 474
VKN+ + +L+ LF PFG +
Sbjct: 638 ----VKNVAFEATKKELRQLFSPFGQI 660
Score = 103 (41.3 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 41/149 (27%), Positives = 66/149 (44%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ V++L + TE +L ++F K+G L +++LP TK ALV FL A A L
Sbjct: 423 LLVKHLPFASTEKELAQMFRKFGSLDKIVLP------PTKTMALVVFLEAAEARAAMNGL 476
Query: 399 DGTVFLGRMLHL--IPGKPKENEGNVDGKVH-CCISE---RKLDAFNQV---VEARSKRI 449
T + L+L P E + D K + E R+++ QV + +
Sbjct: 477 AYTRYKDAPLYLEWAPRDILEPKALADNKEKKSAVEENDARRVNLDQQVGIYSDITESNV 536
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
+ VKNL ++T LK G++L
Sbjct: 537 LHVKNLSFKTTDEGLKKHLTGVVKQGKIL 565
Score = 91 (37.1 bits), Expect = 3.0e-29, Sum P(4) = 3.0e-29
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ +V ++ +LV+++PF + + E+ ++F+ FG L + LP + V F
Sbjct: 411 RKGDVKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPT-------KTMALVVF 463
Query: 736 ITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
+ EA+ AM L T L LEWA
Sbjct: 464 LEAAEARAAMNGLAY-TRYKDAPLYLEWA 491
Score = 85 (35.0 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 29/124 (23%), Positives = 53/124 (42%)
Query: 656 QIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFV 715
+++ R +++ + A V+ S+ G ++ V +P+ + E+ E F FG++ V
Sbjct: 198 EVKADRVDKDDDGHAMEVEADGSDDVLDAG-RLFVHGLPYSTTEEELMEHFSKFGDISEV 256
Query: 716 RLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL-VLEWAEEADNVEDIR 774
L RG FV ++ AK AM L GR L +L A + + +
Sbjct: 257 HLVLDKDTRSC-RGMAFVLYLIPESAKMAMDKL-DKLPFQGRTLHILPAKPRAMSAKQVD 314
Query: 775 KRTN 778
+N
Sbjct: 315 NSSN 318
Score = 83 (34.3 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 42/184 (22%), Positives = 72/184 (39%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ L +++TE+ + HF K G I+ V + KD +S G FV + ES
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRS-----CRGMAFVLYLIPESAKM 283
Query: 643 ALKVLQNSSLDE---HQIELK---RSNRNLESEATTVK-----RKSSNVAKQTGSKILVR 691
A+ L H + K S + +++ + K R+ A +
Sbjct: 284 AMDKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREEQRKASEACGNTNAW 343
Query: 692 NIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-KALCQ 750
N F + +E L +++G K L ++ + G I E K A+ KA +
Sbjct: 344 NSFFMRPDTILENLVRSYGVTKSELLDRECEDPAVRLALGETRVIM--ETKEALAKAGVR 401
Query: 751 STHL 754
T L
Sbjct: 402 VTSL 405
Score = 76 (31.8 bits), Expect = 3.8e-28, Sum P(3) = 3.8e-28
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD-KTKGFALVTFLMPEHATQAYQ 396
RI V+N+ VTED L +F + G + +V L + +D +++ FA + F + A A
Sbjct: 5 RIIVKNVPKYVTEDQLRGIFSEKGEITDVKLK--RLSDGRSRQFAYIGFRSEQKAQDAIT 62
Query: 397 HLDGTVFLGRMLHLIPGKP--KENEGNVD 423
+ + + ++ P + +G VD
Sbjct: 63 YFNKNFKHSHQISVLVADPPPRRTQGKVD 91
Score = 70 (29.7 bits), Expect = 4.2e-27, Sum P(4) = 4.2e-27
Identities = 43/197 (21%), Positives = 85/197 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF----YTRE 638
L +K+L F STE + + F+K G + + + K + FL YTR
Sbjct: 423 LLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKT-MALVVFLEAAEARAAMNGLAYTRY 481
Query: 639 S-----LNQALK-VLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKIL-VR 691
L A + +L+ +L +++ E K + ++ + ++ + T S +L V+
Sbjct: 482 KDAPLYLEWAPRDILEPKALADNK-EKKSAVEENDARRVNLDQQVGIYSDITESNVLHVK 540
Query: 692 NIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR---GFGFVEFITKNEAKRAMKAL 748
N+ F+ +++ + + K+++ R G+GFVEF + A + L
Sbjct: 541 NLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRSSGYGFVEFDSVETATSVYRDL 600
Query: 749 CQSTHLYGRRLVLEWAE 765
+ L G L+L ++E
Sbjct: 601 PGNV-LDGHSLILNFSE 616
Score = 68 (29.0 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLG------MAYIGFKDEKNCNKALNK-N 278
I+VKN+P V + L+ F + V+ L AYIGF+ E+ A+ N
Sbjct: 6 IIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAITYFN 65
Query: 279 KSFWKGKQLNI 289
K+F Q+++
Sbjct: 66 KNFKHSHQISV 76
Score = 63 (27.2 bits), Expect = 3.0e-21, Sum P(4) = 3.0e-21
Identities = 31/111 (27%), Positives = 47/111 (42%)
Query: 411 IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEP 470
I G+ K + + D H E + D + V++A + V LPY T +L F
Sbjct: 195 IDGEVKADRVDKDDDGHAM--EVEADGSDDVLDAGR---LFVHGLPYSTTEEELMEHFSK 249
Query: 471 FGDLGRV-LV---PPYGITGL--VEFLQKNQAKAAFNSLAYTKFKEVPLYL 515
FGD+ V LV G+ V +L AK A + L F+ L++
Sbjct: 250 FGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHI 300
Score = 61 (26.5 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 321 KSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
K E + ++ + + ++ V+N+++ T+ +L +LF +G + E I+ E +K +
Sbjct: 618 KRSETVGEGSDKVTKLAKLHVKNVAFEATKKELRQLFSPFGQIQESWASIE-ECEKIR 674
Score = 60 (26.2 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALD 76
Y T+E+L F + G +++V L + + R AF+ Y + A+ A+D
Sbjct: 236 YSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMD 286
Score = 45 (20.9 bits), Expect = 9.5e-54, Sum P(5) = 9.5e-54
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 188 DISDMEYLKLKTK 200
D+SDMEY K + K
Sbjct: 162 DVSDMEYFKSRIK 174
Score = 42 (19.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL 474
I+VKN+P L+ +F G++
Sbjct: 6 IIVKNVPKYVTEDQLRGIFSEKGEI 30
Score = 40 (19.1 bits), Expect = 3.5e-36, Sum P(4) = 3.5e-36
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 292 YSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTED 351
+S D S ADD N A + +K K+++ V +D+++ F + + D
Sbjct: 126 WSNDMCIHPSNGADDPNKAKRSFLDSK--KTRKSKV--GDDVSDM-EYFKSRIKKNLDSD 180
Query: 352 DLTKLFEKYGPLAEVILPIDKE 373
T E A + PID E
Sbjct: 181 CETDSRED----AINVFPIDGE 198
>RGD|1308928 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0040019 "positive regulation
of embryonic development" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473973 IPI:IPI00777247 Ensembl:ENSRNOT00000060041
UCSC:RGD:1308928 Uniprot:D3ZUN0
Length = 451
Score = 261 (96.9 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 51/128 (39%), Positives = 80/128 (62%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+++ + F GT+TD LK+T EGKFR+F FIG+ E++AQAAL++F+ +++ +SRI V
Sbjct: 15 EDRFRQLFAAFGTLTDCSLKFTKEGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTSRITV 74
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG--KKSKNDPTFS 148
E C + GD +KP++WSK+A S ++ + D K + K P +K K D F
Sbjct: 75 EFCKSFGDPSKPRAWSKHAQKPSQPKQPSQDSIPSDTKKDKKKKKVPSDLEKLKEDAEFQ 134
Query: 149 DFLQLHGK 156
+FL +H K
Sbjct: 135 EFLSIHQK 142
Score = 170 (64.9 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 44/143 (30%), Positives = 77/143 (53%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPL-PLAS--VRTTF---LGMAYIGFKDEKNCNKALNKN 278
+T+ ++ P V +K++ + PL P+A VR G ++ E+ KAL N
Sbjct: 294 YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 353
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGR 338
+ + G+ + +++ + ++A+ GA ++ +H +E+ ED+A+SGR
Sbjct: 354 REYMGGRYIEVFREKQASAAR--GAPKSSSAPWQGRTLGEH---EEE-----EDLADSGR 403
Query: 339 IFVRNLSYTVTEDDLTKLFEKYG 361
+FVRNLSYT +E+DL KLF YG
Sbjct: 404 LFVRNLSYTSSEEDLEKLFSAYG 426
Score = 75 (31.5 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 30/140 (21%), Positives = 56/140 (40%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ ++ FN TE ++ P+A + + R + G GY FV + E +
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAPLKPVA-IRIVRN----AHGN--KTGYVFVDLSSEEEVK 347
Query: 642 QALKVLQN-------SSLDEHQIELKRSNRNLES---EATTVKRKSSNVAKQTGSKILVR 691
+ALK + E Q R S + T+ ++ VR
Sbjct: 348 KALKCNREYMGGRYIEVFREKQASAARGAPKSSSAPWQGRTLGEHEEEEDLADSGRLFVR 407
Query: 692 NIPFQAKQSEVEELFKAFGE 711
N+ + + + ++E+LF A+G+
Sbjct: 408 NLSYTSSEEDLEKLFSAYGD 427
Score = 72 (30.4 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 36/144 (25%), Positives = 59/144 (40%)
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK-GFALVTFLMPEHATQAY---- 395
+R + VTE ++ E PL V + I + K G+ V E +A
Sbjct: 298 LRGAPFNVTEKNV---LEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNR 354
Query: 396 QHLDGT---VFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILV 452
+++ G VF + G PK + G+ + E + + A S R+ V
Sbjct: 355 EYMGGRYIEVFREKQASAARGAPKSSSAPWQGRT---LGEHE----EEEDLADSGRLF-V 406
Query: 453 KNLPYRTLPTDLKALFEPFGDLGR 476
+NL Y + DL+ LF +GD G+
Sbjct: 407 RNLSYTSSEEDLEKLFSAYGDQGQ 430
Score = 69 (29.3 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 21/91 (23%), Positives = 41/91 (45%)
Query: 667 ESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 726
+ A V++ +S T + +R PF + V E + +R+ + G+
Sbjct: 275 QEAAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVA-IRIVRNAHGN-- 331
Query: 727 HRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
G+ FV+ ++ E K+A+K C ++ GR
Sbjct: 332 KTGYVFVDLSSEEEVKKALK--CNREYMGGR 360
Score = 43 (20.2 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 188 DISDMEYLKLKTKSKDTAPSD 208
++SDM+YLK K + + D
Sbjct: 208 ELSDMDYLKSKMVRAEVSSED 228
>UNIPROTKB|H0YIL2 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC009731 EMBL:AC073863
EMBL:AC090669 HGNC:HGNC:29098 ChiTaRS:RBM19 Ensembl:ENST00000552384
Bgee:H0YIL2 Uniprot:H0YIL2
Length = 110
Score = 265 (98.3 bits), Expect = 6.6e-22, P = 6.6e-22
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 709 FGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
FGELK VRLPKKM G+G HRGFGFV+F+TK +AKRA ALC STHLYGRRLVLEWA+
Sbjct: 5 FGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEV 64
Query: 769 NVEDIRKRTNRYF 781
++ +R++T +F
Sbjct: 65 TLQALRRKTAAHF 77
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 227 (85.0 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 57/195 (29%), Positives = 100/195 (51%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
++TL+++NL F + +D + F GPI V +P++ G+ + GYGFV F E
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVT--NPET-GE--NRGYGFVTFSMLED 58
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS--SNVAKQTGSKILVRNIPFQA 697
+A K L+N L + L + SE T + K+ + + ++++RN+P+
Sbjct: 59 AQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSI 118
Query: 698 KQSE-VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
K+ + +E F FG+++ +++P K G G GF FV + A+ AM +L T + G
Sbjct: 119 KKPQHLEPHFSKFGKVREIKIPTK--GGGRMCGFAFVWMKDRKAAEEAMNSL-NGTEIDG 175
Query: 757 RRLVLEWAEEADNVE 771
R + ++WA D E
Sbjct: 176 RPIAVDWAVSKDAFE 190
Score = 191 (72.3 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
Identities = 53/186 (28%), Positives = 91/186 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FVRNL++ +DDLT F GP+ ++ + ET + +G+ VTF M E A +A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYR 458
GR+L L P++ VD + K A + + ++ ++++NLP+
Sbjct: 67 KNKKLHGRILRLDFATPRKRS-EVD------TDQNK--AVKKTIRQDNRPRLIIRNLPWS 117
Query: 459 TL-PTDLKALFEPFGDLGRVLVPPYG---ITGLVEFLQKNQ--AKAAFNSLAYTKFKEVP 512
P L+ F FG + + +P G + G K++ A+ A NSL T+ P
Sbjct: 118 IKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRP 177
Query: 513 LYLEWA 518
+ ++WA
Sbjct: 178 IAVDWA 183
Score = 96 (38.9 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF-YTRE 638
+ T++++NL F TE + HF++ GP+A + KDP + S+G GF++F Y ++
Sbjct: 276 EDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLV--KDPATDR---SLGRGFIKFRYEKD 330
Query: 639 SLN 641
N
Sbjct: 331 CQN 333
Score = 90 (36.7 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
+FVRNL + TE +L F ++GPLA L D TD++ G + F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 80 (33.2 bits), Expect = 4.5e-08, Sum P(4) = 4.5e-08
Identities = 51/193 (26%), Positives = 82/193 (42%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRTT-----FLGMAYIGF---KDEKNCNKA 274
T+ V+NL K+ DL +F P+ A V T G ++ F +D + K
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 275 LNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIA 334
L KNK G+ L + ++ K S D N A + I+ +D+
Sbjct: 66 L-KNKKL-HGRILRL-DFATPR--KRSEVDTDQNKAVKKTIR-------QDN-------- 105
Query: 335 ESGRIFVRNLSYTVTEDD-LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
R+ +RNL +++ + L F K+G + E+ +P K + GFA V + A +
Sbjct: 106 -RPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEE 163
Query: 394 AYQHLDGTVFLGR 406
A L+GT GR
Sbjct: 164 AMNSLNGTEIDGR 176
Score = 79 (32.9 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
Identities = 30/139 (21%), Positives = 69/139 (49%)
Query: 638 ESLNQALKVLQNSS---LDEHQIELKRSNRNLESEATTVK-RKSSNVAKQTGSKILVRNI 693
+S+ Q K+L+ + L +++ ++ +R+++ + + R++ SK L NI
Sbjct: 442 QSIAQRKKLLEKNPTLHLSLNRLSIRNISRHIDPKILAMLGRQAIRGFMDDVSKGLRANI 501
Query: 694 PFQAKQSEVEELFK---AFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
+ + + K + G LK ++ + G+G +GFGF++FI+ A A++ L
Sbjct: 502 TEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWL-N 560
Query: 751 STHLYGRRLV---LEWAEE 766
+ ++++ +EWA +
Sbjct: 561 GREITVKKIIDAEIEWARK 579
Score = 72 (30.4 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
+ VRN+ F+ + E+ F+ FG L + +L K + G GF++F + + + ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPA-TDRSLGRGFIKFRYEKDCQNCLEM 337
Query: 748 LCQ 750
Q
Sbjct: 338 ASQ 340
Score = 66 (28.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 28/128 (21%), Positives = 54/128 (42%)
Query: 586 KNLNFNSTEDSI---RRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
K L N TE+ + H K G V K + + G S G+GF+QF + +
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALM 554
Query: 643 ALKVLQNSSLDEHQI---ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
AL+ L + +I E++ + ++ E ++ ++ + + NI ++
Sbjct: 555 ALRWLNGREITVKKIIDAEIEWARKHKIPEPQLPNIDYNDRPRRLIVEFAIENIQVVKRR 614
Query: 700 SEVEELFK 707
E E+ F+
Sbjct: 615 QEKEKSFR 622
Score = 59 (25.8 bits), Expect = 4.9e-06, Sum P(4) = 4.9e-06
Identities = 24/120 (20%), Positives = 54/120 (45%)
Query: 186 HADISDMEYLKLKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKK-KDLKAY 244
H I +++ + +S+ + +V K + + ++++NLP +KK + L+ +
Sbjct: 72 HGRILRLDFATPRKRSEVDTDQNKAV----KKTIRQDNRPRLIIRNLPWSIKKPQHLEPH 127
Query: 245 FKPL-PLASVRTT------FLGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNI-YKYSKD 295
F + ++ G A++ KD K +A+N N + G+ + + + SKD
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
Score = 56 (24.8 bits), Expect = 9.5e-06, Sum P(4) = 9.5e-06
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91
+ L+ F + G V ++++ G+ FAF+ A+ A++ N T + I V+
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(4) = 2.3e-05
Identities = 22/79 (27%), Positives = 31/79 (39%)
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLV---PPYGIT---GLVEFLQKNQAKAA 499
S + V+NL ++T DL F G + +V P G G V F A+ A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 500 FNSLAYTKFKEVPLYLEWA 518
L K L L++A
Sbjct: 63 AKELKNKKLHGRILRLDFA 81
Score = 47 (21.6 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 638 ESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAK 682
+S Q K L+ DE ++ KRS ++E K K + VA+
Sbjct: 619 KSFRQKAKQLKQQE-DEDNLKRKRSESDVEDNEA--KEKQAKVAR 660
Score = 44 (20.5 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 753 HLYGRRLVLEWAEEADNVEDI 773
H G+ L E EE NV+D+
Sbjct: 232 HSEGKELAGESEEEGSNVDDV 252
Score = 40 (19.1 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 757 RRLVLEWAEEADNVEDIRKRTNR 779
RRL++E+A E N++ +++R +
Sbjct: 597 RRLIVEFAIE--NIQVVKRRQEK 617
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 189 (71.6 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 52/192 (27%), Positives = 94/192 (48%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T LY+KN+N +T++ + F K GPI S ++ + D K G +GFV + E
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG------FGFVNYEKHEDA 272
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A++ L +S L+ ++ + R+ + E K+ + +AK G + V+N+
Sbjct: 273 VKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDS 332
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++EE F +G + ++ + +G +GFGFV F T EA +A+ Q + G
Sbjct: 333 VDDEKLEEEFAPYGTITSAKVMR--TENGKSKGFGFVCFSTPEEATKAITEKNQQI-VAG 389
Query: 757 RRLVLEWAEEAD 768
+ L + A+ D
Sbjct: 390 KPLYVAIAQRKD 401
Score = 142 (55.0 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 61/244 (25%), Positives = 108/244 (44%)
Query: 283 KGKQLNIYKYSKDNSAKYSGAADDNNNASM---ENIKAKHWKSQEDSVQFAEDIAESGRI 339
K K + ++ +AK A D N + E A H +E Q E A +
Sbjct: 164 KSKGFGFVHFEEEGAAKE--AIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNL 221
Query: 340 FVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETD-KTKGFALVTFLMPEHATQAYQHL 398
+V+N++ T++ +LF K+GP+ L +K+ D K KGF V + E A +A + L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASL--EKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 399 DGTVFLGRMLHLIPGKP-KENEGNVDGKVHCCISERKLDAFNQVVEARSKRI-ILVKNLP 456
+ + G L++ G+ K+NE ++H + +++ +A+ A+ + + + VKNL
Sbjct: 280 NDSELNGEKLYV--GRAQKKNE-----RMH--VLKKQYEAYRLEKMAKYQGVNLFVKNLD 330
Query: 457 YRTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEV 511
L+ F P+G + +V+ G + G V F +A A
Sbjct: 331 DSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 390
Query: 512 PLYL 515
PLY+
Sbjct: 391 PLYV 394
Score = 139 (54.0 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 54/203 (26%), Positives = 93/203 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S +A ++ KS G +GFV F + +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKG------FGFVHFEEEGAAKE 181
Query: 643 ALKVLQNSSLDEHQI----ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
A+ L L+ +I L R R+ + E T K +N + V+NI +
Sbjct: 182 AIDALNGMLLNGQEIYVAPHLSRKERDSQLEET--KAHYTN--------LYVKNINSETT 231
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758
+ +ELF FG + L K G +GFGFV + +A +A++AL S L G +
Sbjct: 232 DEQFQELFAKFGPIVSASLEKD--ADGKLKGFGFVNYEKHEDAVKAVEALNDS-ELNGEK 288
Query: 759 LVLEWAEEA-DNVEDIRKRTNRY 780
L + A++ + + ++K+ Y
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAY 311
Score = 97 (39.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 37/157 (23%), Positives = 71/157 (45%)
Query: 306 DNNNASMENIKAKHWKSQEDSVQFAEDIAESGR-IFVRNLSYTVTEDDLTKLFEKYGPLA 364
D +EN+ + + Q + ++ + S ++V +L +V+E L +F G ++
Sbjct: 6 DKTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVS 65
Query: 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI-----PGKPKENE 419
+ + D T + G+A V F E +A + L+ T GR+ ++ P K+
Sbjct: 66 SIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGS 125
Query: 420 GNVDGK-VHCCISERKL-DAFNQVVEARSKRIILVKN 454
GN+ K +H I + L D F+ + S +I +N
Sbjct: 126 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN 162
Score = 93 (37.8 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 27/94 (28%), Positives = 44/94 (46%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
SG IF++NL + L F +G + + D E K+KGF V F A +A
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAI 183
Query: 396 QHLDGTVFLGRMLHLIPG-KPKENEGNVDG-KVH 427
L+G + G+ +++ P KE + ++ K H
Sbjct: 184 DALNGMLLNGQEIYVAPHLSRKERDSQLEETKAH 217
Score = 67 (28.6 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRT-------TFLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P+ ++S+R T LG AY+ F D + KA+ +
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N + KG+ I +D S + G+ +
Sbjct: 99 LNYTPIKGRLCRIMWSQRDPSLRKKGSGN 127
Score = 56 (24.8 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ GK + F F+ + E A+ A+D N + I
Sbjct: 137 IDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Query: 89 KV 90
V
Sbjct: 197 YV 198
Score = 43 (20.2 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 450 ILVKNLPYRTLPTDLKALFEPF---GDL--GRVLVPPYGIT---GLVEFLQKNQAKAAFN 501
I +KNL + + D KAL++ F GD+ ++ G + G V F ++ AK A +
Sbjct: 128 IFIKNL-HPDI--DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 184
Query: 502 SL 503
+L
Sbjct: 185 AL 186
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 190 (71.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 69/309 (22%), Positives = 131/309 (42%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASV------RTTFLGMAYIGFKDEKNCNKALNKN 278
T+ V+ LP + L F + PL + G Y+ F E + +AL +
Sbjct: 5 TLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV 64
Query: 279 KSFWKGKQ-LNIYKYSKDNSAKYSGAADDNNNASMENI-KAKHWKSQEDSVQFAEDIAES 336
K + K + + K D+ + A + ++ E K+ K+ E+ + E+
Sbjct: 65 KLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEE-IPSPTKKKEN 123
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G + +RNLS+ +D+L ++F K+G + E +P+ K K KGFA V F A +A
Sbjct: 124 GWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPL-KPDGKKKGFAFVQFKCVSEAEKARA 182
Query: 397 HLDGTVFLGRMLHL--IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKN 454
++ R + + + + + H + F + + + K ++++N
Sbjct: 183 AMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRN 242
Query: 455 LPYRTLPTDLKALFEPFGDLGRVLVP--PYGIT---GLVEFLQKNQAKAAFNSLAYTKFK 509
L ++ DLK +F FG + +P P G V F + +A A ++ K K
Sbjct: 243 LSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIK 302
Query: 510 EVPLYLEWA 518
+ + ++WA
Sbjct: 303 DRQVAVDWA 311
Score = 185 (70.2 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 51/199 (25%), Positives = 94/199 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L I+NL+F +D +++ F K G + + K D K G + FVQF +
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKG------FAFVQFKCVSEAEK 179
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLES------------EATTVKRKSSNVAK-QTGSKIL 689
A + ++ + +E+ + N ES E TT K + K + S+++
Sbjct: 180 ARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLI 239
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
+RN+ F+ ++ +++++F FG + ++P K G RGF FV F EA +A+ A+
Sbjct: 240 IRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKP--DGKKRGFAFVLFKRMPEAGKALTAM- 296
Query: 750 QSTHLYGRRLVLEWAEEAD 768
+ R++ ++WA D
Sbjct: 297 NGKKIKDRQVAVDWAIAKD 315
Score = 134 (52.2 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 50/192 (26%), Positives = 85/192 (44%)
Query: 217 APVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFL------GMAYIGFKDEK 269
+P K++ ++++NL + +LK F + R G A++ FK
Sbjct: 116 SPTKKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFK--- 172
Query: 270 NCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQF 329
C K ++ K + D + + +AD + E KA+ S E +
Sbjct: 173 -CVSEAEKARAAMNRKAIRDRPVEVDWTTSNTESADPEDTE--EPHKAEETTSTE-KFKG 228
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL-MP 388
I R+ +RNLS+ EDDL ++F ++G + E +P+ K K +GFA V F MP
Sbjct: 229 IRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPL-KPDGKKRGFAFVLFKRMP 287
Query: 389 EHATQAYQHLDG 400
E A +A ++G
Sbjct: 288 E-AGKALTAMNG 298
Score = 130 (50.8 bits), Expect = 0.00014, P = 0.00014
Identities = 45/197 (22%), Positives = 90/197 (45%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG---QFLSM------GYGFV 632
TL+++ L ++ + + F + GP+ + V K+ K G SM V
Sbjct: 5 TLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV 64
Query: 633 QFYTRESL--NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK--- 687
+ Y + + A K L + ++ K S ES+ + + + + T K
Sbjct: 65 KLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKKENG 124
Query: 688 -ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+++RN+ F+ + E++++F FG + R+P K G +GF FV+F +EA++A
Sbjct: 125 WLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKP--DGKKKGFAFVQFKCVSEAEKARA 182
Query: 747 ALCQSTHLYGRRLVLEW 763
A+ + + R + ++W
Sbjct: 183 AMNRKA-IRDRPVEVDW 198
Score = 113 (44.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 34/126 (26%), Positives = 59/126 (46%)
Query: 667 ESEATTVKRKSSNVAKQT---GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 723
+SE T +K N G I +RN+ F +++ +EE+ FGEL +VR+
Sbjct: 417 DSEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNP-D 475
Query: 724 SGLHRGFGFVEFITKNEAKRAMKALCQSTH-----LYGRRLVLEWAEEADNVEDIR-KRT 777
+G+ +G F +F +K A++ + A L GRRL + A D+ + K+
Sbjct: 476 TGVSKGCAFAQFKSKEAAEKCIAAALDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKV 535
Query: 778 NRYFGT 783
+ G+
Sbjct: 536 KTHTGS 541
Score = 100 (40.3 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K ++ LK F E GTV + ++ +GK R FAF+ + R +A AL N +
Sbjct: 245 FKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKDR 304
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPT 146
++ V+ K K + + ++ K N+ K + + + KD+K SK +
Sbjct: 305 QVAVDWA-----IAKDKYLATQSASAAGNIKEENVTGKVE-EADENKDAKKKSISKKSDS 358
Query: 147 FSD 149
D
Sbjct: 359 SED 361
Score = 93 (37.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 28/102 (27%), Positives = 51/102 (50%)
Query: 305 DDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA 364
DD+++ ++ + K S++ D+ E IF+RNLS+ E+ L ++ ++G L+
Sbjct: 408 DDDDDDDDDDSEGKT-PSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELS 466
Query: 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQH-LDGTVFLG 405
V + ++ +T +KG A F E A + LD F G
Sbjct: 467 YVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAALDEKEFSG 508
Score = 88 (36.0 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 41/151 (27%), Positives = 66/151 (43%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+ + + G ++ V V D G +S G F QF ++E+
Sbjct: 440 TIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDT---G--VSKGCAFAQFKSKEAAE 494
Query: 642 QALKVLQNSSLDEHQIE-LKRSNRNLE-----SEATTVKRKSSNVAKQTGSK--ILVRNI 693
+ + ++LDE + +K R L + K K V TGS+ L R
Sbjct: 495 KCIA----AALDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKVKTHTGSRNLYLAREG 550
Query: 694 PFQAKQSEVEELFKA-------FGELKFVRL 717
+A E + +A F ELK RL
Sbjct: 551 LIRAGTKAAEGISEADIAKRTRFEELKRARL 581
Score = 78 (32.5 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/97 (20%), Positives = 48/97 (49%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K ++LK F + GTV + ++ +GK + FAF+ + +A+ A N +
Sbjct: 133 FKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDR 192
Query: 87 RIKVEKCSNLGDTTKPKSWSK--YAPDSSAYQKLHNI 121
++V+ ++ ++ P+ + A ++++ +K I
Sbjct: 193 PVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGI 229
Score = 67 (28.6 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 615 KKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNS 650
KK K S+GYGFV+F E QAL+ L N+
Sbjct: 631 KKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNN 666
Score = 65 (27.9 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 29/114 (25%), Positives = 50/114 (43%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD---YFNNTYVFSS 86
+ E L F E G + + + E K R F ++ + ED AQ AL +++ +F
Sbjct: 16 SNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVKLYDDQKIF-- 73
Query: 87 RIKVEKCSNLGDTTKPKS--WSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG 138
+ V K L D + K+ +K + D+ QK +++ P TK + G
Sbjct: 74 -VTVAK-KKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEI-PSPTKKKENG 124
Score = 61 (26.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 662 SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRL---- 717
+ R E + K NV +++ V N+P ++++ L + K VR+
Sbjct: 568 AKRTRFEELKRARLKDINVYVSK-TRLCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIECR 626
Query: 718 ---PKKMV-GS--GLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEWAEE 766
KK V G G G+GFVEF A +A++ L + ++G +R ++E++ E
Sbjct: 627 IMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGPQKRPIVEFSLE 683
Score = 51 (23.0 bits), Expect = 5.2e-10, Sum P(4) = 5.2e-10
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLV---PPYGITGLVEFLQKNQAKAAFNSLA 504
R I ++NL + + L+ + FG+L V V P G++ F Q +AA +A
Sbjct: 439 RTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIA 498
Score = 47 (21.6 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 27/106 (25%), Positives = 41/106 (38%)
Query: 233 PAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNC-NKALNKNKSFWKGKQLNIYK 291
P G K+ FK +P A T + I KD + + A+ K+K
Sbjct: 271 PDGKKRGFAFVLFKRMPEAGKALTAMNGKKI--KDRQVAVDWAIAKDKYLATQSASAAGN 328
Query: 292 YSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG 337
++N AD+N +A ++I K S ED +D SG
Sbjct: 329 IKEENVTGKVEEADENKDAKKKSISKKS-DSSEDEDDDDDDDDSSG 373
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 197 (74.4 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 55/193 (28%), Positives = 98/193 (50%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KN++ N +E+S + F G I S+ + + +D KS G +GFV F ES
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKG------FGFVNFEDHESA 286
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A++ L + ++ +I + R+ + E K+ + +AK G + V+N+
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDT 346
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
++EE FK FG + ++ MV +G +GFGFV F T EA +A+ + + +
Sbjct: 347 IDSEKLEEEFKPFGTITSAKV---MVDEAGKSKGFGFVCFTTPEEATKAITEM-NTRMIN 402
Query: 756 GRRLVLEWAEEAD 768
G+ L + A+ D
Sbjct: 403 GKPLYVALAQRKD 415
Score = 152 (58.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 73/321 (22%), Positives = 133/321 (41%)
Query: 208 DPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKD 267
+ ++ ++ P+ R + + P+ + D + K L A + L + F
Sbjct: 107 EKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPA-IDNKALHDTFSAFGK 165
Query: 268 EKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIK----AKHWKSQ 323
+C A ++ F + K Y +A+ AA +N N + N + KH +
Sbjct: 166 ILSCKVATDE---FGQSKCFGFVHYETAEAAE---AAIENVNGMLLNDREVFVGKHISKK 219
Query: 324 EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALV 383
+ +F E A I+V+N+ +E+ KLF +G + + L D++ K+KGF V
Sbjct: 220 DRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFV 278
Query: 384 TFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVE 443
F E A +A + L+ G+ +++ + K K + + KL + V
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVN- 337
Query: 444 ARSKRIILVKNLPYRTLPTD-LKALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAK 497
+ VKNL T+ ++ L+ F+PFG + +V+V G + G V F +A
Sbjct: 338 ------LFVKNLD-DTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEAT 390
Query: 498 AAFNSLAYTKFKEVPLYLEWA 518
A + PLY+ A
Sbjct: 391 KAITEMNTRMINGKPLYVALA 411
Score = 148 (57.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 51/200 (25%), Positives = 97/200 (48%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D ++IKNL+ ++ F G I S VA + GQ S +GFV + T E+
Sbjct: 139 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF----GQ--SKCFGFVHYETAEA 192
Query: 640 LNQALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697
A++ + L++ ++ + + S ++ ES+ +K +N I V+NI
Sbjct: 193 AEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN--------IYVKNIDLNY 244
Query: 698 KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ E+LF FG++ + L K G +GFGFV F A +A++ L + G+
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQDGKS--KGFGFVNFEDHESAVKAVEEL-NDKEINGQ 301
Query: 758 RLVLEWAEEA-DNVEDIRKR 776
++ + A++ + +E+++K+
Sbjct: 302 KIYVGRAQKKRERLEELKKQ 321
Score = 128 (50.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 46/205 (22%), Positives = 91/205 (44%)
Query: 215 SKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKA 274
SK K + I VKN+ ++ + F P + + +L KD+ +K
Sbjct: 223 SKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPF--GKITSIYLE------KDQDGKSKG 274
Query: 275 LNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIA 334
++ + + + N + +G A + + + K Q ++V+ E +A
Sbjct: 275 FGFVN--FEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRL-EKLA 331
Query: 335 E-SG-RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+ G +FV+NL T+ + L + F+ +G + + +D E K+KGF V F PE AT
Sbjct: 332 KYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEAT 390
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKE 417
+A ++ + G+ L++ + K+
Sbjct: 391 KAITEMNTRMINGKPLYVALAQRKD 415
Score = 86 (35.3 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 34/146 (23%), Positives = 68/146 (46%)
Query: 302 GAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE-SGRIFVRNLSYTVTEDDLTKLFEKY 360
G+ + +A+ A +S E+ + + +AE S ++V L+ +V E L ++F
Sbjct: 19 GSTTEEQSAAAATTTAD--QSAEEQGE-SSGVAENSASLYVGELNPSVNEATLFEIFSPI 75
Query: 361 GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI-----PGKP 415
G ++ + + D + K+ G+A V + E +A + L+ GR ++ P
Sbjct: 76 GQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSAR 135
Query: 416 KENEGNVDGK-VHCCISERKL-DAFN 439
+ +GN+ K +H I + L D F+
Sbjct: 136 RSGDGNIFIKNLHPAIDNKALHDTFS 161
Score = 54 (24.1 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 38 FEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNL 96
F G V+ +++ + K +A++ YH+ + + A++ N Y + I+ C +
Sbjct: 72 FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELN--Y---NPIEGRPCRIM 126
Query: 97 GDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGK 139
P + + + D + + K N+ P D K H S GK
Sbjct: 127 WSQRDPSA--RRSGDGNIFIK--NLHPAIDNKALHDTFSAFGK 165
Score = 51 (23.0 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ G+ + F F+ Y + A+AA++ N + +
Sbjct: 151 IDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210
Query: 89 KVEK 92
V K
Sbjct: 211 FVGK 214
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 183 (69.5 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 51/198 (25%), Positives = 98/198 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L ++ + + F + GP+ V +K K+ G+G+V F E +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKA-----CRGFGYVTFSMVEDVQ 59
Query: 642 QALKVLQ-------NSSLDEHQIELKRSNR----NLESEATTVKRKSSNVAKQTGSKILV 690
+ALK + N ++ + ++ K + N ES +K K + VA + +++++
Sbjct: 60 RALKEITTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKK-ARLII 118
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
RN+ F+ + +++ +F FG + V +P+K G RGF FV+F EA +A+K +
Sbjct: 119 RNLSFKCSEDDLKTVFSQFGTILEVNIPRKP--DGKMRGFAFVQFKNLLEAGKALKGM-N 175
Query: 751 STHLYGRRLVLEWAEEAD 768
+ GR + ++WA D
Sbjct: 176 MKEIKGRTVAVDWAVAKD 193
Score = 157 (60.3 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 52/187 (27%), Positives = 88/187 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV L + + L +LF + GP+ + + +K + +GF VTF M E +A + +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 399 DGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCIS-ERKLDAFNQVVEARSKRIILVKNLP 456
T F G +++ K K N+ GK S E++L V + R+I ++NL
Sbjct: 66 --TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLI-IRNLS 122
Query: 457 YRTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQ-KN--QAKAAFNSLAYTKFKEV 511
++ DLK +F FG + V +P P G F+Q KN +A A + + K
Sbjct: 123 FKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 512 PLYLEWA 518
+ ++WA
Sbjct: 183 TVAVDWA 189
Score = 133 (51.9 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRT-----TFLGMAYIGFKDEKNCNKALNK 277
T+ V LP + + L+ F P+ V T G Y+ F ++ +AL +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKE 64
Query: 278 NKSFWKGKQLN--IYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+F +G ++N I K N +K G +++ + E +K K K + +
Sbjct: 65 ITTF-EGCKINVTIAKKKLRNKSKEKGKTENSESPEKE-LKPKKAKVAD----------K 112
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
R+ +RNLS+ +EDDL +F ++G + EV +P K K +GFA V F A +A
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIP-RKPDGKMRGFAFVQFKNLLEAGKAL 171
Query: 396 QHLDGTVFLGR 406
+ ++ GR
Sbjct: 172 KGMNMKEIKGR 182
Score = 121 (47.7 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 39/154 (25%), Positives = 77/154 (50%)
Query: 637 RESLNQALKVLQNSSLDEHQIELKRSNRNLE-SEATTVKRKSSNVAKQTGSKILVRNIPF 695
R+S++ + Q+ + E Q E ++E S+ KRK + + G + +RN+ F
Sbjct: 288 RDSIDGGEDLAQSDTSSEEQEE-----EDIEVSKKKRKKRKLPSDVNE-GKTVFIRNLSF 341
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-- 753
+++ ++ EL + FG+LK+VR+ + +G F +F+T+ A++ ++A
Sbjct: 342 DSEEEDLGELLQQFGDLKYVRIVLHP-DTEHSKGCAFAQFMTQEAAQKCLEAASPEAEGG 400
Query: 754 ---LYGRRLVLEWAEEADNVEDIR-KRTNRYFGT 783
L GR+L ++ A D +R K+ + GT
Sbjct: 401 GLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGT 434
Score = 114 (45.2 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 303 AADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP 362
A D ++ E + K + + D+ E +F+RNLS+ E+DL +L +++G
Sbjct: 298 AQSDTSSEEQEEEDIEVSKKKRKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGD 357
Query: 363 LAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
L V + + +T+ +KG A F+ E A + +
Sbjct: 358 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLE 391
Score = 104 (41.7 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 43/186 (23%), Positives = 77/186 (41%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K +++ LK F + GT+ +V + +GK R FAF+ + +A AL N +
Sbjct: 123 FKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPK-QDLKPEHTKDSKPGKKSKNDP 145
+ V+ + D K + S PD +K P+ Q+L E+ ++ + ++ +N+
Sbjct: 183 TVAVD-WAVAKDKYK-STQSASIPDYEGEEKRPE--PEHQELDQENGREEEDMEEGENES 238
Query: 146 TFSDFLQLHGKDVSKLLPLXXXXXXXXXXXXXXXXXXQIAHADI-SDMEYLKLKTKSKDT 204
+ D + +D LP H+D SD+E +D
Sbjct: 239 DYDDDEE-EEEDKESKLPKSVQIHKRAVKRPAPAESSDEEHSDDDSDLEERDSIDGGEDL 297
Query: 205 APSDPS 210
A SD S
Sbjct: 298 AQSDTS 303
Score = 91 (37.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 33/113 (29%), Positives = 56/113 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+ + ++ G + V + D + S G F QF T+E+
Sbjct: 333 TVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEH-----SKGCAFAQFMTQEA-- 385
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESE-ATT----VKRKSSNVAKQTGSKIL 689
A K L+ +S + LK R L+ + A T K ++ V K TG++ L
Sbjct: 386 -AQKCLEAASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGTRNL 437
Score = 73 (30.8 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 34/154 (22%), Positives = 65/154 (42%)
Query: 196 KLKTKSKDTAPSDPSVPPVS-----KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-P 249
KL+ KSK+ ++ S P KA V ++ ++++NL + DLK F
Sbjct: 81 KLRNKSKEKGKTENSESPEKELKPKKAKVADKKAR-LIIRNLSFKCSEDDLKTVFSQFGT 139
Query: 250 LASVRTT------FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNI-YKYSKDNSAKYS 301
+ V G A++ FK+ KAL N KG+ + + + +KD
Sbjct: 140 ILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKSTQ 199
Query: 302 GAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
A+ + + + +H + +++ + ED+ E
Sbjct: 200 SASIPDYEGEEKRPEPEHQELDQENGREEEDMEE 233
Score = 56 (24.8 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 38/179 (21%), Positives = 67/179 (37%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
++ L NST K+C + + A K GQ S+GY F +F E AL
Sbjct: 500 LRKLLLNSTRGEKAVRIKECRVMRDLKGAYGK---IKGQ--SLGYAFAEFQEHEHALAAL 554
Query: 645 KVLQNS-SLDEHQ----IELK-RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAK 698
+ + N+ + Q +E R L+ + ++R V + G+ + P K
Sbjct: 555 RHINNNPEIFGPQKRPIVEFSLEDRRKLKVKELRIQRSQQKVKSKPGTGEPQQVPPEPGK 614
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLH-RGF---GFVEFITKNEAKRAMKALCQSTH 753
+ + + E + +K + GF VE + + K+ K L +H
Sbjct: 615 KQQQKAAQNHMQEQSQASVRQKGTADSVSWAGFQTKAEVEHVELPDGKKRRKVLALPSH 673
Score = 53 (23.7 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 430 ISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPP 481
+S++K + + + ++NL + + DL L + FGDL R+++ P
Sbjct: 314 VSKKKRKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHP 367
Score = 51 (23.0 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 22/106 (20%), Positives = 48/106 (45%)
Query: 674 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELF--KAFGE----LKFVRLPKKMVGS--- 724
K K N+ +++ + N+P ++ +L GE +K R+ + + G+
Sbjct: 473 KLKDQNIFVSR-TRLCLHNLPKAVDDKQLRKLLLNSTRGEKAVRIKECRVMRDLKGAYGK 531
Query: 725 --GLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEWAEE 766
G G+ F EF A A++ + + ++G +R ++E++ E
Sbjct: 532 IKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQKRPIVEFSLE 577
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 196 (74.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 53/202 (26%), Positives = 100/202 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L ++ D + F + GP+ V +K K+ G+G+V F E +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKA-----CRGFGYVTFSMLEDVQ 59
Query: 642 QALKVLQ-------NSSLDEHQIELK----RSNRNLESEATTVKRKSSNVAKQTGSKILV 690
+ALK + N ++ + +++ K R N N ES K K + VA + +++++
Sbjct: 60 RALKEITTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADKK-ARLII 118
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
RN+ F+ + +++ +F +G + V +P+K G RGF F++F EA +A+K
Sbjct: 119 RNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP--DGKMRGFAFIQFKNLLEAGKALKG-AN 175
Query: 751 STHLYGRRLVLEWAEEADNVED 772
+ GR + ++WA D +D
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKD 197
Score = 150 (57.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 50/187 (26%), Positives = 88/187 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV L + D L +LF + GP+ + + +K + +GF VTF M E +A + +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 399 DGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
T F G +++ K K +N+ K S +K + A K ++++NL +
Sbjct: 66 --TTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADKKARLIIRNLSF 123
Query: 458 RTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQ-KNQAKAAFNSLAYTKFKEVP-- 512
+ DLK++F +G + V +P P G F+Q KN +A +L KE+
Sbjct: 124 KCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAG-KALKGANMKEIKGR 182
Query: 513 -LYLEWA 518
+ ++WA
Sbjct: 183 TVAVDWA 189
Score = 131 (51.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 46/168 (27%), Positives = 76/168 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRT-----TFLGMAYIGFKDEKNCNKALNK 277
T+ V LP + L+ F P+ V T G Y+ F ++ +AL +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 278 NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG 337
+F +G ++N+ +K S N N+ + KH K++ A+ +
Sbjct: 65 ITTF-EGCKINV-TIAKKKLKNKSKETRKNENSESPKKEPKHKKAK-----VAD---KKA 114
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
R+ +RNLS+ +EDDL +F YG + EV +P K K +GFA + F
Sbjct: 115 RLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIP-RKPDGKMRGFAFIQF 161
Score = 119 (46.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 36/144 (25%), Positives = 68/144 (47%)
Query: 649 NSSLDEHQIELKRSNRNLESEATTV-KRKSSNVAKQT--GSKILVRNIPFQAKQSEVEEL 705
+SS + + S LE E V K+K + G + +RN+ F +++ + E+
Sbjct: 289 SSSYGDGTAHSESSTEELEDEDVPVSKKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEV 348
Query: 706 FKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-----LYGRRLV 760
+ FG+LK+VR+ + +G F +F+T+ A++ + A T L GR+L
Sbjct: 349 LQQFGDLKYVRIVLHP-DTEHSKGCAFAQFVTQEAAQKCLAAASPETEGGGLKLDGRQLK 407
Query: 761 LEWAEEADNVEDIR-KRTNRYFGT 783
++ A D ++ K+ + GT
Sbjct: 408 VDLAVTRDEAAKLQTKKVKKPTGT 431
Score = 113 (44.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 56/204 (27%), Positives = 92/204 (45%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+++ ++ G + V + D + S G F QF T+E+
Sbjct: 330 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEH-----SKGCAFAQFVTQEA-- 382
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESE-ATT----VKRKSSNVAKQTGSK--ILVRNIP 694
A K L +S + LK R L+ + A T K ++ V K TG++ L R
Sbjct: 383 -AQKCLAAASPETEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGTRNLYLAREGL 441
Query: 695 FQAKQSEVE----------ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
+A E E + +LK V KM G L G+ FVEF A RA
Sbjct: 442 IRAGTKAAEGVSAADMAKRERCRVMRDLKAVH--GKMKGQSL--GYAFVEFQKHEHALRA 497
Query: 745 MKALCQSTHLYG--RRLVLEWAEE 766
++ + +G +R ++E++ E
Sbjct: 498 LRHFNNNPETFGPQKRPIVEFSLE 521
Score = 104 (41.7 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 25/99 (25%), Positives = 53/99 (53%)
Query: 294 KDNSAKYSGAADDNNNASMENIKAKHWK-SQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ S+ Y G ++ +S E ++ + S++ + D+ E +F+RNLS+ E+
Sbjct: 286 EEGSSSY-GDGTAHSESSTEELEDEDVPVSKKKKRKLPSDVTEGKTVFIRNLSFDSEEEA 344
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
L ++ +++G L V + + +T+ +KG A F+ E A
Sbjct: 345 LGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAA 383
Score = 93 (37.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 41/154 (26%), Positives = 70/154 (45%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKR-----QYHTIVVKNLPAGVKKKDLKAYFKP--- 247
KLK KSK+T ++ S P K P HK+ + ++++NL + DLK+ F
Sbjct: 81 KLKNKSKETRKNENSESP-KKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGT 139
Query: 248 -LPLASVRTT---FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNI-YKYSKDNSAKYS 301
L + R G A+I FK+ KAL N KG+ + + + +KD KY
Sbjct: 140 VLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKD---KYK 196
Query: 302 GAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
A + + ++ + K +S + S + E + +
Sbjct: 197 DAQHTSVSGGKKSSERKPKESSKKSCRVEEQVED 230
Score = 85 (35.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 29/125 (23%), Positives = 54/125 (43%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K +++ LK+ F GTV +V + +GK R FAFI + +A AL N +
Sbjct: 123 FKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGR 182
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHT--KDSKPGKKSKND 144
+ V+ + D K + + + ++ + K+ + E D G+ ++D
Sbjct: 183 TVAVD-WAVAKDKYKDAQHTSVSGGKKSSERKPKESSKKSCRVEEQVEDDDDDGEDEEDD 241
Query: 145 PTFSD 149
T D
Sbjct: 242 DTQDD 246
Score = 48 (22.0 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 372 KETDKTKGFALVTFLMPEHATQAYQHLD 399
K ++ G+A V F EHA +A +H +
Sbjct: 475 KMKGQSLGYAFVEFQKHEHALRALRHFN 502
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 196 (74.1 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 53/202 (26%), Positives = 100/202 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L ++ D + F + GP+ V +K K+ G+G+V F E +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKA-----CRGFGYVTFSMLEDVQ 59
Query: 642 QALKVLQ-------NSSLDEHQIELK----RSNRNLESEATTVKRKSSNVAKQTGSKILV 690
+ALK + N ++ + +++ K R N N ES K K + VA + +++++
Sbjct: 60 RALKEITTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADKK-ARLII 118
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
RN+ F+ + +++ +F +G + V +P+K G RGF F++F EA +A+K
Sbjct: 119 RNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP--DGKMRGFAFIQFKNLLEAGKALKG-AN 175
Query: 751 STHLYGRRLVLEWAEEADNVED 772
+ GR + ++WA D +D
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKD 197
Score = 150 (57.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 50/187 (26%), Positives = 88/187 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV L + D L +LF + GP+ + + +K + +GF VTF M E +A + +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 399 DGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
T F G +++ K K +N+ K S +K + A K ++++NL +
Sbjct: 66 --TTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADKKARLIIRNLSF 123
Query: 458 RTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQ-KNQAKAAFNSLAYTKFKEVP-- 512
+ DLK++F +G + V +P P G F+Q KN +A +L KE+
Sbjct: 124 KCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAG-KALKGANMKEIKGR 182
Query: 513 -LYLEWA 518
+ ++WA
Sbjct: 183 TVAVDWA 189
Score = 131 (51.2 bits), Expect = 6.3e-11, Sum P(3) = 6.3e-11
Identities = 46/168 (27%), Positives = 76/168 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRT-----TFLGMAYIGFKDEKNCNKALNK 277
T+ V LP + L+ F P+ V T G Y+ F ++ +AL +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 278 NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG 337
+F +G ++N+ +K S N N+ + KH K++ A+ +
Sbjct: 65 ITTF-EGCKINV-TIAKKKLKNKSKETRKNENSESPKKEPKHKKAK-----VAD---KKA 114
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
R+ +RNLS+ +EDDL +F YG + EV +P K K +GFA + F
Sbjct: 115 RLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIP-RKPDGKMRGFAFIQF 161
Score = 119 (46.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 36/144 (25%), Positives = 68/144 (47%)
Query: 649 NSSLDEHQIELKRSNRNLESEATTV-KRKSSNVAKQT--GSKILVRNIPFQAKQSEVEEL 705
+SS + + S LE E V K+K + G + +RN+ F +++ + E+
Sbjct: 285 SSSYGDGTAHSESSTEELEDEDVPVSKKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEV 344
Query: 706 FKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-----LYGRRLV 760
+ FG+LK+VR+ + +G F +F+T+ A++ + A T L GR+L
Sbjct: 345 LQQFGDLKYVRIVLHP-DTEHSKGCAFAQFVTQEAAQKCLAAASPETEGGGLKLDGRQLK 403
Query: 761 LEWAEEADNVEDIR-KRTNRYFGT 783
++ A D ++ K+ + GT
Sbjct: 404 VDLAVTRDEAAKLQTKKVKKPTGT 427
Score = 104 (41.7 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 25/99 (25%), Positives = 53/99 (53%)
Query: 294 KDNSAKYSGAADDNNNASMENIKAKHWK-SQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ S+ Y G ++ +S E ++ + S++ + D+ E +F+RNLS+ E+
Sbjct: 282 EEGSSSY-GDGTAHSESSTEELEDEDVPVSKKKKRKLPSDVTEGKTVFIRNLSFDSEEEA 340
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
L ++ +++G L V + + +T+ +KG A F+ E A
Sbjct: 341 LGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAA 379
Score = 93 (37.8 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 41/154 (26%), Positives = 70/154 (45%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKR-----QYHTIVVKNLPAGVKKKDLKAYFKP--- 247
KLK KSK+T ++ S P K P HK+ + ++++NL + DLK+ F
Sbjct: 81 KLKNKSKETRKNENSESP-KKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGT 139
Query: 248 -LPLASVRTT---FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNI-YKYSKDNSAKYS 301
L + R G A+I FK+ KAL N KG+ + + + +KD KY
Sbjct: 140 VLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKD---KYK 196
Query: 302 GAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
A + + ++ + K +S + S + E + +
Sbjct: 197 DAQHTSVSGGKKSSERKPKESSKKSCRVEEQVED 230
Score = 88 (36.0 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 33/113 (29%), Positives = 56/113 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+++ ++ G + V + D + S G F QF T+E+
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEH-----SKGCAFAQFVTQEA-- 378
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESE-ATT----VKRKSSNVAKQTGSKIL 689
A K L +S + LK R L+ + A T K ++ V K TG++ L
Sbjct: 379 -AQKCLAAASPETEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGTRNL 430
Score = 82 (33.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 32/145 (22%), Positives = 60/145 (41%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K +++ LK+ F GTV +V + +GK R FAFI + +A AL N +
Sbjct: 123 FKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGR 182
Query: 87 RIKVE------KCSNLGDTTKP--KSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG 138
+ V+ K + T+ K S+ P S+ + +D + D++
Sbjct: 183 TVAVDWAVAKDKYKDAQHTSVSGGKKSSERKPKESSKKSCRVEEQVEDDDDDEDDDTQDD 242
Query: 139 KKSKNDPTFSDFLQLHGKDVSKLLP 163
+ D T + + + + V + P
Sbjct: 243 EDESRDSTVASPVSVRKRAVKRAAP 267
Score = 64 (27.6 bits), Expect = 5.7e-13, Sum P(3) = 5.7e-13
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 674 KRKSSNV-AKQTGSKILVRNIPFQAKQSEVEELF-KAFGELKFVRLPK------------ 719
K K+ N+ QT ++ + N+P ++ +L +A G K VR+ +
Sbjct: 466 KLKNQNIFVSQT--RLCLHNLPKSVDDKQLRKLLLQATGGEKGVRIKECRVMRDLKAVHG 523
Query: 720 KMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEWAEE 766
KM G L G+ FVEF A RA++ + +G +R ++E++ E
Sbjct: 524 KMKGQSL--GYAFVEFQKHEHALRALRHFNNNPETFGPQKRPIVEFSLE 570
Score = 53 (23.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNS 650
K GQ S+GY FV+F E +AL+ N+
Sbjct: 524 KMKGQ--SLGYAFVEFQKHEHALRALRHFNNN 553
Score = 48 (22.0 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 372 KETDKTKGFALVTFLMPEHATQAYQHLD 399
K ++ G+A V F EHA +A +H +
Sbjct: 524 KMKGQSLGYAFVEFQKHEHALRALRHFN 551
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 167 (63.8 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 52/195 (26%), Positives = 94/195 (48%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL ED +R+ F K G I+S V R + G S +GFV F E+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS----GN--SRCFGFVNFECTEAA 282
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
A++ + SL + + + R+ + E E ++ + + K G+ + ++N+
Sbjct: 283 ASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 342
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
+++E+F +G V K M+ G+ RGFGFV + EA RA+ + + +
Sbjct: 343 VDDEKLKEMFSEYGN---VTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEM--NGKMI 397
Query: 756 GRR-LVLEWAEEADN 769
GR+ L + A+ ++
Sbjct: 398 GRKPLYIALAQRKED 412
Score = 138 (53.6 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 61/277 (22%), Positives = 121/277 (43%)
Query: 251 ASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNA 310
AS+ L + F +C A++ + K ++ K+ SA+ AA D N
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDVTG---RSKGYGFVQFEKEESAQ---AAIDKLNG 198
Query: 311 SMENIK---AKHW-KSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEV 366
+ N K H+ + QE + ++V+NL + ED+L K F K+G ++
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 367 ILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKV 426
++ D ++ ++ F V F E A A + ++G + LG + + K++E + ++
Sbjct: 259 VVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNG-ISLGDDVLYVGRAQKKSER--EEEL 314
Query: 427 HCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGI 484
+ +++ F + A + +KNL LK +F +G++ +V++ P G+
Sbjct: 315 RRKFEQERINRFEKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM 370
Query: 485 T---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ G V + +A A + + PLY+ A
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 127 (49.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 43/166 (25%), Positives = 72/166 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S VA +S G YGFVQF ES
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKG------YGFVQFEKEESAQA 191
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ L +++ Q+ + R E + + N + + V+N+P + + E+
Sbjct: 192 AIDKLNGMLMNDKQVFVGHFIRRQE------RARDENTPTPRFTNVYVKNLPKEIGEDEL 245
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ F FG + + + SG R FGFV F A A++ +
Sbjct: 246 RKTFGKFGVISSAVVMRDQ--SGNSRCFGFVNFECTEAAASAVEKM 289
Score = 100 (40.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 41/200 (20%), Positives = 88/200 (44%)
Query: 223 QYHTIVVKNLPAGVKKKDLKAYFKPLPLAS----VRTTFLGMAYIGFKDEKNCNKALNKN 278
++ + VKNLP + + +L+ F + S +R GF + + C +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE-CTEAAASA 285
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGR 338
G L + Y G A + E ++ K QE +F + ++
Sbjct: 286 VEKMNGISLG-------DDVLYVGRAQKKSERE-EELRRKF--EQERINRFEK--SQGAN 333
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++++NL +V ++ L ++F +YG + + ++ + ++GF V + PE A +A +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392
Query: 399 DGTVFLGRMLHLIPGKPKEN 418
+G + + L++ + KE+
Sbjct: 393 NGKMIGRKPLYIALAQRKED 412
Score = 84 (34.6 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
++ G IF++NL ++ L + F +G + + +D T ++KG+ V F E A
Sbjct: 132 LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQ 190
Query: 393 QAYQHLDGTVFLGRML---HLIPGKPKENEGN 421
A L+G + + + H I + + + N
Sbjct: 191 AAIDKLNGMLMNDKQVFVGHFIRRQERARDEN 222
Score = 73 (30.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F GT+ ++ G+ + + F+ + +E+ AQAA+D N + ++
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Query: 89 KV 90
V
Sbjct: 207 FV 208
Score = 71 (30.1 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+KNL+ + ++ ++ F + G + S V +P Q +S G+GFV + E +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVML-----NP-QGMSRGFGFVAYSNPEEALR 387
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEA 670
AL + + + + + R + A
Sbjct: 388 ALSEMNGKMIGRKPLYIALAQRKEDRRA 415
Score = 66 (28.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/111 (23%), Positives = 50/111 (45%)
Query: 327 VQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
V A+ + ++ +L VTE L LF+ + V + D+ ++ G+A + F
Sbjct: 39 VVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFS 97
Query: 387 MPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
P A +A + L+ T R + ++ ++ + GK + I + LDA
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSN-RDPSTRLSGKGNIFI--KNLDA 145
Score = 59 (25.8 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
K+T+ L F+ V V++ + +A+I + + A A++ N T +F
Sbjct: 59 KVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRP 118
Query: 88 IKVEKCSNLGDTTK 101
I++ SN +T+
Sbjct: 119 IRI-MLSNRDPSTR 131
Score = 53 (23.7 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AYI F + + +A+ N + + + I ++D S + SG + N +AS++
Sbjct: 89 LGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASID 148
Query: 314 N 314
N
Sbjct: 149 N 149
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 173 (66.0 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 49/172 (28%), Positives = 82/172 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL ++T+D ++ F + G I S V KD G+ S G+GFV F +
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVM--KD----GEGKSKGFGFVNFENADDA 268
