BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3346
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 56/75 (74%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A T RK KQT SKILVRNIPFQA Q E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 808 ALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG 867
Query: 65 FGFVEFITKNEAKRV 79
FGFV+FITK +AK+
Sbjct: 868 FGFVDFITKQDAKKA 882
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
S+++V+N+P K+ +LF AFG L L K G R FGF+ F ++ EA+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL--KFTKDGKFRKFGFIGFKSEEEAQ 56
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
++ VRN+ + + + ++E+LF A+G L + P + + +GF FV F+
Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-TKKPKGFAFVTFM 449
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S A+++ + IL +N+P +E++E F FG L V LP+ + + VEF+
Sbjct: 575 SQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITA-------IVEFL 627
Query: 72 TKNEAKRV 79
EA++
Sbjct: 628 EPLEARKA 635
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG--LHRGFGFVEFITKNEAK 77
G + ++N+ F + ++ +F G +K + KK +G L GFGFVE+ +A+
Sbjct: 721 GCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 78 RV 79
+
Sbjct: 781 KA 782
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 56/75 (74%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A T+ RK KQT SKILVRNIPFQA E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 816 AVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRG 875
Query: 65 FGFVEFITKNEAKRV 79
FGFV+F+TK +AKR
Sbjct: 876 FGFVDFLTKQDAKRA 890
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
S+++V+N+P K+ +LF AFG L L K G R FGF+ F ++ EA++
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL--KFTKDGKFRKFGFIGFKSEEEAQKA 58
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
++ VRN+P+ + + ++E+LF +G L + P + + +GF F+ F+
Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSL-TKKPKGFAFITFM 451
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG--LHRGFGFVEFITKNEAK 77
G + ++N+ F + +++E+F G +K + KK +G L GFGFVE+ +A+
Sbjct: 729 GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQ 788
Query: 78 RV 79
+
Sbjct: 789 KA 790
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S A+++ + ILV+N+P ++++E F FG L V LP+ + + VEF+
Sbjct: 578 SQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITA-------IVEFL 630
Query: 72 TKNEAKRV 79
EA++
Sbjct: 631 EPLEARKA 638
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
SKI+++N+PF++ E+ +LF A+GE++ VR+PKK +G HRGFGFVEF+T+ EAK
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK--PNGGHRGFGFVEFLTEEEAKNA 851
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
+K++ + +LV+NIPF+ ++ E+ ELF FGEL V L R +E+I NE
Sbjct: 548 SKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPA-------RTIALIEYIHPNE 600
Query: 76 AK 77
AK
Sbjct: 601 AK 602
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
+I VRN+ + K+ ++E++F FG++ + +P S +G F+ ++ A
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDY-DSKKSKGIAFILYLIPENA 415
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ ++I V+ +P +E F+ FG + ++ KK G R FGF+ F T+ AK
Sbjct: 2 SNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK---DGKSRLFGFIGFSTEQSAKN 58
Query: 79 V 79
Sbjct: 59 A 59
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV----GSGLHRGFGFVEFIT 72
K +K+LV+N+PF+A + +V ELF A+G+LK +RLP+K V G+ RGF F+EF T
Sbjct: 636 KTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTT 695
Query: 73 KNEAKRV 79
EA R
Sbjct: 696 HTEAARA 702
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV----GSGLHRGFGFVEFIT 72
K +K+LV+N+PF+A + +V ELF A+G+LK +RLP+K V G+ RGF F+EF T
Sbjct: 636 KTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTT 695
Query: 73 KNEAKRV 79
EA R
Sbjct: 696 HTEAARA 702
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A V+++ S +K G+KIL++N+PF+A + +V+ L A+G+L+ VR+PKK S RG
Sbjct: 707 AAEVRKQDS--SKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--RG 762
Query: 65 FGFVEFITKNEA 76
F F EF+T EA
Sbjct: 763 FAFAEFVTAREA 774
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 3 SEATTVKRKSSNVAKQTGS--------KILVRNIPFQAKQSEVEELFKAFGELKFVRLP- 53
++A+ +++ +NV++Q + ++ +RN+ + + +++ LF FG+L+ V +P
Sbjct: 297 ADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPI 356
