RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3345
(787 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 88.1 bits (218), Expect = 1e-21
Identities = 66/90 (73%), Positives = 73/90 (81%)
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
KQT SKILVRNIPFQA Q E+ ELF FGELK VRLPKKM G+G HRGFGFV+FITK +A
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 742 KRAMKALCQSTHLYGRRLVLEWAEEADNVE 771
K+A ALC STHLYGRRLVLEWA+ V+
Sbjct: 65 KKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 68.8 bits (168), Expect = 6e-15
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKE-TDKTKGFALVTFLMPEHATQ 393
+ +I VRN+ + + ++ +LF +G L V LP T +GF V F+ + A +
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 394 AYQHL-DGTVFLGRMLHLIPGKPKE 417
A+ L T GR L L +
Sbjct: 67 AFNALCHSTHLYGRRLVLEWADSEV 91
Score = 65.7 bits (160), Expect = 7e-14
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
+ + + + ++N+ F + + IR F G + +V + +K G+GFV F
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA----HRGFGFVDFI 59
Query: 636 TRESLNQALKVLQNSS-LDEHQIELKRSNRNLESE 669
T++ +A L +S+ L ++ L+ ++ + +
Sbjct: 60 TKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 45.3 bits (107), Expect = 1e-06
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 440 QVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-------PYGITGLVEFLQ 492
QV + ++ ILV+N+P++ +++ LF FG+L V +P + G V+F+
Sbjct: 1 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 60
Query: 493 KNQAKAAFNSLAY-TKFKEVPLYLEWA 518
K AK AFN+L + T L LEWA
Sbjct: 61 KQDAKKAFNALCHSTHLYGRRLVLEWA 87
Score = 41.8 bits (98), Expect = 1e-05
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQL--KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVF 84
++ Q +++ F G + V+L K T G R F F+ + + A+ A + ++
Sbjct: 18 FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 77
Query: 85 SSR-IKVEKCSN 95
R + +E +
Sbjct: 78 YGRRLVLEWADS 89
Score = 38.8 bits (90), Expect = 2e-04
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKP--------LPLASVRT-TFLGMAYIGFKDEKNC 271
K+ I+V+N+P +++++ F LP T G ++ F +++
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 272 NKALNK--NKSFWKGKQLNIYKYSKDNSAK 299
KA N + + G++L + +++
Sbjct: 65 KKAFNALCHSTHLYGRRLVL-EWADSEVTV 93
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 82.7 bits (203), Expect = 9e-19
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
+EPE L+I L+F +T++S+R HF++ G + V R + K G+GFV +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS-----RGFGFVTY 55
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQTGSKILVRNIP 694
T E ++ A+ + +D +E KR+ + A T KI V I
Sbjct: 56 ATVEEVDAAMN-ARPHKVDGRVVEPKRAVSR--------EDSQRPGAHLTVKKIFVGGIK 106
Query: 695 FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHL 754
++ + + F+ +G+++ + + GSG RGF FV F + + + + +
Sbjct: 107 EDTEEHHLRDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTFDDHDSVDKIVIQ--KYHTV 163
Query: 755 YGRRLVLEWAE 765
G + A
Sbjct: 164 NGHNCEVRKAL 174
Score = 70.0 bits (170), Expect = 2e-14
Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 25/202 (12%)
Query: 216 KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGMAYIGFKDEKNCNKAL 275
K P R + + L + L+++F+ + +C
Sbjct: 1 KEPEQLR---KLFIGGLSFETTDESLRSHFEQ-----------------WGTLTDCVVMR 40
Query: 276 NKNKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKHWKSQEDSVQFAEDIAE 335
+ N +G Y ++ A A + + + + Q
Sbjct: 41 DPNTKRSRGFGFVTYATVEEVDA----AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLT 96
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+IFV + E L FE+YG + + + D+ + K +GFA VTF + +
Sbjct: 97 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Query: 396 QHLDGTVFLGRMLHLIPGKPKE 417
G + K+
Sbjct: 157 I-QKYHTVNGHNCEVRKALSKQ 177
Score = 57.3 bits (137), Expect = 5e-10
Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 27/187 (14%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++F+ LS+ T++ L FE++G L + ++ D T +++GF VT+ E A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 65
Query: 398 LDGTVFLGRMLHLIPGKPKENEGNVDGKVHCCISERKLDAFNQVVEARSKRIILVKNLPY 457
VDG+V + + + + I V +
Sbjct: 66 ------------------NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKE 107
Query: 458 RTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFNSLAYTKFKEV 511
T L+ FE +G + + + +G V F + Y
Sbjct: 108 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGH 166
Query: 512 PLYLEWA 518
+ A
Sbjct: 167 NCEVRKA 173
Score = 51.5 bits (122), Expect = 4e-08
Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 48/230 (20%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 502
E R + + L + T L++ FE +G L +V T
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK---------------- 45
Query: 503 LAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGV 562
+S+G E +
Sbjct: 46 --------------------------RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 79
Query: 563 PEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPG 622
+ +++ + ++ E +R +F++ G I + + +
Sbjct: 80 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK- 138
Query: 623 QFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATT 672
G+ FV F +S+++ + + +++ H E++++ E + +
Sbjct: 139 ----RGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS 183
Score = 33.8 bits (76), Expect = 0.043
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 25 FIYKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
+ L+ FE+ G + +++ GK R FAF+ + D + V
Sbjct: 105 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV 163
Query: 84 FSSRIKVEK 92
+V K
Sbjct: 164 NGHNCEVRK 172
Score = 31.9 bits (71), Expect = 0.18
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTE-GKFRRFAFIGYHREDQAQAALDYFNNTY 82
++ T E L++ FE+ GT+TD + + R F F+ Y ++ AA++ +
Sbjct: 16 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 72
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 70.7 bits (173), Expect = 9e-16
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
++V +L VTE L + F GP+ + + D T ++ G+A V F P A +A +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 399 DGTVFLGRMLHL 410
+ V G+ + +
Sbjct: 63 NFDVIKGKPVRI 74
Score = 67.6 bits (165), Expect = 9e-15
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+LY+ +L+ + TE + F GPI S+ V + S+GY +V F
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-----CRDMITRRSLGYAYVNFQQPADAE 56
Query: 642 QALKVLQNSSLDEHQIELKRSNRN 665
+AL + + + + S R+
Sbjct: 57 RALDTMNFDVIKGKPVRIMWSQRD 80
Score = 61.5 bits (149), Expect = 1e-12
Identities = 14/79 (17%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ V ++ ++ + E F G + +R+ + M+ + G+ +V F +A+RA+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLGYAYVNFQQPADAERALD 60
Query: 747 ALCQSTHLYGRRLVLEWAE 765
+ + G+ + + W++
Sbjct: 61 TM-NFDVIKGKPVRIMWSQ 78
Score = 46.8 bits (111), Expect = 2e-07
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 503
+ V +L L F P G + + V IT V F Q A+ A +++
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 504 AYTKFKEVPLYLEWA 518
+ K P+ + W+
Sbjct: 63 NFDVIKGKPVRIMWS 77
Score = 43.0 bits (101), Expect = 4e-06
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQL-KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
+T+ L KF G + +++ + + +A++ + + A+ ALD N +
Sbjct: 10 PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 69
Query: 86 SRIKVEK 92
+++
Sbjct: 70 KPVRIMW 76
Score = 38.7 bits (90), Expect = 2e-04
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
++ V +L V + L F P + + LG AY+ F+ + +AL+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 278 -NKSFWKGKQLNIYKYSKD 295
N KGK + I +D
Sbjct: 62 MNFDVIKGKPVRIMWSQRD 80
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 70.5 bits (172), Expect = 2e-15
Identities = 51/85 (60%), Positives = 63/85 (74%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
+ SGR+FVRNLSYT +E+DL KLF YGPL+E+ PID T K KGFA VTF+ PEHA +
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 394 AYQHLDGTVFLGRMLHLIPGKPKEN 418
AY +DG VF GRMLH++P K+
Sbjct: 66 AYAEVDGQVFQGRMLHVLPSTIKKE 90
Score = 53.6 bits (128), Expect = 2e-09
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYT 636
L+++NL++ S+E+ + + F GP++ + G+ FV F
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-----TKKPKGFAFVTFMF 59
Query: 637 RESLNQALKVLQNSSLDEHQIELKRSNRNLESE 669
E +A + + + S E+
Sbjct: 60 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92
Score = 48.9 bits (116), Expect = 6e-08
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
++ VRN+ + + + ++E+LF A+G L + P + +GF FV F+ A +A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK-PKGFAFVTFMFPEHAVKAY 67
Query: 746 KALCQSTHLYGRRLVLEWAEE 766
+ GR L + +
Sbjct: 68 AEV-DGQVFQGRMLHVLPSTI 87
Score = 35.8 bits (82), Expect = 0.003
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSL 503
+ V+NL Y + DL+ LF +G L + P V F+ A A+ +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 504 AYTKFKEVPLYLEWA 518
F+ L++ +
Sbjct: 71 DGQVFQGRMLHVLPS 85
Score = 33.9 bits (77), Expect = 0.013
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 226 TIVVKNLPAGVKKKDLKAYFK--------PLPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
+ V+NL ++DL+ F P+ S+ G A++ F ++ KA +
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 278 -NKSFWKGKQLNIYKYSKDNSAKYSGAA 304
+ ++G+ L++ + A SG +
Sbjct: 70 VDGQVFQGRMLHVLPSTIKKEASQSGPS 97
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 68.8 bits (168), Expect = 6e-15
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+ +S ++V NLS+ TE+ + +LF K G + ++I+ +DK GF V + A
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 63
Query: 393 QAYQHLDGTVFLGRMLHL 410
A ++++GT R++
Sbjct: 64 NAMRYINGTRLDDRIIRT 81
Score = 56.1 bits (135), Expect = 2e-10
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 742
+ + V N+ F + ++ ELF G++K + + + GF FVE+ ++ +A+
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-KKTACGFCFVEYYSRADAE 63
Query: 743 RAMKALCQSTHLYGRRLVLEWA 764
AM+ + T L R + +W
Sbjct: 64 NAMRYI-NGTRLDDRIIRTDWD 84
Score = 55.7 bits (134), Expect = 2e-10
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ 633
E+ + TLY+ NL+F +TE+ I F K G I + + K K+ G+ FV+
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTA-----CGFCFVE 55
Query: 634 FYTRESLNQALKVLQNSSLDEHQIEL 659
+Y+R A++ + + LD+ I
Sbjct: 56 YYSRADAENAMRYINGTRLDDRIIRT 81
Score = 40.3 bits (94), Expect = 6e-05
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPP------YGITGLVEFLQKNQAKAAFNSL 503
+ V NL + T + LF GD+ ++++ VE+ + A+ A +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 504 AYTKFKEVPLYLEWAP 519
T+ + + +W
Sbjct: 70 NGTRLDDRIIRTDWDA 85
Score = 38.8 bits (90), Expect = 2e-04
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKY-TTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
+ T+EQ+ F + G + + + + F F+ Y+ A+ A+ Y N T +
Sbjct: 17 FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 76
Query: 86 SRIKVE 91
I+ +
Sbjct: 77 RIIRTD 82
Score = 33.4 bits (76), Expect = 0.019
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKPL--------PLASVRTTFLGMAYIGFKDEKNCNK 273
++ T+ V NL ++ + F L ++ T G ++ + +
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 274 ALNK-NKSFWKGKQLNI 289
A+ N + + +
Sbjct: 65 AMRYINGTRLDDRIIRT 81
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 68.5 bits (167), Expect = 6e-15
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
++ I V NLS E DL +LF +G ++ + L DK T ++KGFA ++F E A +A
Sbjct: 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
+ G + +L++ KP N
Sbjct: 67 IAGVSGFGYDHLILNVEWAKPSTN 90
Score = 52.7 bits (126), Expect = 2e-09
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
R + + T+ + NL+ ++ E ++ F+ G I+ + +A+ K S G+ F+ F
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT-----GQSKGFAFISF 57
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRS 662
+ RE +A+ + D + ++ +
Sbjct: 58 HRREDAARAIAGVSGFGYDHLILNVEWA 85
Score = 47.7 bits (113), Expect = 1e-07
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ I V N+ ++++++ELF+ FG + + K +G +GF F+ F + +A RA+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIY-LAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 746 KALCQSTHLYGRRLVLEWAEEADN 769
+ L +EWA+ + N
Sbjct: 68 AGV-SGFGYDHLILNVEWAKPSTN 90
Score = 38.5 bits (89), Expect = 2e-04
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 496
A I V NL T TDL+ LF PFG + R+ + T + F ++ A
Sbjct: 4 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDA 63
Query: 497 KAAFNSLAYTKFKEVPLYLEWA 518
A ++ + + L +EWA
Sbjct: 64 ARAIAGVSGFGYDHLILNVEWA 85
Score = 33.1 bits (75), Expect = 0.022
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
TI V NL ++ DL+ F+P L G A+I F ++ +A+
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 69
Query: 278 -NKSFWKGKQLNIYKYSK 294
+ + LN+ +++K
Sbjct: 70 VSGFGYDHLILNV-EWAK 86
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 68.0 bits (166), Expect = 6e-15
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 337 GRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
G++ V NL + V++ D+ +LF ++G L + + D+ + ++ G A V F A +A +
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 59
Query: 397 HLDGTVFLGRMLHL 410
+G GR +++
Sbjct: 60 QYNGVPLDGRPMNI 73
Score = 58.4 bits (141), Expect = 2e-11
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+LV N+ F ++++ELF FG LK + SG G V F K +A +AMK
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMK 59
Query: 747 ALCQSTHLYGRRLVLEWA 764
L GR + ++
Sbjct: 60 QY-NGVPLDGRPMNIQLV 76
Score = 54.6 bits (131), Expect = 4e-10
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L + NL+F ++ I+ F + G + V + + S+G V F + +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR------SLGTADVHFERKADALK 56
Query: 643 ALKVLQNSSLDEHQIELK 660
A+K LD + ++
Sbjct: 57 AMKQYNGVPLDGRPMNIQ 74
Score = 46.8 bits (111), Expect = 2e-07
Identities = 11/65 (16%), Positives = 28/65 (43%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ ++ ++ F E GT+ + Y G+ A + + R+ A A+ +N +
Sbjct: 10 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 69
Query: 87 RIKVE 91
+ ++
Sbjct: 70 PMNIQ 74
Score = 43.0 bits (101), Expect = 4e-06
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFNSLA 504
+LV NL + D++ LF FG L + V T V F +K A A
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 505 YTKFKEVPLYLEWAP 519
P+ ++
Sbjct: 63 GVPLDGRPMNIQLVT 77
Score = 35.3 bits (81), Expect = 0.003
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLP-------LASVRTTFLGMAYIGFKDEKNCNKALNK-N 278
++V NL GV D++ F LG A + F+ + + KA+ + N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 279 KSFWKGKQLNI 289
G+ +NI
Sbjct: 63 GVPLDGRPMNI 73
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 67.0 bits (163), Expect = 2e-14
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
I V+N+ +TV+ D++ F Y + + E G A+V F + AT A
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 396 QHLDGTVFLGRMLHL 410
L+ R + L
Sbjct: 69 IDLNDRPIGSRKVKL 83
Score = 53.9 bits (129), Expect = 7e-10
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
+P P T + ++N+ F + D I F I + + + + G V F
Sbjct: 6 KPGP-TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-----KGMPTGEAMVAFE 59
Query: 636 TRESLNQALKVLQNSSLDEHQIELK 660
+R+ A+ L + + +++L
Sbjct: 60 SRDEATAAVIDLNDRPIGSRKVKLV 84
Score = 50.4 bits (120), Expect = 1e-08
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 678 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 737
++ K + I V+N+PF E+ + F + + K G+ G V F +
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFES 60
Query: 738 KNEAKRAMKALCQSTHLYGRRLVLEWA 764
++EA A+ L + R++ L
Sbjct: 61 RDEATAAVIDL-NDRPIGSRKVKLVLG 86
Score = 35.8 bits (82), Expect = 0.002
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 27 YKITQEQLKAKFEEKG-TVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
+ ++ +++ F V LKY +G A + + D+A AA+ N+ + S
Sbjct: 19 FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 78
Query: 86 SRIKVE 91
++K+
Sbjct: 79 RKVKLV 84
Score = 32.7 bits (74), Expect = 0.022
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 499
II V+N+P+ ++ F + + + Y G +V F +++A AA
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 500 FNSLAYTKFKEVPLYLEWA 518
L + L
Sbjct: 68 VIDLNDRPIGSRKVKLVLG 86
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 66.5 bits (162), Expect = 3e-14
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
E I ++ ++V NL T+T+D L +F KYG + + + DK T + +G A V + E
Sbjct: 2 ESIKDT-NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 391 ATQAYQHLDGTVFLGR 406
A +A L+ + G
Sbjct: 61 AQEAISALNNVIPEGG 76
Score = 60.0 bits (145), Expect = 6e-12
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
E DT LY+ NL T+D + F K G I +K + G FV++
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSI-----VQKNILRDKLTGRPRGVAFVRYN 56
Query: 636 TRESLNQALKVLQNSSLDEHQIELK 660
RE +A+ L N + L
Sbjct: 57 KREEAQEAISALNNVIPEGGSQPLS 81
Score = 54.6 bits (131), Expect = 4e-10
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
+ + V N+P +++ +F +G + + +G RG FV + + EA+ A
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN-ILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 745 MKALCQST-HLYGRRLVLEWA 764
+ AL + L + A
Sbjct: 65 ISALNNVIPEGGSQPLSVRLA 85
Score = 41.1 bits (96), Expect = 3e-05
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 496
E+ + V NLP L +F +G + + + +T V + ++ +A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 497 KAAFNSLAYTKFK--EVPLYLEWA 518
+ A ++L + PL + A
Sbjct: 62 QEAISALNNVIPEGGSQPLSVRLA 85
Score = 40.3 bits (94), Expect = 4e-05
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALDYFNNTYVF- 84
IT +QL F + G++ + R AF+ Y++ ++AQ A+ NN
Sbjct: 16 RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 75