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVA----KQTGSKILVRNIPFQ 696
+A++ L D+ + + R+ + E E R N+ K S + V+N+
Sbjct: 269 ARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPS 328
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+++E+F FG + ++ + +G +G GFV F T EA AM L
Sbjct: 329 ISDEKLKEIFSPFGTVTSSKVMRDP--NGTSKGSGFVAFATPEEATEAMSQL 378
Score = 164 (62.8 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 50/166 (30%), Positives = 82/166 (49%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S VA S GQ S GYGFVQ+ ES +
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVA----VDSSGQ--SKGYGFVQYANEESAQK 179
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ L L++ Q+ + R E ++T K K +NV V+N+ ++
Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNV--------YVKNLAESTTDDDL 231
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ F +G++ + K G G +GFGFV F ++A RA+++L
Sbjct: 232 KNAFGEYGKITSAVVMKD--GEGKSKGFGFVNFENADDAARAVESL 275
Score = 159 (61.0 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 51/183 (27%), Positives = 88/183 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V+NL+ + T+DDL F +YG + ++ D E K+KGF V F + A +A + L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 399 DGTVFLGRMLHLIPGKP-KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
+G F + ++ G+ K++E + +V E+ L + + + VKNL
Sbjct: 276 NGHKFDDKEWYV--GRAQKKSERETELRVRY---EQNL---KEAADKFQSSNLYVKNLDP 327
Query: 458 RTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVP 512
LK +F PFG + +V+ P G + G V F +A A + L+ + P
Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKP 387
Query: 513 LYL 515
LY+
Sbjct: 388 LYV 390
Score = 136 (52.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 52/204 (25%), Positives = 96/204 (47%)
Query: 220 HKRQYHTIVVKNLPAGVKKKDLK-AY--FKPLPLASVRTTFLGMAY-IGFKDEKNCNKAL 275
+K ++ + VKNL DLK A+ + + A V G + GF + +N + A
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269
Query: 276 NKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+S LN +K+ D+ Y G A + E ++ ++ E +++ A D +
Sbjct: 270 RAVES------LNGHKF--DDKEWYVGRAQKKSERETE-LRVRY----EQNLKEAADKFQ 316
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKE-TDKTKGFALVTFLMPEHATQA 394
S ++V+NL +++++ L ++F +G + + D T K GF V F PE AT+A
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGF--VAFATPEEATEA 374
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
L G + + L++ + KE+
Sbjct: 375 MSQLSGKMIESKPLYVAIAQRKED 398
Score = 87 (35.7 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 18/77 (23%), Positives = 40/77 (51%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+G IF++NL ++ L F +G + + +D + ++KG+ V + E A +A
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 396 QHLDGTVFLGRMLHLIP 412
+ L+G + + +++ P
Sbjct: 182 EKLNGMLLNDKQVYVGP 198
Score = 87 (35.7 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+ LY+KNL+ + +++ ++ F G + S V R DP S G GFV F T E
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMR--DPNGT----SKGSGFVAFATPEEA 371
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNV 680
+A+ L ++ + + + R E ++ + S V
Sbjct: 372 TEAMSQLSGKMIESKPLYVAIAQRK-EDRRVRLQAQFSQV 410
Score = 84 (34.6 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L + VT+ L F + G + V + D T ++ G+ V F P+ A +A Q L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 399 DGTVFLGRML-----HLIPGKPKENEGNV 422
+ G+ + H P + GN+
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNI 126
Score = 56 (24.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG Y+ F + ++ +A+ + N GK + + +D S + SGA + N + S++
Sbjct: 77 LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESID 136
Query: 314 NIKAKH--WKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEK 359
+ KA H + S + V + SG+ E+ K EK
Sbjct: 137 H-KALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEK 183
Score = 48 (22.0 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 13/65 (20%), Positives = 28/65 (43%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
+ +T QL F + GTV V++ + + + ++ + A A+ N ++
Sbjct: 45 FNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYG 104
Query: 86 SRIKV 90
I+V
Sbjct: 105 KPIRV 109
Score = 40 (19.1 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 24/121 (19%), Positives = 43/121 (35%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLP-LASVRTTF------LGMAYIGFKDEKNCNKALNK-N 278
I +KNL + K L F + S + G ++ + +E++ KA+ K N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGR 338
KQ+ + + + + S A N N+ K+ E G+
Sbjct: 186 GMLLNDKQVYVGPFLR-RQERDSTA----NKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 339 I 339
I
Sbjct: 241 I 241
Score = 38 (18.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 462 TDLKALFEPFGDLGRV--------LVPPYGIT-GLVEFLQKNQAKAAFNSLAYTKFKEVP 512
TD + LF+ FG +G V LV + G V F A A L Y +P
Sbjct: 48 TDSQ-LFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNY-----IP 101
Query: 513 LY 514
LY
Sbjct: 102 LY 103
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 174 (66.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/202 (24%), Positives = 98/202 (48%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L ++ + + F + GP+ V +K K+ G+G+V F E +
Sbjct: 5 TLFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKA-----CRGFGYVTFSMLEDVQ 59
Query: 642 QALKVLQ-------NSSL----DEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILV 690
+ALK + N ++ ++ + K N N E K K VA + +++++
Sbjct: 60 RALKEITTFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVADKK-ARLII 118
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
RN+ F+ + +++ +F +G + V +P+K G RGF FV+F EA +A+K++
Sbjct: 119 RNLSFKCSEDDLKTVFGQYGAVLEVNIPRKP--DGKMRGFAFVQFKNLLEAGKALKSM-N 175
Query: 751 STHLYGRRLVLEWAEEADNVED 772
+ GR + ++WA D ++
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKN 197
Score = 147 (56.8 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 49/186 (26%), Positives = 87/186 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV L + + L +LF + GPL + + +K + +GF VTF M E +A + +
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 399 DGTVFLGRMLHLIPGKPKE-NEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
T F G +++ K K+ N+ G+ +K + A K ++++NL +
Sbjct: 66 --TTFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVADKKARLIIRNLSF 123
Query: 458 RTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQ-KN--QAKAAFNSLAYTKFKEVP 512
+ DLK +F +G + V +P P G F+Q KN +A A S+ + K
Sbjct: 124 KCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRT 183
Query: 513 LYLEWA 518
+ ++WA
Sbjct: 184 VAVDWA 189
Score = 139 (54.0 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 57/191 (29%), Positives = 91/191 (47%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRT-----TFLGMAYIGFKDEKNCNKALNK 277
T+ V LP + + L+ F PL V T G Y+ F ++ +AL +
Sbjct: 5 TLFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 278 NKSFWKGKQLN--IYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+F +G ++N I K + N +K G +N N+ E K K K ++ V A+ +
Sbjct: 65 ITTF-EGCKINVTIAKKKQRNKSKEKG---ENENS--EPPK-KEPKPKKPKV--AD---K 112
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
R+ +RNLS+ +EDDL +F +YG + EV +P K K +GFA V F A +A
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIP-RKPDGKMRGFAFVQFKNLLEAGKAL 171
Query: 396 QHLDGTVFLGR 406
+ ++ GR
Sbjct: 172 KSMNMKEIKGR 182
Score = 121 (47.7 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 36/146 (24%), Positives = 72/146 (49%)
Query: 648 QNSSLDEHQIELKRSN-RNLESEATTV-KRKSSNVAKQT--GSKILVRNIPFQAKQSEVE 703
++ S+D ++ +N E E + K+K + G + +RN+ F +++ E+
Sbjct: 285 RDDSIDGEELAQSDTNSEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEELG 344
Query: 704 ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-----LYGRR 758
EL + FG+LK+VR+ + +G F +F+T+ A++ ++A T L GR+
Sbjct: 345 ELLQQFGDLKYVRIVLHP-DTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQ 403
Query: 759 LVLEWAEEADNVEDIR-KRTNRYFGT 783
L ++ A D ++ K+ + GT
Sbjct: 404 LRVDLAVTRDEAAKLQTKKVKKPTGT 429
Score = 108 (43.1 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 303 AADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP 362
A D N+ E+ + K ++ + D+ E +F+RNLS+ E++L +L +++G
Sbjct: 295 AQSDTNSEEQEDEDMQISKKKKRKLP--SDVNEGKTVFIRNLSFDSEEEELGELLQQFGD 352
Query: 363 LAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
L V + + +T+ +KG A F+ E A + +
Sbjct: 353 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLE 386
Score = 89 (36.4 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 33/113 (29%), Positives = 55/113 (48%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+ + ++ G + V + D + S G F QF T+E+
Sbjct: 328 TVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEH-----SKGCAFAQFMTQEA-- 380
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESE-ATT----VKRKSSNVAKQTGSKIL 689
A K L+ +S + LK R L + A T K ++ V K TG++ L
Sbjct: 381 -AQKCLEAASPETEGGGLKLDGRQLRVDLAVTRDEAAKLQTKKVKKPTGTRNL 432
Score = 82 (33.9 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K +++ LK F + G V +V + +GK R FAF+ + +A AL N +
Sbjct: 123 FKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGR 182
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKND 144
+ V+ + D K + S AP + H K++ + E +D + ++ ++D
Sbjct: 183 TVAVD-WAVAKDKYK-NTQSASAPGEKRPEPKHQELSKENGREE--EDMEEEEEEEDD 236
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 35/154 (22%), Positives = 65/154 (42%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKR-----QYHTIVVKNLPAGVKKKDLKAYFKP--- 247
K + KSK+ ++ S PP K P K+ + ++++NL + DLK F
Sbjct: 81 KQRNKSKEKGENENSEPP-KKEPKPKKPKVADKKARLIIRNLSFKCSEDDLKTVFGQYGA 139
Query: 248 -LPLASVRTT---FLGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNI-YKYSKD---NSA 298
L + R G A++ FK+ KAL N KG+ + + + +KD N+
Sbjct: 140 VLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQ 199
Query: 299 KYSGAADDNNNASMENIKAKHWKSQEDSVQFAED 332
S + + + ++ + +ED + E+
Sbjct: 200 SASAPGEKRPEPKHQELSKENGREEEDMEEEEEE 233
Score = 56 (24.8 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 674 KRKSSNV-AKQTGSKILVRNIPFQAKQSEVEELF--KAFGE----LKFVRLPKKMVG--- 723
K K N+ QT ++ + N+P E+ +L GE LK R+ + + G
Sbjct: 468 KLKDQNIFVSQT--RLCLHNLPKGVDDKELRKLLLNATRGEKGVRLKECRVMRDLKGVHG 525
Query: 724 --SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEWAEE 766
G G+ F EF A A++ + + ++G +R ++E++ E
Sbjct: 526 KVKGQSLGYAFAEFQEHEHALTALRHINNNPEIFGPLKRPIVEFSLE 572
Score = 50 (22.7 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
++ L N+T K+C + + + K GQ S+GY F +F E AL
Sbjct: 495 LRKLLLNATRGEKGVRLKECRVMRDL---KGVHGKVKGQ--SLGYAFAEFQEHEHALTAL 549
Query: 645 KVLQNS 650
+ + N+
Sbjct: 550 RHINNN 555
Score = 48 (22.0 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 416 KENEGNVDGKVHC---CISERKLDAFNQVVEARSKRI---------ILVKNLPYRTLPTD 463
KE + ++DG+ SE + D Q+ + + +++ + ++NL + + +
Sbjct: 283 KERDDSIDGEELAQSDTNSEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEE 342
Query: 464 LKALFEPFGDLG--RVLVPP 481
L L + FGDL R+++ P
Sbjct: 343 LGELLQQFGDLKYVRIVLHP 362
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 197 (74.4 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 55/202 (27%), Positives = 99/202 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L ++ D + F + GP+ V +K K+ G+G+V F E +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKA-----CRGFGYVTFSMLEDVQ 59
Query: 642 QALKVL---QNSSLD----EHQIELK----RSNRNLESEATTVKRKSSNVAKQTGSKILV 690
+ALK + + +D + ++ K R N N ES K K + VA + +++++
Sbjct: 60 RALKEITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKK-ARLII 118
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
RN+ F+ + +++ +F +G + V +PKK G RGF FV+F EA +A+K
Sbjct: 119 RNLSFKCSEDDLKAVFTHYGTVLEVNIPKKP--DGKMRGFAFVQFKNLLEAGKALKG-AN 175
Query: 751 STHLYGRRLVLEWAEEADNVED 772
+ GR + ++WA D +D
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKD 197
Score = 151 (58.2 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 51/187 (27%), Positives = 86/187 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV L + D L +LF + GP+ + + +K + +GF VTF M E +A + +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 399 DGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
T F G + + K K N+ K S +K + A K ++++NL +
Sbjct: 66 --TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSF 123
Query: 458 RTLPTDLKALFEPFGDLGRVLVP--PYGITGLVEFLQ-KNQAKAAFNSLAYTKFKEVP-- 512
+ DLKA+F +G + V +P P G F+Q KN +A +L KE+
Sbjct: 124 KCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAG-KALKGANMKEIKGR 182
Query: 513 -LYLEWA 518
+ ++WA
Sbjct: 183 TVAVDWA 189
Score = 130 (50.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 47/168 (27%), Positives = 76/168 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRT-----TFLGMAYIGFKDEKNCNKALNK 277
T+ V LP + L+ F P+ V T G Y+ F ++ +AL +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 278 NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG 337
+F +G ++++ +K S N NA + KH K++ A+ +
Sbjct: 65 ITTF-EGCKIDV-TVAKKKLRNKSKETRKNENAESPKKEPKHKKAK-----VAD---KKA 114
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
R+ +RNLS+ +EDDL +F YG + EV +P K K +GFA V F
Sbjct: 115 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQF 161
Score = 116 (45.9 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 37/143 (25%), Positives = 70/143 (48%)
Query: 650 SSLDEHQIELKRSNRNLESEATTV--KRKSSNVAKQT-GSKILVRNIPFQAKQSEVEELF 706
SS DE ++ + S + E E V K+K + T G + +RN+ F +++ + E+
Sbjct: 286 SSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVL 345
Query: 707 KAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-----LYGRRLVL 761
+ FG+LK+VR+ + +G F +F+T+ A++ + A L GR+L +
Sbjct: 346 QQFGDLKYVRVVLHP-DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 404
Query: 762 EWAEEADNVEDIR-KRTNRYFGT 783
+ A D ++ K+ + GT
Sbjct: 405 DLAVTRDEAAKLQTKKVKKPTGT 427
Score = 100 (40.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 22/98 (22%), Positives = 49/98 (50%)
Query: 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDL 353
++ + Y D+ +++ + S++ + D+ E +F+RNLS+ E+ L
Sbjct: 282 EEGGSSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEAL 341
Query: 354 TKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
++ +++G L V + + +T+ +KG A F+ E A
Sbjct: 342 GEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 379
Score = 96 (38.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+++ ++ G + V V D + S G F QF T+E+
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-----SKGCAFAQFMTQEA-- 378
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESE-ATT----VKRKSSNVAKQTGSKIL 689
A K L +SL+ LK R L+ + A T K ++ V K TG++ L
Sbjct: 379 -AQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGTRNL 430
Score = 91 (37.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 34/145 (23%), Positives = 60/145 (41%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K +++ LKA F GTV +V + +GK R FAF+ + +A AL N +
Sbjct: 123 FKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGR 182
Query: 87 RIKVE------KCSNLGDTTKP--KSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG 138
+ V+ K + + P K S P S + +D E DS
Sbjct: 183 TVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDDDSHDD 242
Query: 139 KKSKNDPTFSDFLQLHGKDVSKLLP 163
++ + + T + + +H + V + P
Sbjct: 243 EEER-ESTIASPVSVHKRAVKRAAP 266
Score = 80 (33.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 38/145 (26%), Positives = 64/145 (44%)
Query: 196 KLKTKSKDTAPSDPSVPPVSKAPVHKR-----QYHTIVVKNLPAGVKKKDLKAYFKPL-P 249
KL+ KSK+T ++ + P K P HK+ + ++++NL + DLKA F
Sbjct: 81 KLRNKSKETRKNENAESP-KKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGT 139
Query: 250 LASVRTT------FLGMAYIGFKDEKNCNKALN-KNKSFWKGKQLNI-YKYSKDNSAKYS 301
+ V G A++ FK+ KAL N KG+ + + + +KD KY
Sbjct: 140 VLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKD---KYK 196
Query: 302 GAADDNNNASMENIKAKHWKSQEDS 326
D +AS +K + ++S
Sbjct: 197 ----DAQHASAPGVKKSSDRKPKES 217
Score = 61 (26.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 41/168 (24%), Positives = 74/168 (44%)
Query: 608 ASVTVARKKDPKSPGQFLSMGYGFVQFYTR--ESLNQA-LKVLQNSSLDEHQIELKRSNR 664
A + + K P G ++ T+ E ++ A + + L +HQ +LK N+
Sbjct: 414 AKLQTKKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQ-KLK--NQ 470
Query: 665 NLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE----VEELFKAFGELKFVRLPKK 720
N+ T + N+ K K L R + +A + E ++E + +LK V K
Sbjct: 471 NIFVSQTRLCLH--NLPKAVDDKQL-RKLLLEATRGEKGVRIKEC-RVMRDLKGVH--GK 524
Query: 721 MVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEWAEE 766
M G L G+ F EF A RA++ + ++G +R ++E++ E
Sbjct: 525 MKGQSL--GYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLE 570
Score = 53 (23.7 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 38/151 (25%), Positives = 60/151 (39%)
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNSS---------LDEHQIELKRSNR--NLE 667
K GQ S+GY F +F E +AL+ N+ + E +E +R + L
Sbjct: 524 KMKGQ--SLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLEDRRKLKVKELR 581
Query: 668 SEATTVKRKSSNVAK--QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725
+ + K +S V Q K + ++ + QS ++ KA GE K GS
Sbjct: 582 IQRSLQKMESKPVTSKPQKEQKEVGKDKQQKVVQSATQDQSKAPGE------QKGKAGST 635
Query: 726 LHRGF---GFVEFITKNEAKRAMKALCQSTH 753
GF VE + + K+ K L +H
Sbjct: 636 SWSGFQTKAEVEQVELPDGKKRRKVLALPSH 666
Score = 45 (20.9 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 430 ISERKLDAF-NQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPP 481
+SE+K + V E ++ + ++NL + + L + + FGDL RV++ P
Sbjct: 309 VSEKKKRKLPSDVTEGKT---VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 360
Score = 44 (20.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 372 KETDKTKGFALVTFLMPEHATQAYQHLD 399
K ++ G+A F EHA +A +H +
Sbjct: 524 KMKGQSLGYAFAEFQKHEHALRALRHFN 551
>TAIR|locus:2166359 [details] [associations]
symbol:AT5G05720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00534152
RefSeq:NP_196191.2 UniGene:At.54733 ProteinModelPortal:F4K0T3
SMR:F4K0T3 EnsemblPlants:AT5G05720.1 GeneID:830456
KEGG:ath:AT5G05720 Uniprot:F4K0T3
Length = 451
Score = 155 (59.6 bits), Expect = 6.5e-14, Sum P(3) = 6.5e-14
Identities = 45/139 (32%), Positives = 73/139 (52%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T+E+L+ F KG + DV+LK ++GK R+FA+IG+ E +AQ A+ Y N ++ + RI
Sbjct: 14 VTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRI 73
Query: 89 KVEKCSNLGDTTKPKSWSKYAPD--SSAYQKLHN-IAPKQDLKPEHTKDSKPGKKSKNDP 145
VE + D P+ K + S+AY K I K ++ P+ + K S D
Sbjct: 74 SVE----VADPP-PREEGKENTEHFSNAYAKGDKKIKKKPEVSPDGADEPNKAKISLLDS 128
Query: 146 TFSDFLQ---LHGKDVSKL 161
+ ++ L G DVS +
Sbjct: 129 KKTRKIKVVALVGDDVSDM 147
Score = 90 (36.7 bits), Expect = 6.5e-14, Sum P(3) = 6.5e-14
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 649 NSSLDEHQIELKRSNRNLESEATTV----------KRK-SSNVAKQTG-----SKILVRN 692
+ SL +H EL + + L + T V K K S V K +K+ V+N
Sbjct: 298 DESLKKHLTELVKQGKILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKN 357
Query: 693 IPFQAKQSEVEELFKAFGELKFVRLPKKMVG 723
I F+A EV +LF FG++K V LP++ G
Sbjct: 358 IAFEATMKEVRQLFTPFGQIKSVGLPERTKG 388
Score = 57 (25.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASV 610
T L++KN+ F +T +R+ F G I SV
Sbjct: 351 TKLHVKNIAFEATMKEVRQLFTPFGQIKSV 380
Score = 56 (24.8 bits), Expect = 6.5e-14, Sum P(3) = 6.5e-14
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 188 DISDMEYLKLKTKSKDTAPSD 208
D+SDMEY K +TK K+ + SD
Sbjct: 143 DVSDMEYYKSRTK-KNLSDSD 162
Score = 56 (24.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKG 379
++ V+N+++ T ++ +LF +G + V LP ++TKG
Sbjct: 352 KLHVKNIAFEATMKEVRQLFTPFGQIKSVGLP-----ERTKG 388
Score = 54 (24.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 452 VKNLPYRTLPTDLKALFEPFGDLGRVLVP 480
VKN+ + +++ LF PFG + V +P
Sbjct: 355 VKNIAFEATMKEVRQLFTPFGQIKSVGLP 383
Score = 47 (21.6 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 705 LFKAFGELKFVRLPKKMV----GSGLHRGFGFVEFITKNEAKRAM--KALCQSTHLYGR- 757
+F G+++ R+ K+ G G H+ F+E I EA + M +AL + + + G
Sbjct: 176 VFPIDGDIEADRVDKEFTIHVFGFG-HQDVVFLEPIEAREALKGMGVQALQRCSPVSGAP 234
Query: 758 RLVLEWAEEADNVE--------DIRKRTN 778
R +LE ADN E D+R+R N
Sbjct: 235 RDILEPKALADNNENTSDVEENDVRRRLN 263
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 171 (65.3 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 56/204 (27%), Positives = 99/204 (48%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL T+D + F + G ++SV V R G S G+GFV F E+
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD------GMGRSRGFGFVNFCNPENA 255
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN-VAKQT--GSKILVRNIPFQA 697
+A++ L L ++ + ++ + E ++ S N +AK S + V+N+
Sbjct: 256 KKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESM 315
Query: 698 KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
++ + E+F +G++ ++ +G +GFGFV F E+K+A + L + G+
Sbjct: 316 NETRLREIFGCYGQIVSAKV--MCHENGRSKGFGFVCFSNCEESKQAKRYL-NGFLVDGK 372
Query: 758 RLVLEWAEEADNVEDIRKRTNRYF 781
+V+ AE ED KR +YF
Sbjct: 373 PIVVRVAERK---EDRIKRLQQYF 393
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 55/231 (23%), Positives = 106/231 (45%)
Query: 244 YFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGA 303
Y K L +S+ ++ L + F +C K + +N + K ++ + SA + +
Sbjct: 115 YVKNLD-SSITSSCLERMFCPFGSILSC-KVVEENG---QSKGFGFVQFDTEQSAVSARS 169
Query: 304 ADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL 363
A + + + + ++++ A + +S ++V+NL TVT+D L LF +YG +
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGN-QDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 364 AEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD 423
+ V++ D +++GF V F PE+A +A + L G + LG L GK + + +
Sbjct: 229 SSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCG-LQLGSK-KLFVGKALKKDERRE 285
Query: 424 GKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 474
+ ++ D F R + VKNL T L+ +F +G +
Sbjct: 286 -----MLKQKFSDNFIAKPNMRWSNLY-VKNLSESMNETRLREIFGCYGQI 330
Score = 127 (49.8 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 43/151 (28%), Positives = 69/151 (45%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G+GFVQF T +S A L S + ++ + + E A + S+NV
Sbjct: 150 SKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNV----- 204
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
V+N+ + LF +G + V + + G G RGFGFV F AK+AM
Sbjct: 205 ---YVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD--GMGRSRGFGFVNFCNPENAKKAM 259
Query: 746 KALCQSTHLYGRRLVLEWAEEADNVEDIRKR 776
++LC L ++L + A + D ++ K+
Sbjct: 260 ESLC-GLQLGSKKLFVGKALKKDERREMLKQ 289
Score = 95 (38.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 40/148 (27%), Positives = 62/148 (41%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+KNL+ + T + R F G I S V + GQ S G+GFVQF T +S
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN-----GQ--SKGFGFVQFDTEQSAVS 166
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A L S + ++ + + E A + S+NV V+N+ +
Sbjct: 167 ARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNV--------YVKNLIETVTDDCL 218
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGF 730
LF +G + V + + +G GF
Sbjct: 219 HTLFSQYGTVSSVVVMRDGMGRSRGFGF 246
Score = 90 (36.7 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 30/126 (23%), Positives = 54/126 (42%)
Query: 284 GKQLNIYKYSK-DNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVR 342
GK + Y Y D+ S A N++ ++ + SQ D ++V+
Sbjct: 59 GKSM-CYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVK 117
Query: 343 NLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTV 402
NL ++T L ++F +G + + +E ++KGF V F + A A L G++
Sbjct: 118 NLDSSITSSCLERMFCPFGSILSC--KVVEENGQSKGFGFVQFDTEQSAVSARSALHGSM 175
Query: 403 FLGRML 408
G+ L
Sbjct: 176 VYGKKL 181
Score = 78 (32.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G ++V +LS VTE DL F P+ V L + T K+ +A + F P A+ A
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 397 HLDGTVFLGRMLHLI 411
L+ + G+ + ++
Sbjct: 81 RLNHSDLKGKAMRIM 95
Score = 64 (27.6 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 220 HKRQYHTIVVKNLPAGVKKKDLKAYFK-PLPLASV---RTTFLGM----AYIGFKDEKNC 271
H ++ ++ V +L V +KDL F +P+ SV R + G AYI F +
Sbjct: 16 HSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSA 75
Query: 272 NKALNK-NKSFWKGKQLNIYKYSKD 295
+ A+ + N S KGK + I +D
Sbjct: 76 SNAMTRLNHSDLKGKAMRIMWSQRD 100
Score = 51 (23.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
IT L+ F G++ ++ G+ + F F+ + E A +A + + V+ ++
Sbjct: 123 ITSSCLERMFCPFGSILSCKV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL 181
Query: 89 KVEKCSN 95
V K N
Sbjct: 182 FVAKFIN 188
Score = 45 (20.9 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 418 NEGNVDGK-VHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGD-LG 475
N ++ GK + S+R L A+ + + VKNL + L+ +F PFG L
Sbjct: 83 NHSDLKGKAMRIMWSQRDL-AYRRRTRTGFANLY-VKNLDSSITSSCLERMFCPFGSILS 140
Query: 476 RVLVPPYGIT---GLVEFLQKNQAKAAFNSL 503
+V G + G V+F + A +A ++L
Sbjct: 141 CKVVEENGQSKGFGFVQFDTEQSAVSARSAL 171
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 190 (71.9 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 53/202 (26%), Positives = 99/202 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L ++ + + F + GP+ V +K K+ G+G+V F E +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKA-----CRGFGYVTFSMLEDVQ 59
Query: 642 QALKVLQ-------NSSLDEHQIELKRS----NRNLESEATTVKRKSSNVAKQTGSKILV 690
+ALK + N ++ + ++ K N N E K K + VA + +++++
Sbjct: 60 RALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKK-ARLII 118
Query: 691 RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQ 750
RN+ F+ + +++ +F FG + V +P+K G RGFGFV+F EA +A+K +
Sbjct: 119 RNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP--DGKMRGFGFVQFKNLLEAGKALKGM-N 175
Query: 751 STHLYGRRLVLEWAEEADNVED 772
+ GR + ++WA D +D
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKD 197
Score = 151 (58.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 48/186 (25%), Positives = 84/186 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV L + + L +LF + GP+ + + +K + +GF VTF M E +A + +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 399 DGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
T F G +++ K K N+ GK +K + A K ++++NL +
Sbjct: 66 --TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSF 123
Query: 458 RTLPTDLKALFEPFGDLGRVLVP--PYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVP 512
+ DLK +F FG + V +P P G G V+F +A A + + K
Sbjct: 124 KCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 513 LYLEWA 518
+ ++WA
Sbjct: 184 VAVDWA 189
Score = 126 (49.4 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 50/191 (26%), Positives = 85/191 (44%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRT-----TFLGMAYIGFKDEKNCNKALNK 277
T+ V LP + + L+ F P+ V T G Y+ F ++ +AL +
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 278 NKSFWKGKQLNIYKYSKD--NSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+F +G ++N+ K N K G ++N+ + KAK K + +
Sbjct: 65 ITTF-EGCKINVTVAKKKLRNKTKEKGK-NENSECPKKEPKAKKAKVAD----------K 112
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
R+ +RNLS+ +EDDL +F ++G + EV +P K K +GF V F A +A
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIP-RKPDGKMRGFGFVQFKNLLEAGKAL 171
Query: 396 QHLDGTVFLGR 406
+ ++ GR
Sbjct: 172 KGMNMKEIKGR 182
Score = 114 (45.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 33/119 (27%), Positives = 63/119 (52%)
Query: 648 QNSSLDEHQIELKRSNRNLESE---ATTV----KRKSSNVAKQTGSKILVRNIPFQAKQS 700
++ S+D+ + EL +S+ + E + A V KRK + + G + +RN+ F +++
Sbjct: 292 ESDSIDDGE-ELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNE-GKTVFIRNLSFDSEEE 349
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
E+ EL + FGELK+VR+ + +G F +F+T+ A++ + A G +L
Sbjct: 350 ELGELLQQFGELKYVRIVLHP-DTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKL 407
Score = 105 (42.0 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 303 AADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP 362
A D + E+ KA S + + D+ E +F+RNLS+ E++L +L +++G
Sbjct: 303 AQSDTSTEEQED-KAVQ-VSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGE 360
Query: 363 LAEVILPIDKETDKTKGFALVTFLMPEHA 391
L V + + +T+ +KG A F+ E A
Sbjct: 361 LKYVRIVLHPDTEHSKGCAFAQFMTQEAA 389
Score = 89 (36.4 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 33/113 (29%), Positives = 56/113 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++I+NL+F+S E+ + ++ G + V + D + S G F QF T+E+
Sbjct: 336 TVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEH-----SKGCAFAQFMTQEA-- 388
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESE-ATT----VKRKSSNVAKQTGSKIL 689
A K L +S + LK R L+ + A T K +++ V K TG++ L
Sbjct: 389 -AQKCLLAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGTRNL 440
Score = 75 (31.5 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 25/123 (20%), Positives = 49/123 (39%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+K +++ LK F + G V +V + +GK R F F+ + +A AL N +
Sbjct: 123 FKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPT 146
+ V+ +S S + S ++ H + K+ + E + + +D
Sbjct: 183 TVAVDWAVAKDKYKDTQSVSAIGEEKS-HESKHQESVKKKGREEEDMEEEENDDDDDDDD 241
Query: 147 FSD 149
D
Sbjct: 242 EED 244
Score = 59 (25.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 30/138 (21%), Positives = 53/138 (38%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSS-----LDEHQIELK-RSNRNLESEATTVKRKSSN 679
S+GY F +F E +AL+++ N+ L +E R L+ + ++R
Sbjct: 539 SLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQK 598
Query: 680 VAKQTGSKILVRNIPFQAK-QSEVEELFKAFGELKFVRLPKKMVGSGLHRGF---GFVEF 735
+ + + + P AK Q + + K K+ GS GF VE
Sbjct: 599 MRSKPATGEPQKGQPEPAKDQQQKAAQHHTEEQSKVPPEQKRKAGSTSWTGFQTKAEVEQ 658
Query: 736 ITKNEAKRAMKALCQSTH 753
+ + K+ K L +H
Sbjct: 659 VELPDGKKRRKVLALPSH 676
Score = 54 (24.1 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 22/106 (20%), Positives = 49/106 (46%)
Query: 674 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAF--GE----LKFVRLPKKMVG---- 723
K K N+ +++ + N+P ++ +L + GE +K R+ + + G
Sbjct: 476 KLKDQNIFVSR-TRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGN 534
Query: 724 -SGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG--RRLVLEWAEE 766
G G+ F EF A +A++ + + ++G +R ++E++ E
Sbjct: 535 MKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLE 580
Score = 43 (20.2 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPP 481
+ + ++NL + + +L L + FG+L R+++ P
Sbjct: 335 KTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHP 370
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 158 (60.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 62/212 (29%), Positives = 93/212 (43%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T LY+KNL+ + +ED +R F + G I S+ +A KD L GY FV F E
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA--KDENR----LCRGYAFVNFDNPEDA 254
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATT---VKRKSSN---VAKQTGSKILVRNIP 694
+A + + + + + R+ + E E K K +AK S I V+N+
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKV--SNIYVKNVN 312
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGS-GLHRGFGFVEFITKNEAKRAMKALCQSTH 753
+ EEL K F + + K M G +GFGFV F T EA A+K
Sbjct: 313 VAVTE---EELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF-HGQM 368
Query: 754 LYGRRLVLEWAEEADNVEDIRKRTNRYFGTAV 785
+G+ L + A++ ED + + FG V
Sbjct: 369 FHGKPLYVAIAQKK---EDRKMQLQVQFGNRV 397
Score = 140 (54.3 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 37/119 (31%), Positives = 60/119 (50%)
Query: 300 YSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEK 359
Y G A A E + + +K + + + IA+ I+V+N++ VTE++L K F +
Sbjct: 272 YVGRAQ--KKAEREQLLREQFKEKHEEQKM---IAKVSNIYVKNVNVAVTEEELRKHFSQ 326
Query: 360 YGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
G + L D E K+KGF V F PE A A + G +F G+ L++ + KE+
Sbjct: 327 CGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384
Score = 134 (52.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 47/173 (27%), Positives = 84/173 (48%)
Query: 609 SVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLES 668
S+T R S G+ S+ YG+ F +R+ N A++ NS L+ I + S R
Sbjct: 49 SLTSVRLCKDASSGR--SLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR---- 102
Query: 669 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 728
A +R G+ + V+N+P + ++++FK FG + V + G R
Sbjct: 103 -APDARRNG------VGN-VFVKNLPESVTNAVLQDMFKKFGNI--VSCKVATLEDGKSR 152
Query: 729 GFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL-EWAEEADNVEDIRKRTNRY 780
G+GFV+F ++ A A++ L ST + + + + ++ ++ D V+ K TN Y
Sbjct: 153 GYGFVQFEQEDAAHAAIQTL-NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLY 204
Score = 104 (41.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T L+ F++ G + ++ +GK R + F+ + +ED A AA+ N+T V I
Sbjct: 123 VTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPE 130
V K D KP+ KY ++ Y K + +DL E
Sbjct: 183 YVGKFMKKTDRVKPEE--KY---TNLYMKNLDADVSEDLLRE 219
Score = 101 (40.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 43/157 (27%), Positives = 73/157 (46%)
Query: 259 GMAYIGFKDEKNCNKA-LNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKA 317
G+ Y F + K+ L K+ S G+ L Y Y+ S + + A + N S+ N K
Sbjct: 38 GILYDAFAEFKSLTSVRLCKDAS--SGRSL-CYGYANFLSRQDANLAIEKKNNSLLNGKM 94
Query: 318 KH--WKSQEDSVQFAEDIAESG--RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKE 373
W SV+ A D +G +FV+NL +VT L +F+K+G + + E
Sbjct: 95 IRVMW-----SVR-APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LE 147
Query: 374 TDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
K++G+ V F + A A Q L+ T+ + +++
Sbjct: 148 DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
Score = 64 (27.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L +VTE L F ++ L V L D + ++ + FL + A A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ ++ G+M+ ++ P + GNV
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNV 114
Score = 64 (27.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/106 (28%), Positives = 49/106 (46%)
Query: 416 KENEGNVDGK-VHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 474
K+N ++GK + S R DA V + VKNLP L+ +F+ FG++
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVGN-----VFVKNLPESVTNAVLQDMFKKFGNI 138
Query: 475 G--RVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 515
+V G + G V+F Q++ A AA +L T + +Y+
Sbjct: 139 VSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 213 (80.0 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 65/207 (31%), Positives = 112/207 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I++L ++T +S+ HF + I V DPK+ S GYGFV F E
Sbjct: 39 LFIRSLPASATNESLAEHFSQSYVIKHAVVV--VDPKTKQ---SKGYGFVTFADVEDAKA 93
Query: 643 ALKVLQNSSLDEHQIELKRS---NRNLES-------EATTVKRKSSNVAKQTGS---KIL 689
AL+ L S+ + +I+++ + +R ++ A ++RK ++ + K++
Sbjct: 94 ALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKKQREQQKADTQPPKLI 153
Query: 690 VRNIPFQAKQSE-VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
VRN+P+ K E + F++FG++K+V LPKK GS L GFGFV K A++A++A+
Sbjct: 154 VRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKK--GSQL-AGFGFVVLRGKKNAEKALEAV 210
Query: 749 CQSTHLYGRRLVLEWAEEADNVEDIRK 775
+ GR L ++WA E + E+++K
Sbjct: 211 -NGKEVDGRTLAVDWAVEKEVWENLQK 236
Score = 175 (66.7 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 61/210 (29%), Positives = 102/210 (48%)
Query: 322 SQEDSVQFAEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKG 379
S +++VQ ED A R +F+R+L + T + L + F + + ++ +D +T ++KG
Sbjct: 22 SSKNNVQ--EDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKG 79
Query: 380 FALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN--EGNVDGKVHCCIS-ERKLD 436
+ VTF E A A + L+G+ F G+ + + +P+ + V V + ERK
Sbjct: 80 YGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKKQ 139
Query: 437 AFNQVVEARSKRIILVKNLPYRT-LPTDLKALFEPFGDLGRVLVPPYG--ITGLVEFLQK 493
Q + + ++I V+NLP+ P DL A F FG + V +P G + G F+
Sbjct: 140 REQQKADTQPPKLI-VRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKKGSQLAGF-GFVVL 197
Query: 494 NQAKAAFNSLAYTKFKEVP---LYLEWAPE 520
K A +L KEV L ++WA E
Sbjct: 198 RGKKNAEKALEAVNGKEVDGRTLAVDWAVE 227
Score = 129 (50.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 305 DDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA 364
+D+ + E+ + +E+ + ED + IF+RNL +T ++ L F ++GPL
Sbjct: 277 EDDEVSDEEDEDEDEEEEEEEEEEEKEDERNASTIFIRNLPFTCDDESLYDHFTQFGPLR 336
Query: 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
+ +D ET++ +G V F PEHA Q
Sbjct: 337 YARIVVDPETERPRGTGFVCFWKPEHAQACVQ 368
Score = 74 (31.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 653 DEHQIELK-RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGE 711
DE E+ + + + E + + ++ S I +RN+PF + + F FG
Sbjct: 275 DEEDDEVSDEEDEDEDEEEEEEEEEEEKEDERNASTIFIRNLPFTCDDESLYDHFTQFGP 334
Query: 712 LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
L++ R+ + RG GFV F A+ ++
Sbjct: 335 LRYARIVVDPE-TERPRGTGFVCFWKPEHAQACVQ 368
Score = 73 (30.8 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
+T++I+NL F ++S+ HF + GP+ + + + P G GFV F+ E
Sbjct: 309 STIFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERP-----RGTGFVCFWKPE 361
Score = 61 (26.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 227 IVVKNLPAGVKK-KDLKAYF------KPLPLASVRTTFLGMAYIGFKDEKNCNKAL 275
++V+NLP +K +DL A+F K + L + G ++ + +KN KAL
Sbjct: 152 LIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKKGSQLAGFGFVVLRGKKNAEKAL 207
Score = 56 (24.8 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 723 GSGLHRGFGFVEFITKNEAKRAMKAL 748
G+G RG+GF+E+ T A ++ L
Sbjct: 579 GAGRSRGYGFIEYYTHRHALMGLRWL 604
Score = 55 (24.4 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 616 KDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI---ELKRSNRNLESE--- 669
K + G S GYGF+++YT L+ L ++ + ELK + L E
Sbjct: 573 KVSEDSGAGRSRGYGFIEYYTHRHALMGLRWLNGHAISPPKNVSEELKDKKKRLIVEFAI 632
Query: 670 --ATTVKRK 676
A VKR+
Sbjct: 633 ENAQVVKRR 641
Score = 53 (23.7 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 25/105 (23%), Positives = 42/105 (40%)
Query: 30 TQEQLKAKFEEKGTVTDVQLKYTTEGKFRR-FAFIGYHREDQAQAALDYFNNTYVFSSRI 88
T E L F + + + + K + + F+ + + A+AAL+ N + +I
Sbjct: 49 TNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKI 108
Query: 89 KVEKCS---NLGDTTKPKSWSKYAPDSSAYQ-KLHNIAPKQDLKP 129
KVE + D T KS P + A + K K D +P
Sbjct: 109 KVEYAQPRHRVVDETVGKS----VPSAEALERKKQREQQKADTQP 149
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 179 (68.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL +T+ ++R F + G I S V KD G+ S +GFV F E+
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVM--KD----GEGKSRRFGFVNFEKAEAA 172
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLE-SEATTVKRKSSNVAK----QTGSKILVRNIPF 695
A++ + +DE ++ + R+ R +E K + + + + G + V+N+
Sbjct: 173 VTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDD 232
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGS-GLHRGFGFVEFITKNEAKRAM 745
+++EELF FG + ++ MV S G+ +G GFVEF T EA +AM
Sbjct: 233 SVDNTKLEELFSEFGTITSCKV---MVHSNGISKGVGFVEFSTSEEASKAM 280
Score = 149 (57.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 52/185 (28%), Positives = 87/185 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V+NL T T+ DL +LF ++G + ++ D E K++ F V F E A A + +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYR 458
+G V + LH+ + K N D K ++ +L+ + ++ R + VKNL
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTE-DLK-----AKFELEKIIRDMKTRKGMNLYVKNLDDS 233
Query: 459 TLPTDLKALFEPFGDLG--RVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPL 513
T L+ LF FG + +V+V GI+ G VEF +A A + P+
Sbjct: 234 VDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPI 293
Query: 514 YLEWA 518
Y+ A
Sbjct: 294 YVSLA 298
Score = 74 (31.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +FV+NL ++ L +F +G + + D + +KG+ V F A
Sbjct: 31 GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACN 89
Query: 397 HLDGTVFLGRMLHLIP 412
+GT+ + +H+ P
Sbjct: 90 FHNGTLIRNQHIHVCP 105
Score = 63 (27.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 30/127 (23%), Positives = 51/127 (40%)
Query: 3 NHLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAF 62
N +SG R ++ + +LDE I +QL F G V ++ G + + F
Sbjct: 25 NRMSG----RGNVFVKNLDE-----SIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGF 75
Query: 63 IGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQK-LHNI 121
+ ++ + A ++ N T + + I V + G W K ++ Y K L
Sbjct: 76 VQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ------WDKSRVFTNVYVKNLVET 129
Query: 122 APKQDLK 128
A DLK
Sbjct: 130 ATDADLK 136
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 170 (64.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 49/172 (28%), Positives = 80/172 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL+ +T+D ++ F + G I+S V R D KS +GFV F E
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS------RCFGFVNFENPEDA 278
Query: 641 NQALKVLQNSSLDEHQIEL----KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQ 696
+A++ L D+ + + K+S R LE + S K G + V+N+
Sbjct: 279 ARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDT 338
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
++ ELF FG + ++ + SG +G GFV F +EA R + +
Sbjct: 339 VTDEKLRELFAEFGTITSCKVMRDP--SGTSKGSGFVAFSAASEASRVLNEM 388
Score = 167 (63.8 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 53/166 (31%), Positives = 78/166 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++KNL+ + ++ F CG I S VA GQ S GYGFVQF T +S
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH----MGQ--SRGYGFVQFDTEDSAKN 189
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ L L++ QI + R E E+ K K +NV V+N+ E+
Sbjct: 190 AIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNV--------YVKNLSEATTDDEL 241
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ F +G + + + G G R FGFV F +A RA++AL
Sbjct: 242 KTTFGQYGSISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEAL 285
Score = 148 (57.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/202 (26%), Positives = 96/202 (47%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+LY+ +L+FN T+ + +F + + SV V R + S+GYG+V + +
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNT-----SLGYGYVNYSNTDDAE 101
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+A++ L S L+ I + S+R +S A R+S G+ + V+N+
Sbjct: 102 KAMQKLNYSYLNGKMIRITYSSR--DSSA----RRSG-----VGN-LFVKNLDKSVDNKT 149
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ E F G + ++ +G RG+GFV+F T++ AK A++ L L +++ +
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQS--RGYGFVQFDTEDSAKNAIEKL-NGKVLNDKQIFV 206
Query: 762 E---WAEEADNVEDIRKRTNRY 780
EE ++ D K TN Y
Sbjct: 207 GPFLRKEERESAADKMKFTNVY 228
Score = 134 (52.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 52/204 (25%), Positives = 90/204 (44%)
Query: 323 QEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFAL 382
+++ + A D + ++V+NLS T+D+L F +YG ++ ++ D + K++ F
Sbjct: 211 RKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGF 269
Query: 383 VTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISE--RKLDAFN 439
V F PE A +A + L+G F + ++ + K E E + + S+ K D N
Sbjct: 270 VNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLN 329
Query: 440 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG--RVLVPPYGIT---GLVEFLQKN 494
+ VKNL L+ LF FG + +V+ P G + G V F +
Sbjct: 330 ----------LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAAS 379
Query: 495 QAKAAFNSLAYTKFKEVPLYLEWA 518
+A N + PLY+ A
Sbjct: 380 EASRVLNEMNGKMVGGKPLYVALA 403
Score = 91 (37.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 32/106 (30%), Positives = 51/106 (48%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRT-------TFLGMAYIGFKDEKNCNKALNK 277
++ V +L V L YF + + SVR T LG Y+ + + + KA+ K
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMENIKAKH 319
N S+ GK + I S+D+SA+ SG + N + S++N K H
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDN-KTLH 151
Score = 81 (33.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+KNL+ T++ +R F + G I S V R DP S G GFV F ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMR--DPSGT----SKGSGFVAFSAASEASR 383
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEA 670
L + + + + + R E A
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQRKEERRA 411
Score = 77 (32.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +FV+NL +V L + F G + + D +++G+ V F + A A +
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIE 192
Query: 397 HLDGTVFLGRMLHLIPGKPKENEGNVDGKV 426
L+G V + + + P KE + K+
Sbjct: 193 KLNGKVLNDKQIFVGPFLRKEERESAADKM 222
Score = 70 (29.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L + VT+ L F + + V + D T+ + G+ V + + A +A Q L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 399 DGTVFLGRMLHL 410
+ + G+M+ +
Sbjct: 108 NYSYLNGKMIRI 119
Score = 58 (25.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+ + L F GT+ ++ G+ R + F+ + ED A+ A++ N + +I
Sbjct: 145 VDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
Query: 89 KV 90
V
Sbjct: 205 FV 206
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 170 (64.9 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 54/208 (25%), Positives = 97/208 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL+ + +++ + + F + G S + R + KS G +GFV F +
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKG------FGFVNFENSDDA 277
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT-----GSKILVRNIPF 695
+A+ L + D+ + + ++ + E E T +K+K K+ GS + V+N+
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERE-TELKQKFEQSLKEAADKSQGSNLYVKNLDE 336
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
++ E F FG + ++ + SG+ RG GFV F T EA RA+ T +
Sbjct: 337 SVTDDKLREHFAPFGTITSCKVMRDP--SGVSRGSGFVAFSTPEEATRAI------TEMN 388
Query: 756 GRRLVLE--WAEEADNVEDIRKRTNRYF 781
G+ +V + + A ED + R F
Sbjct: 389 GKMIVTKPLYVALAQRKEDRKARLQAQF 416
Score = 161 (61.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 52/166 (31%), Positives = 80/166 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F GPI S VA DP GQ S GYGFVQ+ T E+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVA--VDPS--GQ--SKGYGFVQYDTDEAAQG 188
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ L L++ Q+ + L+ + + K K +NV V+N+ E+
Sbjct: 189 AIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNV--------YVKNLSESLSDEEL 240
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
++F FG + + G G +GFGFV F ++A RA+ AL
Sbjct: 241 NKVFGEFGVTTSCVIMRD--GEGKSKGFGFVNFENSDDAARAVDAL 284
Score = 136 (52.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 46/186 (24%), Positives = 85/186 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V+NLS ++++++L K+F ++G ++ D E K+KGF V F + A +A L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 399 DGTVFLGRMLHLIPGKP-KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
+G F + + GK K++E + + ++ + + + + VKNL
Sbjct: 285 NGKTFDDKEWFV--GKAQKKSERETE------LKQKFEQSLKEAADKSQGSNLYVKNLDE 336
Query: 458 RTLPTDLKALFEPFGDLG--RVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVP 512
L+ F PFG + +V+ P G++ G V F +A A + P
Sbjct: 337 SVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKP 396
Query: 513 LYLEWA 518
LY+ A
Sbjct: 397 LYVALA 402
Score = 131 (51.2 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 45/168 (26%), Positives = 79/168 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T+LY+ +L+ T+ + F + G + SV V R + S+GYG+V + T +
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRR-----SLGYGYVNYATPQDA 99
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
++AL L +L+ I + S R+ RKS G+ I ++N+
Sbjct: 100 SRALNELNFMALNGRAIRVMYSVRDPSL------RKSG-----VGN-IFIKNLDKSIDHK 147
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ E F AFG + ++ + SG +G+GFV++ T A+ A+ L
Sbjct: 148 ALHETFSAFGPILSCKVA--VDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Score = 118 (46.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 48/218 (22%), Positives = 97/218 (44%)
Query: 209 PSVPPVSKAPV-HKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLAS----VRT---TFLGM 260
P V + + P K ++ + VKNL + ++L F + + +R G
Sbjct: 207 PFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGF 266
Query: 261 AYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHW 320
++ F++ + +A++ GK D+ + G A + E +K K
Sbjct: 267 GFVNFENSDDAARAVDA----LNGKTF-------DDKEWFVGKAQKKSERETE-LKQKF- 313
Query: 321 KSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGF 380
E S++ A D ++ ++V+NL +VT+D L + F +G + + D + ++G
Sbjct: 314 ---EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGS 369
Query: 381 ALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
V F PE AT+A ++G + + + L++ + KE+
Sbjct: 370 GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKED 407
Score = 89 (36.4 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 330 AEDIAESGR--IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM 387
A A+ G ++V +L TVT+ L + F + G + V + D T ++ G+ V +
Sbjct: 36 AAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYAT 95
Query: 388 PEHATQAYQHLDGTVFLGRMLHLI-----PGKPKENEGNV 422
P+ A++A L+ GR + ++ P K GN+
Sbjct: 96 PQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNI 135
Score = 86 (35.3 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L + F +GP+ + +D + ++KG+ V + E A A
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAID 191
Query: 397 HLDGTVFLGRMLHLIP 412
L+G + + +++ P
Sbjct: 192 KLNGMLLNDKQVYVGP 207
Score = 60 (26.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ G+ + + F+ Y ++ AQ A+D N + ++
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Query: 89 KV 90
V
Sbjct: 204 YV 205
Score = 58 (25.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 226 TIVVKNLPAGVKKKDL-KAYFKPLPLASVR-----TT--FLGMAYIGFKDEKNCNKALNK 277
++ V +L A V L +A+ + + SVR TT LG Y+ + ++ ++ALN+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMENIKAKH 319
N G+ + + +D S + SG + N + S+++ KA H
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDH-KALH 150
Score = 44 (20.5 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL-----VPPYGIT---GLVEFLQKNQAKAAFN 501
I +KNL +++ D KAL E F G +L V P G + G V++ A+ A +
Sbjct: 135 IFIKNLD-KSI--DHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAID 191
Query: 502 SL 503
L
Sbjct: 192 KL 193
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 42/197 (21%), Positives = 97/197 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+++++ F +T + + F + P+ + + KS G+GFV F +
Sbjct: 34 TLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKS------RGFGFVSFTLDDDCL 87
Query: 642 QALKVLQNSSLDEHQIELK-RSNRNLESEATTVKRKSSNVA--KQTGSKILVRNIPFQAK 698
AL + + + + + R+ + + +++ S+V ++ +++++RN+P+ K
Sbjct: 88 TALVESRKTKFKDRLLRVDVAKRRDRKPQEGNERQEKSHVEPIEKRRARLIIRNLPWSCK 147
Query: 699 Q-SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ E++++F +G + +PKK G GF FV + A++A++ CQ + GR
Sbjct: 148 KPDELKKIFSKYGAVFDAYIPKKKGGQMC--GFAFVIMKKNSAAEKAVEG-CQGLKIDGR 204
Query: 758 RLVLEWAEEADNVEDIR 774
+ +++A E E ++
Sbjct: 205 EVAVDFAVEKSKWEQMK 221
Score = 154 (59.3 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 40/173 (23%), Positives = 88/173 (50%)
Query: 309 NASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL 368
+ + N+ + +++SV+ +D + +FVR++ + T ++L++ F ++ P+ ++
Sbjct: 5 DVNKSNVMVESVDLKQESVKNQDDGLDRKTLFVRSIPFEATSEELSEFFSQFVPVKHAVI 64
Query: 369 PIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHC 428
D E K++GF V+F + + A T F R+L + K ++ + +G
Sbjct: 65 VTDNER-KSRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRRDRKPQ-EG---- 118
Query: 429 CISERKLDAFNQVVEARSKRIILVKNLPYRTL-PTDLKALFEPFGDLGRVLVP 480
+ER+ + + +E R R+I ++NLP+ P +LK +F +G + +P
Sbjct: 119 --NERQEKSHVEPIEKRRARLI-IRNLPWSCKKPDELKKIFSKYGAVFDAYIP 168
Score = 105 (42.0 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+V + LD E++ + + E++ K+KS+ +Q I VRNIP+ A ++E
Sbjct: 273 EVNSDKELDSFDEEMEEPEK--KEESSHPKKKSN---RQEPFSIFVRNIPYDADTESLKE 327
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
F FG +K+ LP +GL +G FV F K +A
Sbjct: 328 HFSTFGTVKYA-LPVVDKETGLAKGSAFVAF-AKEDA 362
Score = 86 (35.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 43/189 (22%), Positives = 79/189 (41%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRTT----FLGMAYIGFKDEKNCNKALNKN 278
T+ V+++P ++L +F P+ A + T G ++ F + +C AL ++
Sbjct: 34 TLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKSRGFGFVSFTLDDDCLTALVES 93
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGR 338
+ K K + + + AK N E KS + ++ R
Sbjct: 94 RKT-KFKD----RLLRVDVAKRRDRKPQEGNERQE-------KSHVEPIE-----KRRAR 136
Query: 339 IFVRNLSYTVTE-DDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+ +RNL ++ + D+L K+F KYG + + +P K+ + GFA V A +A +
Sbjct: 137 LIIRNLPWSCKKPDELKKIFSKYGAVFDAYIP-KKKGGQMCGFAFVIMKKNSAAEKAVEG 195
Query: 398 LDGTVFLGR 406
G GR
Sbjct: 196 CQGLKIDGR 204
Score = 59 (25.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 31/120 (25%), Positives = 52/120 (43%)
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRN-LESEAT--TVKR 675
K+P LS+ ++ R +ALK L ++ + E+K R L E +VK
Sbjct: 472 KNPTLHLSLTRLAIRNLPRAMNAKALKALGRKAVVQFATEVKEGKRQPLSKEEVNRSVKF 531
Query: 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
K S +I ++K S+ + + K + K + K +G RG+GF+EF
Sbjct: 532 KHSIYGADAEEEIA------KSKNSKHKGVVK---QAKVIMEVKGSGETGRSRGYGFIEF 582
Score = 57 (25.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES-- 639
+++++N+ +++ +S++ HF G +V A K G L+ G FV F ++
Sbjct: 310 SIFVRNIPYDADTESLKEHFSTFG---TVKYALPVVDKETG--LAKGSAFVAFAKEDAYL 364
Query: 640 --LNQALKVLQNSSL--DEHQIELKRSNRNLESEATTVKRKS-SNVAKQTGSK 687
L+ A V S L D+ R L S A+ V R S S +A + K
Sbjct: 365 DCLDNAPTVASTSMLIADDVSPSYVYQGRIL-SIASAVDRDSASKLADRNSLK 416
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 626 SMGYGFVQFYTRESLNQALKVL 647
S GYGF++F ++ L+ L
Sbjct: 574 SRGYGFIEFRDHKAALMGLRWL 595
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/107 (20%), Positives = 48/107 (44%)
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
LN+ ++ +NS L ++ + R + T + K + + +++ +RN+P +A
Sbjct: 436 LNEG-RITENSKLAQYISKTDLELREKSYKLRTQQLKKNPTLHLSLTRLAIRNLP-RAMN 493
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
++ KA G V+ + V G + ++K E R++K
Sbjct: 494 AKA---LKALGRKAVVQFATE-VKEGKRQP------LSKEEVNRSVK 530
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 42/197 (21%), Positives = 97/197 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+++++ F +T + + F + P+ + + KS G+GFV F +
Sbjct: 34 TLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKS------RGFGFVSFTLDDDCL 87
Query: 642 QALKVLQNSSLDEHQIELK-RSNRNLESEATTVKRKSSNVA--KQTGSKILVRNIPFQAK 698
AL + + + + + R+ + + +++ S+V ++ +++++RN+P+ K
Sbjct: 88 TALVESRKTKFKDRLLRVDVAKRRDRKPQEGNERQEKSHVEPIEKRRARLIIRNLPWSCK 147
Query: 699 Q-SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR 757
+ E++++F +G + +PKK G GF FV + A++A++ CQ + GR
Sbjct: 148 KPDELKKIFSKYGAVFDAYIPKKKGGQMC--GFAFVIMKKNSAAEKAVEG-CQGLKIDGR 204
Query: 758 RLVLEWAEEADNVEDIR 774
+ +++A E E ++
Sbjct: 205 EVAVDFAVEKSKWEQMK 221
Score = 154 (59.3 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 40/173 (23%), Positives = 88/173 (50%)
Query: 309 NASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVIL 368
+ + N+ + +++SV+ +D + +FVR++ + T ++L++ F ++ P+ ++
Sbjct: 5 DVNKSNVMVESVDLKQESVKNQDDGLDRKTLFVRSIPFEATSEELSEFFSQFVPVKHAVI 64
Query: 369 PIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHC 428
D E K++GF V+F + + A T F R+L + K ++ + +G
Sbjct: 65 VTDNER-KSRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRRDRKPQ-EG---- 118
Query: 429 CISERKLDAFNQVVEARSKRIILVKNLPYRTL-PTDLKALFEPFGDLGRVLVP 480
+ER+ + + +E R R+I ++NLP+ P +LK +F +G + +P
Sbjct: 119 --NERQEKSHVEPIEKRRARLI-IRNLPWSCKKPDELKKIFSKYGAVFDAYIP 168
Score = 105 (42.0 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 645 KVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEE 704
+V + LD E++ + + E++ K+KS+ +Q I VRNIP+ A ++E
Sbjct: 273 EVNSDKELDSFDEEMEEPEK--KEESSHPKKKSN---RQEPFSIFVRNIPYDADTESLKE 327
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
F FG +K+ LP +GL +G FV F K +A
Sbjct: 328 HFSTFGTVKYA-LPVVDKETGLAKGSAFVAF-AKEDA 362
Score = 86 (35.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 43/189 (22%), Positives = 79/189 (41%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASVRTT----FLGMAYIGFKDEKNCNKALNKN 278
T+ V+++P ++L +F P+ A + T G ++ F + +C AL ++
Sbjct: 34 TLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKSRGFGFVSFTLDDDCLTALVES 93