Query: 85 -SSRIKVE 91
S + V
Sbjct: 76 GSQPLSVR 83
Score = 31.8 bits (72), Expect = 0.047
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
+ V NLP + L F + + G+A++ + + +A++
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 278 -NKSFWKGKQLNIY 290
N +G +
Sbjct: 68 LNNVIPEGGSQPLS 81
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 66.2 bits (161), Expect = 3e-14
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKE---TDKTKGFALVTFLMPEHATQAY 395
+F++NL+++ TE+ L +F K G + + K + GF V + PE A +A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 396 QHLDGTVFLGRMLHLIPGKPKE 417
+ L G G L + +
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
Score = 62.4 bits (151), Expect = 1e-12
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+IKNLNF++TE++++ F K G I S T+++KK+ MG+GFV++ E +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLS--MGFGFVEYKKPEQAQK 58
Query: 643 ALKVLQNSSLDEHQIELKRSNR 664
ALK LQ ++D H++E++ S R
Sbjct: 59 ALKQLQGHTVDGHKLEVRISER 80
Score = 59.3 bits (143), Expect = 1e-11
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP--KKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ ++N+ F + ++ +F G +K + K G L GFGFVE+ +A++A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 746 KALCQSTHLYGRRLVLEWAEEAD 768
K L Q + G +L + +E A
Sbjct: 61 KQL-QGHTVDGHKLEVRISERAT 82
Score = 43.5 bits (102), Expect = 3e-06
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQL----KYTTEGKFRRFAFIGYHREDQAQAALDYFNNTY 82
+ T+E LK F + G + + F F+ Y + +QAQ AL
Sbjct: 8 FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 67
Query: 83 VFSSRIKVEK 92
V +++V
Sbjct: 68 VDGHKLEVRI 77
Score = 40.8 bits (95), Expect = 4e-05
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP---------PYGITGLVEFLQKNQAKAAF 500
+ +KNL + T LK +F G + + G VE+ + QA+ A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 501 NSLAYTKFKEVPLYLEWA 518
L L + +
Sbjct: 61 KQLQGHTVDGHKLEVRIS 78
Score = 33.1 bits (75), Expect = 0.015
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPL-----------PLASVRTTFLGMAYIGFKDEKNCNKAL 275
+ +KNL ++ LK F + + +G ++ +K + KAL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 276 NK-NKSFWKGKQLNIYKYSKDNS 297
+ G +L + + S+ +
Sbjct: 61 KQLQGHTVDGHKLEV-RISERAT 82
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 66.3 bits (161), Expect = 4e-14
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 334 AESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQ 393
++ G++FV LS+ E L ++F KYG ++EV++ D+ET +++GF VTF + A
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 394 AYQHLDGTVFLGRMLHLIPGKPKEN 418
A ++G GR + + +
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSD 87
Score = 45.1 bits (106), Expect = 1e-06
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+ L++ L+F++ E S+ + F K G I + K S G+GFV F +
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQI-----SEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 640 LNQALKVLQNSSLDEHQIELKRSNR 664
A+ + S+D QI + ++ +
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQAGK 84
Score = 44.7 bits (105), Expect = 1e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+ V + F + +E++F +G++ V K + RGFGFV F ++AK AM
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVV-VVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 747 ALCQSTHLYGRRLVLEWAEE 766
A+ + GR++ ++ A +
Sbjct: 66 AM-NGKSVDGRQIRVDQAGK 84
Score = 31.6 bits (71), Expect = 0.065
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GMAYIGFKDEKNCNKALN 276
+ V L ++ L+ F S G ++ F++ + A+
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 277 K-NKSFWKGKQLNIYKYSKDNSAK 299
N G+Q+ + + K + +
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSDNR 89
Score = 30.9 bits (69), Expect = 0.12
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAK 497
A + + V L + T L+ +F +G + V+V T G V F + AK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 498 AAFNSLAYTKFKEVPLYLEWA 518
A ++ + ++ A
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA 82
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 66.3 bits (161), Expect = 6e-14
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP--------IDKETDKTKGFAL 382
++ +++ I+V+ L+ +VT DDL F++ G + +DKET K KG A
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 383 VTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGN 421
V++ P A A + DG F G L + + K +
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 101
Score = 54.8 bits (131), Expect = 6e-10
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARK---KDPKSPGQFLSMGYGFV 632
E ++ +Y++ LN + T D + FK+CG + + G V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNRN 665
+ + A++ ++++ + +
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
Score = 45.9 bits (108), Expect = 8e-07
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV-------GSGLHRGFGFVEFIT 737
S I V+ + ++ + FK G +K + + + +G +G V +
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 67
Query: 738 KNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
AK A++ G +L + A +
Sbjct: 68 PPTAKAAVEWF-DGKDFQGSKLKVSLARK 95
Score = 33.2 bits (75), Expect = 0.020
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRR---------FAFIGYHREDQAQAALDY 77
+T + L F++ G V + A + Y A+AA+++
Sbjct: 18 DSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 77
Query: 78 FNNTYVFSSRIKVEK 92
F+ S++KV
Sbjct: 78 FDGKDFQGSKLKVSL 92
Score = 33.2 bits (75), Expect = 0.026
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 14/90 (15%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY--------------GITGLV 488
E I V+ L DL F+ G + V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 489 EFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ AKAA F+ L + A
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 93
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 65.4 bits (159), Expect = 7e-14
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+ V L +T+ +L LF GP+ + D +T + G+A V F + +A +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 398 LDGTVFLGRMLHLIPGKP 415
L+G + L + +P
Sbjct: 64 LNGITVRNKRLKVSYARP 81
Score = 57.7 bits (139), Expect = 3e-11
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+T L + L + T+ + F+ GPI + + R S GY FV F +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY-----SYGYAFVDFTSEMD 56
Query: 640 LNQALKVLQNSSLDEHQIELKRS 662
+A+KVL ++ ++++ +
Sbjct: 57 SQRAIKVLNGITVRNKRLKVSYA 79
Score = 55.4 bits (133), Expect = 2e-10
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 684 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 743
+ + ++V +P E+ LF+A G + R+ + +G G+ FV+F ++ +++R
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-TGYSYGYAFVDFTSEMDSQR 59
Query: 744 AMKALCQSTHLYGRRLVLEWA 764
A+K L + +RL + +A
Sbjct: 60 AIKVL-NGITVRNKRLKVSYA 79
Score = 45.8 bits (108), Expect = 6e-07
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 499
S ++V LP +L ALF G + + TG V+F + ++ A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 500 FNSLAYTKFKEVPLYLEWAPEG 521
L + L + +A G
Sbjct: 61 IKVLNGITVRNKRLKVSYARPG 82
Score = 40.8 bits (95), Expect = 3e-05
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 27 YKITQEQLKAKFEEKGTVTDV-QLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
+T +L A F G + ++ G +AF+ + E +Q A+ N V +
Sbjct: 12 QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 71
Query: 86 SRIKVEK 92
R+KV
Sbjct: 72 KRLKVSY 78
Score = 34.2 bits (78), Expect = 0.007
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
++V LP + ++L A F+ + G A++ F E + +A+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 278 -NKSFWKGKQLNIYKYSK 294
N + K+L + Y++
Sbjct: 64 LNGITVRNKRLKV-SYAR 80
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 65.1 bits (158), Expect = 7e-14
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+ V LS TE DL ++F KYGP+A+V + D+++ +++GFA V F + A +A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 398 LDGTVFLGRMLH 409
+G GR +
Sbjct: 71 ANGMELDGRRIR 82
Score = 57.0 bits (137), Expect = 6e-11
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
P+P+ L + L+ +TE +R F K GPIA V++ + S G+ FV F
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----SRRSRGFAFVYFE 59
Query: 636 TRESLNQALKVLQNSSLDEHQIE 658
+ +A + LD +I
Sbjct: 60 NVDDAKEAKERANGMELDGRRIR 82
Score = 44.3 bits (104), Expect = 2e-06
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
+ V + + ++ E+F +G + V + S RGF FV F ++AK A
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-SRRSRGFAFVYFENVDDAKEA 67
Query: 745 MKALCQSTHLYGRRL 759
+ L GRR+
Sbjct: 68 KERA-NGMELDGRRI 81
Score = 33.9 bits (77), Expect = 0.009
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 501
+ V L T DL+ +F +G + V + + V F + AK A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 502 SLAYTKFKEVPLY 514
+ +
Sbjct: 70 RANGMELDGRRIR 82
Score = 32.0 bits (72), Expect = 0.039
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTF--------LGMAYIGFKDEKNCNKALN 276
+ V L ++DL+ F + + G A++ F++ + +A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 277 K-NKSFWKGKQLNI 289
+ N G+++ +
Sbjct: 70 RANGMELDGRRIRV 83
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 65.5 bits (159), Expect = 8e-14
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++V L T+T+ +L +LF +YG + + +D+ T ++G + F A +A +
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 398 LDGTVFLGRMLHL 410
L+G G +
Sbjct: 68 LNGQKPSGATEPI 80
Score = 57.0 bits (137), Expect = 7e-11
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
D LY+ L T+ + + F + G I + + + +S G GF++F R
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-----TGVSRGVGFIRFDKRIE 60
Query: 640 LNQALKVLQNSSLDEHQIELK 660
+A+K L +
Sbjct: 61 AEEAIKGLNGQKPSGATEPIT 81
Score = 50.4 bits (120), Expect = 2e-08
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
+ + V +P Q E+E+LF +G + R+ V RG GF+ F + EA+ A
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV-SRGVGFIRFDKRIEAEEA 64
Query: 745 MKALCQSTHLYGR--RLVLEWA 764
+K L G + +++A
Sbjct: 65 IKGL-NGQKPSGATEPITVKFA 85
Score = 35.0 bits (80), Expect = 0.004
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 503
+ V LP +L+ LF +G + + +T G + F ++ +A+ A L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 504 AYTKF--KEVPLYLEWA 518
K P+ +++A
Sbjct: 69 NGQKPSGATEPITVKFA 85
Score = 34.6 bits (79), Expect = 0.005
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALDYFNNTYVF- 84
+TQ++L+ F + G + ++ R FI + + +A+ A+ N
Sbjct: 16 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 75
Query: 85 -SSRIKVE 91
+ I V+
Sbjct: 76 ATEPITVK 83
Score = 33.5 bits (76), Expect = 0.011
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLP--------LASVRTTFLGMAYIGFKDEKNCNKALNK 277
+ V LP + +K+L+ F + V G+ +I F +A+
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 278 -NKSFWKGKQLNI 289
N G I
Sbjct: 68 LNGQKPSGATEPI 80
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 65.8 bits (160), Expect = 8e-14
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 328 QFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLM 387
+ + ++ +F L+ + DL F G + +V + D+ + ++KG A V F
Sbjct: 10 NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 69
Query: 388 PEHATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
+ L G LG + + + ++N
Sbjct: 70 IQSV-PLAIGLTGQRLLGVPIIVQASQAEKN 99
Score = 48.9 bits (116), Expect = 6e-08
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 570 EEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGY 629
++ E T++ L + F G + V + ++ S G
Sbjct: 8 VDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-----SRRSKGI 62
Query: 630 GFVQFYTRESLNQALKVLQNSSLDEHQIELKRSN 663
+V+F +S+ A+ L L I ++ S
Sbjct: 63 AYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQ 95
Score = 43.5 bits (102), Expect = 5e-06
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ + + + ++E+ F A G+++ VR+ S +G +VEF A+
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-SRRSKGIAYVEFCEIQSVPLAIG 78
Query: 747 ALCQSTHLYGRRLVLEWAEEADN 769
L G ++++ ++ N
Sbjct: 79 --LTGQRLLGVPIIVQASQAEKN 99
Score = 36.5 bits (84), Expect = 0.002
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 209 PSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT-------FLGM 260
P PV +R T+ L A ++ +DL+ +F + + VR G+
Sbjct: 3 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 261 AYIGFKDEKNCNKALNKNKSFWKGKQLNI 289
AY+ F + ++ A+ G + +
Sbjct: 63 AYVEFCEIQSVPLAIGLTGQRLLGVPIIV 91
Score = 31.9 bits (72), Expect = 0.055
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 496
E R R + L R P DL+ F G + V + + VEF +
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73
Query: 497 KAAFNSLAYTKFKEVPLYLEWA 518
L + VP+ ++ +
Sbjct: 74 P-LAIGLTGQRLLGVPIIVQAS 94
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 65.3 bits (159), Expect = 1e-13
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 338 RIFVRNLS-YTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQ 396
R+F+ NL+ V + D+ +F KYG + KGFA V ++ +A A
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGC--------SVHKGFAFVQYVNERNARAAVA 68
Query: 397 HLDGTVFLGRMLHLIPGKPKEN 418
DG + G++L + +
Sbjct: 69 GEDGRMIAGQVLDINLAAEPKV 90
Score = 61.4 bits (149), Expect = 2e-12
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 682 KQTGSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
+ S++ + N+ K+S+VE +F +G++ + H+GF FV+++ +
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---------HKGFAFVQYVNERN 62
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEE 766
A+ A+ + G+ L + A E
Sbjct: 63 ARAAVAGE-DGRMIAGQVLDINLAAE 87
Score = 55.6 bits (134), Expect = 2e-10
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 576 EPEPDTTLYIKNLNFNSTEDS-IRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
++ ++I NLN + S + F K G I +V G+ FVQ+
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-------------HKGFAFVQY 57
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRSNR 664
+ A+ + +++ +
Sbjct: 58 VNERNARAAVAGEDGRMIAGQVLDINLAAE 87
Score = 42.9 bits (101), Expect = 7e-06
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ + ++A F + G + + FAF+ Y E A+AA+ + +
Sbjct: 26 LVVKKSDVEAIFSKYGKIVGCSVHK-------GFAFVQYVNERNARAAVAGEDGRMIAGQ 78
Query: 87 RIKVEK 92
+ +
Sbjct: 79 VLDINL 84
Score = 40.2 bits (94), Expect = 7e-05
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 450 ILVKNL-PYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKF 508
+ + NL +D++A+F +G + V V+++ + A+AA
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG--FAFVQYVNERNARAAVAGEDGRMI 75
Query: 509 KEVPLYLEWAPE 520
L + A E
Sbjct: 76 AGQVLDINLAAE 87
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 64.7 bits (157), Expect = 1e-13
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+ ++F+ L + +D + +L +GPL L D T +KG+A ++ QA
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Query: 396 QHLDGTVFLGRMLHLIPGKPKEN 418
L+G + L +
Sbjct: 61 AGLNGMQLGDKKLLVQRASVGAK 83
Score = 53.1 bits (127), Expect = 1e-09
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+ + +P +V+EL +FG LK K +GL +G+ F E++ N +A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFN-LVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 747 ALCQSTHLYGRRLVLEWAE 765
L L ++L+++ A
Sbjct: 62 GL-NGMQLGDKKLLVQRAS 79
Score = 50.4 bits (120), Expect = 1e-08
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
L+I L +D ++ GP+ + K LS GY F ++ +Q
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAF-----NLVKDSATGLSKGYAFCEYVDINVTDQ 58
Query: 643 ALKVLQNSSLDEHQIELKRSN 663
A+ L L + ++ ++R++
Sbjct: 59 AIAGLNGMQLGDKKLLVQRAS 79
Score = 37.3 bits (86), Expect = 6e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 27 YKITQEQLK---AKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYV 83
+ +Q+K F V+ T + +AF Y + A+ N +
Sbjct: 11 NYLNDDQVKELLTSFGPLKAFNLVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQL 68
Query: 84 FSSRIKVEK 92
++ V++
Sbjct: 69 GDKKLLVQR 77
Score = 37.3 bits (86), Expect = 6e-04
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 503
+ + LP +K L FG L + T E++ N A L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 504 AYTKFKEVPLYLEWAPEG 521
+ + L ++ A G
Sbjct: 64 NGMQLGDKKLLVQRASVG 81
Score = 31.9 bits (72), Expect = 0.039
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPLP--------LASVRTTFLGMAYIGFKDEKNCNKALN 276
H + + LP + +K S G A+ + D ++A+
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 277 K-NKSFWKGKQLNI 289
N K+L +
Sbjct: 62 GLNGMQLGDKKLLV 75
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 64.3 bits (156), Expect = 2e-13
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 333 IAESGR-IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
+A + R ++V L+ V + L F +G + ++ +P+D ET+K +GFA V F + E A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 392 TQAYQHLDGTVFLGRMLHLIPGKPKEN 418
A +++ + GR + + KP
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRI 87
Score = 49.3 bits (117), Expect = 4e-08
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
LY+ L + + F G I + P G+ FV+F E
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD-----IQIPLDYETEKHRGFAFVEFELAE 58
Query: 639 SLNQALKVLQNSSLDEHQIELKRS 662
A+ + S L I + +
Sbjct: 59 DAAAAIDNMNESELFGRTIRVNLA 82
Score = 46.2 bits (109), Expect = 4e-07
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 742
T + V + + + F FG++ +++P + HRGF FVEF +A
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-TEKHRGFAFVEFELAEDAA 61
Query: 743 RAMKALCQSTHLYGRRLVLEWAE 765
A+ + + L+GR + + A+
Sbjct: 62 AAIDNM-NESELFGRTIRVNLAK 83
Score = 43.1 bits (101), Expect = 5e-06
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 444 ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAK 497
A +KR++ V L L A F PFGD+ + +P T VEF A
Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 498 AAFNSLAYTKFKEVPLYLEWA 518
AA +++ ++ + + A
Sbjct: 62 AAIDNMNESELFGRTIRVNLA 82
Score = 30.0 bits (67), Expect = 0.21
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
+ V L V K L A F P +PL G A++ F+ ++ A++
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 278 -NKSFWKGKQLNIYKYSKDNSAK 299
N+S G+ + + +K K
Sbjct: 67 MNESELFGRTIRV-NLAKPMRIK 88
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 65.0 bits (158), Expect = 2e-13
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ +++RNL Y +T +++ +F KYGP+ ++ + +T+G A V + A A
Sbjct: 6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNA 62
Query: 395 YQHLDGTVFLGRMLHLIPGKPKENEGNVDGK 425
HL G R L ++ +D K
Sbjct: 63 CDHLSGFNVCNRYLVVLYYNANRAFQKMDTK 93
Score = 63.5 bits (154), Expect = 7e-13
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYT 636
PE + LYI+NL + T + + F K GPI + V + + G +V +
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR--------GTAYVVYED 55
Query: 637 RESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQ 683
A L ++ + + N N + K+K +
Sbjct: 56 IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLL 102
Score = 57.3 bits (138), Expect = 1e-10
Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 680 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739
+ + + +RN+P++ E+ ++F +G ++ ++ + RG +V +
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ----IRVGNTPETRGTAYVVYEDIF 57
Query: 740 EAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKR 776
+AK A L ++ R LV+ + + + +
Sbjct: 58 DAKNACDHL-SGFNVCNRYLVVLYYNANRAFQKMDTK 93
Score = 47.3 bits (112), Expect = 3e-07
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI---TGLVEFLQKNQAKAAFNSLA 504
RI+ ++NLPY+ ++ +F +G + ++ V T V + AK A + L+
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 67
Query: 505 YTKFKEVPLYLEWAPEGVFAEAKEKSKGKE--KEKNEEEGEEGEEEK 549
L + + + + K +E K E+ G + K
Sbjct: 68 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 114
Score = 41.9 bits (98), Expect = 2e-05
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
YKIT E++ F + G + +++ T + R A++ Y A+ A D+ + V +
Sbjct: 17 YKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNACDHLSGFNVCNR 74
Query: 87 RIKVE 91
+ V
Sbjct: 75 YLVVL 79
Score = 35.4 bits (81), Expect = 0.005
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-----PLASVRTTFLGMAYIGFKDEKNCNKALNK-NK 279
+ ++NLP + +++ F G AY+ ++D + A + +
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 280 SFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAKH 319
+ L + Y N A ++ +K K+
Sbjct: 69 FNVCNRYLVV-LYYNANRAF-QKMDTKKKEEQLKLLKEKY 106
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 64.3 bits (156), Expect = 2e-13
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
++ + + + +NLS+ +TED+L ++FE + + + + K+KG A + F
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEA 64
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKENE 419
A + + G GR + L K
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGEKGGT 94
Score = 51.6 bits (123), Expect = 7e-09
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
++ TL KNL+FN TED ++ F+ I V+ K G +++F
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKS----------KGIAYIEF 60
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRSNR 664
+ + L+ Q + +D + L +
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90
Score = 50.8 bits (121), Expect = 1e-08
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725
LE T+ K +++ +L +N+ F + E++E+F+ E++ V G
Sbjct: 4 LEDPCTSKKVRAAR-------TLLAKNLSFNITEDELKEVFEDALEIRLVSQD------G 50
Query: 726 LHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
+G ++EF ++ +A++ ++ Q + GR + L + E
Sbjct: 51 KSKGIAYIEFKSEADAEKNLEEK-QGAEIDGRSVSLYYTGE 90
Score = 44.3 bits (104), Expect = 3e-06
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI-TGLVEFLQKNQAKAAFN 501
+ R+ R +L KNL + +LK +FE ++ V +EF + A+
Sbjct: 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLE 71
Query: 502 SLAYTKFKEVPLYLEWA 518
+ + L +
Sbjct: 72 EKQGAEIDGRSVSLYYT 88
Score = 38.5 bits (89), Expect = 3e-04
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 212 PPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLP---LASVRTTFLGMAYIGFKDE 268
P SK R T++ KNL + + +LK F+ L S G+AYI FK E
Sbjct: 7 PCTSKKV---RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSE 63
Query: 269 KNCNKALNK-NKSFWKGKQLNI 289
+ K L + + G+ +++
Sbjct: 64 ADAEKNLEEKQGAEIDGRSVSL 85
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 64.3 bits (156), Expect = 3e-13
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
RI+V NL + D+ +F KYG + K FA V F P A A
Sbjct: 13 NDCRIYVGNLPPDIRTKDIEDVFYKYGA---IRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69
Query: 395 YQHLDGTVFLGRMLHLIPGKPKENEG 420
DG + G L + + G
Sbjct: 70 VYGRDGYDYDGYRLRVEFPRSGRGTG 95
Score = 55.5 bits (133), Expect = 3e-10
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
D +Y+ NL + I F K G I + + ++ + FV+F
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP--------PFAFVEFE 61
Query: 636 TRESLNQALKVLQNSSLDEHQI--ELKRSNRN 665
A+ D +++ E RS R
Sbjct: 62 DPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 93
Score = 52.4 bits (125), Expect = 4e-09
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
A +I V N+P + ++E++F +G ++ + L + F FVEF +
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG----GPPFAFVEFEDPRD 65
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEE 766
A+ A+ G RL +E+
Sbjct: 66 AEDAVYGR-DGYDYDGYRLRVEFPRS 90
Score = 37.4 bits (86), Expect = 6e-04
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVP---PYGITGLVEFLQKNQAKAAFNSLAYT 506
I V NLP D++ +F +G + + + VEF A+ A
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 507 KFKEVPLYLEWAPEG 521
+ L +E+ G
Sbjct: 77 DYDGYRLRVEFPRSG 91
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASV-----RTTFLGMAYIGFKDEKNCNKALNK-NK 279
I V NLP ++ KD++ F R A++ F+D ++ A+ +
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 280 SFWKGKQLNIYKYSK 294
+ G +L + ++ +
Sbjct: 76 YDYDGYRLRV-EFPR 89
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 63.6 bits (154), Expect = 3e-13
Identities = 18/78 (23%), Positives = 36/78 (46%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+ V L +T+++ LF G + L DK T ++ G+ V ++ P+ A +A
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 398 LDGTVFLGRMLHLIPGKP 415
L+G + + + +P
Sbjct: 64 LNGLRLQTKTIKVSYARP 81
Score = 52.8 bits (126), Expect = 2e-09
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ ++V +P Q E LF + GE++ +L + + +G G+GFV +I +A++A+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYIDPKDAEKAI 61
Query: 746 KALCQSTHLYGRRLVLEWAE 765
L L + + + +A
Sbjct: 62 NTL-NGLRLQTKTIKVSYAR 80
Score = 50.5 bits (120), Expect = 1e-08
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
T L + L N T++ R F G I S + R K +GYGFV + +
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS-----LGYGFVNYIDPKDA 57
Query: 641 NQALKVLQNSSLDEHQIELKRS 662
+A+ L L I++ +
Sbjct: 58 EKAINTLNGLRLQTKTIKVSYA 79
Score = 43.9 bits (103), Expect = 2e-06
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 499
SK ++V LP + ++LF G++ + ITG V ++ A+ A
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 500 FNSLAYTKFKEVPLYLEWA 518
N+L + + + + +A
Sbjct: 61 INTLNGLRLQTKTIKVSYA 79
Score = 33.5 bits (76), Expect = 0.010
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGM--------AYIGFKDEKNCNKALNK 277
++V LP + +++ ++ F + ++ + D K+ KA+N
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 278 -NKSFWKGKQLNIYKYSK 294
N + K + + Y++
Sbjct: 64 LNGLRLQTKTIKV-SYAR 80
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 63.5 bits (154), Expect = 3e-13
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
ED + ++V NLS VTE + +LF + GP + + ++ F V F
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRD 60
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKENE 419
A A ++G LG+ + + ++
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQ 89
Score = 53.1 bits (127), Expect = 2e-09
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
+ TLY+ NL+ + TE I + F + GP S + + Y FV+FY
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-------DPYCFVEFY 56
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSNR 664
AL + + ++++ +
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNWATT 85
Score = 47.3 bits (112), Expect = 2e-07
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ V N+ + + +LF G K + + + + FVEF +A A+
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCK---MITEHTSNDPYCFVEFYEHRDAAAALA 66
Query: 747 ALCQSTHLYGRRLVLEWAE 765
A+ + G+ + + WA
Sbjct: 67 AM-NGRKILGKEVKVNWAT 84
Score = 38.1 bits (88), Expect = 4e-04
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVP----PYGITGLVEFLQKNQAKA 498
+ R + V NL + LF G + VEF + A A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 499 AFNSLAYTKFKEVPLYLEWA 518
A ++ K + + WA
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
Score = 33.9 bits (77), Expect = 0.010
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP------LPLASVRTTFLGMAYIGFKDEKNCNKAL 275
Q T+ V NL V + + F + + T+ ++ F + ++ AL
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAAL 65
Query: 276 NK-NKSFWKGKQLNIYKYSKDNSAK 299
N GK++ + ++ S++
Sbjct: 66 AAMNGRKILGKEVKV-NWATTPSSQ 89
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 63.1 bits (153), Expect = 6e-13
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
++ ++ ++ +T+ + + F +G + E+ + KG++ V F E A A
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 70
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
++GT G ++ GK +
Sbjct: 71 IVSVNGTTIEGHVVKCYWGKESPD 94
Score = 56.5 bits (136), Expect = 1e-10
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 679 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 738
N + + I + + F FG++ +R+ +G+ FV F T
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-------EKGYSFVRFSTH 64
Query: 739 NEAKRAMKALCQSTHLYGRRLVLEWAEE 766
A A+ ++ T + G + W +E
Sbjct: 65 ESAAHAIVSV-NGTTIEGHVVKCYWGKE 91
Score = 56.1 bits (135), Expect = 2e-10
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 568 NVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 627
E+ + + T+Y + T+ +R+ F G I + V +
Sbjct: 6 RFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------K 54
Query: 628 GYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRN 665
GY FV+F T ES A+ + ++++ H ++ +
Sbjct: 55 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
Score = 48.0 bits (114), Expect = 1e-07
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 438 FNQVVE--ARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ 495
F VV + + + ++ F PFG + + V P V F
Sbjct: 7 FEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHES 66
Query: 496 AKAAFNSLAYTKFKEVPLYLEWA 518
A A S+ T + + W
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWG 89
Score = 39.2 bits (91), Expect = 2e-04
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+T + ++ F G + ++++ + ++F+ + + A A+ N T +
Sbjct: 28 SGLTDQLMRQTFSPFGQIMEIRVF-----PEKGYSFVRFSTHESAAHAIVSVNGTTIEGH 82
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSS 113
+K W K +PD +
Sbjct: 83 VVKC-------------YWGKESPDMT 96
Score = 33.8 bits (77), Expect = 0.011
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRT-TFLGMAYIGFKDEKNCNKALNK-NKSFW 282
T+ + +G+ + ++ F P + +R G +++ F ++ A+ N +
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 79
Query: 283 KGKQLNIYKYSKDN 296
+G + Y + K++
Sbjct: 80 EGHVVKCY-WGKES 92
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 62.3 bits (151), Expect = 6e-13
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++F+ LS+ T++ L + F ++G + E ++ D T +++GF VTF+ +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA- 60
Query: 398 LDGTVFLGRMLH 409
+ +
Sbjct: 61 QSRHELDSKTID 72
Score = 56.1 bits (135), Expect = 1e-10
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+ + + +Q Q + E F FGE+K + + RGFGFV F+ + + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECL-VMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
Query: 747 ALCQSTHLYGRRLVLEWA 764
L + + + A
Sbjct: 61 Q--SRHELDSKTIDPKVA 76
Score = 55.8 bits (134), Expect = 2e-10
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++I L++ +T++ +R +F + G + + P S G+GFV F + +++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEV-----KECLVMRDPLTKRSRGFGFVTFMDQAGVDK 57
Query: 643 ALKVLQNSSLDEHQIELKR 661
L LD I+ K
Sbjct: 58 VLA-QSRHELDSKTIDPKV 75
Score = 40.7 bits (95), Expect = 3e-05
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GMAYIGFKDEKNCNKALNKN 278
+ + L ++ L+ YF G ++ F D+ +K L ++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 279 KSFWKGKQLNI 289
+ K ++
Sbjct: 63 RHELDSKTIDP 73
Score = 34.2 bits (78), Expect = 0.005
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFN 501
+ + L ++T L+ F FG++ LV +T V F+ +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
Score = 33.0 bits (75), Expect = 0.015
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYT-TEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
++ TQE L+ F + G V + + + R F F+ + + L + + S
Sbjct: 10 WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDS 68
Query: 86 SRIKVEK 92
I +
Sbjct: 69 KTIDPKV 75
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 62.7 bits (152), Expect = 7e-13
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ ++V L V+E L +LF + GP+ +P D+ T + +G+ V FL E A A
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
+ +D G+ + +
Sbjct: 68 IKIMDMIKLYGKPIRVNKASAHNK 91
Score = 60.4 bits (146), Expect = 6e-12
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
E D T+Y+ L+ +E + F + GP+ + PK GYGFV+F
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-----THMPKDRVTGQHQGYGFVEFL 59
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSNRN 665
+ E + A+K++ L I + +++ +
Sbjct: 60 SEEDADYAIKIMDMIKLYGKPIRVNKASAH 89
Score = 50.8 bits (121), Expect = 1e-08
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ V + + + + ELF G + K +G H+G+GFVEF+++ +A A+K
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTH-MPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 747 ALCQSTHLYGRRLVLEWAEEADN 769
+ LYG+ + + A +
Sbjct: 70 IM-DMIKLYGKPIRVNKASAHNK 91
Score = 39.6 bits (92), Expect = 1e-04
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 496
E + V L + L LF G + +P +T G VEFL + A
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 64
Query: 497 KAAFNSLAYTKFKEVPLYLEWA 518
A + K P+ + A
Sbjct: 65 DYAIKIMDMIKLYGKPIRVNKA 86
Score = 33.8 bits (77), Expect = 0.010
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPLP--------LASVRTTFLGMAYIGFKDEKNCN 272
+ Q T+ V L V + L F V G ++ F E++ +
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 65
Query: 273 KALNK-NKSFWKGKQLNIYKYSKDNS 297
A+ + GK + + + ++
Sbjct: 66 YAIKIMDMIKLYGKPIRV-NKASAHN 90
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 62.9 bits (152), Expect = 1e-12
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
+ D A G + +R L + +++++ + F + + ++ G A V F E
Sbjct: 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQE 68
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKE 417
A + R + + E
Sbjct: 69 IA-EKALKKHKERIGHRYIEIFKSSRAE 95
Score = 42.1 bits (98), Expect = 2e-05
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
+ +R +PF + E+ + F + G G FV+F ++ A
Sbjct: 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIA 70
Query: 742 KRAMKALCQSTHLYGRRLVLEWAEEAD 768
++A+K + R + + + A+
Sbjct: 71 EKALK--KHKERIGHRYIEIFKSSRAE 95
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 61.7 bits (149), Expect = 1e-12
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPL-AEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
IF+ NL + E L F +G + + D +T +KG+A + F + + A +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 398 LDGTVFLGRMLHLIPGKPKENEG 420
++G R + + K+++G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
Score = 57.1 bits (137), Expect = 7e-11
Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
I + N+ + + + + F AFG + + +G +G+ F+ F + + + A++A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 748 LCQSTHLYGRRLVLEWAEEADN 769
+L R + + +A + D+
Sbjct: 61 -MNGQYLCNRPITVSYAFKKDS 81
Score = 52.4 bits (125), Expect = 3e-09
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++I NL+ E + F G I + K + P S GY F+ F + ++ +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVI----LQTPKIMRDPDTGNSKGYAFINFASFDASDA 56
Query: 643 ALKVLQNSSLDEHQIELKRSNR 664
A++ + L I + + +
Sbjct: 57 AIEAMNGQYLCNRPITVSYAFK 78
Score = 37.4 bits (86), Expect = 5e-04
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRR--FAFIGYHREDQAQAALDYFNNTYVF 84
+I ++ L F G + +AFI + D + AA++ N Y+
Sbjct: 8 PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 67
Query: 85 SSRIKVEK 92
+ I V
Sbjct: 68 NRPITVSY 75
Score = 36.3 bits (83), Expect = 0.001
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGI-------TGLVEFLQKNQAKAAFNS 502
I + NL L F FG + + + F + + AA +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 503 LAYTKFKEVPLYLEWA 518
+ P+ + +A
Sbjct: 61 MNGQYLCNRPITVSYA 76
Score = 33.6 bits (76), Expect = 0.013
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP---------LPLASVRTTFLGMAYIGFKDEKNCNKALNK 277
I + NL + +K L F + G A+I F + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 278 -NKSFWKGKQLNI 289
N + + + +
Sbjct: 61 MNGQYLCNRPITV 73
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 61.5 bits (149), Expect = 2e-12
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
+ ++ + V L + TE DL + F +G + V + D +T +KGF V F E
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKEN 418
+ GR K++
Sbjct: 65 KVMSQRHM--IDGRWCDCKLPNSKQS 88