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGR 338
+ K K + + + AK N E KS + ++ R
Sbjct: 94 RKT-KFKD----RLLRVDVAKRRDRKPQEGNERQE-------KSHVEPIE-----KRRAR 136
Query: 339 IFVRNLSYTVTE-DDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+ +RNL ++ + D+L K+F KYG + + +P K+ + GFA V A +A +
Sbjct: 137 LIIRNLPWSCKKPDELKKIFSKYGAVFDAYIP-KKKGGQMCGFAFVIMKKNSAAEKAVEG 195
Query: 398 LDGTVFLGR 406
G GR
Sbjct: 196 CQGLKIDGR 204
Score = 59 (25.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 31/120 (25%), Positives = 52/120 (43%)
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRN-LESEAT--TVKR 675
K+P LS+ ++ R +ALK L ++ + E+K R L E +VK
Sbjct: 472 KNPTLHLSLTRLAIRNLPRAMNAKALKALGRKAVVQFATEVKEGKRQPLSKEEVNRSVKF 531
Query: 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
K S +I ++K S+ + + K + K + K +G RG+GF+EF
Sbjct: 532 KHSIYGADAEEEIA------KSKNSKHKGVVK---QAKVIMEVKGSGETGRSRGYGFIEF 582
Score = 57 (25.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES-- 639
+++++N+ +++ +S++ HF G +V A K G L+ G FV F ++
Sbjct: 310 SIFVRNIPYDADTESLKEHFSTFG---TVKYALPVVDKETG--LAKGSAFVAFAKEDAYL 364
Query: 640 --LNQALKVLQNSSL--DEHQIELKRSNRNLESEATTVKRKS-SNVAKQTGSK 687
L+ A V S L D+ R L S A+ V R S S +A + K
Sbjct: 365 DCLDNAPTVASTSMLIADDVSPSYVYQGRIL-SIASAVDRDSASKLADRNSLK 416
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 626 SMGYGFVQFYTRESLNQALKVL 647
S GYGF++F ++ L+ L
Sbjct: 574 SRGYGFIEFRDHKAALMGLRWL 595
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/107 (20%), Positives = 48/107 (44%)
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
LN+ ++ +NS L ++ + R + T + K + + +++ +RN+P +A
Sbjct: 436 LNEG-RITENSKLAQYISKTDLELREKSYKLRTQQLKKNPTLHLSLTRLAIRNLP-RAMN 493
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
++ KA G V+ + V G + ++K E R++K
Sbjct: 494 AKA---LKALGRKAVVQFATE-VKEGKRQP------LSKEEVNRSVK 530
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 159 (61.0 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 53/197 (26%), Positives = 98/197 (49%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ ++ F G I S VA+ + G +S GYGFV + T E+ N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF----G--VSKGYGFVHYETAEAANN 185
Query: 643 ALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
A+K + L++ ++ + S ++ +S+ +K +N I ++NI + +
Sbjct: 186 AIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTN--------IYIKNIDPEVEDE 237
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
E +LF+ FGE+ L + G RGFGFV F T A+ A++ + + ++L
Sbjct: 238 EFRKLFEKFGEITSATLSRDSEGKS--RGFGFVNFSTHESAQAAVEEM-NDKEVRSQKLY 294
Query: 761 LEWAEEA-DNVEDIRKR 776
+ A++ + E++RK+
Sbjct: 295 VGRAQKKHEREEELRKQ 311
Score = 145 (56.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 36/136 (26%), Positives = 67/136 (49%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN++ ++ R+ F+K G I S T++R + KS G+GFV F T ES
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS------RGFGFVNFSTHESA 276
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
A++ + + + ++ + R+ + E E K+ + +K G + V+N+
Sbjct: 277 QAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDD 336
Query: 697 AKQSEVEELFKAFGEL 712
++ ELF +G +
Sbjct: 337 VDDDKLRELFGPYGTI 352
Score = 115 (45.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 40/157 (25%), Positives = 68/157 (43%)
Query: 319 HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
H ++ +F E A I+++N+ V +++ KLFEK+G + L D E K++
Sbjct: 205 HISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSR 263
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLDA 437
GF V F E A A + ++ + L++ + K E E + + E K
Sbjct: 264 GFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARME-KASK 322
Query: 438 FNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL 474
+ V + VKNL L+ LF P+G +
Sbjct: 323 YQGVN-------LYVKNLTDDVDDDKLRELFGPYGTI 352
Score = 100 (40.3 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
++ E+ + FE+ G +T L +EGK R F F+ + + AQAA++ N+ V S +
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQK 292
Query: 88 IKV 90
+ V
Sbjct: 293 LYV 295
Score = 97 (39.2 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 32/125 (25%), Positives = 56/125 (44%)
Query: 303 AADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP 362
A +N N + +N A + E ++ S ++V L +VTE L +LF G
Sbjct: 10 APAENTNGTPDNAPAPEVTAVEAPATTSQP--HSASLYVGELDPSVTEAMLYELFSSIGQ 67
Query: 363 LAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI-----PGKPKE 417
+A + + D T ++ G+A V + H +A L+ T+ G+ ++ P K
Sbjct: 68 VASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKT 127
Query: 418 NEGNV 422
+GNV
Sbjct: 128 GQGNV 132
Score = 81 (33.6 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 37/131 (28%), Positives = 62/131 (47%)
Query: 203 DTAPSDPSVPPVSKAPVHKRQYHT--IVVKNLPAGVKKKDLKAYFKPL-PLASVRTT--- 256
D AP+ P V V +AP Q H+ + V L V + L F + +AS+R
Sbjct: 20 DNAPA-PEVTAV-EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 77
Query: 257 ----FLGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNN 308
LG AY+ + D + +AL++ N + KGK I +D + + +G + N
Sbjct: 78 VTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 137
Query: 309 NASMENIKAKH 319
+++++N KA H
Sbjct: 138 DSAIDN-KALH 147
Score = 77 (32.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 30/133 (22%), Positives = 54/133 (40%)
Query: 290 YKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVT 349
Y Y N + A D N ++ IK K + A G +F++NL +
Sbjct: 85 YAYVNYNDTAHGERALDELNYTL--IKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAID 142
Query: 350 EDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRML- 408
L F +G + + D E +KG+ V + E A A +H++G + + +
Sbjct: 143 NKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVF 201
Query: 409 --HLIPGKPKENE 419
H I K ++++
Sbjct: 202 VGHHISKKDRQSK 214
Score = 62 (26.9 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 669 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 728
E T + ++ A + K A++ E EE K E K P+K G +
Sbjct: 365 ETATPESETKESANKENEKAAEGEKEPAAEEKEKEE--KKEAEQK----PEKKP-LGKSK 417
Query: 729 GFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
GFGFV F + +EA +A+ + Q + G+ L + A+ D
Sbjct: 418 GFGFVCFSSPDEASKAVTEMNQRM-VNGKPLYVALAQRKD 456
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDP 618
LY+KNL + +D +R F G I S V R P
Sbjct: 328 LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAP 363
Score = 56 (24.8 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 310 ASMENIKAKHWKSQEDSVQFAEDIAESG-RIFVRNLSYTVTEDDLTKLFEKYGPL--AEV 366
A ++ + + + Q ++ + + G ++V+NL+ V +D L +LF YG + A+V
Sbjct: 298 AQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Query: 367 I---LPIDKETDKTK 378
+ P++ T +++
Sbjct: 358 MRDTAPVETATPESE 372
Score = 48 (22.0 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
+T+ L F G V +++ + + +A++ Y+ + ALD N T +
Sbjct: 53 VTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLI 108
Score = 43 (20.2 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 613 ARKKDPKSP-GQFLSMGYGFVQFYTRESLNQAL 644
A +K K P G+ S G+GFV F + + ++A+
Sbjct: 404 AEQKPEKKPLGK--SKGFGFVCFSSPDEASKAV 434
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 170 (64.9 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K G SV V DP G+ S G+GFV F E
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMT--DPT--GK--SKGFGFVSFEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + ++ + + R+ + +E +A +R K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRIAGM 389
Score = 128 (50.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 70/288 (24%), Positives = 127/288 (44%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQDA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N + ++ L +L
Sbjct: 151 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F KYG V + D T K+KGF V+F E A +A + ++G G+M+ + G+ +
Sbjct: 211 FSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ V+ + +R+ + Q +R + + L +KNL L+ F PFG +
Sbjct: 268 KK---VERQAEL---KRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 322 SAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 122 (48.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 43/195 (22%), Positives = 93/195 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+++ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQDAADR 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGDDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF +G+ V++ G +GFGFV F +A +A++ + + G+ + +
Sbjct: 208 KELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKAVEEM-NGKDINGKMVFVG 264
Query: 763 WAEE-ADNVEDIRKR 776
A++ + ++++R
Sbjct: 265 RAQKKVERQAELKRR 279
Score = 106 (42.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
++++NL T+ ++ L K F +G + A+V+L E ++KGF V F PE AT+A
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML----EDGRSKGFGFVCFSSPEEATKAVT 351
Query: 397 HLDGTVFLGRMLHLIPGKPKE 417
++G + + L++ + KE
Sbjct: 352 EMNGRIVGSKPLYVALAQRKE 372
Score = 83 (34.3 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 40 (19.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 169 (64.5 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++S++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR--DPS--GK--SKGFGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 132 (51.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 53/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDESL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + SG +GFGFV + +A +A+ K + GR
Sbjct: 208 KELFSQFGKTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 118 (46.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 67/288 (23%), Positives = 127/288 (44%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N V ++ L +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F ++G V + D + K+KGF V++ E A +A + ++G G+++ + G+ +
Sbjct: 211 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ V+ + +RK + Q +R + + L +KNL L+ F PFG +
Sbjct: 268 KK---VERQAEL---KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 322 SAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 84 (34.6 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 201 (75.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 58/197 (29%), Positives = 99/197 (50%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+TL++ NL++N + + FK CG +VT AR + G+ S G+G+V F T E
Sbjct: 239 STLFVGNLSWNVDDAMLAEEFKFCG---TVTSARVITDRESGR--SKGFGYVDFATPEEA 293
Query: 641 NQALKVLQNSSLDEHQIEL-----KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPF 695
+A Q + +D +I++ K +N N ++ K+ V+ ++ + + V N+PF
Sbjct: 294 EKAHGEKQGAFIDGREIKVDFSTGKATNSN-DAAGARAKKYGDTVSPESDT-LFVGNLPF 351
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
A + V F E+K +RLP + SG +GFG+V F + +AK A + L +
Sbjct: 352 DADEDSVGAFFSEVAEVKSLRLPTEQE-SGRRKGFGYVTFNSVEDAKSAFEQL-NGQSIN 409
Query: 756 GRRLVLEWAEEADNVED 772
GR L+++ ED
Sbjct: 410 GRNCRLDYSTPRPPRED 426
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 77/340 (22%), Positives = 131/340 (38%)
Query: 91 EKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDF 150
E ++ D++ +S +K AP A + A + ++ + DS S +D + SD
Sbjct: 108 ESEADSSDSSDSESDAKPAPKEKAATNVDKKAAAKKVEKSESSDSD-SDSSDSDESDSDA 166
Query: 151 LQLHGKDVSKLLPLXXXXXXXXXXXXXXXXXXQIAHADISDMEYLKLKTKSKDTAPSDPS 210
+ K +D + + K + SK +
Sbjct: 167 KPAKAEKTDKAKKEETDSDSDSDSDSDSSGSDS---SDDEEEKPAKTEAPSKKRKAEEEE 223
Query: 211 VPPVSKAPVHKRQY-HTIVVKNLPAGVKKKDLKAYFK---PLPLASVRTTF-LGMAY-IG 264
P K + T+ V NL V L FK + A V T G + G
Sbjct: 224 EAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFG 283
Query: 265 FKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYS-GAADDNNNASMENIKAKHWKSQ 323
+ D +A K+ G++ + ++ +S G A ++N+A+ +AK +
Sbjct: 284 YVDFATPEEA---EKAH--GEKQGAFIDGREIKVDFSTGKATNSNDAA--GARAKKYG-- 334
Query: 324 EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALV 383
D+V ES +FV NL + ED + F + + + LP ++E+ + KGF V
Sbjct: 335 -DTVS-----PESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYV 388
Query: 384 TFLMPEHATQAYQHLDGTVFLGRMLHL---IPGKPKENEG 420
TF E A A++ L+G GR L P P+E+ G
Sbjct: 389 TFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPRPPREDGG 428
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 168 (64.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++S++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR--DPN--GK--SKGFGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 128 (50.1 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 52/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDESL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + +G +GFGFV + +A +A+ K + GR
Sbjct: 208 KELFSQFGKTLSVKVMRDP--NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 117 (46.2 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 67/288 (23%), Positives = 126/288 (43%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N V ++ L +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F ++G V + D K+KGF V++ E A +A + ++G G+++ + G+ +
Sbjct: 211 FSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ V+ + +RK + Q +R + + L +KNL L+ F PFG +
Sbjct: 268 KK---VERQAEL---KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 322 SAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 84 (34.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 168 (64.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++S++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR--DPN--GK--SKGFGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 128 (50.1 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 52/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDESL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + +G +GFGFV + +A +A+ K + GR
Sbjct: 208 KELFSQFGKTLSVKVMRDP--NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 117 (46.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 67/288 (23%), Positives = 126/288 (43%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N V ++ L +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F ++G V + D K+KGF V++ E A +A + ++G G+++ + G+ +
Sbjct: 211 FSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ V+ + +RK + Q +R + + L +KNL L+ F PFG +
Sbjct: 268 KK---VERQAEL---KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 322 SAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 84 (34.6 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 166 (63.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 51/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN +++++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR--DPS--GK--SKGFGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 132 (51.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 53/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDENL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + SG +GFGFV + +A +A+ K + GR
Sbjct: 208 KELFSQFGKTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 119 (46.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 67/288 (23%), Positives = 128/288 (44%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N V +++L +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F ++G V + D + K+KGF V++ E A +A + ++G G+++ + G+ +
Sbjct: 211 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ V+ + +RK + Q +R + + L +KNL L+ F PFG +
Sbjct: 268 KK---VERQAEL---KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 322 SAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 84 (34.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 159 (61.0 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 49/192 (25%), Positives = 88/192 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKNL+ TE F + G I S+++ + ++ K P G+GFV + E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-P-----RGFGFVNYANHECA 314
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L + ++ + R+ + E E KR K + K G + ++N+ +
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDE 374
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ F AFG + ++ G +GFGFV + T EA +A+ + Q L G
Sbjct: 375 VDDERLKAEFSAFGTITSAKIMTDEQGKS--KGFGFVCYTTPEEANKAVTEMNQRM-LAG 431
Query: 757 RRLVLEWAEEAD 768
+ L + A+ +
Sbjct: 432 KPLYVALAQRKE 443
Score = 145 (56.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 53/197 (26%), Positives = 95/197 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ ++ F G I S VA + G + GYGFV F + ES N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE----LGN--AKGYGFVHFDSVESANA 223
Query: 643 ALKVLQNSSLDEHQIELKR--SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
A++ + L++ ++ + S R +S+ +K +NV ++N+ + +
Sbjct: 224 AIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNV--------YIKNLDTEITEQ 275
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
E +LF FGE+ + L K + RGFGFV + A++A+ L + G++L
Sbjct: 276 EFSDLFGQFGEITSLSLVKDQ--NDKPRGFGFVNYANHECAQKAVDELNDKEYK-GKKLY 332
Query: 761 LEWAEEA-DNVEDIRKR 776
+ A++ + E++RKR
Sbjct: 333 VGRAQKKHEREEELRKR 349
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 53/238 (22%), Positives = 103/238 (43%)
Query: 290 YKYSKDNSAKYSGAADDNNNASMENIK---AKHWKSQEDSVQFAEDI-AESGRIFVRNLS 345
Y + +S + + AA ++ N + N K H S+ + E + A ++++NL
Sbjct: 210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLD 269
Query: 346 YTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLG 405
+TE + + LF ++G + + L D + DK +GF V + E A +A L+ + G
Sbjct: 270 TEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKG 328
Query: 406 RMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLK 465
+ L++ G+ ++ + ++ + KL+ N+ + +KNL LK
Sbjct: 329 KKLYV--GRAQKKHEREE-ELRKRYEQMKLEKMNKYQGVN----LFIKNLQDEVDDERLK 381
Query: 466 ALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
A F FG + +++ G + G V + +A A + PLY+ A
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Score = 114 (45.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 45/211 (21%), Positives = 93/211 (44%)
Query: 215 SKAPVHKRQYHTIVVKNLPAGVKKK---DLKAYFKPLP-LASVRTTF---LGMAYIGFKD 267
SK K + + +KNL + ++ DL F + L+ V+ G ++ + +
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 268 EKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDS 326
+ KA+++ N +KGK+L Y G A + E ++ ++ + + +
Sbjct: 311 HECAQKAVDELNDKEYKGKKL------------YVGRAQKKHERE-EELRKRYEQMKLEK 357
Query: 327 VQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFL 386
+ + + +F++NL V ++ L F +G + + D E K+KGF V +
Sbjct: 358 MNKYQGV----NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYT 412
Query: 387 MPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
PE A +A ++ + G+ L++ + KE
Sbjct: 413 TPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
Score = 96 (38.9 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S ++V L +VTE L +LF GP+A + + D T ++ G+A V F E +A
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 396 QHLDGTVFLGRMLHLI-----PGKPKENEGNV 422
L+ T+ GR ++ P K GNV
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNV 170
Score = 84 (34.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+G +F++NL + L F +G + + +D E KG+ V F E A A
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAI 225
Query: 396 QHLDGTVFLGRMLHL 410
+H++G + + +++
Sbjct: 226 EHVNGMLLNDKKVYV 240
Score = 70 (29.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 37/134 (27%), Positives = 59/134 (44%)
Query: 199 TKSKDTAPSDPSVP-PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT 256
++S T + SV P AP Y V L V + L F + P+AS+R
Sbjct: 57 SESTSTPTNASSVATPSGTAPTSASLY----VGELDPSVTEAMLFELFNSIGPVASIRVC 112
Query: 257 -------FLGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD--- 305
LG AY+ F + ++ KAL++ N + KG+ I +D S + G +
Sbjct: 113 RDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFI 172
Query: 306 DNNNASMENIKAKH 319
N + +++N KA H
Sbjct: 173 KNLDPAIDN-KALH 185
Score = 56 (24.8 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 27/112 (24%), Positives = 44/112 (39%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L F G V +++ + + +A++ +H + + ALD N T
Sbjct: 91 VTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTL----- 145
Query: 88 IKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGK 139
IK C + P S K + + K N+ P D K H S GK
Sbjct: 146 IKGRPCRIMWSQRDP-SLRKMGT-GNVFIK--NLDPAIDNKALHDTFSAFGK 193
Score = 39 (18.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F + A + L YT K P + W+
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
Score = 38 (18.4 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 450 ILVKNLPYRTLPT-DLKALFEPFGDLGRVL 478
+ +KNL P D KAL + F G++L
Sbjct: 170 VFIKNLD----PAIDNKALHDTFSAFGKIL 195
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 165 (63.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 51/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN +++++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR--DPS--GK--SKGFGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 132 (51.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 53/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDENL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + SG +GFGFV + +A +A+ K + GR
Sbjct: 208 KELFSQFGKTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 120 (47.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 67/288 (23%), Positives = 128/288 (44%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N V +++L +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F ++G V + D + K+KGF V++ E A +A + ++G G+++ + G+ +
Sbjct: 211 FSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ V+ + +RK + Q +R + + L +KNL L+ F PFG +
Sbjct: 268 KK---VERQAEL---KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 322 SAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Score = 84 (34.6 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 153 (58.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 31/79 (39%), Positives = 53/79 (67%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+++RN+PFQAK S+++ +F A G + V +PK +GL +GF FV+F K +A A+K
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFE-TGLPKGFAFVKFTCKKDAANAIK 390
Query: 747 ALCQSTHLYGRR-LVLEWA 764
+ H++G+R + ++WA
Sbjct: 391 KF--NGHMFGKRPIAVDWA 407
Score = 101 (40.6 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 318 KHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
K+ + ++D + + A + + V L Y++T L + F + GP+ L +K +D+
Sbjct: 3 KNKRERKDGEEKSPHAAAT--VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEH 60
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRML 408
+GFA V F + E +A + +G+ GR +
Sbjct: 61 RGFAFVKFALQEDVNRAIELKNGSTVGGRRI 91
Score = 98 (39.6 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
A+ ++ +RNL + D+ +F G + +V +P + ET KGFA V F + A
Sbjct: 328 AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAAN 387
Query: 394 AYQHLDGTVFLGRMLHLIPGKPK 416
A + +G +F R + + PK
Sbjct: 388 AIKKFNGHMFGKRPIAVDWAVPK 410
Score = 96 (38.9 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL------VEFLQKNQAKAAFNSL 503
++++NLP++ P+D+K +F G + V +P TGL V+F K A A
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 504 AYTKFKEVPLYLEWA-PEGVF 523
F + P+ ++WA P+ ++
Sbjct: 393 NGHMFGKRPIAVDWAVPKNIY 413
Score = 90 (36.7 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 33/139 (23%), Positives = 66/139 (47%)
Query: 293 SKDNSAKYSGAADDNN-NASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTED 351
SK S+ AD + + +++ K K +E Q +D + +F+RNL + VT++
Sbjct: 520 SKLKSSSTKPVADSSGVSEPLKSGKTKVVAPKE--TQDNDDFERT--LFIRNLPFDVTKE 575
Query: 352 DLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLD-----GTVFLGR 406
++ + F +G + + L + K T + +G A V F + + A D G + GR
Sbjct: 576 EVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVLLKGR 635
Query: 407 MLHLIPGKPKENEGNVDGK 425
L+++ K+ +++ K
Sbjct: 636 QLNVMRAVGKKAAKDIELK 654
Score = 88 (36.0 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 35/124 (28%), Positives = 57/124 (45%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEG--KFRRFAFIGYHREDQAQAALDYFNNTYVF 84
Y IT QL+ F E G V L T +G + R FAF+ + ++ A++ N + V
Sbjct: 29 YSITNAQLEEAFSEVGPVRRCFL-VTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVG 87
Query: 85 SSRIKVEKCSN---LGDTTKPKSWSKYAPDSSAYQKLHNIA-PKQDLK--PEHTKDSKPG 138
RI V++ ++ L + + PD+S Q + + P+ D K P K KP
Sbjct: 88 GRRITVKQAAHRPSLQERRTKAAEGISVPDNSQGQSDKDTSIPETDEKVSPPEKKLEKPV 147
Query: 139 KKSK 142
++ K
Sbjct: 148 ERKK 151
Score = 86 (35.3 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 30/125 (24%), Positives = 61/125 (48%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+ TL+I+NL F+ T++ +++ F G + S+++ K K P G FV+F T ++
Sbjct: 560 ERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPE-----GTAFVKFKTADA 614
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVA-KQTGSK-ILVRNIPFQA 697
A+ +S + + R L K+ + ++ K+T K + RN+ + A
Sbjct: 615 SVAAISAADTAS----GVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVDHRNL-YLA 669
Query: 698 KQSEV 702
K+ ++
Sbjct: 670 KEGQI 674
Score = 81 (33.6 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
+ +RN+PF + EV++ F FGE++ + L V + G FV+F T + + A+ A
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKV-TKRPEGTAFVKFKTADASVAAISA 621
Query: 748 LCQSTH----LYGRRLVLEWAEEADNVEDIR-KRT 777
++ L GR+L + A +DI K+T
Sbjct: 622 ADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKT 656
Score = 72 (30.4 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 679 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK-MVGS-GLHRGFGFVEFI 736
N+ K K L R + A S + ++KF++ KK V + RG FVEF
Sbjct: 719 NLPKSMNPKQLNRLL-VDAVTSRATKQKPCIRQIKFLQNEKKGKVDTKNYSRGVAFVEFT 777
Query: 737 TKNEAKRAMKALCQSTHLYG--RRLVLEWAEEADNVEDIRKR 776
A A++ L + +G R V+E+A DNV+ ++ R
Sbjct: 778 EHEHALVALRVLNNNPETFGPQHRPVIEFA--VDNVQKLKIR 817
Score = 72 (30.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 28/124 (22%), Positives = 53/124 (42%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA---SVRTTF-----LGMAYIGFKDEKNCN 272
K Q ++++NLP K D+K F + + F G A++ F +K+
Sbjct: 327 KAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAA 386
Query: 273 KALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAED 332
A+ K GK+ ++ + Y+GAAD ++ + + S+ SV E+
Sbjct: 387 NAIKKFNGHMFGKRPIAVDWAVPKNI-YNGAADATTASADGDKEGSDGDSENSSVDL-EE 444
Query: 333 IAES 336
+ E+
Sbjct: 445 VDEA 448
Score = 56 (24.8 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 25/105 (23%), Positives = 45/105 (42%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L I+NL F + I+ F G + V + PK+ L G+ FV+F ++
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFI-----PKNFETGLPKGFAFVKFTCKKDAAN 387
Query: 643 ALKVLQNSSLDEHQIELKRS-NRNLESEATTVKRKSSNVAKQTGS 686
A+K + I + + +N+ + A S++ K+ GS
Sbjct: 388 AIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKE-GS 431
Score = 54 (24.1 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 447 KRIILVKNLPYRTLPTDLKALFEPFGD-------LGRVLVPPYGITGLVEFLQKNQAKAA 499
+R + ++NLP+ ++K F FG+ L +V P G T V+F + + AA
Sbjct: 560 ERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEG-TAFVKFKTADASVAA 618
Query: 500 FNS 502
++
Sbjct: 619 ISA 621
Score = 46 (21.3 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNS 650
S G FV+F E AL+VL N+
Sbjct: 768 SRGVAFVEFTEHEHALVALRVLNNN 792
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 166 (63.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 136 (52.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KELFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 125 (49.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 70/287 (24%), Positives = 122/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L +L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 166 (63.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 136 (52.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KELFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 125 (49.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 70/287 (24%), Positives = 122/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L +L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 164 (62.8 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 50/212 (23%), Positives = 97/212 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++++R F + G SV V R KS G +GFV + E
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG------FGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 138 (53.6 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 54/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ N+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAANK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDENL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
ELF FG+ V++ + SG +GFGFV + +A +A+ K + + GR
Sbjct: 208 RELFSQFGKTLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 84 (34.6 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 161 (61.7 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 44/169 (26%), Positives = 83/169 (49%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++KN + +D ++ F + GP SV V R KS G +GFV++ T E+
Sbjct: 199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKG------FGFVRYETHEAA 252
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L S+D + + R+ + +E A +R + ++ G I ++N+
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ MV G +GFG + F + EA +A+
Sbjct: 313 IDDEKLKEEFSSFGSISRAKV---MVEVGQGKGFGVICFSSFEEATKAV 358
Score = 128 (50.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 49/198 (24%), Positives = 94/198 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + G S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDN----G---SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + K T + + V+N ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----KATFTNVFVKNFGDDMDDDKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF +G + V++ + SG +GFGFV + T A++A+ L + G+ L +
Sbjct: 216 KELFSEYGPTESVKVIRD--SSGKSKGFGFVRYETHEAAQKAVLDL-HGKSIDGKVLYVG 272
Query: 763 WAEEA-DNVEDIRKRTNR 779
A++ + + ++R+R R
Sbjct: 273 RAQKKIERLAELRRRFER 290
Score = 115 (45.5 bits), Expect = 0.00077, Sum P(3) = 0.00077
Identities = 41/150 (27%), Positives = 64/150 (42%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D A +FV+N + +D L +LF +YGP E + I + K+KGF V + E A
Sbjct: 194 DKATFTNVFVKNFGDDMDDDKLKELFSEYGP-TESVKVIRDSSGKSKGFGFVRYETHEAA 252
Query: 392 TQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCIS-ERKLDAFNQVVEARSKRI- 449
+A L G G++L++ G K+ R+ + ++R +
Sbjct: 253 QKAVLDLHGKSIDGKVLYV---------GRAQKKIERLAELRRRFERLRLKEKSRPPGVP 303
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLV 479
I +KNL LK F FG + R V
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKV 333
Score = 78 (32.5 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L K F GPL + D T G+ V F P A A +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 399 DGTVFLGRMLHLIPGKPKE 417
+ + G+ L+ +P +
Sbjct: 80 NFDLINGKPFRLMWSQPDD 98
Score = 77 (32.2 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L LF +G + + D + +KG+A V F A +A
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIW 163
Query: 397 HLDGTVFLGRMLHLIPGK-PKENEGNV 422
H++G R +++ K P+E V
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEV 190
Score = 46 (21.3 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG Y+ F+ + ALN N GK + D+ + SG + N + S++
Sbjct: 59 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSID 118
Query: 314 N 314
N
Sbjct: 119 N 119
Score = 40 (19.1 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 233 PAGVKKKDLKA 243
PAG KKK LKA
Sbjct: 8 PAGKKKKYLKA 18
Score = 37 (18.1 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 481 PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
P G G V F A+ A N++ + P L W+
Sbjct: 58 PLGY-GYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 164 (62.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 50/212 (23%), Positives = 97/212 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++++R F + G SV V R KS G +GFV + E
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG------FGFVSYEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 360 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 389
Score = 138 (53.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 54/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ N+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAANK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDENL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
ELF FG+ V++ + SG +GFGFV + +A +A+ K + + GR
Sbjct: 208 RELFSQFGKTLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQG 293
Score = 84 (34.6 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 70 (29.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112
Score = 52 (23.4 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G V +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 40 (19.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 160 (61.4 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/172 (26%), Positives = 85/172 (49%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++KN + ++ +++ F + GP SV V R KS G +GFV++ T E+
Sbjct: 199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG------FGFVRYETHEAA 252
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L S+D + + R+ + +E A +R K + + G I ++N+
Sbjct: 253 QKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDET 312
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+++E F FG + ++ + VG G +GFG V F + EA +A+ +
Sbjct: 313 INDEKLKEEFSLFGSISRAKVMME-VGQG--KGFGVVCFSSFEEASKAVNEM 361
Score = 119 (46.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 46/198 (23%), Positives = 93/198 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + G S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN----G---SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+N ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNFGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF +G + V++ + G +GFGFV + T A++A+ L + G+ L +
Sbjct: 216 KKLFSEYGPTESVKVIRDATGKS--KGFGFVRYETHEAAQKAVLEL-HGKSIDGKVLCVG 272
Query: 763 WAEEA-DNVEDIRKRTNR 779
A++ + + ++R+R R
Sbjct: 273 RAQKKIERLAELRRRFER 290
Score = 96 (38.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I+++NL T+ ++ L + F +G ++ + E + KGF +V F E A++A +
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRA--KVMMEVGQGKGFGVVCFSSFEEASKAVNEM 361
Query: 399 DGTVFLGRMLHLIPGKPK 416
+G V + LH+ G+ +
Sbjct: 362 NGRVVGSKTLHVTLGQAR 379
Score = 79 (32.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L K F GPL + D T G+ V F P A A +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 399 DGTVFLGRMLHLIPGKPKEN 418
+ + G+ L+ +P ++
Sbjct: 80 NFDLINGKPFRLMWSQPDDH 99
Score = 76 (31.8 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L LF +G + + D + +KG+A V F A +A
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIW 163
Query: 397 HLDGTVFLGRMLHLIPGK-PKENEGNV 422
H++G R +++ K P+E V
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEV 190
Score = 69 (29.3 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
I E+LK F E G V++ GK + F F+ Y + AQ A+
Sbjct: 210 IDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAV 256
Score = 47 (21.6 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG Y+ F+ + ALN N GK + D+ + SG + N + S++
Sbjct: 59 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSID 118
Query: 314 N 314
N
Sbjct: 119 N 119
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 481 PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
P G G V F A+ A N++ + P L W+
Sbjct: 58 PLGY-GYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 164 (62.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 123 (48.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 164 (62.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 123 (48.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 164 (62.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 123 (48.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 164 (62.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 123 (48.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 164 (62.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 123 (48.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 82 (33.9 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 39 (18.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 193 (73.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 53/195 (27%), Positives = 100/195 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ NL++N TE+ + + F++ G ++ AR + G+ S G+G+V+F +
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGELS----ARIMTERDTGR--SRGFGYVEFTNAADAAK 332
Query: 643 ALKVLQNSSLDEHQIELK-RSNRNLESEATTVKRKSSNVAKQTGSK-------ILVRNIP 694
A + ++ +D +I L + R + K ++ N A+ G + + V N+P
Sbjct: 333 AYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLP 392
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL 754
F A + V E+F G + +RLP M SG +GFG+V++ + +EA++A L Q +
Sbjct: 393 FSANEDSVHEVFGPQGNVLGIRLPTDME-SGRPKGFGYVQYSSVDEARKAYNEL-QGAEI 450
Query: 755 YGRRLVLEWAEEADN 769
GR + L+++ N
Sbjct: 451 DGRPIRLDFSTPRAN 465
Score = 167 (63.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 58/240 (24%), Positives = 117/240 (48%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQED----SVQFAEDIAESGRIFVRNLSYTV 348
S +S + SG++ + S + +K K++E+ S + + S +FV NLS+ V
Sbjct: 229 SSSDSDEESGSSGSESEDSDKPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNV 288
Query: 349 TEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRML 408
TE+ L + FE++G L+ I+ +++T +++GF V F A +AY+ + GR +
Sbjct: 289 TEEWLHQEFEQFGELSARIMT-ERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKI 347
Query: 409 HL--IPGKP-KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLK 465
+L G+P +++G + ++ + +F S + V NLP+ +
Sbjct: 348 NLDYATGRPANKDQGGFKER-----AQNRARSFGDQTSPESDTLF-VGNLPFSANEDSVH 401
Query: 466 ALFEPFGDLGRVLVP-------PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+F P G++ + +P P G G V++ ++A+ A+N L + P+ L+++
Sbjct: 402 EVFGPQGNVLGIRLPTDMESGRPKGF-GYVQYSSVDEARKAYNELQGAEIDGRPIRLDFS 460
Score = 137 (53.3 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 321 KSQEDSVQFAEDIA-ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKG 379
++Q + F + + ES +FV NL ++ ED + ++F G + + LP D E+ + KG
Sbjct: 367 RAQNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKG 426
Query: 380 FALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDG 424
F V + + A +AY L G GR + L P+ N G G
Sbjct: 427 FGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPRANNGGGGG 471
Score = 49 (22.3 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGY-HREDQAQA 73
+ +T+E L +FE+ G ++ + G+ R F ++ + + D A+A
Sbjct: 286 WNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKA 333
Score = 48 (22.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 98 DTTKPKSWSKYAPDSS-AYQKLHNIAPKQ-DLKPEHTKDSKPGKKSKNDP 145
+ K +S S+ DSS + +++ + + + D + E ++ KP K +K +P
Sbjct: 101 EAKKAESSSESESDSSDSDEEMKDASSSESDSESESEEEKKPAKSAKAEP 150
Score = 47 (21.6 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 89 KVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFS 148
KV+ T PK+ SK A ++ + K++ P + +S+ +S++D + S
Sbjct: 25 KVKDAGVTKATQSPKAKSKQIAREIASKEKKPKSKKKEPTPSSSSESESESESESDSSSS 84
Query: 149 DFLQLHGKDVSK 160
+ K V K
Sbjct: 85 ESESEDEKPVKK 96
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 164 (62.8 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 51/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + + ++ F K G SV V DP G+ S G+GFV + E
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMT--DPT--GK--SRGFGFVSYEKHEDA 245
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + L+ + + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 246 NKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 305
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 306 IDDEKLRKEFSPFGSITSAKV---MLEEGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 360
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 361 SKPLYVALAQRKE--ERKAHLTNQYMQRIAGM 390
Score = 127 (49.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 44/184 (23%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+++ ++
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQDAADR 154
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N +
Sbjct: 155 AIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAK-----AKEF-TNVYIKNFGDDMDDQRL 208
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF +G+ V++ G RGFGFV + +A +A++ + T L G+ + +
Sbjct: 209 KELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEKHEDANKAVEEM-NGTELNGKTVFVG 265
Query: 763 WAEE 766
A++
Sbjct: 266 RAQK 269
Score = 126 (49.4 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 70/288 (24%), Positives = 124/288 (43%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YS-------GA 303
S+R + +G +I D+ NKAL S + G L+ +N +K Y+ A
Sbjct: 93 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYAFVHFETQDA 151
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
AD + N + N + +KS+++ + E ++++N + + L +L
Sbjct: 152 ADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKEL 211
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F+KYG V + D T K++GF V++ E A +A + ++GT G+ + + K
Sbjct: 212 FDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV-FVGRAQK 269
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL- 474
+ E + K RK + Q +R + + L +KNL L+ F PFG +
Sbjct: 270 KMERQAELK-------RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSIT 322
Query: 475 -GRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+V++ G + G V F +A A + PLY+ A
Sbjct: 323 SAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Score = 81 (33.6 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L +TE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GNV K + I + L D F+ S +++
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 133
Query: 452 VKN 454
+N
Sbjct: 134 DEN 136
Score = 67 (28.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L + + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 113
Score = 54 (24.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
IT+ L KF G V +++ + + +A++ + + A+ ALD N V
Sbjct: 23 ITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKP 82
Query: 88 IKV 90
I++
Sbjct: 83 IRI 85
Score = 45 (20.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + +D A A++ N+ V
Sbjct: 111 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKV 169
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 170 FVGRFKSRK 178
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 58 VNFQQPADAERALDTMNFDVVKGKPIRIMWS 88
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 129 (50.5 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 41/165 (24%), Positives = 76/165 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T ++ KNL+ + D ++ ++ G I ++T+ D K G+ S G+GF F + E+
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMA--DDK--GK--SKGFGFANFESAEAA 241
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
++ I R+ + +E EA + K + K G + ++NI
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQKKIEREA---ELKHTFETKYQGVNLYIKNIDDSIDND 298
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
++ E+F FG + + K + +GFGFV + +EA RA+
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKAT-TSKGFGFVCYTAPDEATRAV 342
Score = 106 (42.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 293 SKDNS-AKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTED 351
S D + AK +G + + K+ + Q V+F +F +NLS V D
Sbjct: 150 SADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTN-------VFFKNLSEDVGPD 202
Query: 352 DLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409
L +L ++YG + + + D + K+KGF F E A ++ +G +F G+ ++
Sbjct: 203 QLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIY 259
Score = 104 (41.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++++N+ ++ D L ++F ++G + I+ D + +KGF V + P+ AT+A +
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 399 DGTVFLGRMLHLIPGKPKE 417
+G + + L++ + K+
Sbjct: 346 NGRMIGTKPLYVALAQRKD 364
Score = 88 (36.0 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 29/125 (23%), Positives = 51/125 (40%)
Query: 296 NSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTK 355
N A A D NN + + SQ D + G +F++NL + L
Sbjct: 60 NGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGV---GNVFIKNLDKGIDHKALYD 116
Query: 356 LFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415
F +G + + D + + +KGF V + E A +A ++G + G+ + + P K
Sbjct: 117 TFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKS 175
Query: 416 KENEG 420
+ G
Sbjct: 176 SKERG 180
Score = 70 (29.7 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 24 EFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNT 81
+ + +++++ L F + G V+++++ + T + +A++ Y+ A+ ALD NNT
Sbjct: 16 DLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNT 74
Score = 63 (27.2 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 17/79 (21%), Positives = 39/79 (49%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYVFSS 86
+QLK ++ G +T++ + +GK + F F + + A+ ++ F+ +++
Sbjct: 202 DQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAG 261
Query: 87 RI--KVEKCSNLGDTTKPK 103
R K+E+ + L T + K
Sbjct: 262 RAQKKIEREAELKHTFETK 280
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRR-FAFIGYHREDQAQAALDYFNNTYVFSSR 87
I + L F G + ++ T +G + F F+ Y ++ A A+ N + +
Sbjct: 109 IDHKALYDTFSAFGNILSCKV-VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQK 167
Query: 88 IKV 90
+ V
Sbjct: 168 VFV 170
Score = 39 (18.8 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
+ +KNL D KAL++ F G +L
Sbjct: 100 VFIKNLDKGI---DHKALYDTFSAFGNIL 125
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 165 (63.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 67/256 (26%), Positives = 105/256 (41%)
Query: 233 PAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKY 292
PA K + K L +A + L + F + +C A ++N + K Y
Sbjct: 141 PALRKTGQGNVFIKNLDVA-IDNKALHDTFAAFGNILSCKVAQDENGN---SKGYGFVHY 196
Query: 293 SKDNSAKYSGAADDNNNASMENIKA---KHWKSQEDSVQFAEDIAESGRIFVRNLSYTVT 349
D +A S A N + K H ++ +F E A I+V+N++ VT
Sbjct: 197 ETDEAA--SQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254
Query: 350 EDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLH 409
+D+ LFEKYG + L D+ET K++GF V F E A++A Q L+ F G+ L+
Sbjct: 255 DDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLY 314
Query: 410 LIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFE 469
+ + K K + + K + V + +KNL L+ LF
Sbjct: 315 VGRAQKKHEREEELRKSYEAARQEKASKYQGVN-------LYIKNLDDEVDDEKLRQLFS 367
Query: 470 PFGDLGRVLVPPYGIT 485
FG + V IT
Sbjct: 368 EFGPITSAKVMRDSIT 383
Score = 158 (60.7 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 53/196 (27%), Positives = 98/196 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ ++ F G I S VA+ ++ G S GYGFV + T E+ +Q
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN----GN--SKGYGFVHYETDEAASQ 204
Query: 643 ALKVLQNSSLDEHQIELKRS--NRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
A+K + L+E ++ + ++ +S+ +K +N I V+NI +
Sbjct: 205 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTN--------IYVKNINPEVTDD 256
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
E LF+ +G++ L + +G RGFGFV F + +A +A++ L + +G+ L
Sbjct: 257 EFRTLFEKYGDVTSSSLARDQE-TGKSRGFGFVNFTSHEDASKAVQELNEK-EFHGQNLY 314
Query: 761 LEWAEEA-DNVEDIRK 775
+ A++ + E++RK
Sbjct: 315 VGRAQKKHEREEELRK 330
Score = 147 (56.8 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 35/146 (23%), Positives = 71/146 (48%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KN+N T+D R F+K G + S ++AR ++ G+ S G+GFV F + E
Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQET---GK--SRGFGFVNFTSHEDA 296
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
++A++ L + + R+ + E E K + +K G + ++N+ +
Sbjct: 297 SKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDE 356
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMV 722
++ +LF FG + ++ + +
Sbjct: 357 VDDEKLRQLFSEFGPITSAKVMRDSI 382
Score = 88 (36.0 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S ++V L +VTE L +LF + G +A + + D T ++ G+A V + +A
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 396 QHLDGTVFLGRMLHLI-----PGKPKENEGNV 422
+ L+ T+ GR ++ P K +GNV
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNV 151
Score = 66 (28.3 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 31/124 (25%), Positives = 54/124 (43%)
Query: 208 DPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLG 259
D + P S A H + ++ V L V + L F + +AS+R LG
Sbjct: 44 DTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLG 103
Query: 260 MAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMENI 315
AY+ + + KAL + N + KG+ I +D + + +G + N + +++N
Sbjct: 104 YAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDN- 162
Query: 316 KAKH 319
KA H
Sbjct: 163 KALH 166
Score = 48 (22.0 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 725 GLHRGFGFVEFITKNEAKRAMKALCQ 750
G +GFGFV F ++A +A+ + Q
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQ 455
Score = 39 (18.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 616 KDPKSPGQF-LSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664
+D KS + S G+GFV F + +A+ + ++ + + + R
Sbjct: 421 EDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQR 470
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 164 (62.8 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 212
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 213 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 272 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 318
Score = 125 (49.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GYGFV F T+E+ +A++ + L++ ++ + R E EA R AK+
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF- 158
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + ++N +++LF FG V++ SG +GFGFV F +A++A+
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAV 216
Query: 746 KALCQSTHLYGRRLVLEWAEE 766
+ L G+++ + A++
Sbjct: 217 DEM-NGKELNGKQIYVGRAQK 236
Score = 120 (47.3 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 51/205 (24%), Positives = 89/205 (43%)
Query: 320 WKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
+KS+++ + E ++++N + ++ L LF K+GP V + D E+ K+K
Sbjct: 141 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSK 199
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAF 438
GF V+F E A +A ++G G+ +++ G+ ++ V+ + +RK +
Sbjct: 200 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKK---VERQTEL---KRKFEQM 251
Query: 439 NQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQK 493
Q R + + L VKNL L+ F PFG + V G G V F
Sbjct: 252 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSP 311
Query: 494 NQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 312 EEATKAVTEMNGRIVATKPLYVALA 336
Score = 79 (32.9 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 30/108 (27%), Positives = 49/108 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQE 324
N KGK + I +D S + SG D N + + H+++QE
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGS--KGYGFVHFETQE 117
Score = 76 (31.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI 411
+ V G+ + ++
Sbjct: 73 NFDVIKGKPVRIM 85
Score = 50 (22.7 bits), Expect = 8.1e-09, Sum P(3) = 8.1e-09
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 42 (19.8 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP-KENEGNVDGK 425
+KG+ V F E A +A + ++G + R + + K KE E + +
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 154
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 168 (64.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++S++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR--DPN--GK--SKGFGFVSYEKHEDA 146
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 147 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 206
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 207 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 261
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 262 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 291
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 52/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 55
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 56 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDESL 109
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + +G +GFGFV + +A +A+ K + GR
Sbjct: 110 KELFSQFGKTLSVKVMRDP--NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 167
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 168 AQKKVERQAELKRKFEQLKQERISRYQG 195
Score = 73 (30.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+F++NL ++ L F +G + + D+ + +KG+A V F E A +A + +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 399 DGTVFLGRMLHLIPGKP-KENEGNVDGK 425
+G + R + + K KE E + K
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAK 88
Score = 50 (22.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 259 GMAYIGFKDEKNCNKALNK-NKSFWKGKQLNI--YKYSKDNSAKYSGAADDNNNASMEN 314
G A++ F+ ++ +KA+ K N +++ + +K K+ A+ A + N ++N
Sbjct: 41 GYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKN 99
Score = 42 (19.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
+ +KNL +++ D KAL++ F G +L
Sbjct: 3 VFIKNLD-KSI--DNKALYDTFSAFGNIL 28
Score = 41 (19.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 12 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 70
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 71 FVGRFKSRK 79
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 136 (52.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 50/171 (29%), Positives = 81/171 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGP-IASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
L+I N+ N TED R+ + GP + ++ + KDP + + + G+ FV +Y
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELI--KDPTNTTR--NRGFAFVLYYN----- 248
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVK---RKSS---NVAKQTGSKILVRNIPF 695
N+ D + ++ SN LE A TV KSS + A + V+NIP
Sbjct: 249 -------NACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPE 301
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+++ELF+ GE+ + P G G R FGFV + ++ A +A+K
Sbjct: 302 NTSTEQLKELFQRHGEVTKIVTPP---GKGGKRDFGFVHYAERSSALKAVK 349
Score = 105 (42.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 303 AADDNNNASMENI----KAKHWKSQEDSVQFAEDIA---ESGRIFVRNLSYTVTEDDLTK 355
A DD+N+ +E K ED +++ ++ +F+ L V E+DL
Sbjct: 75 AEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRD 134
Query: 356 LFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRML 408
L E+ G + EV L D+++ +KG+A V F + A +A + L F G+ +
Sbjct: 135 LCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTI 187
Score = 71 (30.1 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 18/77 (23%), Positives = 39/77 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+KN+ N++ + ++ F++ G + + P PG+ +GFV + R S +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVT-----P--PGKGGKRDFGFVHYAERSSALK 346
Query: 643 ALKVLQNSSLDEHQIEL 659
A+K + ++ +E+
Sbjct: 347 AVKDTERYEVNGQPLEV 363
Score = 70 (29.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+ +E L+ EE G + +V+L K G + +AF+ + +D AQ A++ ++ F
Sbjct: 127 VGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKE-FKG- 184
Query: 88 IKVEKCSNLGDTTK-------PKSWSK 107
K +CS L +T PK+W++
Sbjct: 185 -KTIRCS-LSETKNRLFIGNIPKNWTE 209
Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 259 GMAYIGFKDEKNCNKALNK--NKSFWKGKQL 287
G A++ FK + KA+ + +K F KGK +
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEF-KGKTI 187
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 156 (60.0 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 44/169 (26%), Positives = 85/169 (50%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++KN+ + ++ ++ F + GP SV V R KS G +GFV++ T E+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG------FGFVRYETHEAA 252
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L S+D + + R+ + +E A +R + ++ G I ++N+
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ + VG G +GFG V F + EA +A+
Sbjct: 313 INDEKLKEEFSSFGSISRAKVMME-VGQG--KGFGVVCFSSFEEATKAV 358