Score = 56.5 bits (136), Expect = 1e-10
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ 633
+R + + L + L + +TE ++ +F G + + K S G+GFV+
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM-----VQVKKDLKTGHSKGFGFVR 56
Query: 634 FYTRESLNQALKVLQNSSLDEHQIELKRSNR 664
F E+ + + Q +D + K N
Sbjct: 57 FTEYETQVKVMS--QRHMIDGRWCDCKLPNS 85
Score = 52.7 bits (126), Expect = 3e-09
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 673 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 732
VKR A Q S ++V +P++ + +++E F FGE+ V++ K + +G +GFGF
Sbjct: 1 VKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGF 54
Query: 733 VEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
V F + M + GR +
Sbjct: 55 VRFTEYETQVKVMSQR---HMIDGRWCDCKLPNS 85
Score = 32.6 bits (74), Expect = 0.031
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASVRTTF--------LGMAYIGFKDEKNCNKALNK 277
++V LP ++DLK YF + G ++ F + + K +++
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 69
Query: 278 NKSFWKGKQLNI 289
G+ +
Sbjct: 70 RHMI-DGRWCDC 80
Score = 27.6 bits (61), Expect = 1.9
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALDYFNNTYVFS 85
+K T++ LK F G V VQ+K + + F F+ + + + +
Sbjct: 18 WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 75
Query: 86 SRIKVEK 92
+
Sbjct: 76 RWCDCKL 82
Score = 27.2 bits (60), Expect = 2.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 503
++V LP++T DLK F FG++ V V T G V F + +
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 61.2 bits (148), Expect = 2e-12
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
G IF++NL ++ L F +G + + D+ K GF V F E A +A
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF--VHFETQEAAERAI 65
Query: 396 QHLDGTVFLGRMLHLIPGKPKE 417
+ ++G + R + + K ++
Sbjct: 66 EKMNGMLLNDRKVFVGRFKSRK 87
Score = 51.6 bits (123), Expect = 7e-09
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 682 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 741
K I ++N+ + + F AFG + ++ GS + FV F T+ A
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYG---FVHFETQEAA 61
Query: 742 KRAMKALCQSTHLYGRRLVLEWAEE 766
+RA++ + L R++ + +
Sbjct: 62 ERAIEKM-NGMLLNDRKVFVGRFKS 85
Score = 50.8 bits (121), Expect = 1e-08
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
++IKNL+ + ++ F G I S V + S GYGFV F T+E+
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-------ENGSKGYGFVHFETQEAA 61
Query: 641 NQALKVLQNSSLDEHQIELKRSNR 664
+A++ + L++ ++ + R
Sbjct: 62 ERAIEKMNGMLLNDRKVFVGRFKS 85
Score = 38.9 bits (90), Expect = 2e-04
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG----LVEFLQKNQAKAAFNSLAY 505
I +KNL L F FG++ V V F + A+ A +
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 506 TKFKEVPLYLEWA 518
+ +++
Sbjct: 71 MLLNDRKVFVGRF 83
Score = 33.9 bits (77), Expect = 0.010
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKP------LPLASVRTTFLGMAYIGFKDEKNCNKA 274
K I +KNL + K L F + G ++ F+ ++ +A
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 64
Query: 275 LNK-NKSFWKGKQLNI 289
+ K N +++ +
Sbjct: 65 IEKMNGMLLNDRKVFV 80
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 61.2 bits (148), Expect = 3e-12
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
+E + R+ V N+ + + DL ++F ++G + +V + ++ K GF VTF
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF--VTFENSA 62
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
A +A + L GTV GR + + +
Sbjct: 63 DADRAREKLHGTVVEGRKIEVNNATARVM 91
Score = 50.8 bits (121), Expect = 1e-08
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
+K T ++ V NIPF+ + ++ ++F F + + + +GFGFV F +
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTN 778
A RA + L T + GR++ + A R TN
Sbjct: 64 ADRAREKL-HGTVVEGRKIEVNNATA-------RVMTN 93
Score = 47.8 bits (113), Expect = 2e-07
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
L++ N+ F + +R+ F + G I V + + S G+GFV F
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-------SKGFGFVTFE 59
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSN 663
++A + L + ++ +IE+ +
Sbjct: 60 NSADADRAREKLHGTVVEGRKIEVNNAT 87
Score = 34.3 bits (78), Expect = 0.009
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG----LVEFLQKNQAKAAF 500
+ + + V N+P+R DL+ +F FG + V + V F A A
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 501 NSLAYTKFKEVPLYLEWA 518
L T + + + A
Sbjct: 69 EKLHGTVVEGRKIEVNNA 86
Score = 33.9 bits (77), Expect = 0.009
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYFKPL------PLASVRTTFLGMAYIGFKDEKNCNKA 274
K + V N+P + DL+ F + G ++ F++ + ++A
Sbjct: 8 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 67
Query: 275 LNK-NKSFWKGKQLNI 289
K + + +G+++ +
Sbjct: 68 REKLHGTVVEGRKIEV 83
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 60.5 bits (146), Expect = 5e-12
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVI--LPIDKETDKTKGFALVTFLMPEHATQAY 395
R+F+ + +++ + K + + K +GFA V + A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 396 QHLDGTVFL--GRMLHLIPGKPKEN 418
+ L G + + +P+ +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEID 87
Score = 59.7 bits (144), Expect = 1e-11
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGEL-KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
++ + IP K+ E+ E E V + +RGF FVE+ + A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 745 MKALCQSTH-LYGRRLVLEWAEEADNVED 772
+ L L+G ++ ++WAE +V++
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPEIDVDE 90
Score = 48.1 bits (114), Expect = 1e-07
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
L+I + + I K + + G+ FV++ + +
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAA 58
Query: 641 NQALKVLQNSS--LDEHQIELKRSN 663
A + L L HQI + +
Sbjct: 59 AMARRKLMPGRIQLWGHQIAVDWAE 83
Score = 33.9 bits (77), Expect = 0.012
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT--------GLVEFLQKNQAKAAFN 501
+ + +P ++ + ++ VE+ A A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 502 SLAYTKFK--EVPLYLEWA 518
L + + + ++WA
Sbjct: 64 KLMPGRIQLWGHQIAVDWA 82
Score = 29.7 bits (66), Expect = 0.31
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 226 TIVVKNLPAGVKKKDLKAYF----------KPLPLASVRTTFLGMAYIGFKDEKNCNKA- 274
+ + +P K++++ A+ + G A++ ++ + A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 275 --LNKNKSFWKGKQLNI 289
L + G Q+ +
Sbjct: 63 RKLMPGRIQLWGHQIAV 79
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 61.1 bits (147), Expect = 5e-12
Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 502
RSK +IL KNLP TL +++ F FG LGRVL+P GIT +VEFL+ +A+ AF
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH 65
Query: 503 LAYTKFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEG 545
LAY+KF VPLYLEWAP GVF A +K K + E+ E+ E G
Sbjct: 66 LAYSKFHHVPLYLEWAPIGVFGAAPQK-KDSQHEQPAEKAESG 107
Score = 45.3 bits (106), Expect = 1e-06
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 677 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736
SS + ++ + IL +N+P +E++E F FG L V LP+ VEF+
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-------GGITAIVEFL 54
Query: 737 TKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNR 779
EA++A + L + + L LEWA +K+ ++
Sbjct: 55 EPLEARKAFRHL-AYSKFHHVPLYLEWAPIGVFGAAPQKKDSQ 96
Score = 43.4 bits (101), Expect = 8e-06
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I +NL ++ + F ++G L V+LP A+V FL P A +A++HL
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHL 66
Query: 399 DGTVFLGRMLHLIPGKPKENEGNVDGK 425
+ F L+L K
Sbjct: 67 AYSKFHHVPLYLEWAPIGVFGAAPQKK 93
Score = 42.6 bits (99), Expect = 2e-05
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
T + KNL + I+ F + G + V V+F
Sbjct: 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL-----------LPEGGITAIVEFLEPL 57
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAKQT 684
+A + L S + L+ + + A K +
Sbjct: 58 EARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEK 103
Score = 31.8 bits (71), Expect = 0.071
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 221 KRQYHTIVVKNLPAGVKKKDLKAYF-KPLPLASVR-TTFLGMAYIGFKDEKNCNKALNK- 277
R I+ KNLPAG +++ F + L V A + F + KA
Sbjct: 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHL 66
Query: 278 NKSFWKGKQLNIYKYSKDNSAKYSGAADDNNNASMENIKAK 318
S + L + D + E ++
Sbjct: 67 AYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAESG 107
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 60.5 bits (146), Expect = 7e-12
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++F+ LS+ TE+ L +E++G L + ++ D + +++GF VTF A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA- 80
Query: 398 LDGTVFLGRMLHLIPGKPKENEG 420
GR++ +E G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 59.7 bits (144), Expect = 1e-11
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 564 EVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQ 623
+E E ++RE E L+I L+F +TE+S+R ++++ G + + P
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKL-----TDCVVMRDPAS 58
Query: 624 FLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLES 668
S G+GFV F + ++ A+ + S+D +E KR+ ES
Sbjct: 59 KRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAVAREES 102
Score = 55.1 bits (132), Expect = 6e-10
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 666 LESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 725
+E TV + K+ K+ + + F+ + + ++ +G+L + S
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPASK 59
Query: 726 LHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWA 764
RGFGFV F + E AM A + + GR + + A
Sbjct: 60 RSRGFGFVTFSSMAEVDAAMAA--RPHSIDGRVVEPKRA 96
Score = 41.6 bits (97), Expect = 3e-05
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 211 VPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GMAY 262
P+ + K Q+ + + L ++ L+ Y++ + G +
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 263 IGFKDEKNCNKALNKNKSFWKGKQLNI 289
+ F + A+ G+ +
Sbjct: 67 VTFSSMAEVDAAMAARPHSIDGRVVEP 93
Score = 31.2 bits (70), Expect = 0.14
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQA 496
E R + + L + T L+ +E +G L +V + V F +
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 497 KAAFNSLAYTKFKEVPLYLEWA 518
AA + + A
Sbjct: 76 DAAMA-ARPHSIDGRVVEPKRA 96
Score = 30.4 bits (68), Expect = 0.23
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 27 YKITQEQLKAKFEEKGTVT-DVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
++ T+E L+ +E+ G +T V ++ + R F F+ + + AA+ +
Sbjct: 30 FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDG 88
Query: 86 SRIKVEK 92
++ ++
Sbjct: 89 RVVEPKR 95
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 59.7 bits (144), Expect = 7e-12
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
E +FV ++ ED++ + F YG + + L +D+ T +KG+ALV + + A A
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
Query: 395 YQHLDGTVFLGRMLHLIPGKPK 416
+ L+G +G+ + + K
Sbjct: 66 KEALNGAEIMGQTIQVDWCFVK 87
Score = 48.6 bits (115), Expect = 8e-08
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
G + V +I +A++ E++E F +GE +G +G+ VE+ T +A A
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGE-IKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
Query: 745 MKALCQSTHLYGRRLVLEWA 764
+AL + G+ + ++W
Sbjct: 66 KEAL-NGAEIMGQTIQVDWC 84
Score = 48.2 bits (114), Expect = 9e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
L++ +++ + ED I+ F G I S GY V++ T +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEI-----KNIHLNLDRRTGFSKGYALVEYETHKQA 62
Query: 641 NQALKVLQNSSLDEHQIELKRS 662
A + L + + I++
Sbjct: 63 LAAKEALNGAEIMGQTIQVDWC 84
Score = 38.2 bits (88), Expect = 3e-04
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFN 501
I+ V ++ +++ F +G++ + + LVE+ QA AA
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 502 SLAYTKFKEVPLYLEWA 518
+L + + ++W
Sbjct: 68 ALNGAEIMGQTIQVDWC 84
Score = 32.4 bits (73), Expect = 0.035
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 218 PVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLP--------LASVRTTFLGMAYIGFKDEK 269
P + + V ++ ++ +++ F L G A + ++ K
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 270 NCNKALNK-NKSFWKGKQLNI 289
A N + G+ + +
Sbjct: 61 QALAAKEALNGAEIMGQTIQV 81
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 59.7 bits (144), Expect = 8e-12
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 331 EDIAESGR-IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
ED S + ++VRNL + +E+ + K F P + K + +A V F E
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNRE 55
Query: 390 HATQAYQHLDGTVFLGRMLHLIPGKPKENE 419
A +A + L+G V G + + KP + +
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTLAKPVDKD 85
Score = 46.6 bits (110), Expect = 4e-07
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
+E LY++NL +++E+ I + F P A V + +D Y FV
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-----------YAFV 49
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRS 662
F RE +A+K L LD IE+ +
Sbjct: 50 HFSNREDAVEAMKALNGKVLDGSPIEVTLA 79
Score = 44.6 bits (105), Expect = 2e-06
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ VRN+ + +E+ F R+ K R + FV F + +A AMK
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------IRDYAFVHFSNREDAVEAMK 62
Query: 747 ALCQSTHLYGRRLVLEWAEEADN 769
AL L G + + A+ D
Sbjct: 63 AL-NGKVLDGSPIEVTLAKPVDK 84
Score = 37.3 bits (86), Expect = 5e-04
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
++E ++ +F ++K K R +AF+ + + A A+ N + S
Sbjct: 18 LSTSEEMIEKEFNNIKPGAVERVK-----KIRDYAFVHFSNREDAVEAMKALNGKVLDGS 72
Query: 87 RIKVEK 92
I+V
Sbjct: 73 PIEVTL 78
Score = 36.9 bits (85), Expect = 8e-04
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 507
+I+ V+NL T ++ F V V F + A A +L
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKV 68
Query: 508 FKEVPLYLEWA 518
P+ + A
Sbjct: 69 LDGSPIEVTLA 79
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 58.5 bits (141), Expect = 1e-11
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++F+ LS+ T+ DL F K+G + + L +D T +++GF V F E +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD- 59
Query: 398 LDGTVFLGRML 408
G+++
Sbjct: 60 QKEHKLNGKVI 70
Score = 51.9 bits (124), Expect = 3e-09
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
++I L++++T+ ++ +F K G + T+ S G+GFV F ES+++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT-----GRSRGFGFVLFKESESVDK 56
Query: 643 ALKVLQNSSLDEHQIELKR 661
+ + L+ I+ KR
Sbjct: 57 VMD-QKEHKLNGKVIDPKR 74
Score = 45.4 bits (107), Expect = 6e-07
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+ + + + + ++++ F FGE+ L + +G RGFGFV F + M
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI-TGRSRGFGFVLFKESESVDKVMD 59
Query: 747 ALCQSTHLYGRRL 759
+ L G+ +
Sbjct: 60 Q--KEHKLNGKVI 70
Score = 35.3 bits (81), Expect = 0.003
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GMAYIGFKDEKNCNKALNKN 278
+ + L KKDLK YF T L G ++ FK+ ++ +K +++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 279 KSFWKGKQLNI 289
+ GK ++
Sbjct: 62 EHKLNGKVIDP 72
Score = 33.4 bits (76), Expect = 0.012
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALDYFNNTYVFS 85
+ T++ LK F + G V D LK R F F+ + + +D +
Sbjct: 9 WDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNG 67
Query: 86 SRIKVEK 92
I ++
Sbjct: 68 KVIDPKR 74
Score = 30.0 bits (67), Expect = 0.17
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 501
+ + L + T DLK F FG++ + IT G V F + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 58.8 bits (142), Expect = 1e-11
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
+ + R+FV NL +TE+++ KLFEKYG EV + DK F +
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTL 56
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKEN 418
A A LD G+ L + +
Sbjct: 57 AEIAKVELDNMPLRGKQLRVRFACHSAS 84
Score = 53.0 bits (127), Expect = 2e-09
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ 633
E+ + L++ NL + TE+ +R+ F+K G V G+GF++
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVF-----------IHKDKGFGFIR 50
Query: 634 FYTRESLNQALKVLQNSSLDEHQIELKRSNRN 665
TR A L N L Q+ ++ + +
Sbjct: 51 LETRTLAEIAKVELDNMPLRGKQLRVRFACHS 82
Score = 53.0 bits (127), Expect = 2e-09
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
S++ V N+P + E+ +LF+ +G V +GFGF+ T+ A+ A
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYG-------KAGEVFIHKDKGFGFIRLETRTLAEIAK 61
Query: 746 KALCQSTHLYGRRLVLEWA 764
L + L G++L + +A
Sbjct: 62 VEL-DNMPLRGKQLRVRFA 79
Score = 48.4 bits (115), Expect = 6e-08
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK 509
+ V NLP +++ LFE +G G V + G + + A+ A L +
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR 70
Query: 510 EVPLYLEWAPEG 521
L + +A
Sbjct: 71 GKQLRVRFACHS 82
Score = 35.3 bits (81), Expect = 0.003
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 223 QYHTIVVKNLPAGVKKKDLKAYFKPLP--LASVRTTFLGMAYIGFKDEKNCNKALNK-NK 279
Q + V NLP + +++++ F+ G +I + A + +
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN 66
Query: 280 SFWKGKQLNIYKYSKDNSA 298
+GKQL + +++ +++
Sbjct: 67 MPLRGKQLRV-RFACHSAS 84
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.6 bits (141), Expect = 2e-11
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILP-----IDKETDKTKGFALVTFLMPEHAT 392
R++V N+ + +TE+ + F L + + + ++ K FA + F + T
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPKE 417
QA DG +F G+ L + +P +
Sbjct: 63 QA-MAFDGIIFQGQSLKI--RRPHD 84
Score = 55.9 bits (134), Expect = 2e-10
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
LY+ N+ F TE+++ F + +T A + + F++F + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 642 QALKVLQNSSLDEHQIELKRSN 663
QA+ ++++R +
Sbjct: 63 QAMA-FDGIIFQGQSLKIRRPH 83
Score = 50.5 bits (120), Expect = 1e-08
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPK----KMVGSGLHRGFGFVEFITKNEAK 742