Score = 125 (49.1 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 49/198 (24%), Positives = 95/198 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + G S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN----G---SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+NI ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNIGDDIDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF +G + V++ + SG +GFGFV + T A++A+ L + G+ L +
Sbjct: 216 KELFCEYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL-HGKSIDGKVLYVG 272
Query: 763 WAEEA-DNVEDIRKRTNR 779
A++ + + ++R+R R
Sbjct: 273 RAQKKIERLAELRRRFER 290
Score = 100 (40.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I+++NL T+ ++ L + F +G ++ + E + KGF +V F E AT+A +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRA--KVMMEVGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 399 DGTVFLGRMLHLIPGKPK 416
+G + + LH+ G+ +
Sbjct: 362 NGRIVGSKPLHVTLGQAR 379
Score = 78 (32.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L K F GPL + D T G+ V F P A A +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 399 DGTVFLGRMLHLIPGKPKE 417
+ + G+ L+ +P +
Sbjct: 80 NFDLINGKPFRLMWSQPDD 98
Score = 76 (31.8 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L LF +G + + D + +KG+A V F A +A
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIW 163
Query: 397 HLDGTVFLGRMLHLIPGK-PKENEGNV 422
H++G R +++ K P+E V
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEV 190
Score = 72 (30.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQ-AALDYFNNT------ 81
I E+LK F E G V++ GK + F F+ Y + AQ A LD +
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 82 YVFSSRIKVEKCSNL 96
YV ++ K+E+ + L
Sbjct: 270 YVGRAQKKIERLAEL 284
Score = 47 (21.6 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG Y+ F+ + ALN N GK + D+ + SG + N + S++
Sbjct: 59 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118
Query: 314 N 314
N
Sbjct: 119 N 119
Score = 40 (19.1 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 233 PAGVKKKDLKA 243
PAG KKK LKA
Sbjct: 8 PAGKKKKYLKA 18
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 481 PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
P G G V F A+ A N++ + P L W+
Sbjct: 58 PLGY-GYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 164 (62.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 123 (48.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 78 (32.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 30/123 (24%), Positives = 55/123 (44%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L TE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 65 (27.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N 314
N
Sbjct: 112 N 112
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 30 TQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
T+ L KF G + +++ + + +A++ + + A+ ALD N + +
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Query: 89 KV 90
++
Sbjct: 83 RI 84
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 143 (55.4 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 43/171 (25%), Positives = 83/171 (48%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KN + ++++ + F K G I S V + G+ S G+GFV F E
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-----GK--SKGFGFVAFANPEEA 265
Query: 641 NQALKVLQNSSLDEHQIEL------KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694
A++ L +S+++ ++L K+S R+ E + + K+ + K G + V+N+
Sbjct: 266 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD 325
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++ F+++G + ++ +G +GFGFV F EA A+
Sbjct: 326 ETVDDDGLKKQFESYGNITSAKVMTDE--NGRSKGFGFVCFEKPEEATSAV 374
Score = 143 (55.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 51/170 (30%), Positives = 77/170 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ SI F G I S VA +D G S GYGFV F T E+
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED----G--FSKGYGFVHFETEEAAQN 175
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L ++ + + + R+ AKQ + + V+N + +
Sbjct: 176 AIQKVNGMLLAGKKVFVGKFQPRAQRN-----RELGETAKQF-TNVYVKNFGDHYNKETL 229
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST 752
E+LF FG + + M G +GFGFV F EA+ A++AL ST
Sbjct: 230 EKLFAKFGNITSCEV---MTVEGKSKGFGFVAFANPEEAETAVQALHDST 276
Score = 129 (50.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 31/104 (29%), Positives = 54/104 (51%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
+K KH + + + +Q + + ++V+NL TV +D L K FE YG + + D E
Sbjct: 299 LKKKHEQHKAERMQKYQGV----NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-EN 353
Query: 375 DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
++KGF V F PE AT A ++ + + L++ + KE+
Sbjct: 354 GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKED 397
Score = 116 (45.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 50/197 (25%), Positives = 86/197 (43%)
Query: 328 QFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEV-ILPIDKETDKTKGFALVTFL 386
+ E + ++V+N ++ L KLF K+G + ++ ++ K+KGF V F
Sbjct: 204 ELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE---GKSKGFGFVAFA 260
Query: 387 MPEHATQAYQHLDGTVFLGRMLHL-IPGKPKENEGNVD-GKVHCCISERKLDAFNQVVEA 444
PE A A Q L + G L L + K++E + + K H + K + +
Sbjct: 261 NPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKH---EQHKAERMQKYQGV 317
Query: 445 RSKRIILVKNLPYRTLPTD-LKALFEPFGDL--GRVLVPPYGIT---GLVEFLQKNQAKA 498
+ VKNL T+ D LK FE +G++ +V+ G + G V F + +A +
Sbjct: 318 N----LYVKNLD-ETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATS 372
Query: 499 AFNSLAYTKFKEVPLYL 515
A + PLY+
Sbjct: 373 AVTEMNSKMVCSKPLYV 389
Score = 86 (35.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+G IF++NL + + F +G + + ID E +KG+ V F E A A
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAI 177
Query: 396 QHLDGTVFLGRMLHLIPGKPK 416
Q ++G + G+ + + +P+
Sbjct: 178 QKVNGMLLAGKKVFVGKFQPR 198
Score = 82 (33.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
K T E+L AKF G +T ++ T EGK + F F+ + ++A+ A+ +++ + +
Sbjct: 226 KETLEKLFAKF---GNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTD 281
Query: 88 IKVEKC 93
+K+ C
Sbjct: 282 LKLHVC 287
Score = 75 (31.5 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+KNL+ +D +++ F+ G I S V ++ +S G +GFV F E
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKG------FGFVCFEKPEEATS 372
Query: 643 ALKVLQNSSL 652
A+ + NS +
Sbjct: 373 AVTEM-NSKM 381
Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L V E L + F GP+ + + D T + G+A V F P A +A +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ G+ + ++ P + GN+
Sbjct: 94 NFEALHGKPMRIMWSQRDPAMRRSGAGNI 122
Score = 57 (25.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
LG AY+ F+ + +A++ N GK + I +D + + SGA +
Sbjct: 73 LGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGN 121
Score = 40 (19.1 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRR-FAFIGYHREDQAQAALDYFN 79
+ + L KF G V +++ + +A++ + + A+ A+D N
Sbjct: 43 VNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 154 (59.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 44/170 (25%), Positives = 79/170 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + ++ + + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFLPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 123 (48.4 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 42/163 (25%), Positives = 77/163 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGDDMNDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+E+F +G V++ +G +GFGFV F +A++A+
Sbjct: 208 KEMFGKYGPALSVKVMTD--DNGKSKGFGFVSFERHEDAQKAV 248
Score = 119 (46.9 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 70/287 (24%), Positives = 120/287 (41%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ D N + N + +KS+++ + E ++++N + ++ L ++
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F KYGP V + D + K+KGF V+F E A +A ++G G+ + + G+ +
Sbjct: 211 FGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 87 (35.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V GR + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 65 (27.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KG+ + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 16/75 (21%), Positives = 33/75 (44%)
Query: 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIG 64
S P P + + DL + +T+ L KF G + +++ + + +A++
Sbjct: 4 SAPSYPMASLYVGDLHQ-----DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN 58
Query: 65 YHREDQAQAALDYFN 79
+ + A+ ALD N
Sbjct: 59 FQQPADAERALDTMN 73
Score = 43 (20.2 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + + F+ + ++ A+ A+D N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGRPVRIMWS 87
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 153 (58.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 44/170 (25%), Positives = 78/170 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP S+ V KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + ++ Q+ + R+ + E + T +KRK + + G + V+N+
Sbjct: 245 QRAVDEMNGKEMNGKQVYVGRAQKKGERQ-TELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GLDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 134 (52.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 48/194 (24%), Positives = 91/194 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETHEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR-----AKEF-TNVYIKNFGEDMDDEKL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+E+F +G +R+ SG +GFGFV F +A+RA+ + + G+++ +
Sbjct: 208 KEIFCKYGPALSIRVMTD--DSGKSKGFGFVSFERHEDAQRAVDEM-NGKEMNGKQVYVG 264
Query: 763 WAEEADNVEDIRKR 776
A++ + KR
Sbjct: 265 RAQKKGERQTELKR 278
Score = 123 (48.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 70/288 (24%), Positives = 121/288 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETHEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L ++
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEI 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP- 415
F KYGP + + D ++ K+KGF V+F E A +A ++G G+ +++ G+
Sbjct: 211 FCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV--GRAQ 267
Query: 416 KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL 474
K+ E + K RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KKGERQTELK-------RKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTI 320
Query: 475 GRVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 321 TSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 86 (35.3 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 32/123 (26%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V GR + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 65 (27.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KG+ + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 49 (22.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
+T+ L KF G + +++ + + +A++ + + A+ ALD N
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMN 73
Score = 38 (18.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGRPVRIMWS 87
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 146 (56.5 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 52/195 (26%), Positives = 92/195 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL + ++ F G I S VA + G S G+GFV F T E+ Q
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH----G---SRGFGFVHFETHEAAQQ 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L++ ++ + E EA R A + + I V+N+P + +
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGAR-----ALEF-TNIYVKNLPVDVDEQGL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG++ V++ + SG R FGFV F EA++A+ + + GR L
Sbjct: 208 QDLFSQFGKMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHM-NGKEVSGRLLYAG 264
Query: 763 WAEE-ADNVEDIRKR 776
A++ + ++++R
Sbjct: 265 RAQKRVERQNELKRR 279
Score = 107 (42.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 44/159 (27%), Positives = 73/159 (45%)
Query: 319 HWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+ E + E I+V+NL V E L LF ++G + V + D + +
Sbjct: 172 HFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
+ F V F E A +A H++G GR+L+ G+ ++ V+ + +E K
Sbjct: 231 RCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA--GRAQKR---VERQ-----NELKR-R 279
Query: 438 FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFG 472
F Q+ + R +R + VKNL L+ F P+G
Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG 318
Score = 90 (36.7 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 29/134 (21%), Positives = 56/134 (41%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL + E ++ F + G + SV V R G S +GFV F E
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS----GH--SRCFGFVNFEKHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + + + R+ + +E + +R K + + G + V+N+
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 697 AKQSEVEELFKAFG 710
++ + F +G
Sbjct: 305 IDDDKLRKEFSPYG 318
Score = 83 (34.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ + G+ + ++ PG K GN+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNI 101
Score = 69 (29.3 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L F +G + + D+ ++GF V F E A QA
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAIN 156
Query: 397 HLDGTVFLGR 406
++G + R
Sbjct: 157 TMNGMLLNDR 166
Score = 62 (26.9 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N KG+ + I +D + SG +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGN 100
Score = 61 (26.5 bits), Expect = 0.00083, Sum P(4) = 0.00083
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK 616
LY+KNL+ + +D +R+ F G I S R++
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKKRRQR 329
Score = 52 (23.4 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
+T+ L KF G + +++ + + +A+I + + A+ ALD N
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Score = 46 (21.3 bits), Expect = 0.00083, Sum P(4) = 0.00083
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 507
I VKNLP L+ LF FG + +V+ G + F+ + + A ++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 508 FKEV 511
KEV
Sbjct: 253 GKEV 256
Score = 42 (19.8 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL-----VPPYGITGL--VEFLQKNQAKAAFNS 502
I +KNL D KAL++ F G +L +G G V F A+ A N+
Sbjct: 101 IFIKNLEDSI---DNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINT 157
Query: 503 L 503
+
Sbjct: 158 M 158
Score = 40 (19.1 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEMLKGQPIRIMWS 87
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 142 (55.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 41/169 (24%), Positives = 78/169 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K G SV V KS G +GFV F + E+
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG------FGFVSFDSHEAA 243
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A++ + ++ I + R+ + +E +A + K + G K+ ++N+
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 303
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
++ F +FG + V++ M G +GFG + F + +A +AM
Sbjct: 304 IDDEKLRNEFSSFGSISRVKV---MQEEGQSKGFGLICFSSPEDATKAM 349
Score = 123 (48.4 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 39/166 (23%), Positives = 78/166 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ HF G I S V D + S GY FV F + + ++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQG-----SKGYAFVHFQNQSAADR 152
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L ++ + R + EA ++ K+S + + ++N +
Sbjct: 153 AIEEMNGKLLKGCKVFVGRFKNRKDREAE-LRSKASEF-----TNVYIKNFGGDMDDERL 206
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+++F +G+ V++ SG +GFGFV F + AK+A++ +
Sbjct: 207 KDVFSKYGKTLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEM 250
Score = 114 (45.2 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 61/263 (23%), Positives = 118/263 (44%)
Query: 236 VKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKD 295
+K K ++ + A +R + +G +I D+ NK L ++ S + GK L+ S D
Sbjct: 76 IKGKSIRLMWSQRD-AYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAF-GKILSSKVMSDD 133
Query: 296 NSAK-YSGAADDNNNAS---MENIKAK----------HWKSQED-SVQFAEDIAESGRIF 340
+K Y+ N +A+ +E + K +K+++D + +E ++
Sbjct: 134 QGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVY 193
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
++N + ++ L +F KYG V + D + K+KGF V+F E A +A + ++G
Sbjct: 194 IKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI----ILVKNLP 456
G+++ + G+ ++ V+ + +E K F Q+ R + + +KNL
Sbjct: 253 RDINGQLIFV--GRAQKK---VERQ-----AELK-QMFEQLKRERIRGCQGVKLYIKNLD 301
Query: 457 YRTLPTDLKALFEPFGDLGRVLV 479
L+ F FG + RV V
Sbjct: 302 DTIDDEKLRNEFSSFGSISRVKV 324
Score = 105 (42.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+++++NL T+ ++ L F +G ++ V + +E ++KGF L+ F PE AT+A
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRV--KVMQEEGQSKGFGLICFSSPEDATKAMTE 351
Query: 398 LDGTVFLG 405
++G + LG
Sbjct: 352 MNGRI-LG 358
Score = 88 (36.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L + F GP+ + + D+ T ++ G+A V FL A +A +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 399 DGTVFLGRMLHLI 411
+ + G+ + L+
Sbjct: 72 NFDIIKGKSIRLM 84
Score = 78 (32.5 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LYIKNL+ ++ +R F G I+ V V +++ GQ S G+G + F + E +
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-----GQ--SKGFGLICFSSPEDATK 347
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A+ + L + + + R+
Sbjct: 348 AMTEMNGRILGSKPLSIALAQRH 370
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
E+LK F + G V++ + GK + F F+ + + A+ A++ N
Sbjct: 204 ERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Score = 57 (25.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F + KAL+ N KGK + + +D + SG + N + S++
Sbjct: 51 LGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSID 110
Query: 314 N 314
N
Sbjct: 111 N 111
Score = 50 (22.7 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T++ L KF G V +++ + + +A++ + + AQ ALD N +
Sbjct: 21 VTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKS 80
Query: 88 IKV 90
I++
Sbjct: 81 IRL 83
Score = 39 (18.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
V FLQ A+ A +++ + K + L W+ +
Sbjct: 56 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAY 91
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 131 (51.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 44/141 (31%), Positives = 69/141 (48%)
Query: 616 KDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR 675
KD +S G+ S G+G+V F + E ALK EH + NR LE + T K
Sbjct: 36 KD-RSTGR--SRGFGYVTFASAEDAKNALK-------GEHFL----GNRILEVKVATPKE 81
Query: 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ AK+ ++I V IP +S+ F+ +GE+ + +PK S HRG GF+ F
Sbjct: 82 EMRQPAKKV-TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY-NSKQHRGIGFITF 139
Query: 736 ITKNEAKRAMKALCQSTHLYG 756
+ + +++ L + TH G
Sbjct: 140 SSAD----SVEDLMEDTHDLG 156
Score = 110 (43.8 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
G+KI V +P +A ++ + F FG ++ +PK SG HRGFGFV F A R
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSG-HRGFGFVTFAENGVADRV 297
Query: 745 MKALCQSTHLYGRRLVLEWAEEAD 768
+ +S + G+ + ++ A D
Sbjct: 298 AR---RSHEICGQEVAIDSATPLD 318
Score = 104 (41.7 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++ V + + + D L K+G L + I+ D+ T +++GF VTF E A A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA--- 60
Query: 398 LDGTVFLG-RMLHLIPGKPKE 417
L G FLG R+L + PKE
Sbjct: 61 LKGEHFLGNRILEVKVATPKE 81
Score = 94 (38.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 28/121 (23%), Positives = 56/121 (46%)
Query: 265 FKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQE 324
F D ++C + K++S + + ++ AK A + ++ K +E
Sbjct: 26 FGDLEDC--IVMKDRSTGRSRGFGYVTFASAEDAK--NALKGEHFLGNRILEVKVATPKE 81
Query: 325 DSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
+ Q A+ + RIFV + +V+E D FE+YG + ++ +P D + + +G +T
Sbjct: 82 EMRQPAKKVT---RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFIT 138
Query: 385 F 385
F
Sbjct: 139 F 139
Score = 61 (26.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
+++ L ++ D +R +F + G I + KDPK G G+GFV F
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIP--KDPKRSGH---RGFGFVTF 288
Score = 59 (25.8 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++ + + +E R HF++ G I + + PK G GF+ F + +S+
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYM-----PKDYNSKQHRGIGFITFSSADSV 145
Query: 641 NQALK 645
++
Sbjct: 146 EDLME 150
Score = 45 (20.9 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 430 ISERKLDAFNQVVEARSKRI--ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP 480
I E K+ + + +K++ I V +P +D ++ FE +G++ + +P
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 447 KRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG 486
+R ++V +P+ LK FGDL +V TG
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTG 41
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 145 (56.1 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
Identities = 48/184 (26%), Positives = 91/184 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++ ++E++++ FKK I K P++ Q GY FV+F T E
Sbjct: 460 TLIVNNLSYAASEETLQELFKKATSI--------KMPQN-NQGRPKGYAFVEFPTAEDAK 510
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL N+ ++ I L+ S+ + + + R N +T + VR + +
Sbjct: 511 EALNSCNNTEIEGRAIRLEFSSPSWQ-KGNMNARGGFNQQSKT---LFVRGLSEDTTEET 566
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ E F+ G + + + GS +GFGFV+F + +AK A +A+ + + G ++ L
Sbjct: 567 LRESFE--GSISARIVTDRDTGSS--KGFGFVDFSSPEDAKAAKEAM-EDGEIDGNKVTL 621
Query: 762 EWAE 765
++A+
Sbjct: 622 DFAK 625
Score = 132 (51.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 46/190 (24%), Positives = 98/190 (51%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+L++KNL + +R K+ ++ V+ + G S +G+V F + E ++
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI----GS--SKRFGYVDFLSAEDMD 333
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL+ L L +I+L+++ ++ ES K + + + V+N+P++ + E
Sbjct: 334 KALQ-LNGKKLMGLEIKLEKA-KSKESLKENKKERDART-------LFVKNLPYRVTEDE 384
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++ +F+ E++ V L K+ G +G ++EF T+ EA++A++ Q T + GR +V+
Sbjct: 385 MKNVFENALEVRLV-LNKE----GSSKGMAYIEFKTEAEAEKALEEK-QGTEVDGRAMVI 438
Query: 762 EWAEEADNVE 771
++ E E
Sbjct: 439 DYTGEKSQQE 448
Score = 129 (50.5 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 78/303 (25%), Positives = 127/303 (41%)
Query: 230 KNLPAGVKKKDLKAYF-KPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLN 288
++L K++D + F K LP R T M + F++ LNK S KG
Sbjct: 357 ESLKENKKERDARTLFVKNLPY---RVTEDEMKNV-FENALEVRLVLNKEGSS-KGMAYI 411
Query: 289 IYKYSKDNSAKYSGAADDNNNASMEN----IKAKHWKSQEDSVQFAEDIAESGRIFVRNL 344
+K A+ A ++ ++ I KSQ++S + + ES + V NL
Sbjct: 412 EFK----TEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE-RESKTLIVNNL 466
Query: 345 SYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL 404
SY +E+ L +LF+K + +P + + + KG+A V F E A +A + T
Sbjct: 467 SYAASEETLQELFKK---ATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNNTEIE 522
Query: 405 GRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDL 464
GR + L P +GN++ + FNQ +SK + V+ L T L
Sbjct: 523 GRAIRLEFSSPSWQKGNMNAR----------GGFNQ----QSKTLF-VRGLSEDTTEETL 567
Query: 465 KALFEPFGDLGRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA-PE 520
+ FE V G + G V+F AKAA ++ + + L++A P+
Sbjct: 568 RESFEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 627
Query: 521 GVF 523
G F
Sbjct: 628 GEF 630
Score = 84 (34.6 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFK-PLPLASVRT---TFLGMAYIGFKDEKNCNKALN 276
+R T+ VKNLP V + ++K F+ L + V + GMAYI FK E KAL
Sbjct: 365 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 424
Query: 277 KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQ 328
+ + + + Y+ + S + S + + + + E+++Q
Sbjct: 425 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQ 476
Score = 71 (30.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
Y++T++++K FE +V+L EG + A+I + E +A+ AL+ T V
Sbjct: 378 YRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEV 431
Score = 57 (25.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 29/125 (23%), Positives = 50/125 (40%)
Query: 198 KTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDL----KAYF--KPLPLA 251
K + +AP KAP ++ VKNL ++L K +F K L ++
Sbjct: 255 KEMANKSAPEAKKKKTEIKAPASA---FSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVS 311
Query: 252 SVRT-TFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNA 310
VR + Y+ F ++ +KAL N G ++ + K S K + D
Sbjct: 312 EVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTL 371
Query: 311 SMENI 315
++N+
Sbjct: 372 FVKNL 376
Score = 51 (23.0 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91
E+L+ +E ++Q+ G +RF ++ + + AL N + IK+E
Sbjct: 293 EELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLE 351
Query: 92 KCSN 95
K +
Sbjct: 352 KAKS 355
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 145 (56.1 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 48/184 (26%), Positives = 91/184 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++ ++E++++ FKK I K P++ Q GY FV+F T E
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSI--------KMPQN-NQGRPKGYAFVEFPTAEDAK 512
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL N+ ++ I L+ S+ + + + R N +T + VR + +
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQ-KGNMNARGGFNQQSKT---LFVRGLSEDTTEET 568
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ E F+ G + + + GS +GFGFV+F + +AK A +A+ + + G ++ L
Sbjct: 569 LRESFE--GSISARIVTDRDTGSS--KGFGFVDFSSPEDAKAAKEAM-EDGEIDGNKVTL 623
Query: 762 EWAE 765
++A+
Sbjct: 624 DFAK 627
Score = 132 (51.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 46/190 (24%), Positives = 98/190 (51%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+L++KNL + +R K+ ++ V+ + G S +G+V F + E ++
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI----GS--SKRFGYVDFLSAEDMD 335
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL+ L L +I+L+++ ++ ES K + + + V+N+P++ + E
Sbjct: 336 KALQ-LNGKKLMGLEIKLEKA-KSKESLKENKKERDART-------LFVKNLPYRVTEDE 386
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++ +F+ E++ V L K+ G +G ++EF T+ EA++A++ Q T + GR +V+
Sbjct: 387 MKNVFENALEVRLV-LNKE----GSSKGMAYIEFKTEAEAEKALEEK-QGTEVDGRAMVI 440
Query: 762 EWAEEADNVE 771
++ E E
Sbjct: 441 DYTGEKSQQE 450
Score = 129 (50.5 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 78/303 (25%), Positives = 127/303 (41%)
Query: 230 KNLPAGVKKKDLKAYF-KPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLN 288
++L K++D + F K LP R T M + F++ LNK S KG
Sbjct: 359 ESLKENKKERDARTLFVKNLPY---RVTEDEMKNV-FENALEVRLVLNKEGSS-KGMAYI 413
Query: 289 IYKYSKDNSAKYSGAADDNNNASMEN----IKAKHWKSQEDSVQFAEDIAESGRIFVRNL 344
+K A+ A ++ ++ I KSQ++S + + ES + V NL
Sbjct: 414 EFK----TEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE-RESKTLIVNNL 468
Query: 345 SYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL 404
SY +E+ L +LF+K + +P + + + KG+A V F E A +A + T
Sbjct: 469 SYAASEETLQELFKK---ATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNNTEIE 524
Query: 405 GRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDL 464
GR + L P +GN++ + FNQ +SK + V+ L T L
Sbjct: 525 GRAIRLEFSSPSWQKGNMNAR----------GGFNQ----QSKTLF-VRGLSEDTTEETL 569
Query: 465 KALFEPFGDLGRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA-PE 520
+ FE V G + G V+F AKAA ++ + + L++A P+
Sbjct: 570 RESFEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
Query: 521 GVF 523
G F
Sbjct: 630 GEF 632
Score = 84 (34.6 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFK-PLPLASVRT---TFLGMAYIGFKDEKNCNKALN 276
+R T+ VKNLP V + ++K F+ L + V + GMAYI FK E KAL
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 277 KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQ 328
+ + + + Y+ + S + S + + + + E+++Q
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQ 478
Score = 71 (30.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
Y++T++++K FE +V+L EG + A+I + E +A+ AL+ T V
Sbjct: 380 YRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEV 433
Score = 67 (28.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDL-TKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
E A + +FV+NL+ T ++L T + E +G + + +K F V FL E
Sbjct: 275 ETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV--RIGSSKRFGYVDFLSAE 332
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
+A Q L+G +G + L K KE+
Sbjct: 333 DMDKALQ-LNGKKLMGLEIKLEKAKSKES 360
Score = 53 (23.7 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 226 TIVVKNLPAGVKKKDL----KAYF--KPLPLASVRT-TFLGMAYIGFKDEKNCNKALNKN 278
++ VKNL ++L K +F K L ++ VR + Y+ F ++ +KAL N
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLN 341
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI 315
G ++ + K S K + D ++N+
Sbjct: 342 GKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNL 378
Score = 51 (23.0 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91
E+L+ +E ++Q+ G +RF ++ + + AL N + IK+E
Sbjct: 295 EELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLE 353
Query: 92 KCSN 95
K +
Sbjct: 354 KAKS 357
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 145 (56.1 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 48/184 (26%), Positives = 91/184 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++ ++E++++ FKK I K P++ Q GY FV+F T E
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSI--------KMPQN-NQGRPKGYAFVEFPTAEDAK 512
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL N+ ++ I L+ S+ + + + R N +T + VR + +
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQ-KGNMNARGGFNQQSKT---LFVRGLSEDTTEET 568
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ E F+ G + + + GS +GFGFV+F + +AK A +A+ + + G ++ L
Sbjct: 569 LRESFE--GSISARIVTDRDTGSS--KGFGFVDFSSPEDAKAAKEAM-EDGEIDGNKVTL 623
Query: 762 EWAE 765
++A+
Sbjct: 624 DFAK 627
Score = 132 (51.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 46/190 (24%), Positives = 98/190 (51%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+L++KNL + +R K+ ++ V+ + G S +G+V F + E ++
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRI----GS--SKRFGYVDFLSAEDMD 335
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL+ L L +I+L+++ ++ ES K + + + V+N+P++ + E
Sbjct: 336 KALQ-LNGKKLMGLEIKLEKA-KSKESLKENKKERDART-------LFVKNLPYRVTEDE 386
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
++ +F+ E++ V L K+ G +G ++EF T+ EA++A++ Q T + GR +V+
Sbjct: 387 MKNVFENALEVRLV-LNKE----GSSKGMAYIEFKTEAEAEKALEEK-QGTEVDGRAMVI 440
Query: 762 EWAEEADNVE 771
++ E E
Sbjct: 441 DYTGEKSQQE 450
Score = 129 (50.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 78/303 (25%), Positives = 127/303 (41%)
Query: 230 KNLPAGVKKKDLKAYF-KPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLN 288
++L K++D + F K LP R T M + F++ LNK S KG
Sbjct: 359 ESLKENKKERDARTLFVKNLPY---RVTEDEMKNV-FENALEVRLVLNKEGSS-KGMAYI 413
Query: 289 IYKYSKDNSAKYSGAADDNNNASMEN----IKAKHWKSQEDSVQFAEDIAESGRIFVRNL 344
+K A+ A ++ ++ I KSQ++S + + ES + V NL
Sbjct: 414 EFK----TEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGE-RESKTLIVNNL 468
Query: 345 SYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL 404
SY +E+ L +LF+K + +P + + + KG+A V F E A +A + T
Sbjct: 469 SYAASEETLQELFKK---ATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNNTEIE 524
Query: 405 GRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDL 464
GR + L P +GN++ + FNQ +SK + V+ L T L
Sbjct: 525 GRAIRLEFSSPSWQKGNMNAR----------GGFNQ----QSKTLF-VRGLSEDTTEETL 569
Query: 465 KALFEPFGDLGRVLVPPYGIT---GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA-PE 520
+ FE V G + G V+F AKAA ++ + + L++A P+
Sbjct: 570 RESFEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
Query: 521 GVF 523
G F
Sbjct: 630 GEF 632
Score = 84 (34.6 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFK-PLPLASVRT---TFLGMAYIGFKDEKNCNKALN 276
+R T+ VKNLP V + ++K F+ L + V + GMAYI FK E KAL
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 277 KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQ 328
+ + + + Y+ + S + S + + + + E+++Q
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQ 478
Score = 71 (30.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
Y++T++++K FE +V+L EG + A+I + E +A+ AL+ T V
Sbjct: 380 YRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEV 433
Score = 67 (28.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDL-TKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
E A + +FV+NL+ T ++L T + E +G + + +K F V FL E
Sbjct: 275 ETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV--RIGSSKRFGYVDFLSAE 332
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
+A Q L+G +G + L K KE+
Sbjct: 333 DMDKALQ-LNGKKLMGLEIKLEKAKSKES 360
Score = 53 (23.7 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 226 TIVVKNLPAGVKKKDL----KAYF--KPLPLASVRT-TFLGMAYIGFKDEKNCNKALNKN 278
++ VKNL ++L K +F K L ++ VR + Y+ F ++ +KAL N
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLN 341
Query: 279 KSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI 315
G ++ + K S K + D ++N+
Sbjct: 342 GKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNL 378
Score = 51 (23.0 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVE 91
E+L+ +E ++Q+ G +RF ++ + + AL N + IK+E
Sbjct: 295 EELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLE 353
Query: 92 KCSN 95
K +
Sbjct: 354 KAKS 357
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 177 (67.4 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 52/208 (25%), Positives = 102/208 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L++N + ++R F+ G + V ++ + G+ S GYG+V F ++ +
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMER---ATGK--SRGYGYVDFESKSAAE 223
Query: 642 QALKVLQNSSLDEHQIELKRSN-RNLESEATTVKRKSSNVAKQTGSKIL-VRNIPFQAKQ 699
+AL+ +Q +D I L S + S++ + K ++ S L + N+ F A +
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANR 283
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+ +F +G + R+P + +GFG+V+F + +EAK A++A+ ++ GR
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHP-DTQQPKGFGYVQFSSVDEAKAALEAM-NGEYIEGRPC 341
Query: 760 VLEWAEEADNVEDIRKRTNRY-FGTAVG 786
L+++ DN + R FG G
Sbjct: 342 RLDFSTPRDNTNNNNNNNRRGGFGGGFG 369
Score = 126 (49.4 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 33/115 (28%), Positives = 52/115 (45%)
Query: 309 NASMENIKAKHWKSQEDSV-QFAEDIAE-SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEV 366
N M K KS D Q+ + + S +F+ NLS+ D+L +F +YG +
Sbjct: 240 NLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISC 299
Query: 367 ILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGN 421
+P +T + KGF V F + A A + ++G GR L P++N N
Sbjct: 300 RVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
Score = 48 (22.0 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG 337
S D+S+ S D++++ E ++ K S E + ++ + SG
Sbjct: 49 SDDSSSSSSDEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSG 93
Score = 47 (21.6 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 29/133 (21%), Positives = 52/133 (39%)
Query: 190 SDMEYLKLKTKSKDTAPSDPSVP-PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL 248
SD E K + + + + S P SK + T+ V L + LK F+ +
Sbjct: 132 SDSEEEPSKKRKAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHI 191
Query: 249 P------LASVRTT--FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY 300
+ R T G Y+ F+ + KAL + +GK+++ + D S
Sbjct: 192 GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE----MQGKEIDGRPINLDMSTGK 247
Query: 301 SGAADDNNNASME 313
A+ NN+ + +
Sbjct: 248 PHASKSNNDRAKQ 260
Score = 40 (19.1 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 122 APKQDLKPEHTKDSKPGKKSKND 144
A K D K K+ KP KK + +
Sbjct: 4 ASKVDKKLSKKKEEKPAKKVEEE 26
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 177 (67.4 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 52/208 (25%), Positives = 102/208 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++ L++N + ++R F+ G + V ++ + G+ S GYG+V F ++ +
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMER---ATGK--SRGYGYVDFESKSAAE 223
Query: 642 QALKVLQNSSLDEHQIELKRSN-RNLESEATTVKRKSSNVAKQTGSKIL-VRNIPFQAKQ 699
+AL+ +Q +D I L S + S++ + K ++ S L + N+ F A +
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANR 283
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+ +F +G + R+P + +GFG+V+F + +EAK A++A+ ++ GR
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHP-DTQQPKGFGYVQFSSVDEAKAALEAM-NGEYIEGRPC 341
Query: 760 VLEWAEEADNVEDIRKRTNRY-FGTAVG 786
L+++ DN + R FG G
Sbjct: 342 RLDFSTPRDNTNNNNNNNRRGGFGGGFG 369
Score = 126 (49.4 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 33/115 (28%), Positives = 52/115 (45%)
Query: 309 NASMENIKAKHWKSQEDSV-QFAEDIAE-SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEV 366
N M K KS D Q+ + + S +F+ NLS+ D+L +F +YG +
Sbjct: 240 NLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISC 299
Query: 367 ILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGN 421
+P +T + KGF V F + A A + ++G GR L P++N N
Sbjct: 300 RVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNN 354
Score = 48 (22.0 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG 337
S D+S+ S D++++ E ++ K S E + ++ + SG
Sbjct: 49 SDDSSSSSSDEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSG 93
Score = 47 (21.6 bits), Expect = 4.9e-05, Sum P(3) = 4.9e-05
Identities = 29/133 (21%), Positives = 52/133 (39%)
Query: 190 SDMEYLKLKTKSKDTAPSDPSVP-PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL 248
SD E K + + + + S P SK + T+ V L + LK F+ +
Sbjct: 132 SDSEEEPSKKRKAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHI 191
Query: 249 P------LASVRTT--FLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY 300
+ R T G Y+ F+ + KAL + +GK+++ + D S
Sbjct: 192 GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE----MQGKEIDGRPINLDMSTGK 247
Query: 301 SGAADDNNNASME 313
A+ NN+ + +
Sbjct: 248 PHASKSNNDRAKQ 260
Score = 40 (19.1 bits), Expect = 7.7e-11, Sum P(3) = 7.7e-11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 122 APKQDLKPEHTKDSKPGKKSKND 144
A K D K K+ KP KK + +
Sbjct: 4 ASKVDKKLSKKKEEKPAKKVEEE 26
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 142 (55.0 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 41/169 (24%), Positives = 78/169 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K G SV V KS G +GFV F + E+
Sbjct: 248 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG------FGFVSFDSHEAA 301
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A++ + ++ I + R+ + +E +A + K + G K+ ++N+
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 361
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
++ F +FG + V++ M G +GFG + F + +A +AM
Sbjct: 362 IDDEKLRNEFSSFGSISRVKV---MQEEGQSKGFGLICFSSPEDATKAM 407
Score = 123 (48.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 39/166 (23%), Positives = 78/166 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ HF G I S V D + S GY FV F + + ++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVM--SDDQG-----SKGYAFVHFQNQSAADR 210
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L ++ + R + EA ++ K+S + + ++N +
Sbjct: 211 AIEEMNGKLLKGCKVFVGRFKNRKDREAE-LRSKASEF-----TNVYIKNFGGDMDDERL 264
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+++F +G+ V++ SG +GFGFV F + AK+A++ +
Sbjct: 265 KDVFSKYGKTLSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEM 308
Score = 114 (45.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 61/263 (23%), Positives = 118/263 (44%)
Query: 236 VKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKD 295
+K K ++ + A +R + +G +I D+ NK L ++ S + GK L+ S D
Sbjct: 134 IKGKSIRLMWSQRD-AYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAF-GKILSSKVMSDD 191
Query: 296 NSAK-YSGAADDNNNAS---MENIKAK----------HWKSQED-SVQFAEDIAESGRIF 340
+K Y+ N +A+ +E + K +K+++D + +E ++
Sbjct: 192 QGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVY 251
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
++N + ++ L +F KYG V + D + K+KGF V+F E A +A + ++G
Sbjct: 252 IKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI----ILVKNLP 456
G+++ + G+ ++ V+ + +E K F Q+ R + + +KNL
Sbjct: 311 RDINGQLIFV--GRAQKK---VERQ-----AELK-QMFEQLKRERIRGCQGVKLYIKNLD 359
Query: 457 YRTLPTDLKALFEPFGDLGRVLV 479
L+ F FG + RV V
Sbjct: 360 DTIDDEKLRNEFSSFGSISRVKV 382
Score = 105 (42.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+++++NL T+ ++ L F +G ++ V + +E ++KGF L+ F PE AT+A
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRV--KVMQEEGQSKGFGLICFSSPEDATKAMTE 409
Query: 398 LDGTVFLG 405
++G + LG
Sbjct: 410 MNGRI-LG 416
Score = 88 (36.0 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L + F GP+ + + D+ T ++ G+A V FL A +A +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 399 DGTVFLGRMLHLI 411
+ + G+ + L+
Sbjct: 130 NFDIIKGKSIRLM 142
Score = 78 (32.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LYIKNL+ ++ +R F G I+ V V +++ GQ S G+G + F + E +
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-----GQ--SKGFGLICFSSPEDATK 405
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A+ + L + + + R+
Sbjct: 406 AMTEMNGRILGSKPLSIALAQRH 428
Score = 64 (27.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
E+LK F + G V++ + GK + F F+ + + A+ A++ N
Sbjct: 262 ERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Score = 57 (25.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F + KAL+ N KGK + + +D + SG + N + S++
Sbjct: 109 LGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSID 168
Query: 314 N 314
N
Sbjct: 169 N 169
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T++ L KF G V +++ + + +A++ + + AQ ALD N +
Sbjct: 79 VTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKS 138
Query: 88 IKV 90
I++
Sbjct: 139 IRL 141
Score = 39 (18.8 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVF 523
V FLQ A+ A +++ + K + L W+ +
Sbjct: 114 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAY 149
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 123 (48.4 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 33/141 (23%), Positives = 65/141 (46%)
Query: 268 EKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSV 327
++ N+ N+N+S N + +N+ + ++NNN + ++ K + + D
Sbjct: 50 QEEINQQQNENQSLQINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSVNNKELELERDQT 109
Query: 328 QFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM 387
+FV++L Y ++DL LF KYG + + ID + + + G+ V F
Sbjct: 110 N----------VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN-SYGYGFVRFSS 158
Query: 388 PEHATQAYQHLDGTVFLGRML 408
P+ + A + LDG + + L
Sbjct: 159 PQESAAAIEELDGYQYQNKKL 179
Score = 91 (37.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV +L V + L +LF ++G L V + DK+T + KG+ V F + A + + +
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGKVH 427
+G + L + KE+ + GK H
Sbjct: 831 NGFRIGSKFLKVKLKNEKESMNS--GKSH 857
Score = 89 (36.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKE-TDKTKGFALVTFLMPEHATQA 394
S +F++ L Y VT+D L KLFE +G + E + +D K GF V F A++A
Sbjct: 196 SNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGF--VRFSSELDASKA 253
Query: 395 YQHLDG 400
++G
Sbjct: 254 IDAMNG 259
Score = 85 (35.0 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725
L + ++++ S + + V ++P S + +LF FG+L+ VR+ +G
Sbjct: 749 LSASSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDK-DTG 807
Query: 726 LHRGFGFVEFITKNEAKRAMKAL 748
++G+GFV+F +EA + K +
Sbjct: 808 ENKGYGFVKFYQTDEALKCQKEM 830
Score = 77 (32.2 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYG---ITGLVEF---LQKNQAKAAFN 501
+ +K LPY L+ LFEPFG + +V++ G G V F L ++A A N
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMN 258
Query: 502 SLAYTKFKEVPLYLEWA 518
+ K PL +++A
Sbjct: 259 GVRINKDSGYPLVVKYA 275
Score = 76 (31.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 439 NQVVEA-RSKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGIT---GLVEFLQ 492
N+ +E R + + VK+LPY DL+ LF +G + +V++ P G + G V F
Sbjct: 99 NKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSS 158
Query: 493 KNQAKAAFNSL 503
++ AA L
Sbjct: 159 PQESAAAIEEL 169
Score = 73 (30.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
DT L++ +L + + + F + G + SV V KD G+ + GYGFV+FY +
Sbjct: 768 DTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDT---GE--NKGYGFVKFYQTDE 822
Query: 640 LNQALKVLQNSSLDEH--QIELKRSNRNLESEATTVKRKSSN 679
+ K + + +++LK ++ S + + ++ N
Sbjct: 823 ALKCQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQN 864
Score = 72 (30.4 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 26/121 (21%), Positives = 48/121 (39%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
Y +T +QL+ FE G + + ++ G+ + F+ + E A A+D N + +
Sbjct: 206 YDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRI-NK 264
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQK---LHNIAPKQDLKPEHTKDSKPGKKSKN 143
DT + K K + YQ+ I P Q L+P ++ + N
Sbjct: 265 DSGYPLVVKYADTEQQKISRKQRKMQTIYQEKIIAPPIFPPQFLQPTVLPNNNNNNNNNN 324
Query: 144 D 144
+
Sbjct: 325 N 325
Score = 59 (25.8 bits), Expect = 5.7e-09, Sum P(3) = 5.7e-09
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+IK L ++ T+D +R+ F+ G I V D +F GFV+F + ++
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVML--DHNGQSKFA----GFVRFSSELDASK 252
Query: 643 ALKVLQNSSLDE 654
A+ + +++
Sbjct: 253 AIDAMNGVRINK 264
Score = 56 (24.8 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 269 KNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN 314
KNCN +N+ NK+F K LNI + +N+ + ++NNN + N
Sbjct: 653 KNCN--INEVNKNFSK---LNIDNNNNNNNNNNNNNNNNNNNNNNNN 694
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 151 (58.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 44/160 (27%), Positives = 74/160 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ + F FG + ++ M+ G +GFGFV F
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCF 340
Score = 133 (51.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 120 (47.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 59/239 (24%), Positives = 107/239 (44%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL 474
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320
Score = 82 (33.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 43 (20.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
I +KNL +++ D KAL++ F G +L
Sbjct: 101 IFIKNLD-KSI--DNKALYDTFSAFGNIL 126
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 40/169 (23%), Positives = 76/169 (44%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ +R F + G SV V +S G +GFV F E
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKG------FGFVNFEKHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + ++ + + R+ + LE ++ ++ K V++ G + V+N+
Sbjct: 245 QKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDG 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F +G + ++ M G +GFGFV F + EA +A+
Sbjct: 305 IDDERLRKEFSPYGTITSAKV---MTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 45/184 (24%), Positives = 87/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S G+GFV F T+E+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDEN----G---SRGHGFVHFETQEAATR 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + E EA R A + + + ++N + +
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRKEREAEFGAR-----AMEF-TNVYIKNFGDDMDDNRL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
E+F FG+ V++ M +G +GFGFV F EA++A+ + + GR + +
Sbjct: 208 REIFSRFGKTLSVKV--MMDHTGRSKGFGFVNFEKHEEAQKAVADM-NGKEINGRMVYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 122 (48.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 49/206 (23%), Positives = 92/206 (44%)
Query: 319 HWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+++ +F E ++++N + ++ L ++F ++G V + +D T ++
Sbjct: 172 HFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
KGF V F E A +A ++G GRM+++ G+ ++ ++ + +RK +
Sbjct: 231 KGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV--GRAQKR---LERQSEL---KRKFEQ 282
Query: 438 FNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQ 492
Q +R + + L VKNL L+ F P+G + V G G V F
Sbjct: 283 MKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSS 342
Query: 493 KNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 88 (36.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 32/123 (26%), Positives = 57/123 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D + ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V GR + ++ PG K GNV K + I + L D F+ S +++
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 74 (31.1 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +F++NL ++ L F +G + + D+ + GF V F E AT+A Q
Sbjct: 99 GNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGF--VHFETQEAATRAIQ 156
Query: 397 HLDGTVFLGRML---HLIPGKPKENE 419
++G + R + H K +E E
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRKEREAE 182
Score = 61 (26.5 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 27/101 (26%), Positives = 45/101 (44%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KG+ + I +D + SG + N + S++N
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDN 112
Score = 55 (24.4 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIG 64
SGP P + + DL +T+ L KF G + +++ + + +A+I
Sbjct: 4 SGPGYPLASLYVGDLHP-----DVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYIN 58
Query: 65 YHREDQAQAALDYFN 79
+ + A+ ALD N
Sbjct: 59 FQQPADAERALDTMN 73
Score = 42 (19.8 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 431 SERKLDAFN-QVVEARSKRIIL-----------VKNLPYRTLPT--DLKALFEPFGDLGR 476
+ER LD N +V++ R RI+ V N+ + L D KAL++ F G
Sbjct: 65 AERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGN 124
Query: 477 VL 478
+L
Sbjct: 125 IL 126
Score = 37 (18.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPVRIMWS 87
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 154 (59.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 39/129 (30%), Positives = 66/129 (51%)
Query: 301 SGAADDNNNASMENIKAKHWKSQEDSVQFAED------IAESGRIFVRNLSYTVTEDDLT 354
+ +ADD AS+E + + E + E+ E GR++V NL YT+T +L+
Sbjct: 74 ASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELS 133
Query: 355 KLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL-IPG 413
++F + G + +V + DK TD+++GF VT E A +A Q + + GR + + P
Sbjct: 134 QIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPE 193
Query: 414 KPKENEGNV 422
P+ E V
Sbjct: 194 VPRGGENEV 202
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 45/192 (23%), Positives = 84/192 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+ NL + T + + F + G + V + K S G+GFV + E +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDR-----SRGFGFVTMGSIEEAKE 172
Query: 643 ALKVLQNSSLDEHQIELKRSN--RNLESEATTVKRKSSNVAK-QTGSKILVRNIPFQAKQ 699
A+++ +S + +++ R E+E K + +N + + K+ N+ +
Sbjct: 173 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 232
Query: 700 SEVEELFKAFGELKFVRLPKKMV---GSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
+++ AFG+ V L K++ +G RGFGF+ F + + A+ A + G
Sbjct: 233 QGLKD---AFGDQPGV-LGAKVIYERNTGRSRGFGFISFESAENVQSAL-ATMNGVEVEG 287
Query: 757 RRLVLEWAEEAD 768
R L L A E +
Sbjct: 288 RALRLNLASERE 299
Score = 95 (38.5 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYT-TEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
Y IT +L F E GTV DVQ+ Y + R F F+ ++A+ A+ FN++ +
Sbjct: 125 YTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGG 184
Query: 86 SRIKV 90
+KV
Sbjct: 185 RTVKV 189
Score = 77 (32.2 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 338 RIFVRNLSYTVTEDDLTKLF-EKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
+++ NL + +T L F ++ G L ++ ++ T +++GF ++F E+ A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVI-YERNTGRSRGFGFISFESAENVQSALA 278
Query: 397 HLDGTVFLGRMLHL 410
++G GR L L
Sbjct: 279 TMNGVEVEGRALRL 292
Score = 69 (29.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+Y NL +N T ++ F G V A+ ++ G+ S G+GF+ F + E++
Sbjct: 221 VYAGNLGWNLTSQGLKDAF---GDQPGVLGAKVIYERNTGR--SRGFGFISFESAENVQS 275
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKS 677
AL + ++ + L ++ E E TV S
Sbjct: 276 ALATMNGVEVEGRALRLNLAS---EREKPTVSPPS 307
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 152 (58.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 44/170 (25%), Positives = 79/170 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + +D ++ F K G S+ V ++ KS G+GFV F E
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKS------RGFGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + ++ I + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QRAVDEMNGKEMNGKLIYVGRAQKKVERQ-TELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFSPFGTITSAKV---MMDGGRSKGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 43/163 (26%), Positives = 79/163 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDDKL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++F +G +R+ +G RGFGFV F +A+RA+
Sbjct: 208 KDIFSKYGNAMSIRVMTDE--NGKSRGFGFVSFERHEDAQRAV 248
Score = 120 (47.3 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 68/287 (23%), Positives = 120/287 (41%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + +D L +
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDI 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F KYG + + D E K++GF V+F E A +A ++G G+++++ G+ +
Sbjct: 211 FSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 101 (40.6 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 300 YSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEK 359
Y G A E +K K + ++D + + + ++V+NL + ++ L K F
Sbjct: 262 YVGRAQKKVERQTE-LKRKFEQMKQDRMTRYQGV----NLYVKNLDDGIDDERLRKEFSP 316
Query: 360 YGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
+G + + +D ++KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 317 FGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 81 (33.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 36/127 (28%), Positives = 58/127 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPI----DKETDKTKGFALVTFLMPEHATQA 394
++V +L VTE L+EK+ P A IL I D T ++ G+A V F P A +A
Sbjct: 13 LYVGDLHQDVTE---AMLYEKFSP-AGAILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 395 YQHLDGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSK 447
++ V GR + ++ P K GN+ K + I + L D F+ S
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 448 RIILVKN 454
+++ +N
Sbjct: 129 KVVCDEN 135
Score = 79 (32.9 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNT-------YVF 84
++LK F + G +++ GK R F F+ + R + AQ A+D N YV
Sbjct: 205 DKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVG 264
Query: 85 SSRIKVEKCSNL 96
++ KVE+ + L
Sbjct: 265 RAQKKVERQTEL 276
Score = 62 (26.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KG+ + I +D S + SG + N + S++
Sbjct: 52 LGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 314 N 314
N
Sbjct: 112 N 112
Score = 51 (23.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/75 (21%), Positives = 33/75 (44%)
Query: 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIG 64
S P P + + DL + +T+ L KF G + +++ + + +A++
Sbjct: 4 SAPSYPMASLYVGDLHQ-----DVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVN 58
Query: 65 YHREDQAQAALDYFN 79
+ + A+ ALD N
Sbjct: 59 FQQPADAERALDTMN 73
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGRPVRIMWS 87
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 149 (57.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 49/205 (23%), Positives = 93/205 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL+ + E ++ F + G + SV V R G S G+GFV F E
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDS----GH--SRGFGFVNFQKHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + + + + R+ + +E ++ +R K + + G + V+N+
Sbjct: 245 QKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDS 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F +G + K M G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPYG---VITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM--NGRILG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRY 780
+ L + A+ + + I TN+Y
Sbjct: 360 TKPLYVALAQRKEERKAIL--TNQY 382
Score = 139 (54.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 50/195 (25%), Positives = 90/195 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL + ++ F G I S V D S G+GFV F T E+ Q
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHG-----SRGFGFVHFETHEAAQQ 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L++ ++ + E E R A + + I V+N+ + +
Sbjct: 154 AITTMNGMLLNDRKVFVGHFKSRREREVELGAR-----AMEF-TNIYVKNLHVDVDEQGL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG++ V++ + SG RGFGFV F EA++A+ + + GR L +
Sbjct: 208 QDLFSRFGKMLSVKVMRD--DSGHSRGFGFVNFQKHEEAQKAVMDM-NGKEVSGRLLYVG 264
Query: 763 WAEE-ADNVEDIRKR 776
A++ + ++++R
Sbjct: 265 RAQKRVERQSELKRR 279
Score = 122 (48.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 54/206 (26%), Positives = 89/206 (43%)
Query: 319 HWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+ E V+ E I+V+NL V E L LF ++G + V + D ++ +
Sbjct: 172 HFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
+GF V F E A +A ++G GR+L++ G+ ++ V+ + +R+ +
Sbjct: 231 RGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV--GRAQKR---VERQSEL---KRRFEQ 282
Query: 438 FNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQ 492
Q R + + L VKNL L+ F P+G + V G G V F
Sbjct: 283 LKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSS 342
Query: 493 KNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 343 PEEATKAVTEMNGRILGTKPLYVALA 368
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V G+ + ++ PG K GN+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNI 101
Score = 65 (27.9 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L F +G + + D ++GF V F E A QA
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAIT 156
Query: 397 HLDGTVFLGR 406
++G + R
Sbjct: 157 TMNGMLLNDR 166
Score = 60 (26.2 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N KG+ + I +D + SG +
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGN 100
Score = 56 (24.8 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIG 64
SGP P + + DL +T+ L KF G + +++ + + +A+I
Sbjct: 4 SGPGFPLASLYVGDLHP-----DVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYIN 58
Query: 65 YHREDQAQAALDYFNNTYVFSSRIKV 90
+ + A+ ALD N + I++
Sbjct: 59 FQQPADAERALDTMNFEVIKGQPIRI 84
Score = 41 (19.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
I +KNL D KAL++ F G +L
Sbjct: 101 IFIKNLEDSI---DNKALYDTFSTFGNIL 126
Score = 41 (19.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ G R F F+ + + AQ A+ N + ++
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQQAITTMNGMLLNDRKV 168
Query: 89 KV 90
V
Sbjct: 169 FV 170
Score = 39 (18.8 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWS 87
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 146 (56.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 42/169 (24%), Positives = 82/169 (48%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++KN + ++ ++ F GP SV V R KS G +GFV++ T E+
Sbjct: 199 TNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKG------FGFVRYETHEAA 252
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L S++ + + R+ + +E A +R + ++ G I ++N+
Sbjct: 253 QKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ MV G +GFG V F + +A +A+
Sbjct: 313 IDDEKLKEEFSSFGSISRAKV---MVEVGQGKGFGVVCFSSFEDATKAV 358
Score = 124 (48.7 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 47/198 (23%), Positives = 94/198 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + G S GY +V F + + N+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN----G---SKGYAYVHFDSLAAANR 160
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ Q+ + R + E A V+ + + T + + V+N ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRF-KFPEERAAEVRTRD----RATFTNVFVKNFGNDMDDEKL 215
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+E+F +G + V++ + SG +GFGFV + T A++A+ L + G+ L +
Sbjct: 216 KEIFSGYGPTESVKVIRD--ASGKSKGFGFVRYETHEAAQKAVLDL-HGKSINGKVLYVG 272
Query: 763 WAEEA-DNVEDIRKRTNR 779
A++ + + ++R+R R
Sbjct: 273 RAQKKIERLAELRRRFER 290
Score = 78 (32.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L K F GPL + D T G+ V F P A A +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 399 DGTVFLGRMLHLIPGKPKE 417
+ + G+ L+ +P +
Sbjct: 80 NFDLINGKPFRLMWSQPDD 98
Score = 76 (31.8 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L LF +G + + D + +KG+A V F A +A
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIW 163
Query: 397 HLDGTVFLGRMLHLIPGK-PKENEGNV 422
H++G R +++ K P+E V
Sbjct: 164 HMNGVRLNNRQVYVGRFKFPEERAAEV 190
Score = 47 (21.6 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG Y+ F+ + ALN N GK + D+ + SG + N + S++
Sbjct: 59 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118
Query: 314 N 314
N
Sbjct: 119 N 119
Score = 40 (19.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 233 PAGVKKKDLKA 243
PAG KKK LKA
Sbjct: 8 PAGKKKKYLKA 18
Score = 37 (18.1 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 481 PYGITGLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
P G G V F A+ A N++ + P L W+
Sbjct: 58 PLGY-GYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94
>SGD|S000005964 [details] [associations]
symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
GermOnline:YPL043W Uniprot:P37838
Length = 685
Score = 124 (48.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 46/171 (26%), Positives = 81/171 (47%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK---PLPLASV-RTT---FLGMAYIGFKDEKNCNKALNK- 277
T+ V+++P V + L +F P+ A V + T G ++ F E + +AL K
Sbjct: 27 TLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKA 86
Query: 278 NKSFWKGKQLNI-YKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAES 336
K+ + G L + +D S K S + + S E I ++ + ++D+ ED
Sbjct: 87 RKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDAD--GEDSMLK 144
Query: 337 GR--IFVRNLSYTVTED-DLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
G+ + +RN+ ++ + L K+F +YG + E +P K K GFA VT
Sbjct: 145 GKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIP-RKRDGKLCGFAFVT 194
Score = 116 (45.9 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 57/211 (27%), Positives = 93/211 (44%)
Query: 188 DISDMEYLKLKTKSKDTAPSDP-SV-PPVSKAPVHKRQYHTIVVKNLPAGVKKKDLK--- 242
D +D E LK K K + P S PV + R Y T+V +P +K+D K
Sbjct: 134 DDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGR-YGTVVEATIP---RKRDGKLCG 189
Query: 243 -AYFKPLPLASVRTTFLGMAYIGFKDEKNC-NKALNKNKSFWKG-KQLNIYKYSKDNSAK 299
A+ +++ R + K + A+ KN+ W+ K+ KD++
Sbjct: 190 FAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQKNR--WEDYKKAQPEMNDKDDNES 247
Query: 300 YSGAADDNNNASM-ENIKAKHWKSQ----EDSVQFAEDIAESGRIFVRNLSYTVTEDDLT 354
+ A++N++ EN + Q ++S + A++ E +FVRN+ Y TE+ L
Sbjct: 248 GNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKAQNKREDFSVFVRNVPYDATEESLA 307
Query: 355 KLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
F K+G + + IDK T KG A V F
Sbjct: 308 PHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338
Score = 111 (44.1 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 36/163 (22%), Positives = 71/163 (43%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK-TKGFALVTFLMPE 389
+D + +FVR++ VT++ L F + P+ + + K+T+K ++GF V+F + +
Sbjct: 20 DDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAV--VVKDTNKRSRGFGFVSFAVED 77
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISE--RKLDAFNQVVE---- 443
+A T F G +L + K ++ V E K+ N E
Sbjct: 78 DTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDAD 137
Query: 444 -----ARSKRIILVKNLPYRTL-PTDLKALFEPFGDLGRVLVP 480
+ K ++++N+P+ P LK +F +G + +P
Sbjct: 138 GEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIP 180
Score = 109 (43.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 39/135 (28%), Positives = 66/135 (48%)
Query: 638 ESLNQALKVLQNSSLDEHQIE---LKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694
ES N+ + + DE++ E + ++++N ES KRK+ N K+ + VRN+P
Sbjct: 246 ESGNEDAEENHDDEEDENEEEDRQVDQASKNKES-----KRKAQN--KREDFSVFVRNVP 298
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF---ITKNEAKRAMKALCQS 751
+ A + + F FG +K+ LP +GL +G FV F T NE + A +
Sbjct: 299 YDATEESLAPHFSKFGSVKYA-LPVIDKSTGLAKGTAFVAFKDQYTYNECIKNAPAAGST 357
Query: 752 THLYGRRLVLEWAEE 766
+ L G ++ E+ E
Sbjct: 358 SLLIGDDVMPEYVYE 372
Score = 101 (40.6 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 40/148 (27%), Positives = 65/148 (43%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++D + D+N + +A K++E S + A++ E +FVRN+ Y TE+
Sbjct: 249 NEDAEENHDDEEDENEEEDRQVDQAS--KNKE-SKRKAQNKREDFSVFVRNVPYDATEES 305
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTF---------LMPEHATQAYQHLDGT-- 401
L F K+G + + IDK T KG A V F + A + L G
Sbjct: 306 LAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNAPAAGSTSLLIGDDV 365
Query: 402 ----VFLGRMLHLIPGKPKENEGNVDGK 425
V+ GR+L + P +E+ G + K
Sbjct: 366 MPEYVYEGRVLSITPTLVREDAGRMAEK 393
Score = 95 (38.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D +++++N+ +++TE+S+ HF K G SV A KS G L+ G FV F + +
Sbjct: 289 DFSVFVRNVPYDATEESLAPHFSKFG---SVKYALPVIDKSTG--LAKGTAFVAFKDQYT 343
Query: 640 LNQALK---VLQNSSL---DEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK 687
N+ +K ++SL D+ E R L T V+ + +A++ +K
Sbjct: 344 YNECIKNAPAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVREDAGRMAEKNAAK 397
Score = 75 (31.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 37/136 (27%), Positives = 59/136 (43%)
Query: 619 KSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSS 678
K+P LSM ++ R ++ALK L ++ E E+K R+ S+ + R +
Sbjct: 453 KNPSLHLSMTRLAIRNLPRAMNDKALKALARKAVVEFATEVKNKERHPLSKEEII-RSTK 511
Query: 679 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS--GLHRGFGFVEFI 736
K G I Q K+ K G +K ++ ++ GS G RG+GFVEF
Sbjct: 512 EKYKFMGPD----EIEAQKKKD------KKSGVVKQAKVIMEVKGSTAGRSRGYGFVEFR 561
Query: 737 TKNEAKRAMKAL-CQS 751
A ++ L C +
Sbjct: 562 DHKNALMGLRWLNCHA 577
Score = 59 (25.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/120 (25%), Positives = 44/120 (36%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T EQL F + + T + R F F+ + ED + AL T F+ I
Sbjct: 37 VTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTK-FNGHI 95
Query: 89 KVEKCSNLGDTTKPKSW--SKYAPDSSAYQKLHNIAPKQDLKPEHTK-DSKPGKKSKNDP 145
+ D +K S K P+SS N + D E + KP +N P
Sbjct: 96 LRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMP 155
Score = 57 (25.1 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 22/112 (19%), Positives = 46/112 (41%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK F GTV + + +GK FAF+ + + AL+ + + ++ V+
Sbjct: 163 KLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDF 222
Query: 93 CSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKND 144
+ + + K P+ + K N + +D + H D + + + D
Sbjct: 223 AVQ---KNRWEDYKKAQPEMN--DKDDNESGNEDAEENH--DDEEDENEEED 267
Score = 52 (23.4 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 602 KKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQI 657
KK G + V + + G+ S GYGFV+F ++ L+ L ++ +I
Sbjct: 530 KKSGVVKQAKVIMEVKGSTAGR--SRGYGFVEFRDHKNALMGLRWLNCHAVTSDEI 583
Score = 47 (21.6 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 21/67 (31%), Positives = 28/67 (41%)
Query: 443 EARSKR---IILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAA 499
+A++KR + V+N+PY L F FG + L TGL K A A
Sbjct: 282 KAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLA----KGTAFVA 337
Query: 500 FNSLAYT 506
F YT
Sbjct: 338 FKD-QYT 343
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 29/109 (26%), Positives = 46/109 (42%)
Query: 667 ESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 726
E EA K K S V KQ +K+++ A +S F F + K + + +
Sbjct: 521 EIEAQKKKDKKSGVVKQ--AKVIMEVKGSTAGRSRGYG-FVEFRDHKNALMGLRWLNCHA 577
Query: 727 HRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRK 775
+E + +E K+ L + GRRL +E+A E NV R+
Sbjct: 578 VTSDEILEGLNDDEKKQVDNDLGK-----GRRLCVEFAIENSNVVKRRR 621
>DICTYBASE|DDB_G0270156 [details] [associations]
symbol:DDB_G0270156 "RNA-binding protein 28"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0270156
EMBL:AAFI02000005 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT RefSeq:XP_646584.1
ProteinModelPortal:Q55C97 EnsemblProtists:DDB0190846 GeneID:8617554
KEGG:ddi:DDB_G0270156 InParanoid:Q55C97 ProtClustDB:CLSZ2846931
Uniprot:Q55C97
Length = 900
Score = 142 (55.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 43/199 (21%), Positives = 99/199 (49%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHF---KKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ-FY 635
DTT + E+ I + + K+ IA+ VA K + FLS+ ++ Y
Sbjct: 106 DTTTATTTTTTTTPEEPIVKQYNTKKEFSVIANNLVAEKVFVSN---FLSLKKDTIKAVY 162
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPF 695
+ N A++++ + + Q+ K + +N ++ +V N +++++RN+ F
Sbjct: 163 SIPHSNDAIRIVCENQENLKQVVTKLT-KNKQNNGKSVLYAVEN-DNLKANELIIRNLSF 220
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLY 755
+ E F ++G+L V++P K G+ RGF F+ F + +++ +K C + ++
Sbjct: 221 NTNIQFLVEKFSSYGQLILVKVPTKP-GTNTPRGFAFLTFKERESSEKVLKE-CNNEKIH 278
Query: 756 GRRLVLEWAEEADNVEDIR 774
R++V++W+ + ++ + ++
Sbjct: 279 TRQIVIDWSLKQNDYQQLQ 297
Score = 98 (39.6 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
+ +RN+ F K+ ++ F+ +G+L F RL + + G FV++ +++A+RA++A
Sbjct: 405 LFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKL-TQKPTGKAFVKYHEQDDARRAVEA 463
Query: 748 LCQSTHLYGRRLVLEWAEEADNVEDIRKRTNR 779
C ST LY L LE + N +D +K + +
Sbjct: 464 -CSSTPLYD--LSLE-DKINKNQKDSKKESKK 491
Score = 96 (38.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 308 NNASMENIKAKHWKSQED---SVQFA--EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGP 362
N +++ + K K++++ SV +A D ++ + +RNLS+ L + F YG
Sbjct: 177 NQENLKQVVTKLTKNKQNNGKSVLYAVENDNLKANELIIRNLSFNTNIQFLVEKFSSYGQ 236
Query: 363 LAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENE 419
L V +P T+ +GFA +TF E + + + + R + +I K+N+
Sbjct: 237 LILVKVPTKPGTNTPRGFAFLTFKERESSEKVLKECNNEKIHTRQI-VIDWSLKQND 292
Score = 93 (37.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK----GFALVTFLMPEHATQ 393
++FV+ L+ T +DL F GPL + + K+ +K + G A V + + EHA +
Sbjct: 5 QVFVKGLTPDTTNEDLENFFSDIGPLKRCFI-VTKQNEKGEKVCSGIAYVWYALAEHAEK 63
Query: 394 AYQHLDGTVFLGRMLHLIPGKPK-ENEGNVDGK 425
A + + +++H+ K K + + D K
Sbjct: 64 AIKEKNNKQLKSKIIHVSIAKEKLSKKDSKDSK 96
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 23/100 (23%), Positives = 51/100 (51%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL+I+NL F++ E+ + F++ G + + K + P G FV+++ ++
Sbjct: 404 TLFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKP-----TGKAFVKYHEQDDAR 458
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVA 681
+A++ ++ L + +E K N+N + K+ S +V+
Sbjct: 459 RAVEACSSTPLYDLSLEDK-INKNQKDSKKESKKNSLSVS 497
Score = 78 (32.5 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 22/102 (21%), Positives = 45/102 (44%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++K L ++T + + F GP+ + K++ K G+ + G +V + E +
Sbjct: 6 VFVKGLTPDTTNEDLENFFSDIGPLKRCFIVTKQNEK--GEKVCSGIAYVWYALAEHAEK 63
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT 684
A+K N L I + + L S+ + K S +K +
Sbjct: 64 AIKEKNNKQLKSKIIHVSIAKEKL-SKKDSKDSKDSKDSKDS 104
Score = 46 (21.3 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 118 LHNIAPKQDLKPEHTKDSKPGKKSKN 143
+H K+ L + +KDSK K SK+
Sbjct: 78 IHVSIAKEKLSKKDSKDSKDSKDSKD 103
Score = 41 (19.5 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQKNQAKAAFNS 502
++++NL + T L F +G L V VP P G L F ++ ++
Sbjct: 213 LIIRNLSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLT-FKERESSEKVLKE 271
Query: 503 LAYTKFKEVPLYLEWA 518
K + ++W+
Sbjct: 272 CNNEKIHTRQIVIDWS 287
Score = 39 (18.8 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLV 479
+ VK L T DL+ F G L R +
Sbjct: 6 VFVKGLTPDTTNEDLENFFSDIGPLKRCFI 35
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 128 (50.1 bits), Expect = 0.00018, P = 0.00018
Identities = 42/182 (23%), Positives = 90/182 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+L++ NLN N D ++ K + + +D + G + +G+V F + E L
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEI---QDVRLGG---TKKFGYVDFASEEELQ 344
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+AL+ L L ++L ++ R+ E+ K + + + V+N+P+ Q +
Sbjct: 345 KALE-LNGKKLLGQPVKLDKA-RSKENSQENKKERDART-------LFVKNLPYSITQDD 395
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ E+F + +R+P M +G RG ++EF T+ A++A++ Q + + GR +++
Sbjct: 396 LREIFDQAVD---IRVP--MGNTGTSRGIAYIEFKTEAIAEKALEE-AQGSDVQGRSIIV 449
Query: 762 EW 763
++
Sbjct: 450 DF 451
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 45/183 (24%), Positives = 87/183 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L + NL F+++EDS++ F+K S+ + P++ G+ GY FV+F E +
Sbjct: 470 LVVNNLAFSASEDSLQSVFEKA---VSIRI-----PQNNGR--PKGYAFVEFENVEDSKE 519
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
AL+ N+ ++ I L+ S + E R +S K + V+ + +
Sbjct: 520 ALENCNNTDIEGRSIRLEYSQNDRERGGGG--RGNSGPTKT----LFVKGLSDDTTDQTL 573
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++ F G + R+ +G +GFGFV+F + + K A +A+ + G ++ L+
Sbjct: 574 KDSFD--GAIA-ARIATDR-DTGSSKGFGFVDFDNEQDCKAAKEAM-DDGEIDGNKVTLD 628
Query: 763 WAE 765
+A+
Sbjct: 629 YAK 631
Score = 102 (41.0 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKP-----LPLASVRTTFLGMAYIGFKDEKNCNKAL 275
+R T+ VKNLP + + DL+ F +P+ + T+ G+AYI FK E KAL
Sbjct: 376 ERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTS-RGIAYIEFKTEAIAEKAL 434
Query: 276 NKNK-SFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIA 334
+ + S +G+ + I ++ D S + A + + N A + + EDS+Q + A
Sbjct: 435 EEAQGSDVQGRSI-IVDFTGDKSRQGGRGAPSASKVLVVNNLA--FSASEDSLQSVFEKA 491
Query: 335 ESGRI 339
S RI
Sbjct: 492 VSIRI 496
Score = 99 (39.9 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 24/94 (25%), Positives = 53/94 (56%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
+K +S+E+S + ++ ++ +FV+NL Y++T+DDL ++F++ ++ +P+ T
Sbjct: 359 VKLDKARSKENSQENKKE-RDARTLFVKNLPYSITQDDLREIFDQ---AVDIRVPMGN-T 413
Query: 375 DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRML 408
++G A + F A +A + G+ GR +
Sbjct: 414 GTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSI 447
Score = 87 (35.7 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ V NL+++ +ED L +FEK V + I + + KG+A V F E + +A ++
Sbjct: 470 LVVNNLAFSASEDSLQSVFEK-----AVSIRIPQNNGRPKGYAFVEFENVEDSKEALENC 524
Query: 399 DGTVFLGRMLHL 410
+ T GR + L
Sbjct: 525 NNTDIEGRSIRL 536
Score = 79 (32.9 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++T+ +++ F G IA+ +A +D S S G+GFV F +
Sbjct: 558 TLFVKGLSDDTTDQTLKDSFD--GAIAA-RIATDRDTGS-----SKGFGFVDFDNEQDCK 609
Query: 642 QALKVLQNSSLDEHQIEL 659
A + + + +D +++ L
Sbjct: 610 AAKEAMDDGEIDGNKVTL 627
Score = 70 (29.7 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
Y ITQ+ L+ F++ D+++ G R A+I + E A+ AL+ + V
Sbjct: 389 YSITQDDLREIFDQ---AVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGR 445
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIA 122
I V+ GD K + + AP +S ++N+A
Sbjct: 446 SIIVDFT---GD--KSRQGGRGAPSASKVLVVNNLA 476
Score = 68 (29.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG 486
R R + VKNLPY DL+ +F+ D+ RV P G TG
Sbjct: 377 RDARTLFVKNLPYSITQDDLREIFDQAVDI-RV---PMGNTG 414
Score = 67 (28.6 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 34/144 (23%), Positives = 58/144 (40%)
Query: 283 KGKQLNIYKYSKDNSAKYSGAADDNNNASMEN----IKAKHWKSQEDSVQFAEDIAESGR 338
K K+ + K +++ + +D++ E K K +E A+ G
Sbjct: 229 KAKKAGMVKAKEESEEEDDDDEEDDDEEEEETPATPAKRKAETKKEKGTPPAKKAKTDGE 288
Query: 339 ---IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPI-DKETDKTKGFALVTFLMPEHATQA 394
+F+ NL+ D+L K+ ++ L I D TK F V F E +A
Sbjct: 289 GFSLFLGNLNNNKDFDELKSAISKF--FSKEGLEIQDVRLGGTKKFGYVDFASEEELQKA 346
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
+ L+G LG+ + L + KEN
Sbjct: 347 LE-LNGKKLLGQPVKLDKARSKEN 369
Score = 55 (24.4 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 27/107 (25%), Positives = 43/107 (40%)
Query: 200 KSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKA----YFKPLPLASVRT 255
K K + PP KA + ++ + NL +LK+ +F L ++
Sbjct: 266 KRKAETKKEKGTPPAKKAKTDGEGF-SLFLGNLNNNKDFDELKSAISKFFSKEGL-EIQD 323
Query: 256 TFLG----MAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKY-SKDNS 297
LG Y+ F E+ KAL N G+ + + K SK+NS
Sbjct: 324 VRLGGTKKFGYVDFASEEELQKALELNGKKLLGQPVKLDKARSKENS 370
Score = 53 (23.7 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 38 FEEKGT-VTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNL 96
F ++G + DV+L G ++F ++ + E++ Q AL+ N + +K++K +
Sbjct: 314 FSKEGLEIQDVRL-----GGTKKFGYVDFASEEELQKALE-LNGKKLLGQPVKLDKARSK 367
Query: 97 GDTTKPK 103
++ + K
Sbjct: 368 ENSQENK 374
Score = 40 (19.1 bits), Expect = 7.2e-06, Sum P(4) = 7.2e-06
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP---PYGITGLVEFLQKNQAKAAFNS 502
+ ++++V NL + L+++FE + R+ P G VEF +K A +
Sbjct: 466 ASKVLVVNNLAFSASEDSLQSVFEKAVSI-RIPQNNGRPKGYA-FVEFENVEDSKEALEN 523
Query: 503 LAYTKFKEVPLYLEWA 518
T + + LE++
Sbjct: 524 CNNTDIEGRSIRLEYS 539
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 164 (62.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 199
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 200 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 258
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 259 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 305
Score = 133 (51.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 47/184 (25%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 108
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 109 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 162
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 163 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 219
Query: 763 WAEE 766
A++
Sbjct: 220 RAQK 223
Score = 65 (27.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AY+ F+ + +AL+ N KGK + I +D S + SG + N + S++
Sbjct: 7 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 66
Query: 314 N 314
N
Sbjct: 67 N 67
Score = 51 (23.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 374 TDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLI-----PGKPKENEGNVDGK-VH 427
T ++ G+A V F P A +A ++ V G+ + ++ P K GN+ K +
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 428 CCISERKL-DAFNQVVEARSKRIILVKN 454
I + L D F+ S +++ +N
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDEN 90
Score = 39 (18.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 12 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 42
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 60 FAFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
+A++ + + A+ ALD N + +++
Sbjct: 9 YAYVNFQQPADAERALDTMNFDVIKGKPVRI 39
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 150 (57.9 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 51/205 (24%), Positives = 91/205 (44%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL + E ++ F + G SV V R S GQ S G+GF+ F E
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD----SNGQ--SRGFGFINFEKHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + + + + R+ + E + +R K + G + V+N+
Sbjct: 245 QKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDS 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++E+F +G + K M S +GFGFV F + EA +A+ + + + G
Sbjct: 305 INDDRLKEVFSTYG---VITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRY 780
+ L + A+ + + I TN+Y
Sbjct: 360 TKPLYVALAQRKEERKAIL--TNQY 382
Score = 140 (54.3 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 48/196 (24%), Positives = 97/196 (49%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL + ++ F G I S V + G S G+GFV F T E+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEH----G---SRGFGFVHFETHEAAQK 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG-SKILVRNIPFQAKQSE 701
A+ + L++ ++ + + +S KR++ A+ G + I V+N+ +
Sbjct: 154 AINTMNGMLLNDRKVFVG----HFKSRQ---KREAELGARALGFTNIYVKNLRVDMDEQG 206
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+++LF FG+ + V++ + +G RGFGF+ F EA++A+ + + G+ L +
Sbjct: 207 LQDLFSQFGKTQSVKVMRD--SNGQSRGFGFINFEKHEEAQKAVDHM-NGKEVSGQLLYV 263
Query: 762 EWAEE-ADNVEDIRKR 776
A++ A+ ++++R
Sbjct: 264 GRAQKRAERQNELKRR 279
Score = 110 (43.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/103 (25%), Positives = 53/103 (51%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V+NL ++ +D L ++F YG + + E+ +KGF V F PE AT+A +
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSA--KVMTESSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 399 DGTVFLGRMLHL-IPGKPKENEGNVDGKVHCCISERKLDAFNQ 440
+G + + L++ + + +E + + + +S L +F Q
Sbjct: 354 NGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQ 396
Score = 80 (33.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L ++F G + + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRII 450
+ + G+ + ++ PG + GN+ K + I + L D F+ S +++
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Score = 76 (31.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 31 QEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
++ L+ F + G V++ + G+ R F FI + + ++AQ A+D+ N V
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEV 256
Score = 60 (26.2 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L F +G + + ++ ++GF V F E A +A
Sbjct: 99 GNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAIN 156
Query: 397 HLDGTVFLGR 406
++G + R
Sbjct: 157 TMNGMLLNDR 166
Score = 56 (24.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSG 302
LG AYI F+ + +AL+ N KG+ + I +D + SG
Sbjct: 52 LGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSG 97
Score = 55 (24.4 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 19/90 (21%), Positives = 40/90 (44%)
Query: 1 MFNHLSGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRF 60
M++H P + R+ + + + +E I + L F G++ ++ Y G R F
Sbjct: 85 MWSHRD-PGLRRSGMGNIFIKNLE--NSIDNKALYDTFSTFGSILSSKVVYNEHGS-RGF 140
Query: 61 AFIGYHREDQAQAALDYFNNTYVFSSRIKV 90
F+ + + AQ A++ N + ++ V
Sbjct: 141 GFVHFETHEAAQKAINTMNGMLLNDRKVFV 170
Score = 52 (23.4 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L F GT+ +++ + + +A+I + + A+ ALD N +
Sbjct: 22 VTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 42 (19.8 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLG-----RVLVPPYGITGL--VEFLQKNQAKAAFNS 502
I +KNL D KAL++ F G +V+ +G G V F A+ A N+
Sbjct: 101 IFIKNLENSI---DNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINT 157
Query: 503 L 503
+
Sbjct: 158 M 158
Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEMIKGQPIRIMWS 87
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 145 (56.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 52/205 (25%), Positives = 92/205 (44%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL+ + E ++ F + G I SV V R G S G+GFV F E
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDS----GH--SRGFGFVNFEKHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + + + + R+ + +E + +R K + + G + V+N+
Sbjct: 245 QKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLD-- 302
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
+ E+L K F + K M G +GFGFV F + EA +A+ + + + G
Sbjct: 303 -DSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRY 780
+ L + A+ + + I TN+Y
Sbjct: 360 TKPLYVALAQRKEERKAIL--TNQY 382
Score = 133 (51.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 49/195 (25%), Positives = 91/195 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL + ++ F G I S V D S G+GFV F T E+
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHG-----SRGFGFVHFETHEAAQN 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + E EA R A + + I V+N+ + +
Sbjct: 154 AIRTMNGMLLNDRKVFVGHFKSRREREAELGAR-----ALEF-TNIYVKNLHVDVDERCL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG++ V++ + SG RGFGFV F +A++A+ + + GR L +
Sbjct: 208 QDLFSQFGKILSVKVMRD--DSGHSRGFGFVNFEKHEDAQKAVTDM-NGKEVSGRLLYVG 264
Query: 763 WAEE-ADNVEDIRKR 776
A++ + ++++R
Sbjct: 265 RAQKRVERQNELKRR 279
Score = 87 (35.7 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V G+ + ++ PG K GNV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNV 101
Score = 60 (26.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N KG+ + I +D + SG +
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGN 100
Score = 56 (24.8 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIG 64
SGP P + + DL +T+ L KF G + +++ + + +A+I
Sbjct: 4 SGPGYPLASLYVGDLHP-----DVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYIN 58
Query: 65 YHREDQAQAALDYFNNTYVFSSRIKV 90
+ + A+ ALD N + I++
Sbjct: 59 FQQPADAERALDTMNFEVIKGQPIRI 84
Score = 40 (19.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
+ +KNL D KAL++ F G +L
Sbjct: 101 VFIKNLEDSI---DNKALYDTFSTFGNIL 126
Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWS 87
Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ G R F F+ + + AQ A+ N + ++
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Query: 89 KV 90
V
Sbjct: 169 FV 170
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 122 (48.0 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 522 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 571
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 572 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 627
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 628 EAM-EDGEIDGNKVTLDWAK 646
Score = 120 (47.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 33/138 (23%), Positives = 66/138 (47%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + + Q + +D I L + +++ R N
Sbjct: 428 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDY---RGGKNSTWSGE 484
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + F+++P+ +G +G+ F+EF + +AK A
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 539
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 540 LNS-CNKREIEGRAIRLE 556
Score = 99 (39.9 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE AE+ L + K+ K+KG A + F A + ++
Sbjct: 395 LLAKNLPYKVTQDELKEVFED---AAEIRL-VSKD-GKSKGIAYIEFKTEADAEKTFEEK 449
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +N+ GK
Sbjct: 450 QGTEIDGRSISLYYTGEKGQNQDYRGGK 477
Score = 94 (38.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 628 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 656
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK A I + K+KG+A + F E A +A
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 539
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 540 LNSCNKREIEGRAIRL 555
Score = 89 (36.4 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 31/124 (25%), Positives = 57/124 (45%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K +R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 381 PKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEA 440
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYS--KDNSAKYSGAADDNNNASMENIKAKH--WKSQE 324
+ K K + G+ +++Y Y+ K + Y G + + + + + + + E
Sbjct: 441 DAEKTFEEKQGTEIDGRSISLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 499
Query: 325 DSVQ 328
+++Q
Sbjct: 500 ETLQ 503
Score = 82 (33.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G + AR + G S G+GFV F + E
Sbjct: 573 TLFVKGLSEDTTEETLKESFD--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 624
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 625 AAKEAMEDGEIDGNKVTL 642
Score = 81 (33.6 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKG------YAFIEFASFEDAK 537
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 538 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 587
Score = 72 (30.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL--VEFLQKNQAKAAFNS 502
R R +L KNLPY+ +LK +FE ++ R++ G+ +EF + A+ F
Sbjct: 390 RDARTLLAKNLPYKVTQDELKEVFEDAAEI-RLVSKDGKSKGIAYIEFKTEADAEKTFEE 448
Query: 503 LAYTKF--KEVPLY 514
T+ + + LY
Sbjct: 449 KQGTEIDGRSISLY 462
Score = 67 (28.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ + T +
Sbjct: 402 YKVTQDELKEVFED---AAEIRL-VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Score = 55 (24.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 322 ELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 380
Score = 37 (18.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 305 DDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
DD+ +ME AK K+ + A+++AE
Sbjct: 204 DDSEEEAMETTPAKGKKAAKVVPVKAKNVAE 234
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 122 (48.0 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 523 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 572
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 573 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 628
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 629 EAM-EDGEIDGNKVTLDWAK 647
Score = 120 (47.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 33/138 (23%), Positives = 66/138 (47%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + + Q + +D I L + +++ R N
Sbjct: 429 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDY---RGGKNSTWSGE 485
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + F+++P+ +G +G+ F+EF + +AK A
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 540
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 541 LNS-CNKREIEGRAIRLE 557
Score = 99 (39.9 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE AE+ L + K+ K+KG A + F A + ++
Sbjct: 396 LLAKNLPYKVTQDELKEVFED---AAEIRL-VSKD-GKSKGIAYIEFKTEADAEKTFEEK 450
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +N+ GK
Sbjct: 451 QGTEIDGRSISLYYTGEKGQNQDYRGGK 478
Score = 94 (38.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 572 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 628
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 629 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 657
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK A I + K+KG+A + F E A +A
Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 540
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 541 LNSCNKREIEGRAIRL 556
Score = 89 (36.4 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 31/124 (25%), Positives = 57/124 (45%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K +R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 382 PKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEA 441
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYS--KDNSAKYSGAADDNNNASMENIKAKH--WKSQE 324
+ K K + G+ +++Y Y+ K + Y G + + + + + + + E
Sbjct: 442 DAEKTFEEKQGTEIDGRSISLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 500
Query: 325 DSVQ 328
+++Q
Sbjct: 501 ETLQ 504
Score = 82 (33.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G + AR + G S G+GFV F + E
Sbjct: 574 TLFVKGLSEDTTEETLKESFD--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 625
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 626 AAKEAMEDGEIDGNKVTL 643
Score = 81 (33.6 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 488 TLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKG------YAFIEFASFEDAK 538
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 539 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 588
Score = 72 (30.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL--VEFLQKNQAKAAFNS 502
R R +L KNLPY+ +LK +FE ++ R++ G+ +EF + A+ F
Sbjct: 391 RDARTLLAKNLPYKVTQDELKEVFEDAAEI-RLVSKDGKSKGIAYIEFKTEADAEKTFEE 449
Query: 503 LAYTKF--KEVPLY 514
T+ + + LY
Sbjct: 450 KQGTEIDGRSISLY 463
Score = 67 (28.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ + T +
Sbjct: 403 YKVTQDELKEVFED---AAEIRL-VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 455
Score = 55 (24.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 323 ELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 381
Score = 37 (18.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 305 DDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
DD+ +ME AK K+ + A+++AE
Sbjct: 205 DDSEEEAMETTPAKGKKAAKVVPVKAKNVAE 235
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 122 (48.0 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 524 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 573
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 574 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 629
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 630 EAM-EDGEIDGNKVTLDWAK 648
Score = 120 (47.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 33/138 (23%), Positives = 66/138 (47%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + + Q + +D I L + +++ R N
Sbjct: 430 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDY---RGGKNSTWSGE 486
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + F+++P+ +G +G+ F+EF + +AK A
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 541
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 542 LNS-CNKREIEGRAIRLE 558
Score = 99 (39.9 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE AE+ L + K+ K+KG A + F A + ++
Sbjct: 397 LLAKNLPYKVTQDELKEVFED---AAEIRL-VSKD-GKSKGIAYIEFKTEADAEKTFEEK 451
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +N+ GK
Sbjct: 452 QGTEIDGRSISLYYTGEKGQNQDYRGGK 479
Score = 94 (38.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 573 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 629
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 630 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 658
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK A I + K+KG+A + F E A +A
Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 541
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 542 LNSCNKREIEGRAIRL 557
Score = 89 (36.4 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 31/124 (25%), Positives = 57/124 (45%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K +R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 383 PKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEA 442
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYS--KDNSAKYSGAADDNNNASMENIKAKH--WKSQE 324
+ K K + G+ +++Y Y+ K + Y G + + + + + + + E
Sbjct: 443 DAEKTFEEKQGTEIDGRSISLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 501
Query: 325 DSVQ 328
+++Q
Sbjct: 502 ETLQ 505
Score = 82 (33.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G + AR + G S G+GFV F + E
Sbjct: 575 TLFVKGLSEDTTEETLKESFD--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 626
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 627 AAKEAMEDGEIDGNKVTL 644
Score = 81 (33.6 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 489 TLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKG------YAFIEFASFEDAK 539
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 540 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 589
Score = 72 (30.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL--VEFLQKNQAKAAFNS 502
R R +L KNLPY+ +LK +FE ++ R++ G+ +EF + A+ F
Sbjct: 392 RDARTLLAKNLPYKVTQDELKEVFEDAAEI-RLVSKDGKSKGIAYIEFKTEADAEKTFEE 450
Query: 503 LAYTKF--KEVPLY 514
T+ + + LY
Sbjct: 451 KQGTEIDGRSISLY 464
Score = 67 (28.6 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ + T +
Sbjct: 404 YKVTQDELKEVFED---AAEIRL-VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 456
Score = 55 (24.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 324 ELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 382
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 294 KDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+D+ + DD+ +ME AK K+ + A+++AE
Sbjct: 193 EDDEDEDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAE 234
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 146 (56.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 52/195 (26%), Positives = 92/195 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL + ++ F G I S VA + G S G+GFV F T E+ Q
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH----G---SRGFGFVHFETHEAAQQ 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L++ ++ + E EA R A + + I V+N+P + +
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGAR-----ALEF-TNIYVKNLPVDVDEQGL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG++ V++ + SG R FGFV F EA++A+ + + GR L
Sbjct: 208 QDLFSQFGKMLSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHM-NGKEVSGRLLYAG 264
Query: 763 WAEE-ADNVEDIRKR 776
A++ + ++++R
Sbjct: 265 RAQKRVERQNELKRR 279
Score = 129 (50.5 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 48/205 (23%), Positives = 89/205 (43%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL + E ++ F + G + SV V R G S +GFV F E
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS----GH--SRCFGFVNFEKHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + + + R+ + +E + +R K + + G + V+N+
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F +G + K M G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDDKLRKEFSPYG---VITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRY 780
+ L + A+ + + I TN+Y
Sbjct: 360 TKPLYVALAQRKEERKAIL--TNQY 382
Score = 122 (48.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 47/198 (23%), Positives = 88/198 (44%)
Query: 223 QYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTTFLGMAYIGFKDEKNCNKALNKNKSF 281
++ I VKNLP V ++ L+ F + SV+ + C +N K
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGH------SRCFGFVNFEKHE 242
Query: 282 WKGKQLNIYKYSKDNSAK--YSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRI 339
K + ++ K+ S + Y+G A E +K + + ++D ++ + + +
Sbjct: 243 EAQKAV-VHMNGKEVSGRLLYAGRAQKRVERQNE-LKRRFEQMKQDRLRRYQGV----NL 296
Query: 340 FVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLD 399
+V+NL ++ +D L K F YG + + E +KGF V F PE AT+A ++
Sbjct: 297 YVKNLDDSIDDDKLRKEFSPYGVITSA--KVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 400 GTVFLGRMLHLIPGKPKE 417
G + + L++ + KE
Sbjct: 355 GRIVGTKPLYVALAQRKE 372
Score = 108 (43.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 55/209 (26%), Positives = 88/209 (42%)
Query: 319 HWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+ E + E I+V+NL V E L LF ++G + V + D + +
Sbjct: 172 HFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
+ F V F E A +A H++G GR+L+ G+ ++ V+ + +E K
Sbjct: 231 RCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA--GRAQKR---VERQ-----NELKR-R 279
Query: 438 FNQVVEARSKRI----ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVE 489
F Q+ + R +R + VKNL L+ F P+G + V G G V
Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVC 339
Query: 490 FLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
F +A A + PLY+ A
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 83 (34.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ + G+ + ++ PG K GN+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNI 101
Score = 69 (29.3 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IF++NL ++ L F +G + + D+ ++GF V F E A QA
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAIN 156
Query: 397 HLDGTVFLGR 406
++G + R
Sbjct: 157 TMNGMLLNDR 166
Score = 62 (26.9 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N KG+ + I +D + SG +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGN 100
Score = 52 (23.4 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
+T+ L KF G + +++ + + +A+I + + A+ ALD N
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Score = 44 (20.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ G R F F+ + + AQ A++ N + ++
Sbjct: 110 IDNKALYDTFSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Query: 89 KV 90
V
Sbjct: 169 FV 170
Score = 42 (19.8 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL-----VPPYGITGL--VEFLQKNQAKAAFNS 502
I +KNL D KAL++ F G +L +G G V F A+ A N+
Sbjct: 101 IFIKNLEDSI---DNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINT 157
Query: 503 L 503
+
Sbjct: 158 M 158
Score = 40 (19.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEMLKGQPIRIMWS 87
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 123 (48.4 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 532 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 581
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 582 KTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 637
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 638 EAM-EDGEIDGNKVTLDWAK 656
Score = 121 (47.7 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 34/138 (24%), Positives = 66/138 (47%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + L+ Q + +D I L + +S+ R N
Sbjct: 438 SKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQD---HRGGKNSTWSGE 494
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + +++P+ +G +G+ F+EF + +AK A
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 549
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 550 LNS-CNKREIEGRAIRLE 566
Score = 95 (38.5 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 581 SKTLFVKGLSEDTTEETLKESFD--GSIRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 637
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 638 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 666
Score = 92 (37.4 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK + +P + K+KG+A + F E A +A
Sbjct: 494 ESKTLVLSNLSYSATEETLQEVFEK---ATHIKVP-QNQNGKSKGYAFIEFASFEDAKEA 549
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 550 LNSCNKREIEGRAIRL 565
Score = 89 (36.4 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 391 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 450
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN 314
+ K L K + G+ +++Y Y+ + N+ S E+
Sbjct: 451 DAEKTLEEKQGTEIDGRSISLY-YTGEKGQSQDHRGGKNSTWSGES 495
Score = 89 (36.4 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + +
Sbjct: 405 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTLEEK 459
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +++ + GK
Sbjct: 460 QGTEIDGRSISLYYTGEKGQSQDHRGGK 487
Score = 83 (34.3 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G I AR + G S G+GFV F + E
Sbjct: 583 TLFVKGLSEDTTEETLKESFD--GSIR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 634
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 635 AAKEAMEDGEIDGNKVTL 652
Score = 82 (33.9 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 497 TLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKG------YAFIEFASFEDAK 547
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 548 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 597
Score = 72 (30.4 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ L+ T +
Sbjct: 412 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGR 467
Query: 87 RIKVEKCSNLGDTT-----KPKSWS 106
I + G + K +WS
Sbjct: 468 SISLYYTGEKGQSQDHRGGKNSTWS 492
Score = 64 (27.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFE 469
R R +L KNLPY+ +LK +FE
Sbjct: 400 RDARTLLAKNLPYKVTQDELKEVFE 424
Score = 54 (24.1 bits), Expect = 3.6e-10, Sum P(4) = 3.6e-10
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 332 ELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 390
Score = 51 (23.0 bits), Expect = 4.9e-07, Sum P(4) = 4.9e-07
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 576 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 633
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 634 KAAKEAMEDGEIDGNKVTLDWAKPKG 659
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 88 IKVEKCS-NLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDP 145
+K+ K N GD+ K K + S +++ + E K GKK+ P
Sbjct: 2 VKLAKAGKNQGDSKKMAPPPKEVEEDSEDEEMSEDEDDESSGEEVVIPQKKGKKAATTP 60
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 139 (54.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 55/208 (26%), Positives = 93/208 (44%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + G S GYGFV F T+E+ N+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH----G---SRGYGFVHFETQEAANR 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + E E + V + T + ++N +
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRREREL----EYGAKVMEFTN--VYIKNFGEDMDDKRL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL----CQSTHLY-GR 757
E+F AFG V++ M +G RGFGFV + EA++A+ + +Y GR
Sbjct: 208 REIFSAFGNTLSVKV--MMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ + E E I++ R NRY G
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQG 293
Score = 129 (50.5 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 39/169 (23%), Positives = 73/169 (43%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + + +R F G SV V G+ S G+GFV + E
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD----DTGR--SRGFGFVNYGNHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + ++ I + R+ + +E + ++ K + + G + V+N+
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F +G + ++ M G +GFGFV F + EA +A+
Sbjct: 305 IDDDRLRKEFSPYGTITSAKV---MTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 119 (46.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 46/206 (22%), Positives = 90/206 (43%)
Query: 319 HWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+ E +++ + E ++++N + + L ++F +G V + +D +T ++
Sbjct: 172 HFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLD 436
+GF V + E A +A ++G GRM+++ + + E +G + K I + +++
Sbjct: 231 RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ-IKQERIN 289
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQ 492
+ V + VKNL L+ F P+G + V G G V F
Sbjct: 290 RYQGVN-------LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSS 342
Query: 493 KNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 90 (36.7 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V GR + ++ PG K GNV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101
Score = 69 (29.3 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +F++NL ++ L F +G + + D+ ++G+ V F E A +A Q
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQ 156
Query: 397 HLDGTVFLGRMLHLIPGKPK-ENEGNVDGKV 426
++G + R + + K + E E KV
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRRERELEYGAKV 187
Score = 63 (27.2 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 27/101 (26%), Positives = 45/101 (44%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KG+ + I +D + SG + N + S++N
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDN 112
Score = 52 (23.4 bits), Expect = 6.9e-08, Sum P(3) = 6.9e-08
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A+I + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 0.00048, Sum P(2) = 0.00047
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 431 SERKLDAFN-QVVEARSKRIIL-----------VKNLPYRTLPT--DLKALFEPFGDLGR 476
+ER LD N +V++ R RI+ V N+ + L D KAL++ F G
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGN 124
Query: 477 VL 478
+L
Sbjct: 125 IL 126
Score = 38 (18.4 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWS 87
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 155 (59.6 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRAMNGESLDGRQIRV 79
Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASN 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ + SLD QI + + ++
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKS 85
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 155 (59.6 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRAMNGESLDGRQIRV 79
Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ + SLD QI + + ++
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 155 (59.6 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRAMNGESLDGRQIRV 79
Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ + SLD QI + + ++
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKS 85
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 161 (61.7 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+++ G++F+ LSY TE L + F KYG +A+V + D+ETD+++GF VTF PE A
Sbjct: 19 MSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK 78
Query: 393 QAYQHLDGTVFLGRMLHLIP-GKPKENEGNVDG 424
A ++G GRM+ + GK G G
Sbjct: 79 DAMAAMNGKQVDGRMIRVDEAGKSGGRSGGFRG 111
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 135 (52.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 49/187 (26%), Positives = 88/187 (47%)
Query: 232 LPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEKNCNKALN-KNKSFWKGKQL 287
LP V + +LK F+ + L S G+AYI FK E + K K + G+ +
Sbjct: 1 LPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 60
Query: 288 NIYKYS--KDNSAKYSGAADD--NNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRN 343
++Y Y+ K + Y G + ++++ + + + ++ ++Q + ES + + N
Sbjct: 61 SLY-YTGEKGQNQDYRGGKNSTWSDDSRKTDQSSAYVRTTSRTLQHV--LGESKTLVLSN 117
Query: 344 LSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVF 403
LSY+ TE+ L ++FEK A I + K+KG+A + F E A +A +
Sbjct: 118 LSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 173
Query: 404 LGRMLHL 410
GR + L
Sbjct: 174 EGRAIRL 180
Score = 122 (48.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 147 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 196
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 197 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 252
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 253 EAM-EDGEIDGNKVTLDWAK 271
Score = 94 (38.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 196 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 252
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 253 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 281
Score = 82 (33.9 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G + AR + G S G+GFV F + E
Sbjct: 198 TLFVKGLSEDTTEETLKESFD--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 249
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 250 AAKEAMEDGEIDGNKVTL 267
Score = 72 (30.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/97 (25%), Positives = 43/97 (44%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ + T +
Sbjct: 3 YKVTQDELKEVFED---AAEIRL-VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 58
Query: 87 RIKVEKCSNLGDTT-----KPKSWS---KYAPDSSAY 115
I + G K +WS + SSAY
Sbjct: 59 SISLYYTGEKGQNQDYRGGKNSTWSDDSRKTDQSSAY 95
Score = 50 (22.7 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 191 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA 248
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 249 KAAKEAMEDGEIDGNKVTLDWAKPKG 274
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 135 (52.6 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 51/178 (28%), Positives = 79/178 (44%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKNL + ++ ++ F + GP SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILV----RNIPFQ 696
+A+ + L+ QI + R+ + +E + T +K K + KQ KI R++ Q
Sbjct: 245 RKAVDEMNGKDLNGKQIYVGRAQKKVERQ-TELKHKFGQM-KQDKPKIEQVPQDRSVRCQ 302
Query: 697 AKQSEV---------EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
V E L K F + K + G +GFGFV F + EA +A+
Sbjct: 303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAV 360
Score = 130 (50.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 44/184 (23%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++KNL+ + ++ F G I S V ++ G S GYGFV F T+E +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEEAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R + +A R AK+ + + ++N+ +
Sbjct: 154 AIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR-----AKEF-TNVYIKNLGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 QDLFSRFGPALSVKVMTDE--SGKSKGFGFVSFERHEDARKAVDEM-NGKDLNGKQIYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 121 (47.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 47/206 (22%), Positives = 93/206 (45%)
Query: 222 RQYHTIVVKNLPAGV---KKKDLKAYFKPLPLASVRTT----FLGMAYIGFKDEKNCNKA 274
+++ + +KNL + + +DL + F P V T G ++ F+ ++ KA
Sbjct: 188 KEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKA 247
Query: 275 LNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNN-ASMENIKAKHWKSQED-SVQFAE 331
+++ N GKQ+ + + K K + + M+ K K + +D SV+
Sbjct: 248 VDEMNGKDLNGKQIYVGRAQK----KVERQTELKHKFGQMKQDKPKIEQVPQDRSVR--- 300
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
+ ++V+NL + ++ L K F +G + + E ++KGF V F PE A
Sbjct: 301 --CQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA--KVTMEGGRSKGFGFVCFSSPEEA 356
Query: 392 TQAYQHLDGTVFLGRMLHLIPGKPKE 417
T+A ++G + + L++ + KE
Sbjct: 357 TKAVTEMNGRIVATKPLYVALAQRKE 382
Score = 83 (34.3 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D+ T ++ G+A V F E A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 75 (31.5 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G IFV+NL ++ L F +G + + D+ + +KG+ V F E A +A +
Sbjct: 99 GNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIE 156
Query: 397 HLDGTVFL 404
++G +FL
Sbjct: 157 KMNG-MFL 163
Score = 61 (26.5 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVR-----TT--FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R TT LG A + F+ ++ +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N KGK + I +D S + SG +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