++ V NIPF + + + F A L + V + F F+EF + +E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 743 RAMKALCQSTHLYGRRLVLEWAEE 766
+AM G+ L + +
Sbjct: 63 QAMA--FDGIIFQGQSLKIRRPHD 84
Score = 29.3 bits (65), Expect = 0.37
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPL-PLASVRTT------------FLGMAYIGFKDEKNCN 272
+ V N+P G+ ++ + +F L + A++ F+
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 273 KALNKNKSFWKGKQLNI 289
+A+ + ++G+ L I
Sbjct: 63 QAMAFDGIIFQGQSLKI 79
Score = 27.8 bits (61), Expect = 1.7
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYG 483
R + V N+P+ + F LG + P
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGN 37
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 58.5 bits (141), Expect = 2e-11
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S +FV + +TED+L + F +YG + +V + FA VTF + A
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLC 59
Query: 396 QHLDGTVFLGRMLHLIPGKPKENEGN 421
+ + G +H+ +PK N +
Sbjct: 60 G--EDLIIKGISVHISNAEPKHNSNS 83
Score = 48.9 bits (116), Expect = 5e-08
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
S + V + E+ E F +G++ V +PK R F FV F A+
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSLC 59
Query: 746 KALCQSTHLYGRRLVLEWAEEADN 769
+ + G + + AE N
Sbjct: 60 G---EDLIIKGISVHISNAEPKHN 80
Score = 47.3 bits (112), Expect = 2e-07
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+ +++ + TED +R F + G + V + + FV F +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFI----------PKPFRAFAFVTFADDQIA 55
Query: 641 NQALKVLQNSSLDEHQIELKRS 662
++ + + + +
Sbjct: 56 QSLCG--EDLIIKGISVHISNA 75
Score = 34.6 bits (79), Expect = 0.005
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 225 HTIVVKNLPAGVKKKDLK---AYFKPLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSF 281
+ V + + +L+ + + + + F A++ F D++
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC-GEDLI 64
Query: 282 WKGKQLNIYKYSKDNSAKYSGAA 304
KG ++I ++ SG +
Sbjct: 65 IKGISVHI-SNAEPKHNSNSGPS 86
Score = 31.5 bits (71), Expect = 0.064
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRV-LVPPYGITGLVEFLQKNQAKAAFNSLAYTKF 508
+ V +L+ F +GD+ V + P+ V F A++
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGED--LII 65
Query: 509 KEVPLYLEWA 518
K + +++ A
Sbjct: 66 KGISVHISNA 75
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 57.8 bits (139), Expect = 3e-11
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++++ NLS VT DDL +LF P+ + G+A V + A +A +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKL------PLAGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 398 LDGTVFL-GRMLHLIPGKPKEN 418
L G V L G+++ + K+
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKL 78
Score = 53.2 bits (127), Expect = 1e-09
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+K+ + N+ ++ +LF ++ G+ FV++ +N A RA+
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAI 54
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+ L L+G+ + ++++
Sbjct: 55 ETLSGKVELHGKIMEVDYSV 74
Score = 42.0 bits (98), Expect = 1e-05
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
LYI NL+ T D +R+ F + V K GY FV + +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS-----------GYAFVDYPDQNWAI 51
Query: 642 QALKVLQNS-SLDEHQIELKRS 662
+A++ L L +E+ S
Sbjct: 52 RAIETLSGKVELHGKIMEVDYS 73
Score = 32.4 bits (73), Expect = 0.031
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSL-AYTKF 508
+ + NL DL+ LF V V++ +N A A +L +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVEL 63
Query: 509 KEVPLYLEWA 518
+ ++++
Sbjct: 64 HGKIMEVDYS 73
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 58.6 bits (141), Expect = 3e-11
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+ ++++NLS VTE DL LF ++ + T + +G A +TF E A QA
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 396 QHLDGTVFLGRMLHLIPGKPKE 417
++G G++L + GK K+
Sbjct: 78 HLVNGYKLYGKILVIEFGKNKK 99
Score = 46.3 bits (109), Expect = 6e-07
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 578 EPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTR 637
EP+ LY+KNL+ TE + F + + + G F+ F +
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFITFPNK 70
Query: 638 ESLNQALKVLQNSSLDEHQIELKRSNR 664
E QAL ++ L + ++
Sbjct: 71 EIAWQALHLVNGYKLYGKILVIEFGKN 97
Score = 37.1 bits (85), Expect = 0.001
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 675 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 734
SS + + ++N+ + + ++ LF F E K + +M+ +G RG F+
Sbjct: 8 MFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFIT 66
Query: 735 FITKNEAKRAMKALCQSTHLYGRRLVLEWAEEAD 768
F K A +A+ + LYG+ LV+E+ +
Sbjct: 67 FPNKEIAWQALHLV-NGYKLYGKILVIEFGKNKK 99
Score = 29.8 bits (66), Expect = 0.33
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 433 RKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------G 486
RK+ F+ +++ +KNL R DL +LF F + + +T
Sbjct: 4 RKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 487 LVEFLQKNQAKAAFNSLAYTKFKEVPLYLEWA 518
+ F K A A + + K L +E+
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEFG 95
Score = 25.9 bits (56), Expect = 7.8
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPL--------PLASVRTTFLGMAYIGFKDEKNCNKALN 276
+ +KNL V ++DL + F + G A+I F +++ +AL+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 277 K-NKSFWKGKQLNIYKYSKDNSAK 299
N GK L I ++ K+ +
Sbjct: 79 LVNGYKLYGKILVI-EFGKNKKQR 101
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 57.7 bits (139), Expect = 4e-11
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
+EPE L+I L+F +T++S+R HF++ G + V R + K S G+GFV +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR-----SRGFGFVTY 55
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKR 661
T E ++ A+ + +D +E KR
Sbjct: 56 ATVEEVDAAMN-ARPHKVDGRVVEPKR 81
Score = 56.6 bits (136), Expect = 9e-11
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
++F+ LS+ T++ L FE++G L + ++ D T +++GF VT+ E A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN- 66
Query: 398 LDGTVFLGRML 408
GR++
Sbjct: 67 ARPHKVDGRVV 77
Score = 48.1 bits (114), Expect = 8e-08
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
K+ + + F+ + F+ +G L + + RGFGFV + T E AM
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCV-VMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 747 ALCQSTHLYGRRLVLEWA 764
A + + GR + + A
Sbjct: 67 A--RPHKVDGRVVEPKRA 82
Score = 36.9 bits (85), Expect = 7e-04
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 216 KAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGM--------AYIGFKD 267
K P R + + L + L+++F+ + ++ +
Sbjct: 1 KEPEQLR---KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 57
Query: 268 EKNCNKALNKNKSFWKGKQLNI 289
+ + A+N G+ +
Sbjct: 58 VEEVDAAMNARPHKVDGRVVEP 79
Score = 31.2 bits (70), Expect = 0.089
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQA 496
E R + + L + T L++ FE +G L +V T V + +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 497 KAAFN 501
AA N
Sbjct: 62 DAAMN 66
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 57.8 bits (139), Expect = 5e-11
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
E +F+ +L + DL ++F +G + + IDK+T+ +K F V++ P A A
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 395 YQHLDGTVFLGRMLHLIPGKPKEN 418
Q ++G + L + + K +
Sbjct: 77 IQSMNGFQIGMKRLKVQLKRSKND 100
Score = 50.9 bits (121), Expect = 1e-08
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ 633
++E L+I +L + + + F G + S V K LS +GFV
Sbjct: 12 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-----LSKCFGFVS 66
Query: 634 FYTRESLNQALKVLQNSSLDEHQIELKRSNRNLES 668
+ S A++ + + +++++ +S
Sbjct: 67 YDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
Score = 47.8 bits (113), Expect = 2e-07
Identities = 14/85 (16%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 685 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRA 744
G+ + + ++P + ++ ++F FG + L + FGFV + A+ A
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGN-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 745 MKALCQSTHLYGRRLVLEWAEEADN 769
++++ + +RL ++ ++
Sbjct: 77 IQSM-NGFQIGMKRLKVQLKRSKND 100
Score = 33.5 bits (76), Expect = 0.016
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 12/108 (11%)
Query: 430 ISERKLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGL-- 487
++++ + A E + + +LP DL +F PFG++ V T L
Sbjct: 1 LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 488 ----VEFLQKNQAKAAFNSLAYTKFKEVPLYLEWAPEGVFAEAKEKSK 531
V + A+AA S+ + L ++ +K SK
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL------KRSKNDSK 102
Score = 30.8 bits (69), Expect = 0.14
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 197 LKTKSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTT 256
L +S A S P + + + +LP +DL F P
Sbjct: 1 LTQQSIGAAGSQKEGPEGAN----------LFIYHLPQEFGDQDLLQMFMPFGNVVSAKV 50
Query: 257 F--------LGMAYIGFKDEKNCNKALNK-NKSFWKGKQLNI-YKYSKDNS 297
F ++ + + + A+ N K+L + K SK++S
Sbjct: 51 FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 57.1 bits (137), Expect = 6e-11
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 333 IAESGRIFVRNLSYTVTEDDLTKLFE---KYGPLAEVILPIDKETDKT---KGFALVTFL 386
+ + +FV LS + + ++ K E K+G + +V++ + A VT++
Sbjct: 5 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYI 64
Query: 387 MPEHATQAYQHLDGTVFLGRML 408
E A +A Q ++ V GR L
Sbjct: 65 RSEDALRAIQCVNNVVVDGRTL 86
Score = 42.9 bits (100), Expect = 7e-06
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVT-VARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+++ L+ + + + + G + V G +V + E
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 641 NQALKVLQNSSLDEHQI 657
+A++ + N +D +
Sbjct: 70 LRAIQCVNNVVVDGRTL 86
Score = 35.2 bits (80), Expect = 0.004
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 678 SNVAKQTGSKILVRNIPFQAKQSEV---EELFKAFGELKFVRLP--KKMVGSGLHRGFGF 732
++V + + V + + EV E F FG++ V + GS +
Sbjct: 1 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAY 60
Query: 733 VEFITKNEAKRAMKALCQSTHLYGRRL 759
V +I +A RA++ + + + GR L
Sbjct: 61 VTYIRSEDALRAIQCV-NNVVVDGRTL 86
Score = 27.1 bits (59), Expect = 2.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 447 KRIILVKNLPYRTLPTDLKALFEPFGDLG 475
K ++ V L R ++ E FG G
Sbjct: 8 KNLVFVVGLSQRLADPEVLKRPEYFGKFG 36
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 57.3 bits (138), Expect = 9e-11
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
RI V NL Y VT D L ++F K+G + ++I + AL+ + P A A
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLS 64
Query: 398 LDGTVFLGRMLHLIPGKPKENEGNV 422
LDG L K NV
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTSLNV 89
Score = 50.0 bits (119), Expect = 3e-08
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYT 636
P + ++NL + T D + + F K G + + K + +Q+
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------NQFQALLQYAD 54
Query: 637 RESLNQALKVLQNSSLDEHQIELK 660
S A L ++ L+
Sbjct: 55 PVSAQHAKLSLDGQNIYNACCTLR 78
Score = 44.2 bits (104), Expect = 4e-06
Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+I+V N+ + + ++F FG + + K ++ +++ A+ A
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKL 63
Query: 747 ALC-QSTHLYGRRLVLEWAEEAD-NVEDIRKRTNRY 780
+L Q+ + L +++++ NV+ ++ Y
Sbjct: 64 SLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDY 99
Score = 32.3 bits (73), Expect = 0.059
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG--LVEFLQKNQAKAAFNSLAYTK 507
I+V+NL Y L +F FG + +++ L+++ A+ A SL
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 69
Query: 508 FKEVPLYLEWAPEGVFAEAKEKSKGKEKEKN 538
L F++ + +K+
Sbjct: 70 IYNACCTLRID----FSKLTSLNVKYNNDKS 96
Score = 26.5 bits (58), Expect = 4.6
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL----GMAYIGFKDEKNCNKALNK----- 277
I+V+NL V L F TF A + + D + A
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 69
Query: 278 --------NKSFWKGKQLNIYKYSKDNSAKYS 301
F K LN+ KY+ D S Y+
Sbjct: 70 IYNACCTLRIDFSKLTSLNV-KYNNDKSRDYT 100
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.1 bits (135), Expect = 1e-10
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+IFV LS E+ + + F +G + + LP+D +T+K +GF +TF E + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME- 59
Query: 398 LDGTVFLGRML 408
Sbjct: 60 KKYHNVGLSKC 70
Score = 53.0 bits (127), Expect = 1e-09
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++ L+ ++ E+ IR +F G + + P G+ F+ F E + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEV-----ESIELPMDNKTNKRRGFCFITFKEEEPVKK 56
Query: 643 ALKVLQNSSLDEHQIELKR 661
++ + ++ + E+K
Sbjct: 57 IME-KKYHNVGLSKCEIKV 74
Score = 49.2 bits (117), Expect = 3e-08
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
KI V + + ++ E F FGE++ + + RGF F+ F + K+ M+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIE-LPMDNKTNKRRGFCFITFKEEEPVKKIME 59
Query: 747 ALCQSTHLYGRRLVLEWA 764
+ ++ + ++ A
Sbjct: 60 K--KYHNVGLSKCEIKVA 75
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGM--------AYIGFKDEKNCNKALNKN 278
I V L ++ ++ YF + +I FK+E+ K + K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 279 KSFWKGKQLNI 289
+ I
Sbjct: 62 YHNVGLSKCEI 72
Score = 33.0 bits (75), Expect = 0.014
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKF-RRFAFIGYHREDQAQAALDYFNNTYVFS 85
+E+++ F G V ++L + R F FI + E+ + ++ V
Sbjct: 9 PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67
Query: 86 SRIKVEK 92
S+ +++
Sbjct: 68 SKCEIKV 74
Score = 33.0 bits (75), Expect = 0.015
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFN 501
I V L T ++ F FG++ + +P T + F ++ K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 55.5 bits (133), Expect = 1e-10
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+++R L T+ DL KL + YG + +DK T+K KG+ V F P A +A L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 399 DGTVFLGRML 408
+ +M
Sbjct: 61 KASGVQAQMA 70
Score = 39.4 bits (91), Expect = 8e-05
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
LYI+ L +T+ + + + G I S K GYGFV F + + +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKC-----KGYGFVDFDSPSAAQK 55
Query: 643 ALKVLQNSSLDEHQI 657
A+ L+ S +
Sbjct: 56 AVTALKASGVQAQMA 70
Score = 35.9 bits (82), Expect = 0.001
Identities = 12/72 (16%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
+ +R + ++ +L + +G+ + +G+GFV+F + + A++A+ A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGK-IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 59
Query: 748 LCQSTHLYGRRL 759
L +++ + +
Sbjct: 60 L-KASGVQAQMA 70
Score = 27.0 bits (59), Expect = 1.7
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 227 IVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFKDEKNCNKALNK- 277
+ ++ L G +DL +P L G ++ F KA+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 278 NKSFWKGKQL 287
S + +
Sbjct: 61 KASGVQAQMA 70
Score = 27.0 bits (59), Expect = 2.0
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 27 YKITQEQLKAKFEEKGTVTDV-QLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFS 85
T + L + G + + T K + + F+ + AQ A+ + V +
Sbjct: 8 PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 67
Query: 86 SRIK 89
K
Sbjct: 68 QMAK 71
Score = 26.7 bits (58), Expect = 2.3
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 503
+ ++ L T DL L +P+G + T G V+F + A+ A +L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 504 AYTKFK 509
+ +
Sbjct: 61 KASGVQ 66
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.6 bits (136), Expect = 1e-10
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ ++ E+ T++ EKYG + E+ + D D G V F E A +A L
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 399 DGTVFLGRMLH 409
+ F G+ +H
Sbjct: 89 NNRWFNGQPIH 99
Score = 46.6 bits (110), Expect = 5e-07
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 567 ENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLS 626
+N + + + + ++ E+ +K G + + V
Sbjct: 14 QNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDH------L 67
Query: 627 MGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRS 662
+G +V+F E +A+ L N + I + S
Sbjct: 68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103
Score = 43.9 bits (103), Expect = 4e-06
Identities = 14/78 (17%), Positives = 31/78 (39%)
Query: 14 HISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQA 73
++ D++ E + +E E+ G V ++ + ++ + RE+ A+
Sbjct: 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEK 83
Query: 74 ALDYFNNTYVFSSRIKVE 91
A+ NN + I E
Sbjct: 84 AVIDLNNRWFNGQPIHAE 101
Score = 40.8 bits (95), Expect = 5e-05
Identities = 12/83 (14%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
+ S + ++ + + E+ + +GE++ + + + G +V+F + +
Sbjct: 23 LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL--GDHLVGNVYVKFRREED 80
Query: 741 AKRAMKALCQSTHLYGRRLVLEW 763
A++A+ L + G+ + E
Sbjct: 81 AEKAVIDL-NNRWFNGQPIHAEL 102
Score = 28.5 bits (63), Expect = 1.0
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 452 VKNLPYRTLPTDLKALFEPFGDLGRVLVP-----PYGITGLVEFLQKNQAKAAFNSLAYT 506
++ + E +G++ + V V+F ++ A+ A L
Sbjct: 32 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91
Query: 507 KFKEVPLYLEWAP 519
F P++ E +P
Sbjct: 92 WFNGQPIHAELSP 104
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 56.4 bits (135), Expect = 1e-10
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
D+ E +F+RNLS+ E+ L ++ +++G L V + + +T+ +KG A F+ E
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 391 ATQAYQHL------DGTVFLGRMLHLIPGKPKEN 418
A + G GR L + ++
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 44.8 bits (105), Expect = 2e-06
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
+ T++I+NL+F+S E+++ ++ G + V V D S G F QF
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-----TEHSKGCAFAQFM 58
Query: 636 TRESLNQALKVLQNSS------LDEHQIELKRSNRNLES 668
T+E+ + L + LD Q+++ + E+
Sbjct: 59 TQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 41.7 bits (97), Expect = 2e-05
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 742
G + +RN+ F +++ + E+ + FG+LK+VR+ +G F +F+T+ A+
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-SKGCAFAQFMTQEAAQ 64
Query: 743 RAMKAL-----CQSTHLYGRRLVLEWAEEADN 769
+ + A L GR+L ++ A D
Sbjct: 65 KCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 29.8 bits (66), Expect = 0.31
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 218 PVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLA--------SVRTTFLGMAYIGFKDEK 269
P + T+ ++NL +++ L + G A+ F ++
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 270 NCNKALNK-------NKSFWKGKQLNI-YKYSKDNSA 298
K L G+QL + ++D +A
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 98
Score = 27.1 bits (59), Expect = 3.2
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQA 496
+ + + ++NL + + L + + FGDL V V + +F+ + A
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 63
Query: 497 KAAFNSLAY------TKFKEVPLYLEWA 518
+ + + K L ++ A
Sbjct: 64 QKCLAAASLEAEGGGLKLDGRQLKVDLA 91
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 55.6 bits (133), Expect = 2e-10
Identities = 14/78 (17%), Positives = 29/78 (37%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+++ N + T+ ++ L + +A I + ++ FA + E A +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 398 LDGTVFLGRMLHLIPGKP 415
L+G G L P
Sbjct: 63 LNGLKIEGYTLVTKVSNP 80
Score = 49.8 bits (118), Expect = 2e-08
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+ TL++ N + T+ +IR + + A S S + ++ ++E
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVV-----ALSIRLPSLRFNTSRRFAYIDVTSKED 55
Query: 640 LNQALKVLQNSSLDEHQIELKRSN 663
++ L ++ + + K SN
Sbjct: 56 ARYCVEKLNGLKIEGYTLVTKVSN 79
Score = 45.2 bits (106), Expect = 9e-07
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ + N P Q + +L + + + R F +++ +K +A+ ++
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSI-RLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 747 ALCQSTHLYGRRLVLEWAE 765
L + G LV + +
Sbjct: 62 KL-NGLKIEGYTLVTKVSN 79
Score = 30.5 bits (68), Expect = 0.12
Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY------GITGLVEFLQKNQAKAAFNSL 503
+ + N P +++ L + + + P ++ K A+ L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 504 AYTKFKEVPLYLEWA 518
K + L + +
Sbjct: 64 NGLKIEGYTLVTKVS 78
Score = 28.6 bits (63), Expect = 0.69
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASVRTTF--------LGMAYIGFKDEKNCNKALNK 277
T+ + N P +++++ + + + ++ AYI +++ + K
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 278 -NKSFWKGKQLNIYKYSK 294
N +G L K S
Sbjct: 63 LNGLKIEGYTLVT-KVSN 79
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 55.9 bits (134), Expect = 3e-10
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+IFV L Y T+ L K FE +G + E ++ D++T K++G+ VT A +A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 398 LDGTVFLGRMLHL----IPGKPKENEGN 421
+ GR ++ + KP+ +
Sbjct: 72 PNPI-IDGRKANVNLAYLGAKPRSLQTG 98
Score = 47.8 bits (113), Expect = 2e-07
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
++ T +++ L +++T+ S+R++F+ G I V + S GYGFV
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ-----TGKSRGYGFVTM 59
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRSNR 664
R + +A K N +D + + +
Sbjct: 60 ADRAAAERACKDP-NPIIDGRKANVNLAYL 88
Score = 45.1 bits (106), Expect = 1e-06
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 683 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 742
T +KI V +P+ + + + F+ FG+++ +G RG+GFV + A+
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV-VITDRQTGKSRGYGFVTMADRAAAE 66
Query: 743 RAMKALCQSTHLYGRRLVLEWAEE 766
RA K + GR+ + A
Sbjct: 67 RACKDPNPI--IDGRKANVNLAYL 88
Score = 34.7 bits (79), Expect = 0.008
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 223 QYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GMAYIGFKDEKNCNKA 274
+ I V LP L+ YF+ G ++ D +A
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 275 LNKNKSFWKGKQLNI 289
G++ N+
Sbjct: 69 CKDPNPIIDGRKANV 83
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.5 bits (133), Expect = 3e-10
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
F+ NL Y VTE+ + + F A + ++ KGF F + +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL-LSALS 75
Query: 398 LDGTVFLGRMLHLIPGKPKENE 419
L+ + + + +++
Sbjct: 76 LNEESLGNKRIRVDVADQAQDK 97
Score = 47.0 bits (111), Expect = 4e-07
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 677 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736
S + K + N+P+ + ++E F+ VRLP++ +GFG+ EF
Sbjct: 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNI-SAVRLPREPSNPERLKGFGYAEFE 65
Query: 737 TKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769
+ A+ L +R+ ++ A++A +
Sbjct: 66 DLDSLLSALS--LNEESLGNKRIRVDVADQAQD 96
Score = 46.3 bits (109), Expect = 7e-07
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
P T ++ NL ++ TE+SI+ F+ A +P+ F
Sbjct: 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA----- 62
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664
+F +SL AL L SL +I + +++
Sbjct: 63 EFEDLDSLLSALS-LNEESLGNKRIRVDVADQ 93
Score = 33.5 bits (76), Expect = 0.016
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 215 SKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP--------LPLASVRTTFLGMAYIGFK 266
S + + K +T + NLP V ++ +K +F+ S G Y F+
Sbjct: 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 65
Query: 267 DEKNCNKALNKNKSFWKGKQLNIYKYSKDNSAKYSG 302
D + AL+ N+ K++ + + K SG
Sbjct: 66 DLDSLLSALSLNEESLGNKRIRV-DVADQAQDKDSG 100
Score = 32.8 bits (74), Expect = 0.034
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 7/77 (9%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAAFN 501
+ NLPY +K F L EF + +A +
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 502 SLAYTKFKEVPLYLEWA 518
L + ++ A
Sbjct: 76 -LNEESLGNKRIRVDVA 91
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.1 bits (132), Expect = 4e-10
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+FV N+ Y TE+ L +F + GP+ L D+ET K KG+ + E A A ++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 398 LDGTVFLGRMLHLIPGKPKEN 418
L+G F GR L + ++N
Sbjct: 70 LNGREFSGRALRVDNAASEKN 90
Score = 45.1 bits (106), Expect = 2e-06
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ V NIP++A + +++++F G + RL +G+GF E+ + A AM+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-PKGYGFCEYQDQETALSAMR 68
Query: 747 ALCQSTHLYGRRLVLEWAEEADNVEDIRKR 776
L GR L ++ A N E+++
Sbjct: 69 NL-NGREFSGRALRVDNAASEKNKEELKSL 97
Score = 45.1 bits (106), Expect = 2e-06
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 576 EPEPD---TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
+P D ++++ N+ + +TE+ ++ F + GP+ + GYGF
Sbjct: 1 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV-----VSFRLVYDRETGKPKGYGFC 55
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESE 669
++ +E+ A++ L + + + E
Sbjct: 56 EYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 92
Score = 35.1 bits (80), Expect = 0.006
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 218 PVHKRQYHTIVVKNLPAGVKKKDLKAYFK--------PLPLASVRTTFLGMAYIGFKDEK 269
P R ++ V N+P ++ LK F L G + ++D++
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61
Query: 270 NCNKALNK-NKSFWKGKQLNI 289
A+ N + G+ L +
Sbjct: 62 TALSAMRNLNGREFSGRALRV 82
Score = 32.8 bits (74), Expect = 0.031
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKA 498
RS R + V N+PY LK +F G + + T G E+ + A +
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 499 AFNSLAYTKFKEVPLYLEWA 518
A +L +F L ++ A
Sbjct: 66 AMRNLNGREFSGRALRVDNA 85
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 54.9 bits (131), Expect = 5e-10
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ N+ +++T+ D+ + E + + + G ALV F + A ++ + L
Sbjct: 11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-L 69
Query: 399 DGTVFLGRMLHLIPGKPKE 417
GR + ++
Sbjct: 70 HRKKLNGREAFVHVVTLED 88
Score = 43.7 bits (102), Expect = 5e-06
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
E +I N+ F+ T+ + + + + + +G V
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQ-----GLGQALV 55
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEA 670
QF + ++ + L L+ + + E
Sbjct: 56 QFKNEDDARKSER-LHRKKLNGREAFVHVVTLEDMREI 92
Score = 36.0 bits (82), Expect = 0.002
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ NIPF + +V + + + +G G V+F +++A+++ +
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSER 68
Query: 747 ALCQSTHLYGRRLVLEWAEEADNVEDIRKR 776
L GR + D E +
Sbjct: 69 --LHRKKLNGREAFVHVVTLEDMREIEKNP 96
Score = 28.3 bits (62), Expect = 1.4
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 446 SKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITG------LVEFLQKNQAKAA 499
+K + N+P+ D+ E + G LV+F ++ A+ +
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 66
Query: 500 FNSLAYTKFKEVPLYLEWAPE 520
L K ++
Sbjct: 67 E-RLHRKKLNGREAFVHVVTL 86
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 54.0 bits (129), Expect = 6e-10
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+IFV LS T +D+ FE++G + + +L DK T++ +GF VTF + + +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE- 59
Query: 398 LDGTVFLGRMLH 409
+ +M+
Sbjct: 60 IHFHEINNKMVE 71
Score = 46.6 bits (110), Expect = 2e-07
Identities = 12/79 (15%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+++ L+ N+T + ++ +F++ G + G+GFV F + + + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKV-----DDAMLMFDKTTNRHRGFGFVTFESEDIVEK 56
Query: 643 ALKVLQNSSLDEHQIELKR 661
+ + ++ +E K+
Sbjct: 57 VCE-IHFHEINNKMVECKK 74
Score = 45.5 bits (107), Expect = 5e-07
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
KI V + +V+ F+ FG++ + HRGFGFV F +++ ++ +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAM-LMFDKTTNRHRGFGFVTFESEDIVEKVCE 59
Query: 747 ALCQSTHLYGRRLVLEWA 764
+ + + + A
Sbjct: 60 I--HFHEINNKMVECKKA 75
Score = 35.1 bits (80), Expect = 0.003
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLGM--------AYIGFKDEKNCNKALNKN 278
I V L +D+K YF+ ++ F+ E K +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 279 KSFWKGKQLNI 289
K +
Sbjct: 62 FHEINNKMVEC 72
Score = 30.1 bits (67), Expect = 0.14
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQAKAAFNSL 503
I V L T D+K FE FG + ++ T G V F ++ + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 504 AYTKFKEVPLYLEWA 518
+ + + + A
Sbjct: 61 HFHEINNKMVECKKA 75
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 54.3 bits (130), Expect = 8e-10
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 336 SGRIFVRNLSYTVTEDDLTK----LFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHA 391
+ I++ NL+ + +D+L K +F ++G + ++++ K +G A V F A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS---LKMRGQAFVIFKEVSSA 59
Query: 392 TQAYQHLDGTVFLGRMLHLIPGKPKEN 418
T A + + G F + + + K +
Sbjct: 60 TNALRSMQGFPFYDKPMRIQYAKTDSD 86
Score = 50.8 bits (121), Expect = 1e-08
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
I + N+ + K+ E+++ A L + S RG FV F + A A++
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 747 ALCQSTHLYGRRLVLEWAEE 766
++ Q Y + + +++A+
Sbjct: 65 SM-QGFPFYDKPMRIQYAKT 83
Score = 49.3 bits (117), Expect = 4e-08
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P+ T+YI NLN +D +++ + D G FV F
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFS----RFGQILDILVSRSLKMRGQAFVIFKEVS 57
Query: 639 SLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSNVAK 682
S AL+ +Q + + ++ + K S +AK
Sbjct: 58 SATNALRSMQGFPFYDKPMRIQYA-----------KTDSDIIAK 90
Score = 33.9 bits (77), Expect = 0.009
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 445 RSKRIILVKNLPYRTLPTDLK----ALFEPFGDLGRVLVPPYGIT---GLVEFLQKNQAK 497
R I + NL + +LK A+F FG + +LV V F + + A
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 498 AAFNSLAYTKFKEVPLYLEWA 518
A S+ F + P+ +++A
Sbjct: 61 NALRSMQGFPFYDKPMRIQYA 81
Score = 33.1 bits (75), Expect = 0.019
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKPL---------PLASVRTTFLGMAYIGFKDEKNCN 272
R HTI + NL +KK +LK + L S G A++ FK+ +
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 273 KALNK-NKSFWKGKQLNIYKYSKDNS 297
AL + K + I +Y+K +S
Sbjct: 61 NALRSMQGFPFYDKPMRI-QYAKTDS 85
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 53.5 bits (128), Expect = 1e-09
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ ++V +T L F +G + ++ + + A VT+ E A QA
Sbjct: 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQA 55
Query: 395 YQHLDGTVFLGRMLHLIPGKPK 416
L+GT L + + +
Sbjct: 56 VAELNGTQVESVQLKVNIARKQ 77
Score = 48.5 bits (115), Expect = 6e-08
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 577 PEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYT 636
P TLY+ + T +R F G I ++ FV +
Sbjct: 2 PRKGNTLYVYGEDM--TPTLLRGAFSPFGNIIDLS-----------MDPPRNCAFVTYEK 48
Query: 637 RESLNQALKVLQNSSLDEHQIELKRSNR 664
ES +QA+ L + ++ Q+++ + +
Sbjct: 49 MESADQAVAELNGTQVESVQLKVNIARK 76
Score = 39.6 bits (92), Expect = 7e-05
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
A + G+ + V + + F FG + R FV +
Sbjct: 1 APRKGNTLYVYGED--MTPTLLRGAFSPFG-------NIIDLSMDPPRNCAFVTYEKMES 51
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEE 766
A +A+ L T + +L + A +
Sbjct: 52 ADQAVAEL-NGTQVESVQLKVNIARK 76
Score = 34.2 bits (78), Expect = 0.006
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
R + V PT L+ F PFG++ + + P V + + A A L
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELN 60
Query: 505 YTKFKEVPLYLEWA 518
T+ + V L + A
Sbjct: 61 GTQVESVQLKVNIA 74
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 54.9 bits (131), Expect = 1e-09
Identities = 29/123 (23%), Positives = 48/123 (39%)
Query: 304 ADDNNNASMENIKAKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPL 363
D + + + Q + + V + TV E L +LFE+YGP+
Sbjct: 10 YDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPI 69
Query: 364 AEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKPKENEGNVD 423
V + D+ET +++G+ V F A QA L+G L + L + +
Sbjct: 70 ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIA 129
Query: 424 GKV 426
G V
Sbjct: 130 GAV 132
Score = 46.8 bits (110), Expect = 1e-06
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 5/128 (3%)
Query: 552 NTAEEDNQQGVPEVEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVT 611
+ Q + + EP+ L + + E +R+ F++ GPI
Sbjct: 14 GQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPI---- 69
Query: 612 VARKKDPKSPGQFLSMGYGFVQFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEAT 671
K S GYGFV+F + S QA+ L ++ ++++ + +
Sbjct: 70 -ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGI 128
Query: 672 TVKRKSSN 679
N
Sbjct: 129 AGAVGDGN 136
Score = 42.6 bits (99), Expect = 3e-05
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 661 RSNRNLESEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK 720
+ + + + + N ++V IP + ++ +LF+ +G
Sbjct: 18 QLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGP-IESVKIVC 76
Query: 721 MVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAEE 766
+ RG+GFV+F + + A++A+ L ++ +RL + A
Sbjct: 77 DRETRQSRGYGFVKFQSGSSAQQAIAGL-NGFNILNKRLKVALAAS 121
Score = 34.1 bits (77), Expect = 0.021
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 200 KSKDTAPSDPSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFLG 259
+ + P ++ ++V +P V + L+ F+
Sbjct: 18 QLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD 77
Query: 260 M--------AYIGFKDEKNCNKALNK-NKSFWKGKQLNI-YKYSKDNSAKYSGAADDNN 308
++ F+ + +A+ N K+L + S +GA D N
Sbjct: 78 RETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGN 136
Score = 33.0 bits (74), Expect = 0.047
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGIT------GLVEFLQKNQA 496
E R ++V +P L+ LFE +G + V + T G V+F + A
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 497 KAAFNSLAYTKFKEVPLYLEWA 518
+ A L L + A
Sbjct: 98 QQAIAGLNGFNILNKRLKVALA 119
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.4 bits (125), Expect = 2e-09
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+IFV + E L FE+YG + + + D+ + K +GFA VTF + +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD-SVDKIVI 62
Query: 398 LDGTVFLGRMLH 409
G
Sbjct: 63 QKYHTVNGHNCE 74
Score = 44.7 bits (105), Expect = 1e-06
Identities = 12/81 (14%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 582 TLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLN 641
+++ + ++ E +R +F++ G I + + + G+ FV F +S++
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS-----GKKRGFAFVTFDDHDSVD 58
Query: 642 QALKVLQNSSLDEHQIELKRS 662
+ + + +++ H E++++
Sbjct: 59 KIVI-QKYHTVNGHNCEVRKA 78
Score = 35.5 bits (81), Expect = 0.002
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
KI V I ++ + + F+ +G+++ + + RGF FV F + + +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KRGFAFVTFDDHDSVDKIVI 62
Query: 747 ALCQSTHLYGRRLVLEWA 764
+ + G + A
Sbjct: 63 --QKYHTVNGHNCEVRKA 78
Score = 31.6 bits (71), Expect = 0.050
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GMAYIGFKDEKNCNKALNK 277
I V + ++ L+ YF+ V G A++ F D + +K + +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 278 NKSFWKGKQLNIYK 291
G + K
Sbjct: 64 KYHTVNGHNCEVRK 77
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 50.9 bits (121), Expect = 9e-09
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 335 ESGRIFVRNLSYTVT-EDDLTKLFEKY-GPLAEVILPIDKETDKTKGFALVTFLMPEHAT 392
E I +RNLS + E+ L + FE + I KE A + F + A
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 393 QAYQHLDGTVFLGRMLHLIPGKPK 416
+A Q ++ ++ R + + K
Sbjct: 63 RALQ-MNRSLLGNREISVSLADKK 85
Score = 42.8 bits (100), Expect = 8e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 685 GSKILVRNIPFQA-KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 743