Score = 53 (23.7 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + T + +A + + + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQLEDAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 154 (59.3 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASD 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRAMNGESLDGRQIRV 79
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF+ GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQR-----SRGFGFITFTDPEHASD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ + SLD QI + + ++
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 153 (58.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRAMNGESLDGRQIRV 79
Score = 126 (49.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASN 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ + SLD QI + + ++
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 153 (58.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRAMNGESLDGRQIRV 79
Score = 126 (49.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASV 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ + SLD QI + + ++
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 144 (55.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 44/170 (25%), Positives = 77/170 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F + G SV V KS G+GFV F E
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKS------RGFGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ I + R+ + +E + T +KRK + + G + V+N+
Sbjct: 245 QKAVDDMNGKDLNGKAIFVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 304 GIDDERLRKEFTPFGSITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 120 (47.3 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 46/184 (25%), Positives = 84/184 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+E F +G V++ G RGFGFV F +A++A+ + L G+ + +
Sbjct: 208 KEWFGQYGAALSVKVMTD--DHGKSRGFGFVSFERHEDAQKAVDDM-NGKDLNGKAIFVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 82 (33.9 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P K GN+ K + I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 68 (29.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AY+ F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KGK + I +D S + SG + N + S++N
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 112
Score = 50 (22.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 11/63 (17%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 88 IKV 90
+++
Sbjct: 82 VRI 84
Score = 43 (20.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + + F+ + ++ A+ A+D N+ V
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 169 FVGRFKSRK 177
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWS 87
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 141 (54.7 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 49/205 (23%), Positives = 92/205 (44%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +Y+KNL+ + E ++ F + G + SV V R G S G+GFV F E
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDS----GH--SRGFGFVNFEKHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + + + + R+ + +E + +R K + + G + V+N+
Sbjct: 245 QKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDS 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F +G + K M G +GFGFV F + EA +A+ + + + G
Sbjct: 305 IDDEKLRKEFSPYG---VITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEM--NGRIVG 359
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRY 780
+ L + A+ + + I TN+Y
Sbjct: 360 TKPLYVALAQRKEERKAIL--TNQY 382
Score = 137 (53.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 49/195 (25%), Positives = 90/195 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL + ++ F G I S V + G S G+GFV F T E+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEH----G---SRGFGFVHFETHEAAQN 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L++ ++ + E E R A + + I V+N+ + +
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREVELGAR-----AMEF-TNIYVKNLHVDVDEQRL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG++ V++ + SG RGFGFV F EA++A+ + + GR L +
Sbjct: 208 QDLFSQFGKMLSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVVNM-NGREVSGRLLYVG 264
Query: 763 WAEE-ADNVEDIRKR 776
A++ + ++++R
Sbjct: 265 RAQKRVERQNELKRR 279
Score = 117 (46.2 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 54/206 (26%), Positives = 90/206 (43%)
Query: 319 HWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+ E V+ E I+V+NL V E L LF ++G + V + D ++ +
Sbjct: 172 HFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDA 437
+GF V F E A +A +++G GR+L++ G+ ++ V+ + +R+ +
Sbjct: 231 RGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV--GRAQKR---VERQNEL---KRRFEQ 282
Query: 438 FNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQ 492
Q R + + L VKNL L+ F P+G + V G G V F
Sbjct: 283 MKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSS 342
Query: 493 KNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 343 PEEATKAVTEMNGRIVGTKPLYVALA 368
Score = 86 (35.3 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V G+ + ++ PG K GN+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNI 101
Score = 60 (26.2 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD 305
N KG+ + I +D + SG +
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGN 100
Score = 56 (24.8 bits), Expect = 8.4e-07, Sum P(3) = 8.4e-07
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 6 SGPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIG 64
SGP P + + DL +T+ L KF G + +++ + + +A+I
Sbjct: 4 SGPGYPLASLYVGDLHP-----DVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYIN 58
Query: 65 YHREDQAQAALDYFNNTYVFSSRIKV 90
+ + A+ ALD N + I++
Sbjct: 59 FQQPADAERALDTMNFEVIKGQPIRI 84
Score = 41 (19.5 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
I +KNL D KAL++ F G +L
Sbjct: 101 IFIKNLEDSI---DNKALYDTFSTFGNIL 126
Score = 41 (19.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
I + L F G + ++ G R F F+ + + AQ A+ N + ++
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Query: 89 KV 90
V
Sbjct: 169 FV 170
Score = 39 (18.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWS 87
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 142 (55.0 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 56/208 (26%), Positives = 93/208 (44%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V + G S GYGFV F T E+ N+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH----G---SRGYGFVHFETHEAANR 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + E E + V + T + ++N +
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRREREL----EYGAKVMEFTN--VYIKNFGEDMDDKRL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL----CQSTHLY-GR 757
E+F AFG V++ M SG RGFGFV + EA++A+ + +Y GR
Sbjct: 208 REIFSAFGNTLSVKV--MMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ + +E E I++ R NRY G
Sbjct: 266 AQKRIERQSELKRKFEQIKQERINRYQG 293
Score = 128 (50.1 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 38/169 (22%), Positives = 73/169 (43%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + + +R F G SV V +S G+GFV + E
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRS------RGFGFVNYGNHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + ++ I + R+ + +E ++ ++ K + + G + V+N+
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F +G + ++ M G +GFGFV F + EA +A+
Sbjct: 305 IDDDRLRKEFLPYGTITSAKV---MTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 83 (34.3 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+++ +L VTE L + F GP+ + + D T ++ +A + F P A +A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V GR + ++ PG K GNV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101
Score = 68 (29.0 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +F++NL ++ L F +G + + D+ ++G+ V F E A +A Q
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQ 156
Query: 397 HLDGTVFLGRMLHLIPGKPK-ENEGNVDGKV 426
++G + R + + K + E E KV
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRRERELEYGAKV 187
Score = 56 (24.8 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 25/101 (24%), Positives = 44/101 (43%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ + +L V + L F P P+ S+R L AYI F+ + +AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KG+ + I +D + SG + N + S++N
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDN 112
Score = 53 (23.7 bits), Expect = 8.8e-08, Sum P(3) = 8.8e-08
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A+I + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 41 (19.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 431 SERKLDAFN-QVVEARSKRIIL-----------VKNLPYRTLPT--DLKALFEPFGDLGR 476
+ER LD N +V++ R RI+ V N+ + L D KAL++ F G
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGN 124
Query: 477 VL 478
+L
Sbjct: 125 IL 126
Score = 38 (18.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ + K P+ + W+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWS 87
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 150 (57.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 46/161 (28%), Positives = 75/161 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+YIKN + ++ ++ F K GP SV V + KS G +GFV F E +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDAQK 246
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ QI + R+ + +E + T +KR + + ++ V N+ + +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRTFEQMKQDRITRYQVVNLYVKNLDDGI 305
Query: 703 --EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
E L KAF + K M+ G +GFGFV F + EA
Sbjct: 306 DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Score = 124 (48.7 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 48/195 (24%), Positives = 89/195 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++KNL+ + ++ G I S V ++ G S GYGFV F T E+ +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDEN----G---SKGYGFVHFETHEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+K + L+ ++ + + E EA R AK+ + + ++N +
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-----AKEFPN-VYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEEADNVEDIRKRT 777
A++ + KRT
Sbjct: 265 RAQKKVERQTELKRT 279
Score = 114 (45.2 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 56/239 (23%), Positives = 105/239 (43%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YSGAADDNNNA 310
S+R + +G ++ D+ NKAL S + G L+ +N +K Y + + A
Sbjct: 92 SLRKSGVGNIFVKNLDKSINNKALYDTVSAF-GNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 311 SMENIKAKH-------------WKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
+ IK + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDL 474
+ V+ + +R + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI 320
Score = 65 (27.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T + +A V F + A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V G+ + ++ P K GN+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101
Score = 57 (25.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 261 AYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI-KAK 318
AY+ F+ K+ AL+ N KGK + I +D S + SG N ++N+ K+
Sbjct: 55 AYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDKSI 110
Query: 319 HWKSQEDSV 327
+ K+ D+V
Sbjct: 111 NNKALYDTV 119
Score = 56 (24.8 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL--KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+T+ L KF G + +++ T G +A++ + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRICRDLITSGS-SNYAYVNFQHTKDAEHALDTMNFDVIKGK 80
Query: 87 RIKV 90
+++
Sbjct: 81 PVRI 84
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 151 (58.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ G++FV L++ TE+ L ++F KYG +AEV++ D+E+ +++GF VTF PE A A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 395 YQHLDGTVFLGRMLHLIPGKPKENE 419
++G GR + + N+
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSND 88
Score = 124 (48.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNF +TE+S+ + F K G +A V V + ++ K S G+GFV F E
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKR-----SRGFGFVTFENPEDAKD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A+ + S+D QI + ++ ++
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKS 85
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 151 (58.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 394 AYQHLDGTVFLGRMLHL 410
+ ++G GR + +
Sbjct: 63 VMRAMNGESLDGRQIRV 79
Score = 124 (48.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFGFITFTNPEHASD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
++ + SLD QI + + ++
Sbjct: 63 VMRAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G +F+ L++ E L F +GP++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASD 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 63 AMRPMNGKSLDGRQIRV 79
Score = 116 (45.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI+ V V + ++ + S G+ F+ F E +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQR-----SRGFCFITFTNPEHASD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNR 664
A++ + SLD QI + + +
Sbjct: 63 AMRPMNGKSLDGRQIRVDHAGK 84
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 139 (54.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 42/169 (24%), Positives = 81/169 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++S+R F K G SV V KD + G+ S +GFV F + ++
Sbjct: 190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVM--KD--ASGK--SKRFGFVSFDSHKAA 243
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
A++ + ++ I + R+ + +E +A + K + + +K+ ++N+
Sbjct: 244 KNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDT 303
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + V++ M +G +GFG + F + A +AM
Sbjct: 304 IDDETLRKEFSVFGSICRVKV---MQEAGQSKGFGLICFFSPEAAAKAM 349
Score = 117 (46.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 38/164 (23%), Positives = 75/164 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ HF G I S V ++ G S GYGFV + + + ++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEE----G---SKGYGFVHYQDQRAADR 152
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L + + + R + EA ++ K + + + ++N +
Sbjct: 153 AIEEMNGKLLRDSTLFVARFKSRKDREAE-LREKPAEF-----TNVYIKNFGDDMDDESL 206
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+F +G+ V++ K SG + FGFV F + AK A++
Sbjct: 207 RSVFSKYGQTLSVKVMKD--ASGKSKRFGFVSFDSHKAAKNAVE 248
Score = 112 (44.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 21/80 (26%), Positives = 46/80 (57%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
++ +++++NL T+ ++ L K F +G + V + +E ++KGF L+ F PE A +A
Sbjct: 291 QAAKLYIKNLDDTIDDETLRKEFSVFGSICRV--KVMQEAGQSKGFGLICFFSPEAAAKA 348
Query: 395 YQHLDGTVFLGRMLHLIPGK 414
++G + + L++ G+
Sbjct: 349 MAEMNGRILGSKPLNIALGQ 368
Score = 103 (41.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 57/259 (22%), Positives = 112/259 (43%)
Query: 236 VKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKD 295
+K K ++ + A +R + +G +I D+ NK L ++ S + GK ++ + +
Sbjct: 76 IKGKSIRLMWSQRD-ACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF-GKIMSSKVMTDE 133
Query: 296 NSAKYSG--------AAD---DNNNASM---ENIKAKHWKSQED-SVQFAEDIAESGRIF 340
+K G AAD + N + + +KS++D + E AE ++
Sbjct: 134 EGSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVY 193
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
++N + ++ L +F KYG V + D + K+K F V+F + A A + ++G
Sbjct: 194 IKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNG 252
Query: 401 TVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTL 460
G+ + + G+ ++ V+ + + E + + AR + +KNL
Sbjct: 253 RDINGQTIFV--GRAQKK---VERQAE--LKEMFEQMKKERIRARQAAKLYIKNLDDTID 305
Query: 461 PTDLKALFEPFGDLGRVLV 479
L+ F FG + RV V
Sbjct: 306 DETLRKEFSVFGSICRVKV 324
Score = 77 (32.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTED L + F GP+ + + D + ++ G+ V FL A +A + +
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 399 DGTVFLGRMLHLI 411
+ + G+ + L+
Sbjct: 72 NFDLIKGKSIRLM 84
Score = 76 (31.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LYIKNL+ ++++R+ F G I V V ++ GQ S G+G + F++ E+ +
Sbjct: 295 LYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEA-----GQ--SKGFGLICFFSPEAAAK 347
Query: 643 ALKVLQNSSLDEHQIEL 659
A+ + L + +
Sbjct: 348 AMAEMNGRILGSKPLNI 364
Score = 64 (27.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 32 EQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
E L++ F + G V++ GK +RF F+ + A+ A++ N
Sbjct: 204 ESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Score = 58 (25.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/107 (20%), Positives = 46/107 (42%)
Query: 217 APVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTT---FLGMAYIGFKDEKN 270
A + K + +KNL + K L +F P + + V T G ++ ++D++
Sbjct: 90 ACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRA 149
Query: 271 CNKALNK-NKSFWKGKQLNI--YKYSKDNSAKYSGAADDNNNASMEN 314
++A+ + N + L + +K KD A+ + N ++N
Sbjct: 150 ADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKN 196
Score = 45 (20.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
G V FLQ A+ A ++ + K + L W+
Sbjct: 54 GYVNFLQVGDAQKALETMNFDLIKGKSIRLMWS 86
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 125 (49.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 39/140 (27%), Positives = 73/140 (52%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 535 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 584
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 585 KTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 640
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 641 EAM-EDGEIDGNKVTLDWAK 659
Score = 124 (48.7 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 34/138 (24%), Positives = 67/138 (48%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + L+ Q + +D I L + +++ R N
Sbjct: 441 SKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDF---RGGKNSTWSGE 497
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + F+++P+ +G +G+ F+EF + +AK A
Sbjct: 498 SKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 552
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 553 LNS-CNKREIEGRAIRLE 569
Score = 95 (38.5 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 584 SKTLFVKGLSEETTEETLKESFD--GSIRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 640
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 641 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 669
Score = 90 (36.7 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + +
Sbjct: 408 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTLEEK 462
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +N+ GK
Sbjct: 463 QGTEIDGRSISLYYTGEKGQNQDFRGGK 490
Score = 88 (36.0 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NL+Y+ TE+ L ++FEK A I + K+KG+A + F E A +A
Sbjct: 497 ESKTLVLSNLAYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 552
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 553 LNSCNKREIEGRAIRL 568
Score = 88 (36.0 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 394 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 453
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN 314
+ K L K + G+ +++Y Y+ + N+ S E+
Sbjct: 454 DAEKTLEEKQGTEIDGRSISLY-YTGEKGQNQDFRGGKNSTWSGES 498
Score = 82 (33.9 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ +TE++++ F G I AR + G S G+GFV F + E
Sbjct: 586 TLFVKGLSEETTEETLKESFD--GSIR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 637
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 638 AAKEAMEDGEIDGNKVTL 655
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 27/110 (24%), Positives = 52/110 (47%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL +++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 500 TLVLSNLAYSATEETLQEVFEKA---TFIKVPQNQNGKSKG------YAFIEFASFEDAK 550
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S ++T
Sbjct: 551 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEET 600
Score = 71 (30.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ L+ T +
Sbjct: 415 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 467
Score = 64 (27.6 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFE 469
R R +L KNLPY+ +LK +FE
Sbjct: 403 RDARTLLAKNLPYKVTQDELKEVFE 427
Score = 54 (24.1 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 335 ELKTGISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 393
Score = 53 (23.7 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 579 ARSQPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 636
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 637 KAAKEAMEDGEIDGNKVTLDWAKPKG 662
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 164 (62.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 77
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 78 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 136
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 137 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 183
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 51/205 (24%), Positives = 89/205 (43%)
Query: 320 WKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
+KS+++ + E ++++N + ++ L LF K+GP V + D E+ K+K
Sbjct: 6 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSK 64
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAF 438
GF V+F E A +A ++G G+ +++ G+ ++ V+ + +RK +
Sbjct: 65 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKK---VERQTEL---KRKFEQM 116
Query: 439 NQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQK 493
Q R + + L VKNL L+ F PFG + V G G V F
Sbjct: 117 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSP 176
Query: 494 NQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 177 EEATKAVTEMNGRIVATKPLYVALA 201
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 44/169 (26%), Positives = 85/169 (50%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++KN+ + ++ ++ F + GP SV V R KS G +GFV++ T E+
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG------FGFVRYETHEAA 88
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ L S+D + + R+ + +E A +R + ++ G I ++N+
Sbjct: 89 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 148
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++E F +FG + ++ + VG G +GFG V F + EA +A+
Sbjct: 149 INDEKLKEEFSSFGSISRAKVMME-VGQG--KGFGVVCFSSFEEATKAV 194
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I+++NL T+ ++ L + F +G ++ + E + KGF +V F E AT+A +
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRA--KVMMEVGQGKGFGVVCFSSFEEATKAVDEM 197
Query: 399 DGTVFLGRMLHLIPGKPK 416
+G + + LH+ G+ +
Sbjct: 198 NGRIVGSKPLHVTLGQAR 215
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQ-AALDYFNNT------ 81
I E+LK F E G V++ GK + F F+ Y + AQ A LD +
Sbjct: 46 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 105
Query: 82 YVFSSRIKVEKCSNL 96
YV ++ K+E+ + L
Sbjct: 106 YVGRAQKKIERLAEL 120
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 156 (60.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 47/165 (28%), Positives = 78/165 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+YIKN + ++ ++ F K GP SV V + KS G +GFV F E +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDAQK 246
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + L+ QI + R+ + +E + T +KR + + ++ V N+ + +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRTFEQMKQDRITRYQVVNLYVKNLDDGI 305
Query: 703 --EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
E L KAF + K M+ G +GFGFV F + EA +A+
Sbjct: 306 DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 48/195 (24%), Positives = 89/195 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++KNL+ + ++ G I S V ++ G S GYGFV F T E+ +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDEN----G---SKGYGFVHFETHEAAER 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+K + L+ ++ + + E EA R AK+ + + ++N +
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-----AKEFPN-VYIKNFGEDMDDERL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
++LF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 208 KDLFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 264
Query: 763 WAEEADNVEDIRKRT 777
A++ + KRT
Sbjct: 265 RAQKKVERQTELKRT 279
Score = 117 (46.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 67/287 (23%), Positives = 119/287 (41%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAK-YSGAADDNNNA 310
S+R + +G ++ D+ NKAL S + G L+ +N +K Y + + A
Sbjct: 92 SLRKSGVGNIFVKNLDKSINNKALYDTVSAF-GNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 311 SMENIKAKH-------------WKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
+ IK + +KS+++ + E ++++N + ++ L L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 211 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 267
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +R + Q R + + L VKNL L+ F PFG +
Sbjct: 268 KK---VERQTEL---KRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT 321
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Score = 65 (27.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T + +A V F + A A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V G+ + ++ P K GN+
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI 101
Score = 57 (25.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 261 AYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI-KAK 318
AY+ F+ K+ AL+ N KGK + I +D S + SG N ++N+ K+
Sbjct: 55 AYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDKSI 110
Query: 319 HWKSQEDSV 327
+ K+ D+V
Sbjct: 111 NNKALYDTV 119
Score = 56 (24.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL--KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+T+ L KF G + +++ T G +A++ + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPILSIRICRDLITSGS-SNYAYVNFQHTKDAEHALDTMNFDVIKGK 80
Query: 87 RIKV 90
+++
Sbjct: 81 PVRI 84
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 135 (52.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 43/180 (23%), Positives = 86/180 (47%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+++ L T + F++ GP+ + R K G+ S G +V+F +S+
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDK---ISGR--SKGVAYVEFCHEDSVQ 295
Query: 642 QALKVLQNSSLDEHQI-ELKRSNRNLES-EATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
A+ + L I +L + +N ++ EA + R +S A+ ++ V NI F
Sbjct: 296 AAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAAS--AEIPFHRLCVSNIHFNLTD 353
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+V+ +F+ FG+++FV L + +GFG++++ A+ A++ + L GR +
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRD--DQNRSKGFGYIQYRNPISARNALEKM-NGFDLAGRNM 410
Score = 132 (51.5 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 53/186 (28%), Positives = 87/186 (46%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
S+ + Y DD+ S E +++ + +E S + +E+ + +FV L+ +T +
Sbjct: 199 SRAHDYDYEDLRDDDR--SHERKRSRS-RPRERSSKLSEEERDRRTVFVSQLANRLTSRE 255
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412
L FE+ GP+ + + DK + ++KG A V F E + QA L G LG L +I
Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH-EDSVQAAIALSGKRLLG--LPVIV 312
Query: 413 GKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI----ILVKNLPYRTLPTDLKALF 468
+ E E N RK ++ A S I + V N+ + D+KA+F
Sbjct: 313 -QLTEAEKN-----------RKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 469 EPFGDL 474
EPFGD+
Sbjct: 361 EPFGDI 366
Score = 102 (41.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V N+ + +T++D+ +FE +G + V L D + +++KGF + + P A A +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEK 399
Query: 398 LDGTVFLGRMLHLIPGKPK 416
++G GR + + G K
Sbjct: 400 MNGFDLAGRNMRVCLGNDK 418
Score = 92 (37.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 28/112 (25%), Positives = 52/112 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L + N++FN T++ ++ F+ G I V + R +S G +G++Q+ S
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKG------FGYIQYRNPISARN 395
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATT--VKRKSSNVAKQTGSKILVRN 692
AL+ + L + + N +E T+ +KR +A+Q S+ RN
Sbjct: 396 ALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRN 447
Score = 68 (29.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 28 KITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAAL 75
++T +L FE+ G V D Q+ + G+ + A++ + ED QAA+
Sbjct: 250 RLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
Score = 40 (19.1 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 199 TKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKN 231
T S + PS+P PP +H R + V KN
Sbjct: 38 TSSTHSHPSNPPPPPTR---LHDRSFKP-VSKN 66
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 125 (49.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 39/140 (27%), Positives = 73/140 (52%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 176 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 225
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 226 KTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 281
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 282 EAM-EDGEIDGNKVTLDWAK 300
Score = 124 (48.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 34/138 (24%), Positives = 67/138 (48%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + L+ Q + +D I L + +++ R N
Sbjct: 82 SKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDF---RGGKNSTWSGE 138
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + F+++P+ +G +G+ F+EF + +AK A
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 193
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 194 LNS-CNKREIEGRAIRLE 210
Score = 95 (38.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 225 SKTLFVKGLSEETTEETLKESFD--GSIRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 281
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 282 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 310
Score = 90 (36.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + +
Sbjct: 49 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTLEEK 103
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +N+ GK
Sbjct: 104 QGTEIDGRSISLYYTGEKGQNQDFRGGK 131
Score = 88 (36.0 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NL+Y+ TE+ L ++FEK A I + K+KG+A + F E A +A
Sbjct: 138 ESKTLVLSNLAYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 193
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 194 LNSCNKREIEGRAIRL 209
Score = 88 (36.0 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 35 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 94
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMEN 314
+ K L K + G+ +++Y Y+ + N+ S E+
Sbjct: 95 DAEKTLEEKQGTEIDGRSISLY-YTGEKGQNQDFRGGKNSTWSGES 139
Score = 82 (33.9 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ +TE++++ F G I AR + G S G+GFV F + E
Sbjct: 227 TLFVKGLSEETTEETLKESFD--GSIR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 278
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 279 AAKEAMEDGEIDGNKVTL 296
Score = 77 (32.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/110 (24%), Positives = 52/110 (47%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL +++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 141 TLVLSNLAYSATEETLQEVFEKA---TFIKVPQNQNGKSKG------YAFIEFASFEDAK 191
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S ++T
Sbjct: 192 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEET 241
Score = 71 (30.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ L+ T +
Sbjct: 56 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Score = 64 (27.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFE 469
R R +L KNLPY+ +LK +FE
Sbjct: 44 RDARTLLAKNLPYKVTQDELKEVFE 68
Score = 53 (23.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 220 ARSQPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 277
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 278 KAAKEAMEDGEIDGNKVTLDWAKPKG 303
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 148 (57.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ E L F +GP+ EV++ D ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASN 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A + +G GR +H+
Sbjct: 63 AMRATNGESLDGRQIHV 79
Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFN+ E ++ HF GPI V V + + + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRR-----SQGFGFITFTNPEHASN 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A++ SLD QI + + ++
Sbjct: 63 AMRATNGESLDGRQIHVDHAGKS 85
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+++ G++F+ L++ E+ L ++F KYG ++EV++ D+ET +++GF VTF P+ A
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 393 QAYQHLDGTVFLGRMLHL 410
A ++G GR + +
Sbjct: 61 DAMMAMNGKAVDGRQIRV 78
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I LNF++ E+S+ + F K G I+ V V + ++ K S G+GFV F +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKR-----SRGFGFVTFENPDDAKD 61
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A+ + ++D QI + ++ ++
Sbjct: 62 AMMAMNGKAVDGRQIRVDQAGKS 84
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 123 (48.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 34/138 (24%), Positives = 66/138 (47%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + + Q + +D I L + +S+ R N
Sbjct: 433 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDY---RGGKNSTWSGE 489
Query: 686 SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
SK LV N+ + A + ++E+F+ + F+++P+ +G +G+ F+EF + +AK A
Sbjct: 490 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ--NGKSKGYAFIEFASFEDAKEA 544
Query: 745 MKALCQSTHLYGRRLVLE 762
+ + C + GR + LE
Sbjct: 545 LNS-CNKREIEGRAIRLE 561
Score = 122 (48.0 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 527 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 576
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 577 KTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 632
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 633 EAM-EDGEIDGNKVTLDWAK 651
Score = 94 (38.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 576 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 632
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 633 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 661
Score = 91 (37.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK A I + K+KG+A + F E A +A
Sbjct: 489 ESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 544
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 545 LNSCNKREIEGRAIRL 560
Score = 90 (36.7 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + ++
Sbjct: 400 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTFEEK 454
Query: 399 DGTVFLGRMLHLI-PGKPKENEGNVDGK 425
GT GR + L G+ +++ GK
Sbjct: 455 QGTEIDGRSISLYYTGEKGQSQDYRGGK 482
Score = 90 (36.7 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 32/124 (25%), Positives = 56/124 (45%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 386 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 445
Query: 270 NCNKALN-KNKSFWKGKQLNIYKYS--KDNSAKYSGAADDNNNASMENIKAKH--WKSQE 324
+ K K + G+ +++Y Y+ K S Y G + + + + + + + E
Sbjct: 446 DAEKTFEEKQGTEIDGRSISLY-YTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATE 504
Query: 325 DSVQ 328
+++Q
Sbjct: 505 ETLQ 508
Score = 82 (33.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G + AR + G S G+GFV F + E
Sbjct: 578 TLFVKGLSEDTTEETLKESFD--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 629
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 630 AAKEAMEDGEIDGNKVTL 647
Score = 81 (33.6 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 492 TLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKG------YAFIEFASFEDAK 542
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 543 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 592
Score = 69 (29.3 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL--VEFLQKNQAKAAFNS 502
R R +L KNLPY+ +LK +FE ++ R++ G+ +EF + A+ F
Sbjct: 395 RDARTLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKSKGIAYIEFKTEADAEKTFEE 453
Query: 503 LAYTKF--KEVPLY 514
T+ + + LY
Sbjct: 454 KQGTEIDGRSISLY 467
Score = 68 (29.0 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ + T +
Sbjct: 407 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 462
Query: 87 RIKVEKCSNLGDTT-----KPKSWS 106
I + G + K +WS
Sbjct: 463 SISLYYTGEKGQSQDYRGGKNSTWS 487
Score = 54 (24.1 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 327 ELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 385
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 131 (51.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 31/119 (26%), Positives = 61/119 (51%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E+I+++ R+ +N+ +T T +D+ LFEKYG + ++ + + K+ ++ +G + PE
Sbjct: 89 EEISKT-RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKK-ERNRGLVFIEMASPEE 146
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRI 449
A A + L+ + GR L + K K+ + + + L N EAR+K +
Sbjct: 147 AATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHL 205
Score = 79 (32.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 583 LYIKNLNFNSTEDSIRRHFKK-CGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
L++ NL F + ++ F G + S V ++P+ S GYGFV F T++
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRR-----SSGYGFVSFKTKKQAE 245
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEA 670
AL Q I L +S + ++ +A
Sbjct: 246 AALIEFQGKDFLGRPIRLAKSKQFVKLQA 274
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 110 (43.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+++ N+ TVT + LTKL E++G + +V + DK + +++ F T E A +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 398 LDGTVFLGRMLHL-IPGKP 415
L+G GR + + I KP
Sbjct: 137 LNGNTVEGREIKVNITEKP 155
Score = 98 (39.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+Y+ NL T++ + F + G + S V+R PG S G+GFV F + E +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRV-----PGTSKSTGFGFVTFSSEEDVEA 233
Query: 643 ALKVLQNSSLDEHQIELKRS 662
A+ L NS L+ +I + ++
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 94 (38.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 314 NIKAKHWKSQED-SVQFAEDIA--ESG-RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP 369
NI K S D SV +ED A +S +++V NL+ TVT++ L LF + G + +
Sbjct: 150 NITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVS 209
Query: 370 IDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
T K+ GF VTF E A L+ ++ G+ + +
Sbjct: 210 RVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 90 (36.7 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 32/89 (35%), Positives = 40/89 (44%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTT-EGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T EQL EE G V VQ+ Y G+ RRF F + A A ++ N V
Sbjct: 87 VTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGRE 146
Query: 88 IKVEKCSNLGDTTKPKSWSKYAPDSSAYQ 116
IKV N+ T KP + S PD S Q
Sbjct: 147 IKV----NI--TEKPIASS---PDLSVLQ 166
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 140 (54.3 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 47/172 (27%), Positives = 78/172 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +++KN + ++ + F K G I S V K P G+GFV F +++
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGK-P-----KGFGFVAFADQDAA 291
Query: 641 NQALKVLQNSSLDEHQIEL------KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694
QA++ L +S L+ +L K+S R+ E + K V + G + V+NI
Sbjct: 292 GQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIE 351
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAM 745
+ + F +FG + ++ MV +G +GFGFV F EA A+
Sbjct: 352 EDLNDDGLRDHFSSFGTITSAKV---MVDENGRSKGFGFVCFEKPEEATAAV 400
Score = 124 (48.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 45/169 (26%), Positives = 74/169 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ S+ F G I S VA + G S GYGFV F T S
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE----GN--SKGYGFVHFETEHSAQT 200
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L + ++ + + + A +K + K T + V+N Q ++
Sbjct: 201 AIEKVNGMLLSDKKVYVGK----FQPRAQRMKELGESGLKYTN--VFVKNFGEHLDQEKL 254
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQS 751
+F FGE+ + G +GFGFV F ++ A +A++ L S
Sbjct: 255 SAMFSKFGEITSAVVMTD--AQGKPKGFGFVAFADQDAAGQAVEKLNDS 301
Score = 118 (46.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 49/204 (24%), Positives = 89/204 (43%)
Query: 223 QYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLG----MAYIGFKDEKNCNKAL 275
+Y + VKN + ++ L A F + A V T G ++ F D+ +A+
Sbjct: 236 KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAV 295
Query: 276 NK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIA 334
K N S +G K S + K S S E +K K+ +++ VQ + +
Sbjct: 296 EKLNDSILEGTDC---KLSVCRAQKKS-------ERSAE-LKRKYEALKQERVQRYQGV- 343
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
++V+N+ + +D L F +G + + +D E ++KGF V F PE AT A
Sbjct: 344 ---NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAA 399
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
++ + + L++ + KE+
Sbjct: 400 VTDMNSKMIGAKPLYVALAQRKED 423
Score = 75 (31.5 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 320 WKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKG 379
W SQ D A A +G IF++NL + + F +G + + D E + +KG
Sbjct: 132 W-SQRDP---AARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN-SKG 186
Query: 380 FALVTFLMPEHATQ-AYQHLDGTVFLGRMLHLIPGKPK 416
+ V F EH+ Q A + ++G + + +++ +P+
Sbjct: 187 YGFVHF-ETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR 223
Score = 71 (30.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+++ +L V+E L + F GP+ + + D + + G+A V F P A +A +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNV 422
+ V GR + ++ P + GN+
Sbjct: 119 NFEVIHGRPMRIMWSQRDPAARRAGNGNI 147
Score = 57 (25.1 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENI 315
LG AY+ F+ + +AL+ N G+ + I +D +A+ +G N N ++N+
Sbjct: 98 LGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAG----NGNIFIKNL 152
Score = 57 (25.1 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 17/79 (21%), Positives = 34/79 (43%)
Query: 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQA 73
+I + +LD V I + + F G + ++ EG + + F+ + E AQ
Sbjct: 146 NIFIKNLDRV-----IDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQT 200
Query: 74 ALDYFNNTYVFSSRIKVEK 92
A++ N + ++ V K
Sbjct: 201 AIEKVNGMLLSDKKVYVGK 219
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFN 79
+++ L KF G V +++ + T +A++ + + A+ ALD N
Sbjct: 68 VSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 168 (64.2 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 54/180 (30%), Positives = 83/180 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKK--------DPKSPGQFLSMGYGFV 632
T L + L TED IR F G I SV + R K +P++P + S+GYGFV
Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFV 208
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRN 692
+ + QA+ VL L+ N+ ++ + R SS+ K G+ + V
Sbjct: 209 NYVRPQDAEQAVNVLNG---------LRLQNKTIK---VSFARPSSDAIK--GANLYVSG 254
Query: 693 IPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQST 752
+P Q E+E +F FG + R+ + +G GF+ F + EA RA+ AL +T
Sbjct: 255 LPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTT 314
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 123 (48.4 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 437 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 486
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 487 KTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 542
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 543 EAM-EDGEIDGNKVTLDWAK 561
Score = 98 (39.6 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 29/137 (21%), Positives = 67/137 (48%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + L+ Q + +D + E +S + + +T +S
Sbjct: 350 SKGIAYIEFKTEADAEKTLEEKQGTEID-YTGEKGQSQDHRGGKNSTWSGESKT------ 402
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++ N+ + A + ++E+F+ + +++P+ +G +G+ F+EF + +AK A+
Sbjct: 403 --LVLSNLSYSATEETLQEVFE---KATHIKVPQNQ--NGKSKGYAFIEFASFEDAKEAL 455
Query: 746 KALCQSTHLYGRRLVLE 762
+ C + GR + LE
Sbjct: 456 NS-CNKREIEGRAIRLE 471
Score = 95 (38.5 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 486 SKTLFVKGLSEDTTEETLKESFD--GSIRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 542
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 543 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 571
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK + +P + K+KG+A + F E A +A
Sbjct: 399 ESKTLVLSNLSYSATEETLQEVFEK---ATHIKVP-QNQNGKSKGYAFIEFASFEDAKEA 454
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 455 LNSCNKREIEGRAIRL 470
Score = 84 (34.6 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 30/121 (24%), Positives = 54/121 (44%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 303 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 362
Query: 270 NCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKH--WKSQEDSV 327
+ K L + + G +++ Y K S + G + + + + + + + E+++
Sbjct: 363 DAEKTLEEKQ----GTEID-YTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 417
Query: 328 Q 328
Q
Sbjct: 418 Q 418
Score = 83 (34.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G I AR + G S G+GFV F + E
Sbjct: 488 TLFVKGLSEDTTEETLKESFD--GSIR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 539
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 540 AAKEAMEDGEIDGNKVTL 557
Score = 82 (33.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 402 TLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKG------YAFIEFASFEDAK 452
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 453 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 502
Score = 75 (31.5 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + +
Sbjct: 317 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTLEEK 371
Query: 399 DGT 401
GT
Sbjct: 372 QGT 374
Score = 75 (31.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ L+ T + +
Sbjct: 324 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYT 379
Query: 87 RIKVEKCSNLGDTTKPKSWS 106
K + + G K +WS
Sbjct: 380 GEKGQSQDHRGG--KNSTWS 397
Score = 64 (27.6 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFE 469
R R +L KNLPY+ +LK +FE
Sbjct: 312 RDARTLLAKNLPYKVTQDELKEVFE 336
Score = 54 (24.1 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 244 ELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 302
Score = 51 (23.0 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 481 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 538
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 539 KAAKEAMEDGEIDGNKVTLDWAKPKG 564
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 123 (48.4 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 442 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 491
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 492 KTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 547
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 548 EAM-EDGEIDGNKVTLDWAK 566
Score = 98 (39.6 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 29/137 (21%), Positives = 67/137 (48%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + L+ Q + +D + E +S + + +T +S
Sbjct: 355 SKGIAYIEFKTEADAEKTLEEKQGTEID-YTGEKGQSQDHRGGKNSTWSGESKT------ 407
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++ N+ + A + ++E+F+ + +++P+ +G +G+ F+EF + +AK A+
Sbjct: 408 --LVLSNLSYSATEETLQEVFE---KATHIKVPQNQ--NGKSKGYAFIEFASFEDAKEAL 460
Query: 746 KALCQSTHLYGRRLVLE 762
+ C + GR + LE
Sbjct: 461 NS-CNKREIEGRAIRLE 476
Score = 95 (38.5 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFD--GSIRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 547
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 548 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 576
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK + +P + K+KG+A + F E A +A
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFEK---ATHIKVP-QNQNGKSKGYAFIEFASFEDAKEA 459
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 460 LNSCNKREIEGRAIRL 475
Score = 84 (34.6 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 30/121 (24%), Positives = 54/121 (44%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 308 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 367
Query: 270 NCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKH--WKSQEDSV 327
+ K L + + G +++ Y K S + G + + + + + + + E+++
Sbjct: 368 DAEKTLEEKQ----GTEID-YTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 422
Query: 328 Q 328
Q
Sbjct: 423 Q 423
Score = 83 (34.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G I AR + G S G+GFV F + E
Sbjct: 493 TLFVKGLSEDTTEETLKESFD--GSIR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 544
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 545 AAKEAMEDGEIDGNKVTL 562
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 407 TLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKG------YAFIEFASFEDAK 457
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 458 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 507
Score = 75 (31.5 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + +
Sbjct: 322 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTLEEK 376
Query: 399 DGT 401
GT
Sbjct: 377 QGT 379
Score = 75 (31.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ L+ T + +
Sbjct: 329 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYT 384
Query: 87 RIKVEKCSNLGDTTKPKSWS 106
K + + G K +WS
Sbjct: 385 GEKGQSQDHRGG--KNSTWS 402
Score = 64 (27.6 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFE 469
R R +L KNLPY+ +LK +FE
Sbjct: 317 RDARTLLAKNLPYKVTQDELKEVFE 341
Score = 54 (24.1 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 249 ELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 307
Score = 51 (23.0 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 486 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 543
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 544 KAAKEAMEDGEIDGNKVTLDWAKPKG 569
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 123 (48.4 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 39/140 (27%), Positives = 72/140 (51%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S GY F++F + E +AL +S ++ +IE R+ R LE + R S N Q
Sbjct: 442 SKGYAFIEFASFEDAKEAL-----NSCNKREIE-GRAIR-LELQGP---RGSPNARSQPS 491
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ V+ + + ++E F G ++ + + GS +GFGFV+F ++ +AK A
Sbjct: 492 KTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSS--KGFGFVDFNSEEDAKAAK 547
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+A+ + + G ++ L+WA+
Sbjct: 548 EAM-EDGEIDGNKVTLDWAK 566
Score = 98 (39.6 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 29/137 (21%), Positives = 67/137 (48%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G +++F T + L+ Q + +D + E +S + + +T +S
Sbjct: 355 SKGIAYIEFKTEADAEKTLEEKQGTEID-YTGEKGQSQDHRGGKNSTWSGESKT------ 407
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++ N+ + A + ++E+F+ + +++P+ +G +G+ F+EF + +AK A+
Sbjct: 408 --LVLSNLSYSATEETLQEVFE---KATHIKVPQNQ--NGKSKGYAFIEFASFEDAKEAL 460
Query: 746 KALCQSTHLYGRRLVLE 762
+ C + GR + LE
Sbjct: 461 NS-CNKREIEGRAIRLE 476
Score = 95 (38.5 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + F+ G + I+ D+ET +KGF V F E A A
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFD--GSIRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 547
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 548 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 576
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
ES + + NLSY+ TE+ L ++FEK + +P + K+KG+A + F E A +A
Sbjct: 404 ESKTLVLSNLSYSATEETLQEVFEK---ATHIKVP-QNQNGKSKGYAFIEFASFEDAKEA 459
Query: 395 YQHLDGTVFLGRMLHL 410
+ GR + L
Sbjct: 460 LNSCNKREIEGRAIRL 475
Score = 84 (34.6 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 30/121 (24%), Positives = 54/121 (44%)
Query: 213 PVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEK 269
P K R T++ KNLP V + +LK F+ + L S G+AYI FK E
Sbjct: 308 PKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEA 367
Query: 270 NCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKH--WKSQEDSV 327
+ K L + + G +++ Y K S + G + + + + + + + E+++
Sbjct: 368 DAEKTLEEKQ----GTEID-YTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 422
Query: 328 Q 328
Q
Sbjct: 423 Q 423
Score = 83 (34.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F G I AR + G S G+GFV F + E
Sbjct: 493 TLFVKGLSEDTTEETLKESFD--GSIR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 544
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 545 AAKEAMEDGEIDGNKVTL 562
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL + NL++++TE++++ F+K + V + ++ KS G Y F++F + E
Sbjct: 407 TLVLSNLSYSATEETLQEVFEKA---THIKVPQNQNGKSKG------YAFIEFASFEDAK 457
Query: 642 QALKVLQNSSLDEHQIELK----RSNRNLESEATT---VKRKSSNVAKQT 684
+AL ++ I L+ R + N S+ + VK S + ++T
Sbjct: 458 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEET 507
Score = 75 (31.5 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NL Y VT+D+L ++FE E+ L + K+ K+KG A + F A + +
Sbjct: 322 LLAKNLPYKVTQDELKEVFED---AVEIRL-VSKD-GKSKGIAYIEFKTEADAEKTLEEK 376
Query: 399 DGT 401
GT
Sbjct: 377 QGT 379
Score = 75 (31.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK+TQ++LK FE+ +++L + +GK + A+I + E A+ L+ T + +
Sbjct: 329 YKVTQDELKEVFED---AVEIRL-VSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYT 384
Query: 87 RIKVEKCSNLGDTTKPKSWS 106
K + + G K +WS
Sbjct: 385 GEKGQSQDHRGG--KNSTWS 402
Score = 64 (27.6 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFE 469
R R +L KNLPY+ +LK +FE
Sbjct: 317 RDARTLLAKNLPYKVTQDELKEVFE 341
Score = 54 (24.1 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 249 ELKTGISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 307
Score = 51 (23.0 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 444 ARSK--RIILVKNLPYRTLPTDLKALFEPFGDL-GRVLVP-PYGIT---GLVEFLQKNQA 496
ARS+ + + VK L T LK F+ G + R++ G + G V+F + A
Sbjct: 486 ARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 543
Query: 497 KAAFNSLAYTKFKEVPLYLEWA-PEG 521
KAA ++ + + L+WA P+G
Sbjct: 544 KAAKEAMEDGEIDGNKVTLDWAKPKG 569
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 166 (63.5 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 76
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 77 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 135
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 136 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 182
Score = 122 (48.0 bits), Expect = 0.00044, P = 0.00044
Identities = 51/205 (24%), Positives = 90/205 (43%)
Query: 320 WKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
+KS+++ + E ++++N + ++ L +LF K+GP V + D E+ K+K
Sbjct: 5 FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSK 63
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAF 438
GF V+F E A +A ++G G+ +++ G+ ++ V+ + +RK +
Sbjct: 64 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKK---VERQTEL---KRKFEQM 115
Query: 439 NQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQK 493
Q R + + L VKNL L+ F PFG + V G G V F
Sbjct: 116 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSP 175
Query: 494 NQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 176 EEATKAVTEMNGRIVATKPLYVALA 200
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 169 (64.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 48/201 (23%), Positives = 94/201 (46%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+++ L+++ ++ +++ F+ G + V ++ G S GYG+V F +
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYER-----GTDRSRGYGYVDFENKSYAE 223
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSE 701
+A++ +Q +D I S K K + + + + N+ F A +
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK-KFGDTPSEPSDTLFLGNLSFNADRDA 282
Query: 702 VEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVL 761
+ ELF GE+ VR+P + +GFG+V+F +AK+A+ AL Q ++ R + L
Sbjct: 283 IFELFAKHGEVVSVRIPTHPE-TEQPKGFGYVQFSNMEDAKKALDAL-QGEYIDNRPVRL 340
Query: 762 EWAEEADNVEDIRKRTNRYFG 782
+++ N D + +R FG
Sbjct: 341 DFSSPRPN-NDGGRGGSRGFG 360
Score = 127 (49.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 57/237 (24%), Positives = 101/237 (42%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDS--VQFAEDIAESGRIFVRNLSYTVTE 350
S +S+ +++N+ ++ A+ + +E S Q E+ E IFV LS+++ +