G +I++RN+ + ++ + E F+ FG ++ + +P + F+ F K+ A+R
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 744 AMKALCQSTHLYGRRLVLEWAE 765
A++ + L R + + A+
Sbjct: 64 ALQM--NRSLLGNREISVSLAD 83
Score = 38.6 bits (89), Expect = 2e-04
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 581 TTLYIKNLNFNST-EDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+ I+NL+ E+ +R F+ G I + F+ F ++S
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSI----EKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 640 LNQALKVLQNSSLDEHQIELKRSNR 664
+AL+ + S L +I + +++
Sbjct: 61 AERALQ-MNRSLLGNREISVSLADK 84
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 50.9 bits (121), Expect = 1e-08
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S I V+NL ++ L + Y D+ K A VT L E A A
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAI 57
Query: 396 QHLDGTVFLGRMLHLIPGKPK 416
Q F G+ L +
Sbjct: 58 QMFHQYSFRGKDLIVQLQPTD 78
Score = 47.4 bits (112), Expect = 1e-07
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
S ILV+N+P + EV +L K + K ++ FV + +A+ A+
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD--------LKYCYVDRNKRTAFVTLLNGEQAQNAI 57
Query: 746 KALCQSTHLYGRRLVLEWAE 765
+ G+ L+++
Sbjct: 58 QMF-HQYSFRGKDLIVQLQP 76
Score = 43.6 bits (102), Expect = 4e-06
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
+ + +KNL +S + K K + FV E
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD------------LKYCYVDRNKRTAFVTLLNGEQA 53
Query: 641 NQALKVLQNSSLDEHQIELKRSNRN 665
A+++ S + ++ +
Sbjct: 54 QNAIQMFHQYSFRGKDLIVQLQPTD 78
Score = 40.1 bits (93), Expect = 6e-05
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK 509
ILVKNLP + ++ L + + + V L QA+ A F+
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAF-VTLLNGEQAQNAIQMFHQYSFR 66
Query: 510 EVPLYLEWAP 519
L ++ P
Sbjct: 67 GKDLIVQLQP 76
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 49.7 bits (118), Expect = 3e-08
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+ R++V L + L + F+++G + + K FA + + + A A
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTID------HVKGDSFAYIQYESLDAAQAAC 70
Query: 396 QHLDGTVFLGRMLHLI--PGKPKENEG 420
+ G G L K + G
Sbjct: 71 AKMRGFPLGGPDRRLRVDFAKSGPSSG 97
Score = 44.7 bits (105), Expect = 2e-06
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
+ P T L++ L N++ ++ R F + G I ++ + ++Q+
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTID-----------HVKGDSFAYIQYE 61
Query: 636 TRESLNQALKVLQNSSLDEHQIELK 660
+ ++ A ++ L L+
Sbjct: 62 SLDAAQAACAKMRGFPLGGPDRRLR 86
Score = 38.5 bits (89), Expect = 3e-04
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+++ V + + + F FG + + F ++++ + + A+ A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFG-------SIRTIDHVKGDSFAYIQYESLDAAQAAC 70
Query: 746 KALCQSTHLYG--RRLVLEWAE 765
+ + L G RRL +++A+
Sbjct: 71 AKM-RGFPLGGPDRRLRVDFAK 91
Score = 36.6 bits (84), Expect = 0.002
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 507
+ V L T L F+ FG + + +++ + A+AA +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77
Query: 508 F--KEVPLYLEWA 518
+ L +++A
Sbjct: 78 LGGPDRRLRVDFA 90
Score = 31.6 bits (71), Expect = 0.087
Identities = 10/68 (14%), Positives = 14/68 (20%), Gaps = 3/68 (4%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKPLPLAS--VRTTFLGMAYIGFKDEKNCNKALNK-NKSF 281
+ V L L F AYI ++ A K
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77
Query: 282 WKGKQLNI 289
G +
Sbjct: 78 LGGPDRRL 85
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 49.4 bits (117), Expect = 4e-08
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V L + + DL + G + + G +V +L E A +
Sbjct: 17 RVLVSGLPPSGSWQDLKDHMREAG-------DVCYADVQKDGMGMVEYLRKEDMEYALRK 69
Query: 398 LDGTVFLGRMLHLIPGKPKENEGN 421
LD T F + +
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSS 93
Score = 43.6 bits (102), Expect = 4e-06
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
D + + L + + ++ H ++ G G V++
Sbjct: 10 PTRRSDFRVLVSGLPPSGSWQDLKDHMREA------------GDVCYADVQKDGMGMVEY 57
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRSNR 664
+E + AL+ L ++ H+ E
Sbjct: 58 LRKEDMEYALRKLDDTKFRSHEGETSYIRV 87
Score = 42.5 bits (99), Expect = 1e-05
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 215 SKAPVHKRQYHTIVVKNLPAGVKKKDLKAYF-KPLPLASVRTTFLGMAYIGFKDEKNCNK 273
S P +R ++V LP +DLK + + + GM + + +++
Sbjct: 6 SGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEY 65
Query: 274 ALNK-NKSFWKGKQLNIYKYSKDNSAKYSG 302
AL K + + ++ + Y + + SG
Sbjct: 66 ALRKLDDTKFRSHEGET-SYIRVYPERSSG 94
Score = 39.0 bits (90), Expect = 2e-04
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 681 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
+++ ++LV +P ++++ + G G VE++ K +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREA--------GDVCYADVQKDGMGMVEYLRKED 62
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAEE 766
+ A++ L T +
Sbjct: 63 MEYALRKL-DDTKFRSHEGETSYIRV 87
Score = 31.7 bits (71), Expect = 0.075
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
RS +LV LP DLK GD+ V G G+VE+L+K + A L
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-MGMVEYLRKEDMEYALRKLD 71
Query: 505 YTKFKEVPLYLEWA 518
TKF+ +
Sbjct: 72 DTKFRSHEGETSYI 85
Score = 28.2 bits (62), Expect = 1.2
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+ + LK E + + + Y R++ + AL ++T S
Sbjct: 25 PSGSWQDLKDHMREA------GDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSH 78
Query: 87 RIKVEK 92
+
Sbjct: 79 EGETSY 84
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.4 bits (117), Expect = 5e-08
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ +R L Y TE+D+ F P+ + G A V F E A A
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVH--IEIGPDGRVTGEADVEFATHEDAVAAMA-K 74
Query: 399 DGTVFLGRMLHLIPGKPKENEGN 421
D R + L G+
Sbjct: 75 DKANMQHRYVELFLNSTAGTSGS 97
Score = 47.0 bits (111), Expect = 4e-07
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 677 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 736
S+ TG + +R +P++A ++++ F ++ G G VEF
Sbjct: 7 GSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFA 63
Query: 737 TKNEAKRAMKALCQSTHLYGRRLVLEWAEEADN 769
T +A AM ++ R + L A
Sbjct: 64 THEDAVAAMA--KDKANMQHRYVELFLNSTAGT 94
Score = 46.7 bits (110), Expect = 5e-07
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
+ ++++ L + +TE+ I F P+ + V+F
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTG-------EADVEFA 63
Query: 636 TRESLNQALKVLQNSSLDEHQIELKRSNR 664
T E A+ +++ +EL ++
Sbjct: 64 THEDAVAAMA-KDKANMQHRYVELFLNST 91
Score = 37.0 bits (85), Expect = 0.001
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 215 SKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKP------LPLASVRTTFLGMAYIGFKDE 268
S + H + ++ LP + D+ +F P G A + F
Sbjct: 6 SGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATH 65
Query: 269 KNCNKALNKNKSFWKGKQLNIYKYSKDNSAK 299
++ A+ K+K+ + + + ++ S ++
Sbjct: 66 EDAVAAMAKDKANMQHRYVELFLNSTAGTSG 96
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.0 bits (116), Expect = 7e-08
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 321 KSQEDSVQFA-EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKG 379
K+ Q A + + +++ NL ++ E +L + + +G + + + ++G
Sbjct: 2 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR-ILRDSSGTSRG 60
Query: 380 FALVTFLMPEHATQAYQHLDGTVFLGRMLHLIPGKP 415
E H +G P +P
Sbjct: 61 VGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 96
Score = 38.6 bits (89), Expect = 3e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 565 VEENVEEDEEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQF 624
V+ + + +E++P T LYI NL + E + K G + S + R
Sbjct: 6 VQAQMAKQQEQDP---TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT----- 57
Query: 625 LSMGYGFVQFYTRESLNQALKVLQNSSLD 653
S G GF + + E + +
Sbjct: 58 -SRGVGFARMESTEKCEAVIGHFNGKFIK 85
Score = 34.8 bits (79), Expect = 0.007
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 669 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 728
+A+ V+ + + +Q + + + N+P + E+E + K FG++ R+ + G+ R
Sbjct: 2 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT--SR 59
Query: 729 GFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLEWAE 765
G GF + + + + + V E
Sbjct: 60 GVGFARMESTEKCEAVIGHF-NGKFIKTPPGVSAPTE 95
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 49.0 bits (116), Expect = 7e-08
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 336 SGRIFVRNLSYTVTEDDLTK-----LFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
S + + V + T+ LF Y + F P
Sbjct: 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLS 58
Query: 391 ATQAYQHLDGTVFLGRMLHLIPGKPKE 417
A A L T FLG+ + L +
Sbjct: 59 AADARLRLHKTEFLGKEMKLYFAQTLH 85
Score = 44.4 bits (104), Expect = 3e-06
Identities = 9/92 (9%), Positives = 20/92 (21%), Gaps = 16/92 (17%)
Query: 578 EPDTTLYIKNLNF-----NSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
+ L N + T F+ + + +
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----------KRVRI 51
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNR 664
F S A L + +++L +
Sbjct: 52 NFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83
Score = 43.6 bits (102), Expect = 5e-06
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 686 SKILVRNIPF-----QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 740
S ++ +++ E LF+ + + + K + F
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-------SFKRVRINFSNPLS 58
Query: 741 AKRAMKALCQSTHLYGRRLVLEWAE 765
A A L + T G+ + L +A+
Sbjct: 59 AADARLRLHK-TEFLGKEMKLYFAQ 82
Score = 36.3 bits (83), Expect = 0.002
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 450 ILVKNLP-----YRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLA 504
++ ++LF + + F A A L
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLH 67
Query: 505 YTKFKEVPLYLEWA 518
T+F + L +A
Sbjct: 68 KTEFLGKEMKLYFA 81
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 46.4 bits (109), Expect = 3e-07
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 581 TTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESL 640
TT+ +KNL + ++ + ++FK CGPI V VA + ++F +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR-------FARIEFARYDGA 53
Query: 641 NQALKVLQNSSLDEHQIELKR 661
A+ + + +++I +
Sbjct: 54 LAAITK-THKVVGQNEIIVSH 73
Score = 40.6 bits (94), Expect = 3e-05
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ +LV+N+P Q++V + FK G + V + + + F +EF + A A+
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK---NFRFARIEFARYDGALAAI 57
Query: 746 KALCQSTHLYGRRLVLEWA 764
+ +++
Sbjct: 58 T--KTHKVVGQNEIIVSHL 74
Score = 40.2 bits (93), Expect = 4e-05
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ V+NL + ++ + K F+ GP+ V + + + A
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFAR---IEFARYDGALAAITK 59
Query: 399 DGTVFLGRMLH 409
V +
Sbjct: 60 THKVVGQNEII 70
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 46.8 bits (111), Expect = 4e-07
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 343 NLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDGTV 402
L +DL K+G + +++L G A V+F PE A Q LDG
Sbjct: 26 PLVLNEIREDLRVECSKFGQIRKLLLF----DRHPDGVASVSFRDPEEADYCIQTLDGRW 81
Query: 403 FLGRMLHLIPGKPKEN 418
F GR + +
Sbjct: 82 FGGRQITAQAWDGTTD 97
Score = 42.2 bits (99), Expect = 1e-05
Identities = 9/83 (10%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 9 VVPRNHISLLDLDEVEFIYKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHRE 68
V+ +N +D ++ + +E L+ + + G + + + A + +
Sbjct: 11 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL---LLFDRHPDGVASVSFRDP 67
Query: 69 DQAQAALDYFNNTYVFSSRIKVE 91
++A + + + +I +
Sbjct: 68 EEADYCIQTLDGRWFGGRQITAQ 90
Score = 41.8 bits (98), Expect = 2e-05
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 703 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKALCQSTHLYGRRLVLE 762
E+L + +R G V F EA ++ L GR++ +
Sbjct: 34 EDLRVECSKFGQIRKLLLFDRH--PDGVASVSFRDPEEADYCIQTL-DGRWFGGRQITAQ 90
Query: 763 WA 764
Sbjct: 91 AW 92
Score = 36.4 bits (84), Expect = 0.001
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 20/93 (21%)
Query: 577 PEPDTTLYIKNL-----------NFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFL 625
+ + IKN+ N + +R K G I + + +
Sbjct: 5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPD------- 57
Query: 626 SMGYGFVQFYTRESLNQALKVLQNSSLDEHQIE 658
G V F E + ++ L QI
Sbjct: 58 --GVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 45.6 bits (107), Expect = 7e-07
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 338 RIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
R+ V L + + DL + G + G +V F+ E T A +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAG-------DVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 398 LDGTVFLGRMLHLIPGKPKENEGNVDGK 425
LD T F + K +
Sbjct: 55 LDNTKFRSHEGETAYIRVKVDGPRSPSY 82
Score = 31.0 bits (69), Expect = 0.11
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+ + L + + ++ H ++ G G V+F +E +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREA------------GDVCYADVYRDGTGVVEFVRKEDMTY 50
Query: 643 ALKVLQNSSLDEHQIELKRSNRNLE 667
A++ L N+ H+ E ++
Sbjct: 51 AVRKLDNTKFRSHEGETAYIRVKVD 75
Score = 29.5 bits (65), Expect = 0.31
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+++V +P ++++ + G G VEF+ K + A++
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA--------GDVCYADVYRDGTGVVEFVRKEDMTYAVR 53
Query: 747 ALCQSTHLYGRRLVLEWAEE 766
L +T +
Sbjct: 54 KL-DNTKFRSHEGETAYIRV 72
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.1 bits (109), Expect = 8e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 343 NLSYTVTEDDLTKLFEKYGPL--AEVILPIDKETDKTKGFALVTFLMPEHATQAYQHLDG 400
+ Y +D+ KYG + E+ P+D G V F +A Q L G
Sbjct: 21 DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 80
Query: 401 TVFLGRMLH 409
F R++
Sbjct: 81 RKFANRVVV 89
Score = 40.4 bits (94), Expect = 7e-05
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 689 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRAMKA 747
L+ + ++ +V + +G +K + +P+ + G G FVEF + + ++AM+
Sbjct: 18 LLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 77
Query: 748 LCQSTHLYGRRLVLEWAEEAD 768
L R +V ++ +
Sbjct: 78 L-TGRKFANRVVVTKYCDPDS 97
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 45.5 bits (107), Expect = 1e-06
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDK 376
AKH + + ++ +S + L V+ + L + EK G + ++
Sbjct: 1 AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL------MPP 54
Query: 377 TKGFALVTFLMPEHATQAYQHLDGTVFLGRMLHLIP 412
K ++ + E + +AY L+G + + I
Sbjct: 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90
Score = 41.2 bits (96), Expect = 4e-05
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 13/89 (14%)
Query: 570 EEDEEREPEPDTTLYIK--NLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSM 627
E E +L + L + + + +KCG + ++ +
Sbjct: 8 HEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL-----------MPPNK 56
Query: 628 GYGFVQFYTRESLNQALKVLQNSSLDEHQ 656
Y F ++ T E +A L + +
Sbjct: 57 PYSFARYRTTEESKRAYVTLNGKEVVDDL 85
Score = 35.5 bits (81), Expect = 0.003
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 434 KLDAFNQVVEARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQK 493
+ + V A ++ L L + E G + +L+PP +
Sbjct: 7 RHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTT 66
Query: 494 NQAKAAFNSLAYTKFKE-----VPLYLEWA 518
++K A+ +L + + + LYL +
Sbjct: 67 EESKRAYVTLNGKEVVDDLGQKITLYLNFV 96
Score = 34.3 bits (78), Expect = 0.011
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 692 NIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKAL 748
+ ++++ + + G + + +P ++ + F + T E+KRA L
Sbjct: 27 GLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYSFARYRTTEESKRAYVTL 76
Score = 32.0 bits (72), Expect = 0.057
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
+++ QL E+ G V + + + ++F Y ++++ A N V
Sbjct: 30 NGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84
Query: 87 R 87
Sbjct: 85 L 85
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 45.3 bits (106), Expect = 1e-06
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 335 ESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+F+ NL+ + +L + + +D T + F V F E +A
Sbjct: 12 TPFNLFIGNLNPNKSVAELKVAISELFAK-NDLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 395 YQHLDGTVFLGRMLHLIPGKPK 416
L G G + L K +
Sbjct: 71 L-ELTGLKVFGNEIKLEKPKGR 91
Score = 41.5 bits (96), Expect = 2e-05
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
E E L+I NLN N + ++ + + V + + +G+V
Sbjct: 6 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGT------NRKFGYV 59
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRS 662
F + E L +AL+ L + ++I+L++
Sbjct: 60 DFESAEDLEKALE-LTGLKVFGNEIKLEKP 88
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 45.6 bits (107), Expect = 1e-06
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 674 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 733
KR S + G + ++ +PF+A+ V + FK ++ +G G GFV
Sbjct: 7 KRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFV 65
Query: 734 EFITKNEAKRAMKALCQSTHLYGRRLVLEWAEEADNVEDIRKRTNR 779
EF + + K A+ Q ++ R + + + +E I R
Sbjct: 66 EFRNEADYKAALCRHKQ--YMGNRFIQVHPITKKGMLEKIDMIRKR 109
Score = 38.3 bits (88), Expect = 4e-04
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 6/107 (5%)
Query: 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
E +Y+K L F + + FKK + GFV
Sbjct: 11 SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-----GFV 65
Query: 633 QFYTRESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKRKSSN 679
+F AL + I++ + E + RK
Sbjct: 66 EFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQ 111