Sbjct: 122 SSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDD 181
Query: 351 DDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
+ L K FE G + + ++ TD+++G+ V F +A +A Q + G GR ++
Sbjct: 182 EWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINC 241
Query: 411 IPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEP 470
K GN D + F S + L NL + D A+FE
Sbjct: 242 DMSTSKP-AGNND----------RAKKFGDTPSEPSDTLFL-GNLSFNA---DRDAIFEL 286
Query: 471 FGDLGRVL---VPPYGIT------GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
F G V+ +P + T G V+F AK A ++L P+ L+++
Sbjct: 287 FAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343
Score = 125 (49.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 36/135 (26%), Positives = 62/135 (45%)
Query: 292 YSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE-SGRIFVRNLSYTVTE 350
Y++ + G D + + +K + + + +F + +E S +F+ NLS+
Sbjct: 221 YAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADR 280
Query: 351 DDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
D + +LF K+G + V +P ET++ KGF V F E A +A L G R + L
Sbjct: 281 DAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 340
Query: 411 IPGKPK-ENEGNVDG 424
P+ N+G G
Sbjct: 341 DFSSPRPNNDGGRGG 355
Score = 40 (19.1 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 98 DTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPG-KKSKNDPT 146
+++ S S + DS + ++ N ++ E +D + KK KN+ T
Sbjct: 115 ESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQKNEET 164
Score = 39 (18.8 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 103 KSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSD 149
K S + DSS+ ++ K++ K E +K+S S + + S+
Sbjct: 86 KDSSSSSSDSSSDEEEEE--EKEETKKEESKESSSSDSSSSSSSDSE 130
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 167 (63.8 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 50/179 (27%), Positives = 89/179 (49%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++++ L + F+K GP+ + KD S G+ S G G+V+F S+
Sbjct: 175 TIFVQQLAARLRTKELIAFFEKVGPVKEAQIV--KDRVS-GR--SKGVGYVEFKDESSVA 229
Query: 642 QALKVLQNSSLDEHQI-ELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
A+++ L I +L + +N +A + S N ++ V NI F ++
Sbjct: 230 PAIQLTGQKLLGIPIIAQLTEAEKN--RQARNSEASSGNKHSAPFHRLYVGNIHFSIDEN 287
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+++ +F+ FGEL+FV+L K G RG+GFV+F N+A+ A++ + L GR +
Sbjct: 288 DLQSVFEPFGELEFVQLQKDETGRS--RGYGFVQFRDPNQAREALEKM-NGYDLGGRAI 343
Score = 140 (54.3 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 59/204 (28%), Positives = 97/204 (47%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFK---PLPLASV---RTT--FLGMAYIGFKDEKNCN 272
+R TI V+ L A ++ K+L A+F+ P+ A + R + G+ Y+ FKDE +
Sbjct: 170 ERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVA 229
Query: 273 KALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAED 332
A+ K L I ++ A+ + A N+ AS N KH S F
Sbjct: 230 PAIQLTGQ----KLLGIPIIAQLTEAEKNRQAR-NSEASSGN---KH------SAPFH-- 273
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
R++V N+ +++ E+DL +FE +G L V L D ET +++G+ V F P A
Sbjct: 274 -----RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAR 327
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPK 416
+A + ++G GR + + G K
Sbjct: 328 EALEKMNGYDLGGRAIRVGLGNDK 351
Score = 131 (51.2 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 57/219 (26%), Positives = 93/219 (42%)
Query: 291 KYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTE 350
+Y + + D+ E K S++ S + ED + IFV+ L+ +
Sbjct: 128 RYYRPSGRSRRDERDEERRPRREREPRKRSDSRDRSPELNEDERDRRTIFVQQLAARLRT 187
Query: 351 DDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
+L FEK GP+ E + D+ + ++KG V F A Q L G LG + +
Sbjct: 188 KELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ-LTGQKLLG--IPI 244
Query: 411 IPGKPKENEGNVDGKVHCCISERKLDA-FNQVVEARSKRIILVKNLPYRTLPTDLKALFE 469
I + E E N + S K A F++ + V N+ + DL+++FE
Sbjct: 245 I-AQLTEAEKNRQARNSEASSGNKHSAPFHR---------LYVGNIHFSIDENDLQSVFE 294
Query: 470 PFGDLGRVLVPP--YGIT---GLVEFLQKNQAKAAFNSL 503
PFG+L V + G + G V+F NQA+ A +
Sbjct: 295 PFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKM 333
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 158 (60.7 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R + K P G+GFV + T E ++
Sbjct: 9 LFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRP-----RGFGFVTYTTVEEVDA 63
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V +I ++ +
Sbjct: 64 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGSIKEDTEEHHL 114
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
E F+ +G+++ + + GSG RGF FV F
Sbjct: 115 REYFEQYGKIEVIEIMTDR-GSGQKRGFVFVTF 146
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 166 (63.5 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F K GP SV V + KS G +GFV F E
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG------FGFVSFERHEDA 180
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 181 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 240 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 286
Score = 136 (52.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GYGFV F T+E+ +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAAER 89
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA R AK+ + + ++N +
Sbjct: 90 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-----AKEF-TNVYIKNFGEDMDDERL 143
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ELF FG V++ SG +GFGFV F +A++A+ + L G+++ +
Sbjct: 144 KELFGKFGPALSVKVMTDE--SGKSKGFGFVSFERHEDAQKAVDEM-NGKELNGKQIYVG 200
Query: 763 WAEE 766
A++
Sbjct: 201 RAQK 204
Score = 125 (49.1 bits), Expect = 0.00028, P = 0.00028
Identities = 70/287 (24%), Positives = 122/287 (42%)
Query: 252 SVRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------A 303
S+R + +G +I D+ NKAL S + G L+ +N +K G A
Sbjct: 28 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEA 86
Query: 304 AD---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
A+ + N + N + +KS+++ + E ++++N + ++ L +L
Sbjct: 87 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 146
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK 416
F K+GP V + D E+ K+KGF V+F E A +A ++G G+ +++ G+ +
Sbjct: 147 FGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQ 203
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLG 475
+ V+ + +RK + Q R + + L VKNL L+ F PFG +
Sbjct: 204 KK---VERQTEL---KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 257
Query: 476 RVLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 258 SAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
Score = 105 (42.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ L+F++ E S+ + F K G I+ V V + ++ + S G+GFV F +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR-----SRGFGFVTFENIDDAKD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEA 670
A+ + S+D QI + ++ ++ ++ +
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRS 90
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 154 (59.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 35 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 89
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 90 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 140
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 141 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 172
Score = 88 (36.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 103 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 161
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 162 GKKRGFAFVTF 172
Score = 75 (31.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 42 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 145 (56.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 55/208 (26%), Positives = 94/208 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ S GYGFV F T+E+ N+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-------EYGSRGYGFVHFETQEAANR 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + E E + V + T + ++N +
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRREREL----EYGAKVMEFTN--VYIKNFGEDMDDKRL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL----CQSTHLY-GR 757
+E+F AFG V++ M SG RGFGFV + EA++A+ + +Y GR
Sbjct: 208 KEIFSAFGNTLSVKV--MMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGR 265
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ + E E I++ R NRY G
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQG 293
Score = 125 (49.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/169 (21%), Positives = 72/169 (42%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + + ++ F G SV V +S G+GFV + E
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRS------RGFGFVNYGNHEEA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + ++ + + R+ + +E + ++ K + + G + V+N+
Sbjct: 245 QKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDG 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F +G + ++ M G +GFGFV F + EA +A+
Sbjct: 305 IDDDRLRKEFSPYGTITSTKV---MTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 111 (44.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 45/206 (21%), Positives = 89/206 (43%)
Query: 319 HWKSQ-EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
H+KS+ E +++ + E ++++N + + L ++F +G V + +D + ++
Sbjct: 172 HFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRS 230
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK-ENEGNVDGKVHCCISERKLD 436
+GF V + E A +A ++G GRM+++ + + E +G + K I + +++
Sbjct: 231 RGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQ-IKQERIN 289
Query: 437 AFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQ 492
+ V + VKNL L+ F P+G + V G G V F
Sbjct: 290 RYQGVN-------LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSS 342
Query: 493 KNQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + PLY+ A
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 90 (36.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+++ +L VTE L + F GP+ + + D T ++ G+A + F P A +A +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRII 450
+ V GR + ++ PG K GNV K + I + L D F+ + S +++
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131
Score = 67 (28.6 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +F++NL ++ L F +G + + D+ ++G+ V F E A +A Q
Sbjct: 99 GNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQ 156
Query: 397 HLDGTVFLGRMLHLIPGKPK-ENEGNVDGKV 426
++G + R + + K + E E KV
Sbjct: 157 TMNGMLLNDRKVFVGHFKSRRERELEYGAKV 187
Score = 61 (26.5 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGMAYIGFKDEKNCNKALNK 277
++ + +L V + L F P P+ S+R LG AYI F+ + +AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
N KG+ + I +D + SG + N + S++N
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDN 112
Score = 52 (23.4 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
+T+ L KF G + +++ + + +A+I + + A+ ALD N +
Sbjct: 22 VTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 88 IKV 90
I++
Sbjct: 82 IRI 84
Score = 43 (20.2 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 28/94 (29%), Positives = 41/94 (43%)
Query: 431 SERKLDAFN-QVVEARSKRIIL-----------VKNLPYRTLPT--DLKAL---FEPFGD 473
+ER LD N +V++ R RI+ V N+ + L D KAL F FGD
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGD 124
Query: 474 L--GRVLVPPYGITG--LVEFLQKNQAKAAFNSL 503
+ +V+ YG G V F + A A ++
Sbjct: 125 ILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTM 158
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 136 (52.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 41/169 (24%), Positives = 76/169 (44%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + + ++ F + G SV V D + G+ S G+GFV F
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMT--DER--GR--SRGFGFVNFVNHGDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
+A+ + L+ + + R+ + LE + ++ K + + G + V+N+
Sbjct: 245 RRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDS 304
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
++ + F +G + ++ M G RGFGFV F + EA +A+
Sbjct: 305 IDDEKLRKEFAPYGTITSAKV---MTDGGHSRGFGFVCFSSPEEATKAV 350
Score = 133 (51.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 46/184 (25%), Positives = 85/184 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKN++ + ++ F G I S V ++ G S GYGFV F T+E+ N+
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYGFVHFETQEAANR 153
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + E EA + + T + ++N ++
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREA----EMGAKAVEFTN--VYIKNFGEDIDSEKL 207
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
+ +F FG+ V + G RGFGFV F+ +A+RA+ + L GR L +
Sbjct: 208 KNIFTEFGKTLSVCVMTDERGRS--RGFGFVNFVNHGDARRAVTEM-NGKELNGRVLYVG 264
Query: 763 WAEE 766
A++
Sbjct: 265 RAQK 268
Score = 114 (45.2 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 64/286 (22%), Positives = 116/286 (40%)
Query: 253 VRTTFLGMAYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG--------AA 304
+R + +G +I DE NKAL S + G L+ +N +K G AA
Sbjct: 93 LRKSGVGNIFIKNMDESIDNKALYDTFSAF-GNILSCKVVCDENGSKGYGFVHFETQEAA 151
Query: 305 D---DNNNASMEN---IKAKHWKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLF 357
+ + N + N + H+KS+++ + E ++++N + + L +F
Sbjct: 152 NRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIF 211
Query: 358 EKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPK- 416
++G V + D E +++GF V F+ A +A ++G GR+L++ + +
Sbjct: 212 TEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRL 270
Query: 417 ENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGR 476
E +G + K I + ++ + V + VKNL L+ F P+G +
Sbjct: 271 ERQGELKRKFEQ-IKQERIQRYQGVN-------LYVKNLDDSIDDEKLRKEFAPYGTITS 322
Query: 477 VLVPPYGIT----GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V G G V F +A A + PLY+ A
Sbjct: 323 AKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Score = 78 (32.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F G + + + D T ++ G+A + F P A A +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V GR + ++ PG K GN+ K + I + L D F+ S +++
Sbjct: 73 NYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 57 (25.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG AYI F+ + AL+ N KG+ + I +D + SG + N + S++
Sbjct: 52 LGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESID 111
Query: 314 N 314
N
Sbjct: 112 N 112
Score = 55 (24.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 18/85 (21%), Positives = 36/85 (42%)
Query: 7 GPVVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGY 65
GP P + + DL +T+ L KF G + +++ + + +A+I +
Sbjct: 5 GPAYPLASLYVGDLHA-----DVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINF 59
Query: 66 HREDQAQAALDYFNNTYVFSSRIKV 90
+ A+ ALD N + I++
Sbjct: 60 QQPADAECALDTMNYEVIKGRPIRI 84
Score = 43 (20.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F Q A+ A +++ Y K P+ + W+
Sbjct: 57 INFQQPADAECALDTMNYEVIKGRPIRIMWS 87
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 127 (49.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 43/151 (28%), Positives = 80/151 (52%)
Query: 616 KDPKSP-GQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVK 674
K P++P G+ S GY F++F + E +AL +S ++ +IE R+ R LE +
Sbjct: 370 KVPQNPHGK--SKGYAFIEFASFEDAKEAL-----NSCNKMEIE-GRTIR-LELQGP--- 417
Query: 675 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734
R S N Q + V+ + + ++E F+ G ++ + + GS +GFGFV+
Sbjct: 418 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSS--KGFGFVD 473
Query: 735 FITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765
F ++ +AK A +A+ + + G ++ L+WA+
Sbjct: 474 FNSEEDAKTAKEAM-EDGEIDGNKVTLDWAK 503
Score = 93 (37.8 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + FE G + I+ D+ET +KGF V F E A A
Sbjct: 428 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKTAK 484
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK +G G+
Sbjct: 485 EAMEDGEIDGNKVTLDWAKPK-GKGGFGGR 513
Score = 92 (37.4 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ N + GA D + S+ K + QE + + + ES + + NLSY+ TE+
Sbjct: 300 AEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QERTGKNSTWSGESKTLVLSNLSYSATEET 358
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
L ++FEK A I K+KG+A + F E A +A + GR + L
Sbjct: 359 LQEVFEK----ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 412
Score = 84 (34.6 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F+ G + AR + G S G+GFV F + E
Sbjct: 430 TLFVKGLSEDTTEETLKESFE--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 481
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 482 TAKEAMEDGEIDGNKVTL 499
Score = 73 (30.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NLS+ +TED+L ++FE V + + + ++KG A + F A + +
Sbjct: 253 LLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 307
Query: 399 DGTVFLGRMLHL 410
G GR + L
Sbjct: 308 QGAEIDGRSVSL 319
Score = 73 (30.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEKNCNKALN-K 277
R T++ KNL + + +LK F+ + L S G+AYI FK E + K L K
Sbjct: 248 RAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 307
Query: 278 NKSFWKGKQLNIY 290
+ G+ +++Y
Sbjct: 308 QGAEIDGRSVSLY 320
Score = 57 (25.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ IT+++LK FE+ +++L + +G+ + A+I + E A+ L+ +
Sbjct: 260 FNITEDELKEVFED---AVEIRL-VSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 315
Query: 87 RIKV----EKCSNLGDTTKPKSWS 106
+ + EK T K +WS
Sbjct: 316 SVSLYYTGEKGQRQERTGKNSTWS 339
Score = 55 (24.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK + D+ G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 180 ELKVAISDLFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 238
Score = 54 (24.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ-KNQAKAAFN 501
+ R+ R +L KNL + +LK +FE ++ LV G + + +++ K++A A N
Sbjct: 246 KVRAARTLLAKNLSFNITEDELKEVFEDAVEIR--LVSQDGRSKGIAYIEFKSEADAEKN 303
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 123 (48.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 42/150 (28%), Positives = 78/150 (52%)
Query: 616 KDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR 675
K P++ Q S GY F++F + E +AL +S ++ +IE R+ R LE + R
Sbjct: 513 KVPQNQ-QGKSKGYAFIEFASFEDAKEAL-----NSCNKMEIE-GRTIR-LELQGP---R 561
Query: 676 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
S N Q + V+ + + ++E F+ G ++ + + GS +GFGFV+F
Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSS--KGFGFVDF 617
Query: 736 ITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765
++ +AK A +A+ + + G ++ L+WA+
Sbjct: 618 NSEEDAKAAKEAM-EDGEIDGNKVTLDWAK 646
Score = 97 (39.2 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + FE G + I+ D+ET +KGF V F E A A
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 628 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 656
Score = 96 (38.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ N + GA D + S+ K + QE + + + ES + + NLSY+ TE+
Sbjct: 443 AEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QERTGKNSTWSGESKTLVLSNLSYSATEET 501
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
L ++FEK A I + K+KG+A + F E A +A + GR + L
Sbjct: 502 LQEVFEK----ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 555
Score = 84 (34.6 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F+ G + AR + G S G+GFV F + E
Sbjct: 573 TLFVKGLSEDTTEETLKESFE--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 624
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 625 AAKEAMEDGEIDGNKVTL 642
Score = 75 (31.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NLS+ +TED+L ++FE E+ L + K+KG A + F A + +
Sbjct: 396 LLAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEK 450
Query: 399 DGTVFLGRMLHL 410
G GR + L
Sbjct: 451 QGAEIDGRSVSL 462
Score = 73 (30.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEKNCNKALN-K 277
R T++ KNL + + +LK F+ + L S G+AYI FK E + K L K
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEK 450
Query: 278 NKSFWKGKQLNIY 290
+ G+ +++Y
Sbjct: 451 QGAEIDGRSVSLY 463
Score = 61 (26.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK E D+ + G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 323 ELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 381
Score = 59 (25.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ IT+++LK FE+ +++L + +GK + A+I + E A+ L+ +
Sbjct: 403 FNITEDELKEVFED---ALEIRL-VSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 458
Query: 87 RIKV----EKCSNLGDTTKPKSWS 106
+ + EK T K +WS
Sbjct: 459 SVSLYYTGEKGQRQERTGKNSTWS 482
Score = 53 (23.7 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ-KNQAKAAFN 501
+ R+ R +L KNL + +LK +FE ++ LV G + + +++ K++A A N
Sbjct: 389 KVRAARTLLAKNLSFNITEDELKEVFEDALEIR--LVSQDGKSKGIAYIEFKSEADAEKN 446
Score = 40 (19.1 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 107 KYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKND 144
K AP K N+A + D E +D + ++ + D
Sbjct: 224 KKAPAKVVPVKAKNVAEEDDDDEEEDEDEEEDEEEEED 261
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+E G++FV L++ + L + P++EV++ D+ET +++GF +TF PEHA+
Sbjct: 3 SEEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASN 62
Query: 394 AYQHLDGTVFLGRMLHL 410
+ ++G GR +H+
Sbjct: 63 VMRAMNGESLDGRQIHV 79
Score = 109 (43.4 bits), Expect = 0.00046, P = 0.00046
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ LNFNS + ++ H PI+ V + + ++ + S G+GF+ F E +
Sbjct: 8 LFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQR-----SRGFGFITFTNPEHASN 62
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLE 667
++ + SLD QI + + ++ +
Sbjct: 63 VMRAMNGESLDGRQIHVDHAGKSAQ 87
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 127 (49.8 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 43/151 (28%), Positives = 80/151 (52%)
Query: 616 KDPKSP-GQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVK 674
K P++P G+ S GY F++F + E +AL +S ++ +IE R+ R LE +
Sbjct: 516 KVPQNPHGK--SKGYAFIEFASFEDAKEAL-----NSCNKMEIE-GRTIR-LELQGP--- 563
Query: 675 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734
R S N Q + V+ + + ++E F+ G ++ + + GS +GFGFV+
Sbjct: 564 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSS--KGFGFVD 619
Query: 735 FITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765
F ++ +AK A +A+ + + G ++ L+WA+
Sbjct: 620 FNSEEDAKAAKEAM-EDGEIDGNKVTLDWAK 649
Score = 97 (39.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + FE G + I+ D+ET +KGF V F E A A
Sbjct: 574 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 630
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 631 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 659
Score = 92 (37.4 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ N + GA D + S+ K + QE + + + ES + + NLSY+ TE+
Sbjct: 446 AEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QERTGKNSTWSGESKTLVLSNLSYSATEET 504
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
L ++FEK A I K+KG+A + F E A +A + GR + L
Sbjct: 505 LQEVFEK----ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 558
Score = 84 (34.6 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F+ G + AR + G S G+GFV F + E
Sbjct: 576 TLFVKGLSEDTTEETLKESFE--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 627
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 628 AAKEAMEDGEIDGNKVTL 645
Score = 73 (30.8 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NLS+ +TED+L ++FE V + + + ++KG A + F A + +
Sbjct: 399 LLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 453
Query: 399 DGTVFLGRMLHL 410
G GR + L
Sbjct: 454 QGAEIDGRSVSL 465
Score = 73 (30.8 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEKNCNKALN-K 277
R T++ KNL + + +LK F+ + L S G+AYI FK E + K L K
Sbjct: 394 RAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 453
Query: 278 NKSFWKGKQLNIY 290
+ G+ +++Y
Sbjct: 454 QGAEIDGRSVSLY 466
Score = 58 (25.5 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK E D+ G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 326 ELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 384
Score = 57 (25.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ IT+++LK FE+ +++L + +G+ + A+I + E A+ L+ +
Sbjct: 406 FNITEDELKEVFED---AVEIRL-VSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 461
Query: 87 RIKV----EKCSNLGDTTKPKSWS 106
+ + EK T K +WS
Sbjct: 462 SVSLYYTGEKGQRQERTGKNSTWS 485
Score = 54 (24.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ-KNQAKAAFN 501
+ R+ R +L KNL + +LK +FE ++ LV G + + +++ K++A A N
Sbjct: 392 KVRAARTLLAKNLSFNITEDELKEVFEDAVEIR--LVSQDGRSKGIAYIEFKSEADAEKN 449
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 127 (49.8 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 43/151 (28%), Positives = 80/151 (52%)
Query: 616 KDPKSP-GQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVK 674
K P++P G+ S GY F++F + E +AL +S ++ +IE R+ R LE +
Sbjct: 517 KVPQNPHGK--SKGYAFIEFASFEDAKEAL-----NSCNKMEIE-GRTIR-LELQGP--- 564
Query: 675 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734
R S N Q + V+ + + ++E F+ G ++ + + GS +GFGFV+
Sbjct: 565 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSS--KGFGFVD 620
Query: 735 FITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765
F ++ +AK A +A+ + + G ++ L+WA+
Sbjct: 621 FNSEEDAKAAKEAM-EDGEIDGNKVTLDWAK 650
Score = 97 (39.2 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV+ LS TE+ L + FE G + I+ D+ET +KGF V F E A A
Sbjct: 575 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAK 631
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ ++ G + L KPK EG G+
Sbjct: 632 EAMEDGEIDGNKVTLDWAKPK-GEGGFGGR 660
Score = 92 (37.4 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ N + GA D + S+ K + QE + + + ES + + NLSY+ TE+
Sbjct: 447 AEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QERTGKNSTWSGESKTLVLSNLSYSATEET 505
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL 410
L ++FEK A I K+KG+A + F E A +A + GR + L
Sbjct: 506 LQEVFEK----ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 559
Score = 84 (34.6 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
TL++K L+ ++TE++++ F+ G + AR + G S G+GFV F + E
Sbjct: 577 TLFVKGLSEDTTEETLKESFE--GSVR----ARIVTDRETGS--SKGFGFVDFNSEEDAK 628
Query: 642 QALKVLQNSSLDEHQIEL 659
A + +++ +D +++ L
Sbjct: 629 AAKEAMEDGEIDGNKVTL 646
Score = 73 (30.8 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +NLS+ +TED+L ++FE V + + + ++KG A + F A + +
Sbjct: 400 LLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 454
Query: 399 DGTVFLGRMLHL 410
G GR + L
Sbjct: 455 QGAEIDGRSVSL 466
Score = 73 (30.8 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRTTFLGMAYIGFKDEKNCNKALN-K 277
R T++ KNL + + +LK F+ + L S G+AYI FK E + K L K
Sbjct: 395 RAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEK 454
Query: 278 NKSFWKGKQLNIY 290
+ G+ +++Y
Sbjct: 455 QGAEIDGRSVSLY 467
Score = 58 (25.5 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 33 QLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRIKVEK 92
+LK E D+ G R+F ++ + + + AL+ VF + IK+EK
Sbjct: 327 ELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 385
Score = 57 (25.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ IT+++LK FE+ +++L + +G+ + A+I + E A+ L+ +
Sbjct: 407 FNITEDELKEVFED---AVEIRL-VSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 462
Query: 87 RIKV----EKCSNLGDTTKPKSWS 106
+ + EK T K +WS
Sbjct: 463 SVSLYYTGEKGQRQERTGKNSTWS 486
Score = 54 (24.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQ-KNQAKAAFN 501
+ R+ R +L KNL + +LK +FE ++ LV G + + +++ K++A A N
Sbjct: 393 KVRAARTLLAKNLSFNITEDELKEVFEDAVEIR--LVSQDGRSKGIAYIEFKSEADAEKN 450
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 130 (50.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 35/145 (24%), Positives = 71/145 (48%)
Query: 259 GMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKA 317
G ++ FKD + A+N N + + K L + + D ++ + +++NN+ N
Sbjct: 141 GFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNN 200
Query: 318 KHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
+ S ++ ++ S +F+R L ++ L++LF YG + E L ID T+ +
Sbjct: 201 NN-NSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNAS 259
Query: 378 KGFALVTFLMPEHATQAYQHLDGTV 402
+G LV ++ + A A + L+G +
Sbjct: 260 RGQGLVRYIDTQSAINAVKSLNGFI 284
Score = 104 (41.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 44/196 (22%), Positives = 75/196 (38%)
Query: 324 EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALV 383
+ S + + A SG +F+ L T T D L +F +G + + +D T ++GF V
Sbjct: 86 QTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFV 145
Query: 384 TFLMPEHATQAYQHLDGT-----VFLGRMLHLIPGKPKENEGNV----DGKVHCCISERK 434
F A A ++G L R + P N N D + +
Sbjct: 146 KFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSN 205
Query: 435 LDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVP-----PYGITGL 487
+ N + E + + ++ LP L LF +G++ ++L+ G GL
Sbjct: 206 NNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRG-QGL 264
Query: 488 VEFLQKNQAKAAFNSL 503
V ++ A A SL
Sbjct: 265 VRYIDTQSAINAVKSL 280
Score = 79 (32.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ 633
T LY+ NL ++ + + R F CG IASV + R + + + GYGFV+
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQ-----VCRGYGFVR 429
Score = 64 (27.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + V N+P A S + LF G + V++ + + + RG+GFV ++ ++ A+
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQT-TQVCRGYGFVRMVSLADSYSAI 440
Query: 746 KAL 748
++
Sbjct: 441 NSI 443
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 139 (54.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 310 ASMENIKAKHWKS-----QEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLA 364
A++ I +H KS S F + + ++F+ LS+ TE L++ F K G +
Sbjct: 2 AALARIGGRHLKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVV 61
Query: 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDG 424
E + +D+ +D++KGF VTF + A +A +G GR + + K K++ G G
Sbjct: 62 EAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGG 121
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 132 (51.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 42/173 (24%), Positives = 76/173 (43%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ F + G + SV V + KS G +GFV F E
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKG------FGFVSFERHEDA 244
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK-----ILVRNIPF 695
+A+ + L+ I + + + ++ +KRK V + G + + V+N+
Sbjct: 245 QKAVDEMNGKELNGKHIYVGPAQKKVDRHIE-LKRKFEQVTQDRGIRYQGINLYVKNLDD 303
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+++ F FG + ++ M G +GFGFV F + EA +A+ +
Sbjct: 304 GIDDERLQKEFSPFGTITSTKV---MTEGGRSKGFGFVCFSSPEEATKAVSEM 353
Score = 119 (46.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 46/197 (23%), Positives = 93/197 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNLN ++ F G I S V ++ G S G+GFV F T E+ +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGHGFVHFETEEAAER 153
Query: 643 ALKVLQNSSLDEHQIELK--RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
A++ + L++ ++ + +S + E+E T ++ +NV ++N +
Sbjct: 154 AIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNV--------YIKNFGDRMDDK 205
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
+ LF FG++ V++ G +GFGFV F +A++A+ + L G+ +
Sbjct: 206 TLNGLFGRFGQVLSVKVMTDEGGKS--KGFGFVSFERHEDAQKAVDEM-NGKELNGKHIY 262
Query: 761 LEWAEE-ADNVEDIRKR 776
+ A++ D +++++
Sbjct: 263 VGPAQKKVDRHIELKRK 279
Score = 115 (45.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 52/205 (25%), Positives = 87/205 (42%)
Query: 320 WKSQED-SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTK 378
+KS+++ + E ++++N + + L LF ++G + V + D E K+K
Sbjct: 173 FKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSK 231
Query: 379 GFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAF 438
GF V+F E A +A ++G G+ +++ P + K VD + +RK +
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK-----VDRHIEL---KRKFEQV 283
Query: 439 NQVVEARSKRIIL-VKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT----GLVEFLQK 493
Q R + I L VKNL L+ F PFG + V G G V F
Sbjct: 284 TQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSP 343
Query: 494 NQAKAAFNSLAYTKFKEVPLYLEWA 518
+A A + + PLY+ A
Sbjct: 344 EEATKAVSEMNGRIVATKPLYVALA 368
Score = 100 (40.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 318 KHWKSQEDSVQFAED--IAESG-RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
+H + + Q +D I G ++V+NL + ++ L K F +G + + E
Sbjct: 272 RHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITST--KVMTEG 329
Query: 375 DKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKE 417
++KGF V F PE AT+A ++G + + L++ + KE
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKE 372
Score = 80 (33.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 399 DGTVFLGRMLHLI-----PGKPKENEGNVDGK-VHCCISERKL-DAFNQVVEARSKRIIL 451
+ V G+ + ++ P + GNV K ++ I + L D F+ S +++
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVC 132
Query: 452 VKN 454
+N
Sbjct: 133 DEN 135
Score = 75 (31.5 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G +F++NL+ T+ L F +G + + D+ K GF V F E A +A +
Sbjct: 99 GNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGF--VHFETEEAAERAIE 156
Query: 397 HLDGTVFLGRMLHLIPGKP-KENEGNV 422
++G + R + + K KE E +
Sbjct: 157 KMNGMLLNDRKVFVGQFKSRKEREAEL 183
Score = 70 (29.7 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
++ + L F G V V++ GK + F F+ + R + AQ A+D N +
Sbjct: 201 RMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKH 260
Query: 88 IKV 90
I V
Sbjct: 261 IYV 263
Score = 58 (25.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 258 LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAAD---DNNNASME 313
LG A + F+ + +AL+ N KGK + I +D S + SG + N N +++
Sbjct: 52 LGYASVNFEQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTID 111
Query: 314 N 314
N
Sbjct: 112 N 112
Score = 45 (20.9 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVL 478
+ +KNL +T+ D KAL++ F G +L
Sbjct: 101 VFIKNLN-KTI--DNKALYDTFSAFGNIL 126
Score = 38 (18.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 488 VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
V F Q A+ A +++ + K P+ + W+
Sbjct: 57 VNFEQPADAERALDTMNFDVIKGKPVRIMWS 87
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 124 (48.7 bits), Expect = 0.00025, P = 0.00025
Identities = 48/178 (26%), Positives = 82/178 (46%)
Query: 220 HKRQYHTIVVKNLPAGVKKKDLKAYFKP---LPLASVRT----TFLGMAYIGFKDEKNCN 272
H R+ H ++VKNLPA V + LK FK + A V G + F D K+ +
Sbjct: 256 HNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLH 315
Query: 273 KALNKNKSFW-KGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAE 331
+A+ K + +G L++ SK++ +S D+ + M++ E++ +F E
Sbjct: 316 RAIEKYNGYSIEGNVLDVK--SKESVHNHSDG--DDVDIPMDDSPVN-----EEARKFTE 366
Query: 332 DIAESGR----IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
++ G I+ NL ++ + DL LFE G + L D + T G A+V +
Sbjct: 367 NVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPT-GIAVVEY 423
Score = 111 (44.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 39/140 (27%), Positives = 60/140 (42%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S IFV NL+Y T +DLT+ F + G + I +G V F + +A
Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRA--DIITSRGHHRGMGTVEFTNSDDVDRAI 217
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERK-LDAFNQVVEARSKRIILVKN 454
+ DG F+ R + + P + I ERK LD ++ R ++VKN
Sbjct: 218 RQYDGAFFMDRKIFVRQDNPPPSNN---------IKERKALDR-GELRHNRKTHEVIVKN 267
Query: 455 LPYRTLPTDLKALFEPFGDL 474
LP LK +F+ G++
Sbjct: 268 LPASVNWQALKDIFKECGNV 287
Score = 98 (39.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 40/188 (21%), Positives = 84/188 (44%)
Query: 585 IKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQAL 644
+KNL + +++ FK+CG +A D + G +S G G V FY + L++A+
Sbjct: 265 VKNLPASVNWQALKDIFKECGNVAHA------DVELDGDGVSTGSGTVSFYDIKDLHRAI 318
Query: 645 KVLQNSSLDEHQIELKRS---NRNLESEATTVKRKSSNVAKQT----------GSK---I 688
+ S++ + +++K + + + + + S V ++ G + I
Sbjct: 319 EKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLI 378
Query: 689 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
N+PF +S++ +LF+ G++ L + G G VE+ ++A ++ L
Sbjct: 379 YCSNLPFSTAKSDLYDLFETIGKVNNAEL--RYDSKGAPTGIAVVEYDNVDDADVCIERL 436
Query: 749 CQSTHLYG 756
+ + YG
Sbjct: 437 --NNYNYG 442
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 110 (43.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L ++N+++ STEDS+R HF + G + V + ++ D K +G FVQ+ E++NQ
Sbjct: 50 LIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKL------VGCAFVQY---ETINQ 100
Query: 643 ALKVLQNSS 651
A K + NS+
Sbjct: 101 ATKAILNSN 109
Score = 103 (41.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 30/102 (29%), Positives = 55/102 (53%)
Query: 651 SLDEHQIELKRSNRN-LES--EATTVKRKS--SNVAKQTGSKILVRNIPFQAKQSEVEEL 705
S DE E + N++ L+S + VKR+ SN Q G + ++N+PF A+ +++ +
Sbjct: 191 SEDEENDEDHKENKDELKSKLDIKNVKREKQISNDV-QEGCTVFIKNVPFDAEDADLRKA 249
Query: 706 FKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
+ FG + + + ++ V SG +G FV+F K A ++A
Sbjct: 250 CRKFGLVSYAIINRQAV-SGHSKGTAFVKFKAKESADLCLQA 290
Score = 99 (39.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 286 QLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLS 345
+L K KD++A+ + + K +++ Q + R+ VRN+S
Sbjct: 2 ELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQ-----KKRARLIVRNIS 56
Query: 346 YTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLG 405
Y TED L + F ++G L +V + + + K G A V + AT+A + +G LG
Sbjct: 57 YKSTEDSLREHFGQWGTLEDVHI-LKRGDGKLVGCAFVQYETINQATKAILNSNGKELLG 115
Query: 406 R 406
R
Sbjct: 116 R 116
Score = 97 (39.2 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 305 DDNNNASMENIKAK-HWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL 363
D+++ + + +K+K K+ + Q + D+ E +F++N+ + + DL K K+G +
Sbjct: 197 DEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLV 256
Query: 364 AEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVF 403
+ I+ + +KG A V F E A Q GT F
Sbjct: 257 SYAIINRQAVSGHSKGTAFVKFKAKESADLCLQA--GTEF 294
Score = 88 (36.0 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 33/127 (25%), Positives = 57/127 (44%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YK T++ L+ F + GT+ DV + +GK AF+ Y +QA A+ N +
Sbjct: 57 YKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGR 116
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLHNIAPKQDLKPE----HTKDSKPGKKSK 142
++ V+ LG K + SK D +K + K++ E D++ GK+ +
Sbjct: 117 KVFVDWA--LG---KDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEVGKEDE 171
Query: 143 NDPTFSD 149
+ SD
Sbjct: 172 SSGEDSD 178
Score = 72 (30.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++IKN+ F++ + +R+ +K G ++ + R+ G S G FV+F +ES +
Sbjct: 231 TVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQA---VSGH--SKGTAFVKFKAKESAD 285
Query: 642 QALKV-----LQNSSLDEH------QIELKRSNRNLESEA 670
L+ L + LD H +++ K+S N + +A
Sbjct: 286 LCLQAGTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDA 325
Score = 69 (29.3 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 725 GLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR--RLVLEWAEEADNVEDIR-KRTNR 779
G +GFGF+ F T A A++ L + +++G R ++ ++ E V I+ KRT R
Sbjct: 424 GKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTER 481
Score = 61 (26.5 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 416 KENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLG 475
KEN+ + K+ +R+ N V E + + +KN+P+ DL+ FG +
Sbjct: 201 KENKDELKSKLDIKNVKREKQISNDVQEGCT---VFIKNVPFDAEDADLRKACRKFGLVS 257
Query: 476 RVLVPPYGITG------LVEFLQKNQAKAAFNSLAYTKFK 509
++ ++G V+F K A A T+FK
Sbjct: 258 YAIINRQAVSGHSKGTAFVKFKAKESADLCLQ--AGTEFK 295
Score = 57 (25.1 bits), Expect = 8.2e-07, Sum P(3) = 8.2e-07
Identities = 39/136 (28%), Positives = 56/136 (41%)
Query: 615 KKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEAT-TV 673
K P+ P Q S G+GF+ F T + AL+ L N+ ++E A +
Sbjct: 416 KVTPEHP-QGKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKI 474
Query: 674 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELF--KAFGELKFVRLPKKMVGSGLHRGFG 731
K K + +KQ N +Q KQ E +E K G+ +P+ S L +
Sbjct: 475 KEKRTERSKQN-------NPTYQNKQQERKERRQQKRNGQETKTPVPQADNKSKLQK--- 524
Query: 732 FVEFITKNEAKRAMKA 747
I K EA RA KA
Sbjct: 525 ---HIKKLEASRAAKA 537
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ G++ V LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 395 YQHLDGTVFLGRMLHLIP-GKPKEN 418
++G GR + + GK EN
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSEN 88
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ G++ V LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 395 YQHLDGTVFLGRMLHLIP-GKPKEN 418
++G GR + + GK EN
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSEN 88
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 124 (48.7 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 38/134 (28%), Positives = 67/134 (50%)
Query: 292 YSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESG----RIFVRNLSYT 347
+S+ + + SG + N ++ N + ++ S F E + SG ++FV NL Y
Sbjct: 184 FSRRDDDRLSGRNNFNMMSNDYN-NSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYK 242
Query: 348 VTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRM 407
V L ++F+ G + V L +DKE + ++GFA++ + P A QA LD + R
Sbjct: 243 VDNKKLKQVFKLAGKVQSVDLSLDKEGN-SRGFAVIEYDHPVEAVQAISMLDRQMLFDRR 301
Query: 408 LHL-IPGKPKENEG 420
+ + + P +NEG
Sbjct: 302 MTVRLDRIPDKNEG 315
Score = 92 (37.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 32/126 (25%), Positives = 60/126 (47%)
Query: 662 SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM 721
SN NL + + +S ++ +K+ V N+ ++ +++++FK G+++ V L
Sbjct: 209 SNYNLYGLSASFL-ESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDK 267
Query: 722 VGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNRYF 781
G+ RGF +E+ EA +A+ L + L+ RR+ + D E I K
Sbjct: 268 EGNS--RGFAVIEYDHPVEAVQAISMLDRQM-LFDRRMTVRLDRIPDKNEGI-KLPEGLG 323
Query: 782 GTAVGL 787
G +GL
Sbjct: 324 GVGIGL 329
Score = 79 (32.9 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKY-GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
R+++ N+ Y DL LF + G + V L D E+ K +G +V F PE+ +A +
Sbjct: 58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKDPENVQKALE 116
Query: 397 HLDGTVFLGRMLHLIP--GKPKENEGNV--DG 424
++ GR L + G+ ++ G + DG
Sbjct: 117 KMNRYEVNGRELVVKEDHGEQRDQYGRIVRDG 148
Score = 68 (29.0 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
A + I+++N+P + + F+ G++KF + G+ + G V F + +
Sbjct: 558 ASRKSDTIIIKNVPITCTWQTLRDKFREIGDVKFAEIR----GNDV----GVVRFFKERD 609
Query: 741 AKRAMKALCQSTHLYGRRL 759
A+ A+ AL + L GR +
Sbjct: 610 AELAI-ALMDGSRLDGRNI 627
Score = 62 (26.9 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPL--PLASVRTTF------LGMAYIGFKDEKNCN 272
+R+ + + N+P + +DLK F+ + + V+ F G + FKD +N
Sbjct: 53 ERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQ 112
Query: 273 KALNK-NKSFWKGKQLNIYKYSKDNSAKYSGAADD 306
KAL K N+ G++L + + + +Y D
Sbjct: 113 KALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRD 147
Score = 56 (24.8 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 430 ISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVE 489
+ + + N V +R I++KN+P L+ F GD+ + + G+V
Sbjct: 545 VGNSNVGSANAVGASRKSDTIIIKNVPITCTWQTLRDKFREIGDVKFAEIRGNDV-GVVR 603
Query: 490 FLQKNQAKAA 499
F ++ A+ A
Sbjct: 604 FFKERDAELA 613
Score = 54 (24.1 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 27 YKITQEQLKAKFEE-KGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
Y + LK F G++ VQL + GK R + + + Q AL+ N Y +
Sbjct: 66 YDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNR-YEVN 124
Query: 86 SRIKVEK 92
R V K
Sbjct: 125 GRELVVK 131
Score = 51 (23.0 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ IKN+ T ++R F++ G + + R D G V+F+
Sbjct: 564 TIIIKNVPITCTWQTLRDKFREIGDVKFAEI-RGND-----------VGVVRFFKERDAE 611
Query: 642 QALKVLQNSSLDEHQIEL 659
A+ ++ S LD I++
Sbjct: 612 LAIALMDGSRLDGRNIKV 629
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 154 (59.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 169 (64.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++S++ F + G SV V R DP G+ S G+GFV + E
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR--DPS--GK--SKGFGFVSYEKHEDA 284
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 285 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 344
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 345 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 399
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 400 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 429
Score = 132 (51.5 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 53/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ ++
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAADK 193
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 194 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDESL 247
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
+ELF FG+ V++ + SG +GFGFV + +A +A+ K + GR
Sbjct: 248 KELFSQFGKTLSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGR 305
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 306 AQKKVERQAELKRKFEQLKQERISRYQG 333
Score = 41 (19.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 150 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKV 208
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 209 FVGRFKSRK 217
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 283 KGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
KGK + I +D S + SG + N + S++N
Sbjct: 118 KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 152
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 156 (60.0 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 45/161 (27%), Positives = 81/161 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEKVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 743
+ F+ +G+++ + + GSG RGF FV F N +
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTFDDHNSVDK 161
Score = 88 (36.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 74 (31.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHL 410
A ++G GR + +
Sbjct: 63 AMMAMNGKSVDGRQIRV 79
Score = 100 (40.3 bits), Expect = 0.00033, P = 0.00033
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ L+F++ E S+ + F K G I+ V V + ++ + S G+GFV F +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR-----SRGFGFVTFENIDDAKD 62
Query: 643 ALKVLQNSSLDEHQIELKRSNR 664
A+ + S+D QI + + R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQPLR 84
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP----GKPKEN 418
A ++G V + R+L P G P N
Sbjct: 63 AMMAMNGKVRI-RVLSRSPVSRMGHPPAN 90
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+I+V +LSY VT D+L F +YG + E L +D+ET ++KGFA +T+ + A +A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 398 LDGTVFLGRMLHLIPGKPKENEGN 421
+G GR + + +EN G+
Sbjct: 79 ANGIDLQGRKIRV--NIARENTGD 100
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+I+V +LSY VT D+L F +YG + E L +D+ET ++KGFA +T+ + A +A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 398 LDGTVFLGRMLHLIPGKPKENEGN 421
+G GR + + +EN G+
Sbjct: 79 ANGIDLQGRKIRV--NIARENTGD 100
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 129 (50.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
I E+ RI++ ++++ VTED + +F ++G + L + +T K KGF V F + + A
Sbjct: 765 INEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSAD 824
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKENEGN 421
A ++G LGR + + G+P ++ N
Sbjct: 825 DAIATMNGFELLGRSIKV--GRPTKSSNN 851
Score = 96 (38.9 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ RI+V +L +++TED + F +G + + L D + K+KG+A + + E A +A
Sbjct: 586 DQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKA 644
Query: 395 YQHLDGTVFLGRML 408
Q + V GR +
Sbjct: 645 LQSMTNYVMCGRAI 658
Score = 93 (37.8 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+YI ++N+N TED +R F + G + S + + D G+ G+GFV F ++S +
Sbjct: 771 IYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADT---GKH--KGFGFVDFELKKSADD 825
Query: 643 ALKVLQNSSLDEHQIEL----KRSNRNLESEATTVKRKSSN 679
A+ + L I++ K SN N + + ++N
Sbjct: 826 AIATMNGFELLGRSIKVGRPTKSSNNNNNNNNSINNNNNTN 866
Score = 92 (37.4 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+Y+ +L+F+ TED IR F G I S+ + KD + G+ S GY F+++ +ES +
Sbjct: 590 IYVGSLHFSLTEDVIRATFSVFGNIKSLALG--KD--ASGK--SKGYAFIEYDNQESAAK 643
Query: 643 ALKVLQNSSLDEHQIELKR 661
AL+ + N + I++ R
Sbjct: 644 ALQSMTNYVMCGRAIKVAR 662
Score = 91 (37.1 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 648 QNSSLDEHQIELKRSNRNLESEATTVKRKSSN---VAKQTGSKILVRNIPFQAKQSEVEE 704
Q +H I L +S+ + V + + + V S+I + +I + + +V
Sbjct: 729 QQQQQQQHPI-LSQSHHPPQHPTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRS 787
Query: 705 LFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
+F FG + L + +G H+GFGFV+F K A A+ A L GR +
Sbjct: 788 IFSQFGRVISCFLMQN-ADTGKHKGFGFVDFELKKSADDAI-ATMNGFELLGRSI 840
Score = 86 (35.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ +T++ ++A F G + + L GK + +AFI Y ++ A AL N YV
Sbjct: 597 FSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKALQSMTN-YVMCG 655
Query: 87 R-IKVEK 92
R IKV +
Sbjct: 656 RAIKVAR 662
Score = 45 (20.9 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 13/60 (21%), Positives = 33/60 (55%)
Query: 266 KDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQED 325
KD+K+ + +K++S + + + S ++S+ S ++ D++ + + +KH KS +
Sbjct: 198 KDKKSERHSRSKSRS--RSRSAS----SSESSSSSSSSSSDSSRSRSRSKNSKHKKSSSN 251
Score = 42 (19.8 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 23/127 (18%), Positives = 40/127 (31%)
Query: 96 LGDTTKP-KSWSKYAPDSSAYQKLHNIAPKQDLKPEHTKDSKPGKKSKNDPTFSDFLQLH 154
L TTK KS K SS+ H+ + + + D K KKS P+ + H
Sbjct: 152 LTQTTKSTKSSKKSISSSSSSSSSHSRSRSR------SSDGKHSKKSSKRPSKDKKSERH 205
Query: 155 GKDVSKLLPLXXXXXXXXXXXXXXXXXXQIAHADISDMEYLKLKTKSKDTAPSDPSVPPV 214
+ S+ + + + ++ K + + S P
Sbjct: 206 SRSKSRSRSRSASSSESSSSSSSSSSDSSRSRSRSKNSKHKKSSSNGNNNTNQTTSAIPT 265
Query: 215 SKAPVHK 221
+ HK
Sbjct: 266 TST-THK 271
Score = 39 (18.8 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 293 SKDNSAKYSGAADDNNNASMEN 314
SK K S ++NNN+S N
Sbjct: 281 SKSRDRKKSHYNNNNNNSSSSN 302
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 155 (59.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNTTPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 138 (53.6 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 39/153 (25%), Positives = 69/153 (45%)
Query: 295 DNSAKYSGAADDNNNASMENIKAKH-WKSQEDSVQFAEDI-AESGRIFVRNLSYTVTEDD 352
DN+ + +DN N + + +S ED+ + E G++F+ L++ T+D
Sbjct: 119 DNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDS 178
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ---HLDGTVFLGRMLH 409
L FE++G + + + D T +++GF +TF P+ + HLDG + +
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK--R 236
Query: 410 LIPGKPKENEGN--VDGKVHCCISERKLDAFNQ 440
IP + +E V G C E + FNQ
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQ 269
Score = 67 (28.6 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++ + + TE+ R F + G + T+ KD P G+GFV Y ES +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP-----RGFGFVT-YENESAVE 302
Query: 643 ALKVLQNSSLDEHQIELKRS 662
A ++ +E+KR+
Sbjct: 303 ATMSQPYITIHGKPVEVKRA 322
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 154 (59.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 154 (59.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 154 (59.3 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 103 (41.3 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 24/94 (25%), Positives = 50/94 (53%)
Query: 297 SAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
S+KY ++ + N S ++++ + + ++++ E + F+ + +T +T+
Sbjct: 80 SSKYEKSSCGSKNKSGDSLRIN------ECLNNSKNLNEPFKFFIGGIPQYITSKHITEY 133
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
FE+YG + V++ D ET + +GFA VT M H
Sbjct: 134 FEQYGTVQHVVIAQDHETKRNRGFAFVT--MASH 165
Score = 100 (40.3 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 661 RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK 720
R L + V+ +++ KI V + + + +E F FGE+ V++
Sbjct: 173 RDTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIV-- 230
Query: 721 MVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-LYGRRLVLEWAEEADNVEDIRKRTNR 779
+ SG R FGFV F +N + +K H +Y + + + AE I++ N+
Sbjct: 231 LDSSGRSRCFGFVVFSNENSVAKVLK---HKRHKIYDKMVEVRKAEPKKPKMSIKRSNNK 287
Query: 780 YF 781
F
Sbjct: 288 NF 289
Score = 69 (29.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++ LN+ T+D++ +F G I V + S G+ S +GFV F S+ +
Sbjct: 200 IFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD----SSGR--SRCFGFVVFSNENSVAK 253
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697
LK ++ D+ +E++++ + ++KR S+N + SK +IPF A
Sbjct: 254 VLKHKRHKIYDK-MVEVRKAEP--KKPKMSIKR-SNN---KNFSKF-PPHIPFMA 300
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 103 (41.3 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 24/94 (25%), Positives = 50/94 (53%)
Query: 297 SAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKL 356
S+KY ++ + N S ++++ + + ++++ E + F+ + +T +T+
Sbjct: 80 SSKYEKSSCGSKNKSGDSLRIN------ECLNNSKNLNEPFKFFIGGIPQYITSKHITEY 133
Query: 357 FEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
FE+YG + V++ D ET + +GFA VT M H
Sbjct: 134 FEQYGTVQHVVIAQDHETKRNRGFAFVT--MASH 165
Score = 100 (40.3 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 661 RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK 720
R L + V+ +++ KI V + + + +E F FGE+ V++
Sbjct: 173 RDTHELNGKRVDVREENNTTPSDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIV-- 230
Query: 721 MVGSGLHRGFGFVEFITKNEAKRAMKALCQSTH-LYGRRLVLEWAEEADNVEDIRKRTNR 779
+ SG R FGFV F +N + +K H +Y + + + AE I++ N+
Sbjct: 231 LDSSGRSRCFGFVVFSNENSVAKVLK---HKRHKIYDKMVEVRKAEPKKPKMSIKRSNNK 287
Query: 780 YF 781
F
Sbjct: 288 NF 289
Score = 69 (29.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 30/115 (26%), Positives = 57/115 (49%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++ LN+ T+D++ +F G I V + S G+ S +GFV F S+ +
Sbjct: 200 IFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD----SSGR--SRCFGFVVFSNENSVAK 253
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQA 697
LK ++ D+ +E++++ + ++KR S+N + SK +IPF A
Sbjct: 254 VLKHKRHKIYDK-MVEVRKAEP--KKPKMSIKR-SNN---KNFSKF-PPHIPFMA 300
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 138 (53.6 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ G++ V LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 395 YQHLDGTVFLGRMLHLIP-GKPKEN 418
++G GR + + GK EN
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSEN 88
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 135 (52.6 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 30/94 (31%), Positives = 52/94 (55%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+++ G++F+ L++ ED L + F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 393 QAYQHLDGTVFLGRMLHLIP-GKPK-ENEGNVDG 424
A ++G GR + + GK E G G
Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAGKSSGERRGGYRG 94
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I LNF + ED + + F K G I+ V V + ++ K S G+GFV F +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKR-----SRGFGFVTFENVDDAKD 61
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A+ + S+D QI + ++ ++
Sbjct: 62 AMMAMNGKSVDGRQIRVDQAGKS 84
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 154 (59.3 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 164 (62.8 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 50/212 (23%), Positives = 97/212 (45%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN ++++R F + G SV V R KS G +GFV + E
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG------FGFVSYEKHEDA 173
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR----KSSNVAKQTGSKILVRNIPFQ 696
N+A++ + + I + R+ + +E +A ++ K +++ G + ++N+
Sbjct: 174 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 233
Query: 697 AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYG 756
++ + F FG + ++ M+ G +GFGFV F + EA +A+ + + + G
Sbjct: 234 IDDEKLRKEFSPFGSITSAKV---MLEDGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG 288
Query: 757 RR-LVLEWAEEADNVEDIRKRTNRYFGTAVGL 787
+ L + A+ + E TN+Y G+
Sbjct: 289 SKPLYVALAQRKE--ERKAHLTNQYMQRVAGM 318
Score = 138 (53.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 54/208 (25%), Positives = 97/208 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++IKNL+ + ++ F G I S V ++ G S GY FV F T+E+ N+
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----G---SKGYAFVHFETQEAANK 82
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A++ + L++ ++ + R E EA + AK+ + + ++N + +
Sbjct: 83 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-----AKEF-TNVYIKNFGEEVDDENL 136
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-----KALCQSTHLYGR 757
ELF FG+ V++ + SG +GFGFV + +A +A+ K + + GR
Sbjct: 137 RELFSQFGKTLSVKVMRDC--SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGR 194
Query: 758 --RLVLEWAEEADNVEDIRK-RTNRYFG 782
+ V AE E +++ R +RY G
Sbjct: 195 AQKKVERQAELKRKFEQLKQERISRYQG 222
Score = 41 (19.5 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALD-----YFNNTYV 83
I + L F G + ++ G + +AF+ + ++ A A++ N+ V
Sbjct: 39 IDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKV 97
Query: 84 FSSRIKVEK 92
F R K K
Sbjct: 98 FVGRFKSRK 106
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 283 KGKQLNIYKYSKDNSAKYSGAAD---DNNNASMEN 314
KGK + I +D S + SG + N + S++N
Sbjct: 7 KGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 41
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 109 (43.4 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 34/113 (30%), Positives = 56/113 (49%)
Query: 313 ENIKAKHWKSQED---SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYG-P-LAEVI 367
E I K + ++D S A + +++ NL Y V L ++ + + P L EV+
Sbjct: 58 ETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVL 117
Query: 368 LPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHL-IPGKPKENE 419
+++T +++GFA VT E +LDGT +LGR L + KPK N+
Sbjct: 118 Y--NRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNK 168
Score = 87 (35.7 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ NL++ T +S+ F++CG + V D G+ S GYGFV + ++ +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDT---GR--SRGYGFVCYSSKAEMET 233
Query: 643 ALKVLQNSSLDEHQIEL 659
AL+ L L+ I +
Sbjct: 234 ALESLDGFELEGRAIRV 250
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 156 (60.0 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 53/176 (30%), Positives = 84/176 (47%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T L + L ++D IR F G + S + R K GQ S+GYGFV + +E
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDK---VTGQ--SLGYGFVNYVKQEDA 164
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
+A+ L L+ N+ ++ ++ R SS K G+ + V +P QS
Sbjct: 165 EKAINALNG---------LRLQNKTIK---VSIARPSSESIK--GANLYVSGLPKNMTQS 210
Query: 701 EVEELFKAFGELKFVR-LPKKMVG---SGLHRGFGFVEFITKNEAKRAMKALCQST 752
++E LF +G++ R L + G +GL +G GF+ F + EA RA+K L +T
Sbjct: 211 DLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTT 266
Score = 104 (41.7 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 333 IAESGR-IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
IA SG IFV NL+ E+ L +LF +G + V + D +++K KGF VT E A
Sbjct: 356 IASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEA 415
Query: 392 TQAYQHLDGTVFLGRMLHLIPGKPKENE 419
A Q L+G R+L + K +N+
Sbjct: 416 VLAIQSLNGYTLGNRVLQ-VSFKTNKNK 442
Score = 88 (36.0 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 25/115 (21%), Positives = 53/115 (46%)
Query: 301 SGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKY 360
+ A+++NNN + N + + ++ D + V L T+++D++ LF +
Sbjct: 76 NAASNNNNNNNNTNNNNNNNATANNNNNNEPD--PKTNLIVNYLPQTMSQDEIRSLFVSF 133
Query: 361 GPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415
G + L DK T ++ G+ V ++ E A +A L+G + + + +P
Sbjct: 134 GEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARP 188
Score = 75 (31.5 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725
L S+ T N +G I V N+ +++ + +LF FG ++ V++ + + S
Sbjct: 341 LTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQ-SN 399
Query: 726 LHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
+GFGFV EA A+++L + + G R++
Sbjct: 400 KCKGFGFVTMTNYEEAVLAIQSL--NGYTLGNRVL 432
Score = 70 (29.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 25/103 (24%), Positives = 45/103 (43%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+ L N T+ + F G I + + LS G GF++F R ++
Sbjct: 198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADR 257
Query: 643 ALKVLQNSSLDE--HQIELKRSNRNLESEATTVKRKSSNVAKQ 683
A+K L ++ I +K +N N S +++ ++ +A Q
Sbjct: 258 AIKELNGTTPKNSTEPITVKFAN-NPSSNKNSMQPLAAYIAPQ 299
Score = 62 (26.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSR 87
++Q+++++ F G V +L + G+ + F+ Y +++ A+ A++ N + +
Sbjct: 121 MSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKT 180
Query: 88 IKV 90
IKV
Sbjct: 181 IKV 183
Score = 54 (24.1 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGITG 486
+ V LP +DL++LF P+G + R+L ITG
Sbjct: 198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCD--NITG 234
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 157 (60.3 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 46/193 (23%), Positives = 93/193 (48%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T++ + +TE + F K G + V + ++ + S G G+++FY S+
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRR-----SKGVGYIEFYDVMSVP 223
Query: 642 QALKVLQNSSLDEH-QIELKRSNRNL-ESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
A+ + L + ++ + +NL +S +TTV + A + K+ V N+ F +
Sbjct: 224 MAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVG--GTGPADR---KLYVGNLHFNMSE 278
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
++ ++F+AFG ++ V+LP +G +GFGF++F+ +K A AL + GR +
Sbjct: 279 LQLRQIFEAFGPVELVQLPLDPE-TGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTI 337
Query: 760 VLEWAEEADNVED 772
+ + +D
Sbjct: 338 KVSSVSDHIGTQD 350
Score = 127 (49.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+++V NL + ++E L ++FE +GP+ V LP+D ET + KGF + F+ EH+ A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 398 LDGTVFL-GRML 408
L+G + + GR +
Sbjct: 326 LNGKLEIAGRTI 337
Score = 40 (19.1 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGY 65
K T+ + F + G V DV+L + RR +GY
Sbjct: 178 KATERDVYEFFSKAGKVRDVRL--IMDRNSRRSKGVGY 213
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 150 (57.9 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 46/170 (27%), Positives = 79/170 (46%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T +YIKN + ++ ++ F GP SV V + KS G +GFV F E
Sbjct: 63 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKG------FGFVSFERHEDA 113
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRK-----SSNVAKQTGSKILVRNIPF 695
+A+ + L+ QI + R+ + +E + T +KRK + + G + V+N+
Sbjct: 114 QKAVDEMNGKELNGKQIYVGRAQKKVERQ-TELKRKFEQMKQDRITRYQGVNLYVKNLDD 172
Query: 696 QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + F FG + ++ M+ G +GFGFV F + EA +A+
Sbjct: 173 GIDDERLRKEFSPFGTITSAKV---MMEGGRSKGFGFVCFSSPEEATKAV 219
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 46/197 (23%), Positives = 82/197 (41%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAY-IGFKDEKNCNKALNKNKS 280
+++ + +KN + + LK F P V T G + GF + A K
Sbjct: 60 KEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDA-QKAVD 118
Query: 281 FWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIF 340
GK+LN Y G A E +K K + ++D + + + ++
Sbjct: 119 EMNGKELN-------GKQIYVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV----NLY 166
Query: 341 VRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
V+NL + ++ L K F +G + + E ++KGF V F PE AT+A ++G
Sbjct: 167 VKNLDDGIDDERLRKEFSPFGTITSA--KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 224
Query: 401 TVFLGRMLHLIPGKPKE 417
+ + L++ + KE
Sbjct: 225 RIVATKPLYVALAQRKE 241
Score = 42 (19.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP-KENEGNVDGK 425
+KG+ V F E A +A + ++G + R + + K KE E + +
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 58
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 154 (59.3 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 154 (59.3 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 154 (59.3 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 70
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 71 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 121
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 122 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 153
Score = 88 (36.0 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDS + + +IFV + E L FE+YG + + + D+ +
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVK-KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142
Query: 375 DKTKGFALVTF 385
K +GFA VTF
Sbjct: 143 GKKRGFAFVTF 153
Score = 75 (31.5 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALD 76
++ T E L++ FE+ GT+TD V ++ + R F F+ Y ++ AA++
Sbjct: 23 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 142 (55.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 151 (58.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T+DS+R HF+K G + V R DP++ S G+GFV + E ++
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKR---SRGFGFVTYSCVEEVDA 65
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I ++ +
Sbjct: 66 AMSARPHK-VDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTEEYNL 116
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
E F+ +G+++ + + + SG RGF FV F
Sbjct: 117 REYFEKYGKIETIEVMEDRQ-SGKKRGFAFVTF 148
Score = 103 (41.3 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L + FEKYG + + + D+++
Sbjct: 79 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQS 137
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 138 GKKRGFAFVTF--DDHDT 153
Score = 66 (28.3 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ FE+ GT+TD V ++ + R F F+ Y ++ AA+
Sbjct: 18 FETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 67
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 154 (59.3 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 91
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 92 AMNARPHK-VDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 142
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 143 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 174
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 133 (51.9 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D+ + V NL+Y + D L ++FEKYG + +V +P D+ T +++GFA V F A
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 392 TQAYQHLDGTVFLGRMLHL 410
A +DG V GR L +
Sbjct: 69 EDAMDAMDGAVLDGRELRV 87
Score = 105 (42.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T+L + NL + ++ D++RR F+K G + V + R + K S G+ FV+F+ +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----SRGFAFVRFHDKRDA 68
Query: 641 NQALKVLQNSSLD--EHQIELKRSNRNLES 668
A+ + + LD E ++++ R R +S
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS 98
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 133 (51.9 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D+ + V NL+Y + D L ++FEKYG + +V +P D+ T +++GFA V F A
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 392 TQAYQHLDGTVFLGRMLHL 410
A +DG V GR L +
Sbjct: 69 EDAMDAMDGAVLDGRELRV 87
Score = 105 (42.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T+L + NL + ++ D++RR F+K G + V + R + K S G+ FV+F+ +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-----SRGFAFVRFHDKRDA 68
Query: 641 NQALKVLQNSSLD--EHQIELKRSNRNLES 668
A+ + + LD E ++++ R R +S
Sbjct: 69 EDAMDAMDGAVLDGRELRVQMARYGRPPDS 98
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 105 (42.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/91 (25%), Positives = 51/91 (56%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D LY+ NL+ TED ++++F+ GPIA++ + K+ K+ + Y FV+++
Sbjct: 74 DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKN------VNYAFVEYHQSHD 127
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEA 670
N AL+ L ++ + +++ + ++ +S +
Sbjct: 128 ANIALQTLNGKQIENNIVKINWAFQSQQSSS 158
Score = 100 (40.3 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRI-FVRNLSYTVTED 351
S D S++ S A + N+ + +N + ++ S + S R+ +V NL +TED
Sbjct: 31 SADPSSEQSVAVEGNSEQAEDN-QGENDPSVVPANAITGGRETSDRVLYVGNLDKAITED 89
Query: 352 DLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
L + F+ GP+A + + IDK +K +A V + A A Q L+G
Sbjct: 90 ILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNG 137
Score = 82 (33.9 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
IT++ LK F+ G + ++++ K +AF+ YH+ A AL N + ++ +
Sbjct: 86 ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 145
Query: 89 KV 90
K+
Sbjct: 146 KI 147
Score = 79 (32.9 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 580 DT-TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
DT L++ +LN N ++++R FK S V S S GYGFV F +++
Sbjct: 160 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS-----SRGYGFVSFTSQD 214
Query: 639 SLNQALKVLQNSSLDEHQIEL----KRSNRN 665
A+ +Q L+ + + KR N N
Sbjct: 215 DAQNAMDSMQGQDLNGRPLRINWAAKRDNNN 245
Score = 66 (28.3 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 690 VRNIPFQAKQSEVEELFKAFGE-LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ NIP A ++++ LF+ FG L F P+K G F+++ T +A + AL
Sbjct: 345 IGNIPHFATEADLIPLFQNFGFILDFKHYPEK--------GCCFIKYDTHEQAAVCIVAL 396
Query: 749 CQSTHLYGRRLVLEWAEEADN 769
GR L W +E N
Sbjct: 397 ANFP-FQGRNLRTGWGKERSN 416
Score = 46 (21.3 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 486 GLVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
G V F ++ A+ A +S+ PL + WA
Sbjct: 206 GFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T+DS+R HF+K G + V R DP++ S G+GFV + E ++
Sbjct: 23 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKR---SRGFGFVTYSCVEEVDA 77
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I ++ +
Sbjct: 78 AMSARPHK-VDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTEEYNL 128
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
E F+ +G+++ + + + SG RGF FV F
Sbjct: 129 REYFEKYGKIETIEVMEDRQ-SGKKRGFAFVTF 160
Score = 103 (41.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L + FEKYG + + + D+++
Sbjct: 91 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQS 149
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 150 GKKRGFAFVTF--DDHDT 165
Score = 66 (28.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ FE+ GT+TD V ++ + R F F+ Y ++ AA+
Sbjct: 30 FETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 79
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 113 (44.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D ++S +IFV + + E +L + F+K+G + EV++ D E + +GF +TF +
Sbjct: 86 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 145
Query: 392 TQAYQ-HLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
QA H +G+ + + +P++++ G+
Sbjct: 146 DQAVNMHFHD--IMGKKVEVKRAEPRDSKSQAPGQ 178
Score = 102 (41.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMP 388
E G++FV L ++ T++ L F +YG + + ++ DK T++++GF V F P
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 90 (36.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/89 (24%), Positives = 49/89 (55%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++ + N E +R +FKK G + V + + + P G+GF+ F +S++Q
Sbjct: 93 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRP-----RGFGFITFEDEQSVDQ 147
Query: 643 ALKVLQNSSLDEHQIELKRSN-RNLESEA 670
A+ + + + + ++E+KR+ R+ +S+A
Sbjct: 148 AVNMHFHDIMGK-KVEVKRAEPRDSKSQA 175
Score = 75 (31.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+KI V IP ++E+ E FK FG + V + RGFGF+ F + +A+
Sbjct: 91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAV 149
Query: 746 KALCQSTHLYGRRLVLEWAEEADN 769
+ G+++ ++ AE D+
Sbjct: 150 NMHFHD--IMGKKVEVKRAEPRDS 171
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGY 65
+ TQE L++ F + G V D V +K T + R F F+ +
Sbjct: 19 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+ +I VRNL ++ +ED L + F +G +AEV L D+ ++KG+A + F + A A
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAI 98
Query: 396 QHLDGTVFLGRMLHLIPGKPKENE 419
+ +D ++ GRM+++ KP + +
Sbjct: 99 ETMDRRMYNGRMIYIDIAKPGKRD 122
Score = 108 (43.1 bits), Expect = 0.00023, P = 0.00023
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 674 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 733
K K+S SKI+VRN+PF + ++ F AFGE+ V+L K +G+ F+
Sbjct: 28 KIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKR-SKGYAFI 86
Query: 734 EFITKNEAKRAMKALCQSTHLYGRRLV 760
+F ++++A A++ + +Y R++
Sbjct: 87 QFTSQDDAFLAIETM--DRRMYNGRMI 111
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 39/119 (32%), Positives = 58/119 (48%)
Query: 307 NNNASMENI-KAKHWKSQEDSVQFAEDI-AESGRIFVRNLSYTVTEDDLTKLFEKYGPLA 364
N +M+N+ K + Q + D+ +S IFV YT+TE DL +F +YG +
Sbjct: 2 NPLTNMKNVLKLSEHELQHGGKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVV 61
Query: 365 EVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRML---HLIPGKP-KENE 419
+ L D +T K+KGF + + A +L+G L R L H+ KP KENE
Sbjct: 62 NINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENE 120
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G++F+ L+ E L +F KYG + EV+L D+ET+K++GFA VTF P A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 397 HLDGTVFLGRMLHLIPG-KPK-EN 418
++G G+ + + KP EN
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFEN 91
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 672 TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 731
T+ A T + V N+P++A +S V+ELF FGE+ VRL K +G RGFG
Sbjct: 50 TLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDK-RTGKRRGFG 108
Query: 732 FVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKR 776
FV I ++A+ A+ AL + ++ R L + A + + E++ ++
Sbjct: 109 FV-VIAASQAQTAIDALNEKEYMQ-RTLKVRIANDPKSDEEMAEQ 151
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ G++FV LS+ E L +F KYG + EV++ D+ET +++GF VTF E A A
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 395 YQHLDGTVFLGRMLHLIPGKPKENE 419
++G GR + + N+
Sbjct: 64 MAGMNGKTVDGRQIRVDQAGKSSND 88
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 672 TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 731
T+ A T + V N+P++A +S V+ELF FGE+ VRL K +G RGFG
Sbjct: 50 TLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDK-RTGKRRGFG 108
Query: 732 FVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKR 776
FV I ++A+ A+ AL + ++ R L + A + + E++ ++
Sbjct: 109 FV-VIAASQAQTAIDALNEKEYMQ-RTLKVRIANDPKSDEEMAEQ 151
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 131 (51.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDG 400
A ++G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 302 GAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYG 361
GAA A+ + +S+ + +++ + G++F+ LS+ T+ DL F K+G
Sbjct: 10 GAAAAATAAASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFG 69
Query: 362 PLAEVILPIDKETDKTKGFALVTF 385
+ + L +D T +++GF V F
Sbjct: 70 EVVDCTLKLDPITGRSRGFGFVLF 93
Score = 95 (38.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 33/121 (27%), Positives = 53/121 (43%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G+GFV F ES++ KV+ EH+ L + KR + K+
Sbjct: 85 SRGFGFVLFKESESVD---KVMDQK---EHK---------LNGKVIDPKRAKAMKTKEPV 129
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
KI V + + ++ E F FGE++ + LP + RGF F+ F + K+ M
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIM 188
Query: 746 K 746
+
Sbjct: 189 E 189
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 111 (44.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 45/199 (22%), Positives = 85/199 (42%)
Query: 580 DTT----LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
DTT +++ +L+ +R F+ G ++ V R + S GYGFV +
Sbjct: 130 DTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTK-----SKGYGFVSYP 184
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSNRNL--ESEATTVKRKS-SNVAKQTG---SKIL 689
RE +A++ + L I + R + + + KS + QT + +
Sbjct: 185 KREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVY 244
Query: 690 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALC 749
V NI + E+ + F +FG + VR+ K +G+ FV+F K+ A +A+ +
Sbjct: 245 VGNIA-SLTEDEIRQGFASFGRITEVRIFKM-------QGYAFVKFDNKDAAAKAIVQM- 295
Query: 750 QSTHLYGRRLVLEWAEEAD 768
+ + G+ + W + D
Sbjct: 296 NNQDVGGQLVRCSWGKTGD 314
Score = 88 (36.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 31/127 (24%), Positives = 54/127 (42%)
Query: 302 GAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYG 361
G DD N + +K ++ + E ++V NL TVTED + LF + G
Sbjct: 13 GYNDDVNTGYNARMHSK--LAEREGFHLGNGSDEPRTLYVGNLDSTVTEDFIATLFNQIG 70
Query: 362 PLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPG-KPKENEG 420
+ + + D D +A V F A+QA Q ++ + L R + + +P + +
Sbjct: 71 SVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQS 127
Query: 421 NVDGKVH 427
+D H
Sbjct: 128 KIDTTRH 134
Score = 61 (26.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 29 ITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
+T++ + F + G+VT ++ + +G +AF+ + QA AL N + +
Sbjct: 57 VTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREM 114
Query: 89 KV 90
KV
Sbjct: 115 KV 116
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 151 (58.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T+DS+R HF+K G + V R DP++ S G+GFV + E ++
Sbjct: 35 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKR---SRGFGFVTYSCVEEVDA 89
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I ++ +
Sbjct: 90 AMSARPHK-VDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTEEYNL 140
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
E F+ +G+++ + + + SG RGF FV F
Sbjct: 141 REYFEKYGKIETIEVMEDRQ-SGKKRGFAFVTF 172
Score = 103 (41.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L + FEKYG + + + D+++
Sbjct: 103 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQS 161
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 162 GKKRGFAFVTF--DDHDT 177
Score = 66 (28.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ FE+ GT+TD V ++ + R F F+ Y ++ AA+
Sbjct: 42 FETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 91
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V ++SY TEDDL +LF G + V + D ET ++KG V L E A +A + L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 399 DGTVFLGRMLHLIPGKPKE 417
DG + R++ + +P++
Sbjct: 65 DGALLRNRVITVSVARPQK 83
Score = 103 (41.3 bits), Expect = 0.00016, P = 0.00016
Identities = 27/105 (25%), Positives = 51/105 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+ ++++ +TED +RR F G + SV + DP++ G+ S G G+V+ T E +
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIIT--DPET-GR--SKGCGYVRMLTEEEAKE 59
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK 687
A++ L + L I + + ++ +R + G K
Sbjct: 60 AIETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRPGKK 104
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V ++SY TEDDL +LF G + V + D ET ++KG V L E A +A + L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 399 DGTVFLGRMLHLIPGKPKE 417
DG + R++ + +P++
Sbjct: 65 DGALLRNRVITVSVARPQK 83
Score = 103 (41.3 bits), Expect = 0.00016, P = 0.00016
Identities = 27/105 (25%), Positives = 51/105 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LY+ ++++ +TED +RR F G + SV + DP++ G+ S G G+V+ T E +
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIIT--DPET-GR--SKGCGYVRMLTEEEAKE 59
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK 687
A++ L + L I + + ++ +R + G K
Sbjct: 60 AIETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRPGKK 104
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G++F+ L+ E L +F KYG + EV+L D+ET+K++GFA VTF P A A +
Sbjct: 10 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
Query: 397 HLDGTVFL 404
++G + +
Sbjct: 70 DMNGKMMV 77
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 142 (55.0 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIP-GKPKEN 418
A ++G GR + + GK +N
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDN 88
>WB|WBGene00011043 [details] [associations]
symbol:rbm-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0040026 EMBL:Z83119 HSSP:P52298
eggNOG:NOG323727 GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL
PIR:T23934 RefSeq:NP_497077.2 ProteinModelPortal:O62325 SMR:O62325
STRING:O62325 PaxDb:O62325 EnsemblMetazoa:R05H10.2.1
EnsemblMetazoa:R05H10.2.2 GeneID:175145 KEGG:cel:CELE_R05H10.2
UCSC:R05H10.2 CTD:175145 WormBase:R05H10.2 HOGENOM:HOG000021963
InParanoid:O62325 NextBio:886958 Uniprot:O62325
Length = 608
Score = 131 (51.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 667 ESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 726
E E + + RK AK ++++RN+PF+ K+ +++ L G+ + LP
Sbjct: 77 EGEKSAI-RKRFEQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKT 135
Query: 727 HRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVE 771
GFGF++F+ K +A++ + + + GR + +WA + D E
Sbjct: 136 CAGFGFIQFVEKADAEKG-REFFNTNKVLGRSVAADWALDKDTYE 179
Score = 118 (46.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 42/161 (26%), Positives = 79/161 (49%)
Query: 266 KDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKY--SGAADDNNNASMENIKAKHWKSQ 323
K EK+ K K+K F + + + S+D S + S A++D+ + K K+ K+Q
Sbjct: 194 KVEKD-EKPEEKSKKFDEEEGEEESEGSEDGSEAFEASEASEDDEDDEEPAKKPKNPKAQ 252
Query: 324 EDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALV 383
++ E I E +F+RNLSY E+ + + K+G + I+ K++ +KG A V
Sbjct: 253 ---LKTDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFV 309
Query: 384 TFLMPEHATQAYQHL-DGTVFLGRMLHLIPGKPKENEGNVD 423
F P A+ + + DG + R++ P++ +++
Sbjct: 310 HFSTPIEASNCIEGVEDGVIIDNRLVKANLAIPRKEAADME 350
Score = 94 (38.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 328 QFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT-KGFALVTFL 386
+F + + R+ +RNL + ++DL L G E++LP ++ KT GF + F+
Sbjct: 86 RFEQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFV 145
Query: 387 MPEHATQAYQHLDGTVFLGR 406
A + + + LGR
Sbjct: 146 EKADAEKGREFFNTNKVLGR 165
Score = 86 (35.3 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 37/170 (21%), Positives = 74/170 (43%)
Query: 591 NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNS 650
N+ E+ ++H KK V V + + P+ + G + E ++A + + S
Sbjct: 181 NAHEE--KQHLKKV-----VKVEKDEKPEEKSKKFDEEEGEEESEGSEDGSEAFEASEAS 233
Query: 651 SLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFG 710
DE E + +N +++ T ++ + G + +RN+ + K+ ++E FG
Sbjct: 234 EDDEDDEEPAKKPKNPKAQLKT----DESITE--GKVVFLRNLSYDTKEELIKEELSKFG 287
Query: 711 ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLV 760
++ + K SG +G FV F T EA ++ + + + RLV
Sbjct: 288 KIDLAIICKYK-DSGHSKGTAFVHFSTPIEASNCIEGV-EDGVIIDNRLV 335
Score = 81 (33.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 44/155 (28%), Positives = 69/155 (44%)
Query: 583 LYIKNLNFNSTEDSIRRHFKK-CGPIASVTVAR----KKDPKSPGQFLSMGYGFVQFYTR 637
L I NL + ++ +K P A +T R KK G+ S G+GFV F
Sbjct: 413 LCIHNLPQKINDVKLKELAQKFTSPGALITECRVWMDKKRLTPDGKPKSSGFGFVAFKEH 472
Query: 638 ESLNQALKVLQNSSLD---EHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694
+ LK L N++ +H+ ++ S NL + +R N ++ +++ I
Sbjct: 473 MHALECLKKLNNNAETFHKDHRPIVEFSVENLLALQARARRNVKNTTEKMSERVVNEKIR 532
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGL-HR 728
Q KQS + E+ A G +KF LPK G + HR
Sbjct: 533 QQVKQS-IGEVHTA-G-MKF--LPK-FTGKKIRHR 561
Score = 58 (25.5 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 662 SNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAF---GELKF---V 715
+ R +EA K +++N+ ++ + N+P + +++EL + F G L V
Sbjct: 388 AKRERIAEAMRKKLENTNMFISP-VRLCIHNLPQKINDVKLKELAQKFTSPGALITECRV 446
Query: 716 RLPKKMV---GSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGR--RLVLEWAEEADNV 770
+ KK + G GFGFV F A +K L + + + R ++E++ E N+
Sbjct: 447 WMDKKRLTPDGKPKSSGFGFVAFKEHMHALECLKKLNNNAETFHKDHRPIVEFSVE--NL 504
Query: 771 EDIRKRTNR 779
++ R R
Sbjct: 505 LALQARARR 513
Score = 46 (21.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 60 FAFIGYHREDQAQAALDYFNNTYVFSSRIKVEKCSNLGDTTKPKSWSKYAPDSSAYQKLH 119
F FI + + A+ ++FN V + + + DT Y +++A+++
Sbjct: 139 FGFIQFVEKADAEKGREFFNTNKVLGRSVAADWALDK-DT--------Y--ETNAHEEKQ 187
Query: 120 NIAPKQDLKPEHTKDSKPGKKSK 142
++ K+ +K E KD KP +KSK
Sbjct: 188 HL--KKVVKVE--KDEKPEEKSK 206
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG 486
+++ ++NL Y T +K FG + ++ Y +G
Sbjct: 263 KVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSG 301
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 152 (58.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 43/168 (25%), Positives = 80/168 (47%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+++ L++N + + + F++ G I V D +S G+ S GYG+V F T E+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIM--DGQS-GR--SKGYGYVDFETPEAAK 318
Query: 642 QALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSK---ILVRNIPFQAK 698
A+ +D + L SN + ++++ N Q + V N+ F A
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNAT 378
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ ++ F G+++ +RLP SG +GFG+V F + AK+ ++
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQ-SGRLKGFGYVTFSDIDSAKKCVE 425
Score = 136 (52.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 322 SQEDSVQFAEDIAE-SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGF 380
+Q+ + F + ++E S +FV NLS+ TEDDL+ F G + + LP D ++ + KGF
Sbjct: 350 AQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGF 409
Query: 381 ALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
VTF + A + + ++G GR L P+ G+ G+
Sbjct: 410 GYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGGR 453
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 48/194 (24%), Positives = 89/194 (45%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWK--SQEDSVQF---AEDIAESGRIFVRNLSYT 347
S S ++D + +S E+ K + + S+E + ++D E+ +FV LS+
Sbjct: 214 SSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWN 273
Query: 348 VTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFL-GR 406
V + L + FE+YG + + +D ++ ++KG+ V F PE A +A +GT + GR
Sbjct: 274 VDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE-AAKAAVAANGTKEIDGR 332
Query: 407 MLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKA 466
M++L P+ N ++++ F + S + V NL + DL
Sbjct: 333 MVNLDLSNPRP--ANPQP-----YAQQRAGNFGDQLSEPSDTVF-VGNLSFNATEDDLST 384
Query: 467 LFEPFGDLGRVLVP 480
F GD+ + +P
Sbjct: 385 AFGGCGDIQSIRLP 398
Score = 51 (23.0 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTE-GKFRRFAFIGYHREDQAQAAL 75
+ + + L +FEE GT+ ++ + G+ + + ++ + + A+AA+
Sbjct: 272 WNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Score = 46 (21.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/94 (19%), Positives = 44/94 (46%)
Query: 266 KDEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQED 325
K K K+ K +S + + + S+ +S++ ++ ++ ++S E+ ++ S+E+
Sbjct: 69 KSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSE---SEEE 125
Query: 326 SVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEK 359
+ E+ ES + E+ + K+ EK
Sbjct: 126 VIVKTEEKKESSSESSSSSESEEEEEAVVKIEEK 159
Score = 37 (18.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 276 NKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+K+K K I K S + + AS K K Q+ S + E +E
Sbjct: 27 SKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSE 86
Query: 336 S 336
S
Sbjct: 87 S 87
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 144 (55.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 35/106 (33%), Positives = 59/106 (55%)
Query: 674 KRKSSNVAKQTG-SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 732
+R SS + +G S +L+RN+P A+ +++ + F+ FG LK + LP+ +G RGFGF
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYY-TGEPRGFGF 92
Query: 733 VEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTN 778
V++ +A AMK + + GR + + +AEE + TN
Sbjct: 93 VKYRYAEDAAEAMKRMNHKV-IGGREIAIVFAEENRKTPQEMRTTN 137
Score = 114 (45.2 bits), Expect = 0.00084, P = 0.00084
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E SG + +RNL +DL FE++GPL ++ LP + T + +GF V + E
Sbjct: 42 ESSGPSG-LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAED 100
Query: 391 ATQAYQHLDGTVFLGRMLHLI 411
A +A + ++ V GR + ++
Sbjct: 101 AAEAMKRMNHKVIGGREIAIV 121
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S ++FV LS T+ L +LF +G + E L D ET + KGF +TF + A +A
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 396 QHLDGTVFLGRMLHLIPGKPKE 417
+ LDG + GR++ + K E
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNAE 87
Score = 109 (43.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739
+AK+ +++ V + + +LF FG++K RL + + +GFGF+ F +++
Sbjct: 1 MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSE-TQRPKGFGFITFDSED 59
Query: 740 EAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTN 778
+A++A+K+L + RL+ + E A N E++R N
Sbjct: 60 DARKALKSL--DGKIVDGRLI--FVEVAKNAEEVRAGIN 94
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +S VT D L F +G + +VILP+D +T K KGF + F +PE A A ++
Sbjct: 17 LYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAADALDNM 76
Query: 399 DGTVFLGRMLHLIPGKPKEN 418
+ GR++ KP +N
Sbjct: 77 HESEIFGRVIKCSIAKPIKN 96
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G++F+ L+ E L +F KYG + EV+L D+ET+K++GFA VTF P A A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 397 HLDG 400
++G
Sbjct: 68 DMNG 71
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G++F+ L+ E L +F KYG + EV+L D+ET+K++GFA VTF P A A +
Sbjct: 10 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
Query: 397 HLDG 400
++G
Sbjct: 70 DMNG 73
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 129 (50.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+TLY+ NL+F +TE+ I+ F KCG + + + K K+P G+ FV++YTR
Sbjct: 43 STLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTP-----CGFCFVEYYTRADA 97
Query: 641 NQALKVLQNSSLDEHQI 657
A++ + + LD+ I
Sbjct: 98 EHAMRFINGTRLDDRII 114
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 113 (44.8 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 38/166 (22%), Positives = 78/166 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ N+ N E I++ + GP + V K+P++ G+ + G+ F+++Y
Sbjct: 174 LFLGNVPRNWMESDIKKAANRIGPGVQI-VELPKEPQNMGR--NRGFAFIEYYNHACAEY 230
Query: 643 ALKVLQNSS--LDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
+ + + N S LD++ + + ES + S++ K + ++N+P Q
Sbjct: 231 SKQKMSNPSFKLDDNAPTVSWA----ESRSGGGGDSSASQVKA----LYIKNLPRDITQE 282
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
++ LF+ G++ V +P G R +GFV + + RA+K
Sbjct: 283 RLKALFEHHGKILKVVIPPAKPGKEDSR-YGFVHYAERTSVMRALK 327
Score = 102 (41.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LYIKNL + T++ ++ F+ G I V + P PG+ S YGFV + R S+ +
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIP----PAKPGKEDSR-YGFVHYAERTSVMR 324
Query: 643 ALKVLQNSSLDEHQIE--LKRSNRNLESEATTVK 674
ALK + +D H ++ L + + ++ TV+
Sbjct: 325 ALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQ 358
Score = 86 (35.3 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 321 KSQEDSVQFAEDIA---ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKT 377
+ +E+ + E +A +++ + TE DL G + EV + +K++
Sbjct: 73 EEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDG 132
Query: 378 KGFALVTFLMPEHATQAYQHLDGTVFLGRML 408
KG+A VTF + A +A L+ T F G+ +
Sbjct: 133 KGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Score = 81 (33.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGE-LKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
Q ++ + N+P +S++++ G ++ V LPK+ G +RGF F+E+ A
Sbjct: 169 QAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACA 228
Query: 742 KRAMKALCQ-STHLYGRRLVLEWAE 765
+ + + + S L + WAE
Sbjct: 229 EYSKQKMSNPSFKLDDNAPTVSWAE 253
Score = 75 (31.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 30 TQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSSRI 88
T+ LK G VT+V++ + G + +AF+ + +D A A+D NNT RI
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Query: 89 K 89
K
Sbjct: 164 K 164
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 148 (57.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 43/153 (28%), Positives = 78/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V DP + S G+GFV + T E ++
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGMLTDCVVM---DPNTKR---SRGFGFVTYTTVEEVDA 78
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ +S+ R +++ T KI V I ++ +
Sbjct: 79 AMNA-RPQKMDGRVVEPKRAVSREDSQ-----RPGAHL---TVKKIFVGGIKEDTEEHHL 129
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + GSG RGF FV F
Sbjct: 130 RDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTF 161
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 99 (39.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ +SA+ GA D AS H S + A E ++F+ LS+ T+ D
Sbjct: 56 TEGSSAESEGAKID---ASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
L F K+G + + L +D T +++GF V F
Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Score = 95 (38.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 33/121 (27%), Positives = 53/121 (43%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G+GFV F ES++ KV+ EH+ L + KR + K+
Sbjct: 137 SRGFGFVLFKESESVD---KVMDQK---EHK---------LNGKVIDPKRAKAMKTKEPV 181
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
KI V + + ++ E F FGE++ + LP + RGF F+ F + K+ M
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIM 240
Query: 746 K 746
+
Sbjct: 241 E 241
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 150 (57.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 47/201 (23%), Positives = 93/201 (46%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+ +++++NL F+ T + ++ F G + + K G G G V+F ES
Sbjct: 121 ENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-----GHH--RGMGTVEFTKNES 173
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQ 699
+ A+ + + ++ +++ N E+ A +K++ G ++ + N+P+
Sbjct: 174 VQDAISKFDGALFMDRKLMVRQDNPPPEA-AKEFSKKATREEIDNGFEVFIINLPYSMNW 232
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
++++FK G + +R ++ +G RGFG V + T++E RA+ + GR
Sbjct: 233 QSLKDMFKECGHV--LRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTF-NGMEVEGR-- 287
Query: 760 VLEWAEEADNVEDIRKRTNRY 780
VLE E N RK +RY
Sbjct: 288 VLEVREGRFNK---RKNNDRY 305
Score = 95 (38.5 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
IFVRNL++ T +DL +LF G + E + K +G V F E A
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181
Query: 399 DGTVFLGRMLHLIPGKP 415
DG +F+ R L + P
Sbjct: 182 DGALFMDRKLMVRQDNP 198
Score = 63 (27.2 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 19/96 (19%), Positives = 45/96 (46%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++I NL ++ S++ FK+CG + + D + S G+G V + T + + +
Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVL------RADVELDFNGFSRGFGSVIYPTEDEMIR 274
Query: 643 ALKVLQNSSLDEHQIELK--RSNRNLESEATTVKRK 676
A+ ++ +E++ R N+ ++ +R+
Sbjct: 275 AIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQRRE 310
Score = 52 (23.4 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
I N+PF +S++ +LF G++ L K +G G VE+ +A ++
Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAEL--KPQENGQPTGVAVVEYENLVDADFCIQK 408
Query: 748 LCQSTHLYG 756
L + + YG
Sbjct: 409 L--NNYNYG 415
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+TLY+ NL+F +TE+ I+ F KCG + + + K K+P G+ FV++YTR
Sbjct: 43 STLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTP-----CGFCFVEYYTRADA 97
Query: 641 NQALKVLQNSSLDE 654
A++ + + LD+
Sbjct: 98 EHAMRFINGTRLDD 111
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 147 (56.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S ++F+ ++Y++ ED L + F KYG + + + +D+ET +++GF VTF E A+ A
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGNVDG 424
Q LDG GR++ + + + G G
Sbjct: 99 QALDGRDLHGRVVKVNYANDRTSGGGFGG 127
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/155 (29%), Positives = 78/155 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +TEDS+R HF++ G + V R DP + S G+GFV + + ++
Sbjct: 15 LFIGGLSFETTEDSLRAHFEQWGKLTDCVVMR--DPANKR---SRGFGFVTYSSVSEVDA 69
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNV--AKQTGSKILVRNIPFQAKQS 700
A+ + +D +E KR+ V R+ SN A T KI V I ++
Sbjct: 70 AMTARPHK-VDGRVVEPKRA----------VSREDSNKPGAHLTVKKIFVGGIKEDTEEY 118
Query: 701 EVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ E F+ +G+++ + + ++ +G RGF FV F
Sbjct: 119 HIREYFECYGKIETIDIMEER-STGKKRGFCFVTF 152
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 149 (57.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 50/191 (26%), Positives = 91/191 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ L++++T++++R +F + G + + KD K+ Q S G+GFV+F +
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIM--KD-KTTNQ--SRGFGFVKFKDPNCVGT 56
Query: 643 ALKVLQNSSLDEHQIELKRSN-RNLESEATTVK---RKSSNVAKQTGSKILVRNIPFQAK 698
L + +LD I+ K R ++ E T K +K S +KI V IP
Sbjct: 57 VL-ASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCG 115
Query: 699 QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRR 758
++E+ E FK FG + V + RGFGF+ F + +A+ + G++
Sbjct: 116 ETELREYFKKFGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVNMHFHD--IMGKK 172
Query: 759 LVLEWAEEADN 769
+ ++ AE D+
Sbjct: 173 VEVKRAEPRDS 183
Score = 109 (43.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 332 DIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
D +S +IFV + + E +L + F+K+G + EV++ D E + +GF +TF +
Sbjct: 98 DNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 157
Query: 392 TQAYQ-HLDGTVFLGRMLHLIPGKPKENEGNVDG 424
QA H +G+ + + +P++++ G
Sbjct: 158 DQAVNMHFHD--IMGKKVEVKRAEPRDSKSQTPG 189
Score = 66 (28.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
+ TQE L++ F + G V D V +K T + R F F+ + + L +T +
Sbjct: 9 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHT-LDG 67
Query: 86 SRIKVEKCSNLG---DTTKPKS-WSK 107
I + C+ G + T+PK W K
Sbjct: 68 RNIDPKPCTPRGMQPERTRPKEGWQK 93
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 100 (40.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ SA+ GA D AS H S + A E ++F+ LS+ T+ D
Sbjct: 56 TEGGSAEAEGAKID---ASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKD 112
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
L F K+G + + L +D T +++GF V F
Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Score = 95 (38.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 33/121 (27%), Positives = 53/121 (43%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G+GFV F ES++ KV+ EH+ L + KR + K+
Sbjct: 137 SRGFGFVLFKESESVD---KVMDQK---EHK---------LNGKVIDPKRAKAMKTKEPV 181
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
KI V + + ++ E F FGE++ + LP + RGF F+ F + K+ M
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIM 240
Query: 746 K 746
+
Sbjct: 241 E 241
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 149 (57.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 52/192 (27%), Positives = 94/192 (48%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ L++++T++++R +F + G + + KD KS Q S G+GFV+F +
Sbjct: 13 LFVGGLDWSTTQETLRNYFSQYGEVVDCVIM--KD-KSTNQ--SRGFGFVKFKDPNCVRT 67
Query: 643 ALKVLQNSSLDEHQIELKRSN-RNLESEATTVKR--KSSNVAKQTGSKILVRNIPFQAKQ 699
L ++ LD I+ K R ++ E T K K S KI V IP +
Sbjct: 68 VLDTKPHN-LDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGE 126
Query: 700 SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM-KALCQSTH-LYGR 757
+E+ + F FG + V + RGFGF+ F EA++++ +A+ H + G+
Sbjct: 127 AELRDYFNRFGVVTEVVMIYD-AEKQRPRGFGFITF----EAEQSVDQAVNMHFHDIMGK 181
Query: 758 RLVLEWAEEADN 769
++ ++ AE D+
Sbjct: 182 KVEVKKAEPRDS 193
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 133 (51.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+++ G++F+ LS+ TE L F KYG + V + ++ET++++GF VTF P+ A
Sbjct: 1 MSDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60
Query: 393 QAYQHLDGTVFLGRMLHL 410
A + ++G GR + +
Sbjct: 61 DALEGMNGKSVDGRTIRV 78
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 143 (55.4 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 48/194 (24%), Positives = 88/194 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L++ NL ++ + + I F +CG + +V + R+KD K+ G+ FV + E
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKN------RGFAFVTMASGEEAQA 150
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + I + + R + + S T K+ V N+ ++A+ + +
Sbjct: 151 AIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHL 210
Query: 703 EELFKAFGELKFVRLPKKMVGS---GLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRL 759
ELF A F + ++V + G G+GFV F T+ EA+ A+ L + GR +
Sbjct: 211 RELFTA---ADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKL-NGKEIMGRPI 266
Query: 760 VLEWA-EEADNVED 772
L+++ A ED
Sbjct: 267 TLKFSLRSASESED 280
Score = 98 (39.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 322 SQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFA 381
SQE+ + ++ ++FV NL ++++ +D+++LF + G + V + I ++ K +GFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI-IRQKDGKNRGFA 138
Query: 382 LVTFLMPEHATQAYQHLDGTVFLGRML 408
VT E A A D GR++
Sbjct: 139 FVTMASGEEAQAAIDKFDTFQVSGRII 165
Score = 95 (38.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 34/112 (30%), Positives = 51/112 (45%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKC--GPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
LY+ NL + + +R F P+++ V DP+ G+ S GYGFV F TRE
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFA--DPE--GR--SSGYGFVSFATREEA 249
Query: 641 NQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRN 692
A+ L + I LK S R+ SE+ +N A + G + +N
Sbjct: 250 ENAITKLNGKEIMGRPITLKFSLRSA-SESEDGDSVEANNASEDGDTVEDKN 300
Score = 88 (36.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ ++ + F + GTV +V++ +GK R FAF+ ++AQAA+D F+ T+ S
Sbjct: 104 WSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFD-TFQVSG 162
Query: 87 RI 88
RI
Sbjct: 163 RI 164
Score = 78 (32.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEK--YGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+++V NL++ L +LF + P++ ++ D E ++ G+ V+F E A A
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAENAI 253
Query: 396 QHLDGTVFLGRMLHL 410
L+G +GR + L
Sbjct: 254 TKLNGKEIMGRPITL 268
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 139 (54.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 43/153 (28%), Positives = 73/153 (47%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T++S+R HF++ G + V R DP + S G+GFV + T E ++
Sbjct: 12 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKR---SRGFGFVTYATVEEVDA 66
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR A +++ S KI V I ++ +
Sbjct: 67 AMNARPHK-VDGRVVEPKR--------AVSIE-DSQRPGAYLNMKIFVGAIKEDTEEHHL 116
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F +G+ + + + GSG RGF FV F
Sbjct: 117 RDYFGQYGKTEVIEIVTDR-GSGKKRGFAFVTF 148
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 142 (55.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T+DS+R HF+K G + V R DP++ S G+GFV Y+ E ++
Sbjct: 15 LFIGGLSFETTDDSLREHFQKWGTLTDCVVMR--DPQTKR---SRGFGFVT-YSCEEVDA 68
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I + +
Sbjct: 69 AM-CARPHKVDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTGEYNL 119
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + + SG RGF FV F
Sbjct: 120 RDYFEKYGKIETIEVMEDRQ-SGKKRGFAFVTF 151
Score = 100 (40.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L FEKYG + + + D+++
Sbjct: 82 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQS 140
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 141 GKKRGFAFVTF--DDHDT 156
Score = 59 (25.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ F++ GT+TD V ++ + R F F+ Y E+ AA+
Sbjct: 22 FETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE-VDAAM 70
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 141 (54.7 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 46/153 (30%), Positives = 76/153 (49%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L I L+F +T+DS+R HF+K G + V R DP++ S G+GFV + E ++
Sbjct: 10 LLIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKR---SRGFGFVTYSCVEEVDA 64
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I ++ +
Sbjct: 65 AV-CARPHKVDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTEEYNL 115
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + + SG RGF FV F
Sbjct: 116 RDYFEKYGKIETIEVMEDSQ-SGKKRGFAFVTF 147
Score = 99 (39.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L FEKYG + + + D ++
Sbjct: 78 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQS 136
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 137 GKKRGFAFVTF--DDHDT 152
Score = 65 (27.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ FE+ GT+TD V ++ + R F F+ Y ++ AA+
Sbjct: 17 FETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV 66
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 104 (41.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 326 SVQ-FAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVT 384
SVQ + +++ +F+ NL TVTE+ L K+F++Y + D T K+ G+ +
Sbjct: 99 SVQKYITKTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLN 158
Query: 385 FLMPEHATQAYQHLDGTVFLGRMLHLIP 412
F A A + + TVF G+ + ++P
Sbjct: 159 FKDKNDAESARKEFNYTVFFGQEVKIMP 186
Score = 97 (39.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 677 SSNVAKQTGSK-ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
S+N++ SK ILV+N+P Q EV + F G +K V + +K + H+ F V +
Sbjct: 303 SNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTP-HKAF--VTY 359
Query: 736 ITKNEAKRAMKAL 748
+ E+K+A K L
Sbjct: 360 KNEEESKKAQKCL 372
Score = 80 (33.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/125 (21%), Positives = 58/125 (46%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
T+ +KNL ++T++ + +F GPI SV ++ K+ +P + FV + E
Sbjct: 314 TILVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQ-ANTPHK------AFVTYKNEEESK 366
Query: 642 QALKVLQNSSLDEHQIEL-KRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQS 700
+A K L + H I + ++ + ++ T K+ +K+ ++N+ F +
Sbjct: 367 KAQKCLNKTIFKNHTIWVGPGKDKPVHNQIGTNKK----------TKVYLKNLSFNCNKE 416
Query: 701 EVEEL 705
+ +L
Sbjct: 417 FISQL 421
Score = 76 (31.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+L+I NL TE+ +R+ FK+ S V R K S+GYG++ F +
Sbjct: 112 SLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKK-----SLGYGYLNFKDKNDAE 166
Query: 642 QALKVLQNSSLDEHQIELKRSNRN 665
A K + ++++ S +N
Sbjct: 167 SARKEFNYTVFFGQEVKIMPSMKN 190
Score = 63 (27.2 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 430 ISERKLDAFNQVVE-ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT--- 485
+ E +L A N + + ARSK I LVKNLP T ++ F G + V +
Sbjct: 295 VIEDELLASNNLSDNARSKTI-LVKNLPSDTTQEEVLDYFSTIGPIKSVFISEKQANTPH 353
Query: 486 -GLVEFLQKNQAKAAFNSLAYTKFKEVPLYL 515
V + + ++K A L T FK +++
Sbjct: 354 KAFVTYKNEEESKKAQKCLNKTIFKNHTIWV 384
Score = 46 (21.3 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 581 TTLYIKNLNFNSTEDSI 597
T +Y+KNL+FN ++ I
Sbjct: 402 TKVYLKNLSFNCNKEFI 418
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 638 ESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTV 673
E L+ L ++ N+SL+ +I K+ R ES TV
Sbjct: 625 ERLSHFL-LMTNTSLESQKILQKQVTRAAESLGFTV 659
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 146 (56.5 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 46/153 (30%), Positives = 77/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T+DS+R HF+K G + V R DP++ S G+GFV + E ++
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKR---SRGFGFVTYSCVEEVDA 91
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I ++ +
Sbjct: 92 AM-CARPHKVDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTEEYNL 142
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + + SG RGF FV F
Sbjct: 143 RDYFEKYGKIETIEVMEDRQ-SGKKRGFAFVTF 174
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L FEKYG + + + D+++
Sbjct: 105 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 163
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 164 GKKRGFAFVTF--DDHDT 179
Score = 66 (28.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ FE+ GT+TD V ++ + R F F+ Y ++ AA+
Sbjct: 44 FETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 99 (39.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 293 SKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDD 352
++ +SA+ GA D AS H S + A E ++F+ LS+ T+ D
Sbjct: 56 TEGSSAESEGAKID---ASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112
Query: 353 LTKLFEKYGPLAEVILPIDKETDKTKGFALVTF 385
L F K+G + + L +D T +++GF V F
Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Score = 95 (38.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 33/121 (27%), Positives = 53/121 (43%)
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTG 685
S G+GFV F ES++ KV+ EH+ L + KR + K+
Sbjct: 137 SRGFGFVLFKESESVD---KVMDQK---EHK---------LNGKVIDPKRAKAMKTKEPV 181
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
KI V + + ++ E F FGE++ + LP + RGF F+ F + K+ M
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIM 240
Query: 746 K 746
+
Sbjct: 241 E 241
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 146 (56.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 46/153 (30%), Positives = 77/153 (50%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L+F +T+DS+R HF+K G + V R DP++ S G+GFV + E ++
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKR---SRGFGFVTYSCVEEVDA 69
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEV 702
A+ + +D +E KR+ S +VK A T KI V I ++ +
Sbjct: 70 AM-CARPHKVDGRVVEPKRA----VSREDSVKPG----AHLTVKKIFVGGIKEDTEEYNL 120
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
+ F+ +G+++ + + + SG RGF FV F
Sbjct: 121 RDYFEKYGKIETIEVMEDRQ-SGKKRGFAFVTF 152
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 315 IKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKET 374
++ K S+EDSV+ + +IFV + E +L FEKYG + + + D+++
Sbjct: 83 VEPKRAVSREDSVKPGAHLTVK-KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 141
Query: 375 DKTKGFALVTFLMPEHAT 392
K +GFA VTF +H T
Sbjct: 142 GKKRGFAFVTF--DDHDT 157
Score = 66 (28.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 27 YKITQEQLKAKFEEKGTVTD-VQLKYTTEGKFRRFAFIGYHREDQAQAAL 75
++ T + L+ FE+ GT+TD V ++ + R F F+ Y ++ AA+
Sbjct: 22 FETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 71
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 121 (47.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 43/189 (22%), Positives = 82/189 (43%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPLPLASVRT-----TFLGMAYIGFKDEKNCNKALNKNK 279
HT+ NLP VK D + + L + + F + ++ + N+ +
Sbjct: 170 HTLPGSNLPIIVKFADTERQKRKKLLGNQQPPQNPFNFYQQNQQQQQQQQQQQQQQNQYQ 229
Query: 280 SFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRI 339
F+ G+ + + +N + + N M+ +A + Q+ Q + ES +
Sbjct: 230 PFFYGQNSQMSQAMGNNGYRGYQQQPNVNFGMMQGNQAFDYNQQQQQQQQQQQPNESNDL 289
Query: 340 FVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLD 399
F+ L +T +++L +LF YG + + IDK T ++K F V++ + A A Q L+
Sbjct: 290 FIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELN 349
Query: 400 GTVFLGRML 408
G G+ L
Sbjct: 350 GRAIEGKKL 358
Score = 101 (40.6 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+FV ++ ++ E+ ++++F K+G + ++ + DK T+ +KG A +TF E A A
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 399 D--GTVFLGRMLHLIPGKPKENE 419
+ GT FL M + K +NE
Sbjct: 80 NESGT-FLENMNKPLQVKYSDNE 101
Score = 81 (33.6 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L S ED IR F G I + + R+KD K P GYGF+++ TR+
Sbjct: 109 LFIGMLG-TSDEDQIRILFGNYGIIEDLNIVREKDGK-P-----KGYGFIKYSTRDESEN 161
Query: 643 ALK 645
AL+
Sbjct: 162 ALR 164
Score = 52 (23.4 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGEL--KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + +PF E+++LF +G + V + K S + FGFV + A A+
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQS---KCFGFVSYDNTQSAIAAI 345
Query: 746 KALCQSTHLYGRRLVLEWAEE 766
+ L + G++L + + E
Sbjct: 346 QEL-NGRAIEGKKLKVNFKRE 365
Score = 44 (20.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 29 ITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84
+ +E + F + G + D+ + K + AFI + +++A AL+ N + F
Sbjct: 29 MNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTTNESGTF 85
WARNING: HSPs involving 691 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 787 718 0.00085 121 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 941
No. of states in DFA: 616 (65 KB)
Total size of DFA: 356 KB (2177 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 69.88u 0.09s 69.97t Elapsed: 00:00:37
Total cpu time: 70.03u 0.09s 70.12t Elapsed: 00:00:41
Start: Thu Aug 15 13:18:02 2013 End: Thu Aug 15 13:18:43 2013
WARNINGS ISSUED: 2