Score = 30.2 bits (67), Expect = 0.29
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 209 PSVPPVSKAPVHKRQYHTIVVKNLPAGVKKKDLKAYFKPLPLASVRTTFL--------GM 260
PS S++ + +K LP + K + +FK L + G
Sbjct: 3 PSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 62
Query: 261 AYIGFKDEKNCNKALNKNKSFWKGKQLNIYKYSKDN 296
++ F++E + AL ++K + + + ++ +K
Sbjct: 63 GFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 98
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 45.1 bits (106), Expect = 2e-06
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 336 SGRIFVRNLS-YTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQA 394
+ + V NL+ VT L LF YG + V + +K+ ALV A A
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLA 56
Query: 395 YQHLDGTVFLGRMLHLIPGKPKE 417
HL+G G+ + + K +
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQN 79
Score = 40.5 bits (94), Expect = 7e-05
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 11/86 (12%)
Query: 581 TTLYIKNLNFNS-TEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
+ L + NLN T S+ F G + V + F VQ
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI----------LFNKKENALVQMADGNQ 52
Query: 640 LNQALKVLQNSSLDEHQIELKRSNRN 665
A+ L L I + S
Sbjct: 53 AQLAMSHLNGHKLHGKPIRITLSKHQ 78
Score = 32.8 bits (74), Expect = 0.034
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 27 YKITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYFNNTYVFSS 86
++T + L F G V V++ + + A + +QAQ A+ + N +
Sbjct: 13 ERVTPQSLFILFGVYGDVQRVKILF----NKKENALVQMADGNQAQLAMSHLNGHKLHGK 68
Query: 87 RIKVEKCSNLGDTTKPKSWSKYAPDSSAY 115
I++ S + P+ + + Y
Sbjct: 69 PIRITL-SKHQNVQLPREGQEDQGLTKDY 96
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 43.2 bits (101), Expect = 8e-06
Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 13/94 (13%)
Query: 573 EEREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFV 632
+ ++++ L + E + +K G I V + V
Sbjct: 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------KRQALV 56
Query: 633 QFYTRESLNQALKVLQNS--SLDEHQIELKRSNR 664
+F +S + + + + Q S
Sbjct: 57 EFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90
Score = 42.9 bits (100), Expect = 9e-06
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 330 AEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPE 389
++ S + VR L +V E DL + EK+G + V++ K ALV F +
Sbjct: 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENID 62
Query: 390 HATQAYQHLD--GTVFLGRMLHLIPGKPKE 417
A + G+ K
Sbjct: 63 SAKECVTFAADVPVYIAGQQAFFNYSTSKR 92
Score = 40.2 bits (93), Expect = 9e-05
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 677 SSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 735
S + K + S ++ VR + ++++ E + FG + +V + + VEF
Sbjct: 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-------FKRQALVEF 58
Query: 736 ITKNEAKRAMKAL-CQSTHLYGRRLVLEWA 764
+ AK + ++ G++ ++
Sbjct: 59 ENIDSAKECVTFAADVPVYIAGQQAFFNYS 88
Score = 39.4 bits (91), Expect = 2e-04
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTK 507
++ V+ L + DL E FG + V++ P+ LVEF + AK A
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVP 75
Query: 508 F--KEVPLYLEWA 518
+ ++
Sbjct: 76 VYIAGQQAFFNYS 88
Score = 33.6 bits (76), Expect = 0.019
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 226 TIVVKNLPAGVKKKDLKAYFKPLPLAS--VRTTFLGMAYIGFKDEKNCNKA---LNKNKS 280
+ V+ L V + DL + + F A + F++ + +
Sbjct: 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPV 76
Query: 281 FWKGKQLNIYKYSKDNSAKYSGAADDNN 308
+ G+Q YS G + ++
Sbjct: 77 YIAGQQAFF-NYSTSKRITRPGNSGPSS 103
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.0 bits (98), Expect = 1e-05
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
S + + N+ +V+E+DL LF G ++ K K + AL+ E A QA
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGG----VVKGFKFFQKDRKMALIQMGSVEEAVQAL 65
Query: 396 QHLDGTVFL-GRMLHLIPGKPK 416
L L + K
Sbjct: 66 IDLHNHDLGENHHLRVSFSKST 87
Score = 40.1 bits (93), Expect = 6e-05
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + + NIP + +++ LF + G + + R ++ + EA +A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQAL 65
Query: 746 KALCQSTHLYGRRLVLEWA 764
L L + ++
Sbjct: 66 IDLHNHDLGENHHLRVSFS 84
Score = 39.7 bits (92), Expect = 9e-05
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 579 PDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRE 638
P TL++ N+ + +E+ ++ F G + +Q + E
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVV---------KGFKFFQKDRKMALIQMGSVE 59
Query: 639 SLNQALKVLQNSSLDE 654
QAL L N L E
Sbjct: 60 EAVQALIDLHNHDLGE 75
Score = 30.5 bits (68), Expect = 0.14
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFKP----LPLASVRTTFLGMAYIGFKDEKNCNKALN--KN 278
T+ + N+P V ++DLK F + MA I + +AL N
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 279 KSFWKGKQLNIYKYSK 294
+ L + +SK
Sbjct: 71 HDLGENHHLRV-SFSK 85
Score = 26.6 bits (58), Expect = 3.9
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDL--GRVLVPPYGITGLVEFLQKNQAKAAFNSLAY 505
+ + N+P DLK LF G + G L++ +A A L
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 506 TKFKE-VPLYLEWA 518
E L + ++
Sbjct: 71 HDLGENHHLRVSFS 84
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 41.5 bits (97), Expect = 2e-05
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
+ V L F +YG + + T + + + A +A
Sbjct: 7 VTVFGFPQASASYIL-LQFAQYGNILKH------VMSNTGNWMHIRYQSKLQARKALS-K 58
Query: 399 DGTVFLGR-MLHLIPGKPKE 417
DG +F M+ + P K
Sbjct: 59 DGRIFGESIMIGVKPCIDKN 78
Score = 40.7 bits (95), Expect = 4e-05
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 580 DTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRES 639
DT + + S I F + G I ++ + +++ ++
Sbjct: 4 DTWVTVFGFPQASASY-ILLQFAQYGNILKHVMSNTG-----------NWMHIRYQSKLQ 51
Query: 640 LNQALKVLQNSSLDEHQI 657
+AL E +
Sbjct: 52 ARKALS-KDGRIFGESIM 68
Score = 33.8 bits (77), Expect = 0.009
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + V P + S + F +G + + + + + +K +A++A+
Sbjct: 5 TWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN-------TGNWMHIRYQSKLQARKAL 56
Query: 746 KALCQSTHLYGRRLV 760
++
Sbjct: 57 S--KDGRIFGESIMI 69
Score = 29.5 bits (66), Expect = 0.25
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 225 HTIVVKNLPAGVKKKDLKAYFK-PLPLASVRTTFLGMAYIGFKDEKNCNKALNKNKSFWK 283
+ V P L + + L V + +I ++ + KAL+K+ +
Sbjct: 5 TWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFG 64
Query: 284 GKQLNIYKYSKDNS 297
+ K D +
Sbjct: 65 ESIMIGVKPCIDKN 78
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 40.5 bits (94), Expect = 5e-05
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
++ ++ ++++ T DD+ + E G + + KG V F E
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIES 59
Query: 391 ATQAYQHLDGTVFLGRMLH 409
A + + G + L
Sbjct: 60 AKKFVE-TPGQKYKETDLL 77
Score = 39.7 bits (92), Expect = 9e-05
Identities = 11/80 (13%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 687 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMK 746
+ ++ P A +++E + G++ +++ + + + +G FV F + AK+ ++
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA--FKGSIFVVFDSIESAKKFVE 65
Query: 747 ALCQSTHLYGRRLVLEWAEE 766
L++ + ++
Sbjct: 66 T--PGQKYKETDLLILFKDD 83
Score = 38.6 bits (89), Expect = 2e-04
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
+ + ++YIK ++T D I+ + G + + + G FV F
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN------IQMRRTLHKAFKGSIFVVF 54
Query: 635 YTRESLNQALKVLQNSSLDEHQIELKRSN 663
+ ES + ++ E + + +
Sbjct: 55 DSIESAKKFVE-TPGQKYKETDLLILFKD 82
Score = 34.7 bits (79), Expect = 0.005
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 222 RQYHTIVVKNLPAGVKKKDLKAYFKP-------LPLASVRTTFLGMAYIGFKDEKNCNKA 274
+ ++ +K P D+K + + ++ F G ++ F ++ K
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 63
Query: 275 LNKNKSFWKGKQLNIYKYSKD 295
+ +K L I + D
Sbjct: 64 VETPGQKYKETDLLI-LFKDD 83
Score = 28.5 bits (63), Expect = 0.83
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 445 RSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPY-----GITGLVEFLQKNQAKAA 499
R + +K P D+K E G + + + + V F AK
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 63
Query: 500 FNSLAYTKFKEVPLYLEWAPE 520
K+KE L + + +
Sbjct: 64 VE-TPGQKYKETDLLILFKDD 83
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 39.5 bits (91), Expect = 7e-05
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQHL 398
I +R L VT ++ L Y DK KG A VT L E A A
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYE-------LKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 399 DGTVFLGRMLH 409
+ R L
Sbjct: 54 HQSRLRERELS 64
Score = 36.8 bits (84), Expect = 7e-04
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 688 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAMKA 747
IL+R +P EV +L + K ++G FV + +A+ A+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY--------ELKYCFVDKYKGTAFVTLLNGEQAEAAINT 52
Query: 748 LCQSTHLYGRRLVLEWA 764
+ L R L ++
Sbjct: 53 -FHQSRLRERELSVQLQ 68
Score = 33.4 bits (75), Expect = 0.010
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 227 IVVKNLPAGVKKKDLKAYFKPLPLASVRT-TFLGMAYIGFKDEKNCNKALNK-NKSFWKG 284
I+++ LP V +++ L + G A++ + + A+N ++S +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 285 KQLNI 289
++L++
Sbjct: 61 RELSV 65
Score = 33.0 bits (74), Expect = 0.016
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 450 ILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNSLAYTKFK 509
IL++ LP ++ L + V Y T V L QA+AA N+ ++ +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-KYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 59
Query: 510 EVPLYLEWAP 519
E L ++ P
Sbjct: 60 ERELSVQLQP 69
Score = 28.7 bits (63), Expect = 0.45
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 12/83 (14%)
Query: 583 LYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFYTRESLNQ 642
+ I+ L + T + G FV E
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKY------------KGTAFVTLLNGEQAEA 48
Query: 643 ALKVLQNSSLDEHQIELKRSNRN 665
A+ S L E ++ ++ +
Sbjct: 49 AINTFHQSRLRERELSVQLQPTD 71
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 38.9 bits (90), Expect = 2e-04
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 339 IFVRNLSY-TVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAYQH 397
+ + + L +L E +G ++ ++ F + A Y
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINE----AFIEMATTEDAQAAVDYYT 66
Query: 398 LDGTVFLGRMLHL 410
+ G+ + +
Sbjct: 67 TTPALVFGKPVRV 79
Score = 37.4 bits (86), Expect = 5e-04
Identities = 9/88 (10%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 682 KQTGSK-ILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 739
+ + + + + + ++ +L + FG + + F+E T
Sbjct: 4 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-------KINEAFIEMATTE 56
Query: 740 EAKRAMKAL-CQSTHLYGRRLVLEWAEE 766
+A+ A+ ++G+ + + +++
Sbjct: 57 DAQAAVDYYTTTPALVFGKPVRVHLSQK 84
Score = 33.1 bits (75), Expect = 0.018
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 448 RIILVKNLPY-RTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFN--SLA 504
R++ + + + L L L EPFG + L+ +E A+AA + +
Sbjct: 9 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTT 68
Query: 505 YTKFKEVPLYLEWA 518
P+ + +
Sbjct: 69 PALVFGKPVRVHLS 82
Score = 29.7 bits (66), Expect = 0.30
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 28 KITQEQLKAKFEEKGTVTDVQLKYTTEGKFRRFAFIGYHREDQAQAALDYF--NNTYVFS 85
K + QL E G +++ + AFI + AQAA+DY+ VF
Sbjct: 20 KNLRYQLLQLVEPFGVISNHLILN-----KINEAFIEMATTEDAQAAVDYYTTTPALVFG 74
Query: 86 SRIKVE 91
++V
Sbjct: 75 KPVRVH 80
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 36.7 bits (84), Expect = 0.001
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 339 IFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMP-EHATQAYQH 397
F +L +DL LF +G + + + ++ F + A +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWID------FVRGAKEGIILFKEKAKEALGKAKD 67
Query: 398 LDGTVFLGRMLHLIPGKPKENE 419
+ R + +
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEV 89
Score = 35.2 bits (80), Expect = 0.006
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 576 EPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQFY 635
E + +L+ + + + F G I + G + F
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWID-----------FVRGAKEGIILFK 55
Query: 636 TR-ESLNQALKVLQNSSLDEHQIELKRSNRNLESEATTVKR 675
+ + K N +L E+ E E +K+
Sbjct: 56 EKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKK 96
Score = 33.2 bits (75), Expect = 0.029
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 448 RIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQ-AKAAFNSLAYT 506
+ +L +T DL LF G++ + G++ F +K + A
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNG 71
Query: 507 KFKEVPLYLEWAPEGVFAEAKEKSKGKEKEKNEEEGEEGEEEKK 550
+ + W + E ++++ K E +E + + + +
Sbjct: 72 NLQLRNKEVTWEV--LEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 36.0 bits (82), Expect = 0.002
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 331 EDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEH 390
D A S + +R L VTE ++ L +G + K K A + E
Sbjct: 3 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGK------VTNILMLKGKNQAFLELATEEA 56
Query: 391 ATQA--YQHLDGTVFLGRMLHLIPGKPKE 417
A Y + +++ KE
Sbjct: 57 AITMVNYYSAVTPHLRNQPIYIQYSNHKE 85
Score = 34.4 bits (78), Expect = 0.007
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 13/92 (14%)
Query: 575 REPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQF 634
+ P L+I+ L TE + + F++
Sbjct: 3 MDGAPSRVLHIRKLPGEVTETEVIALGLPF-----------GKVTNILMLKGKNQAFLEL 51
Query: 635 YTRESLNQALKVLQ--NSSLDEHQIELKRSNR 664
T E+ + L I ++ SN
Sbjct: 52 ATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 83
Score = 32.9 bits (74), Expect = 0.023
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 443 EARSKRIILVKNLPYRTLPTDLKALFEPFGDLGRVLVPPYGITGLVEFLQKNQAKAAFNS 502
+ R++ ++ LP T++ AL PFG + +L+ +E + A N
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 503 LAY--TKFKEVPLYLEWA 518
+ + P+Y++++
Sbjct: 64 YSAVTPHLRNQPIYIQYS 81
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 34.8 bits (79), Expect = 0.004
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 686 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRAM 745
+ + N+P + + + LF F K VRL FVEF T+ ++ A
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN------RHDIAFVEFTTELQSNAAK 62
Query: 746 KALCQSTHLYGRRLVLEWAEE 766
+AL + + +A++
Sbjct: 63 EALQGFKITPTHAMKITFAKK 83
Score = 33.3 bits (75), Expect = 0.013
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 574 EREPEPDTTLYIKNLNFNSTEDSIRRHFKKCGPIASVTVARKKDPKSPGQFLSMGYGFVQ 633
+ E P+ L++ NL + E + F + + FV+
Sbjct: 2 QTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK----------EVRLVPNRHDIAFVE 51
Query: 634 FYTRESLNQALKVLQNSSLDE-HQIELKRSNR 664
F T N A + LQ + H +++ + +
Sbjct: 52 FTTELQSNAAKEALQGFKITPTHAMKITFAKK 83
Score = 30.6 bits (68), Expect = 0.14
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 336 SGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPIDKETDKTKGFALVTFLMPEHATQAY 395
+ +F+ NL E L+ LF ++ F V F + A
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPG---FKEVRLVPNRHDIAF--VEFTTELQSNAAK 62
Query: 396 QHLDGTVFLG 405
+ L G
Sbjct: 63 EALQGFKITP 72
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 28.4 bits (62), Expect = 1.2
Identities = 5/42 (11%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 570 EEDEEREPEPDTTLYIKNLNFNS-TEDSIRRHFKKCGPIASV 610
++ +++ E +++ NL + ++ ++ + + G I +
Sbjct: 8 DQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY 49
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 28.7 bits (64), Expect = 1.5
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 520 EGVFAEAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPEVEENVEEDEER 575
+ V E K + + K + E EE+ +E + ++ +E
Sbjct: 80 KEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKA--RQQQAELAQQEW 133
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 27.1 bits (60), Expect = 2.8
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 465 KALFEPFGDLGRVLV----------PPYGITGLVEFLQKNQAKAAFNSLAYTKFKEV 511
K FE FG L ++EF A +NS Y ++
Sbjct: 26 KPAFERFG--ANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKI 80
>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39,
C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}
Length = 192
Score = 27.2 bits (60), Expect = 5.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 317 AKHWKSQEDSVQFAEDIAESGRIFVRNLSYTVTEDDLTKLFEKYGPLAEVILPI 370
A+++K E Q A ++ + I T ++ DL K +GP ++L I
Sbjct: 43 AEYFKQPEQPKQNAIEVISA--IMAPQEEQTKSKADLYKFLAMFGPYETIMLKI 94
>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase
{Nostoc sp. pcc 7120 [TaxId: 103690]}
Length = 210
Score = 27.5 bits (61), Expect = 5.3
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 358 EKYGP-------LAEVILPIDKETDKTKGFALVT 384
KY P L + + +D + KT+GF V+
Sbjct: 177 YKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS 210
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.3 bits (60), Expect = 7.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 525 EAKEKSKGKEKEKNEEEGEEGEEEKKENTAEEDNQQGVPE 564
E K + + NE E EEEK +N +EE+ +G+P
Sbjct: 79 EQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPS 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.372
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,817,338
Number of extensions: 133999
Number of successful extensions: 867
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 424
Length of query: 787
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 694
Effective length of database: 1,130,706
Effective search space: 784709964
Effective search space used: 784709964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.4 bits)