Query: 54 -KKMVGSGLHRGFGFVEFITKNEAKRV 79
KK +GF +++F ++A R
Sbjct: 357 DKKTNNP---KGFAYIDFHDADDAVRA 380
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 4 EATTVKR-KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAF-GELKFV---RLPKKMVG 58
EATT ++ + ++ + I V+N+ F KQ E +++FK G L V + K G
Sbjct: 601 EATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPG 660
Query: 59 SGLHRGFGFVEFITKNEA 76
L GFGFVEF K A
Sbjct: 661 KYLSMGFGFVEFKDKASA 678
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLP 53
A ++ + +LV+N P+ E+ LF FGEL + +P
Sbjct: 501 AARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIP 538
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 2 GSEATTVKRKSSNVAKQTG--SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS 59
G +A +RK K +KI+++N+PFQA + +V LF A+G+L+ VR+PKK S
Sbjct: 676 GMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS 735
Query: 60 GLHRGFGFVEFITKNEAK 77
RGFGF +F++ EA+
Sbjct: 736 A--RGFGFADFVSAREAE 751
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 3 SEATTVKRKSSNVAK-QTGSKILVRNIPFQAKQSEVEELFKAFGELK--FVRLPKKMVGS 59
++A T +N+ + +++ VRN+ ++ K+SE+E +F FG+++ V + S
Sbjct: 276 TKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTS 335
Query: 60 GLHRGFGFVEFITKNEA 76
+GF +V++ + A
Sbjct: 336 ---KGFAYVQYADPDAA 349
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 9 KRKSSNVAKQTG---SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+R+ + AK+ +KI+++N+PFQA + +V LF A+G+L+ VR+PKK S RGF
Sbjct: 687 ERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSA--RGF 744
Query: 66 GFVEFITKNEAK 77
GF +F++ EA+
Sbjct: 745 GFADFVSAREAE 756
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
S++ VRN+P+ A +S++E +F FG+++ + + S +GF +V++I + A
Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFD-TRSTTSKGFAYVQYIEPDAA 355
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRL-----PKKMVGSGLHRGFGFVEFITK 73
S + V+N+ F E+FK R+ PK+ G L GFGFV+F TK
Sbjct: 597 STLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKR-PGKTLSMGFGFVDFRTK 653
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 11 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
+++ K SKIL++N+PF+A + +V++LF AFG LK VR+PKK + RGF F E+
Sbjct: 693 ETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKF--NSESRGFAFAEY 750
Query: 71 ITKNEAKRV 79
++ EA+
Sbjct: 751 VSAKEAEHA 759
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
++TG ++ +RN+ + AK+ + +LF +GEL+ V LP +G +GF V+F
Sbjct: 298 RKTG-RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPIN-TKTGQCKGFAHVQF 349
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP 53
ILV+N PF Q E+ E+F +G+L V +P
Sbjct: 487 ILVKNFPFGTTQPEIAEMFSEYGDLYKVMMP 517
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 6/76 (7%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
S++ K KS+ K++G KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S
Sbjct: 748 ASQSGNTKTKSN---KKSG-KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSA- 802
Query: 62 HRGFGFVEFITKNEAK 77
RGF FVEF+ EA+
Sbjct: 803 -RGFAFVEFLLPKEAE 817
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
QTG ++ +RNI + +K+ + +LF FGEL+ V + +G +GF +V F
Sbjct: 343 QTG-RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALD-TRTGQSKGFAYVLF 393
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 23 ILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
I ++N+ F + + FK F ++K PK G L GFGFVEF TK +A
Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQ-GKTLSMGFGFVEFRTKEQAN 723
Query: 78 RV 79
V
Sbjct: 724 AV 725
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP 53
ILV+N PF + E+ E+F +G+L+ + +P
Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKLERLLMP 564
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
K KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S RGF FVEF+ EA
Sbjct: 734 KAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSA--RGFAFVEFVLPKEA 791
Query: 77 K 77
+
Sbjct: 792 E 792
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
Q ++ +RNI + + + + ++LF +GELK V + +G +GF +V F EA
Sbjct: 322 QKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVD-TRTGNSKGFAYVLFAKPEEA 379
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP 53
ILV+N PF + E+ ELF FG+L+ + +P
Sbjct: 514 ILVKNFPFGTTREELGELFVPFGKLERLLMP 544
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 23 ILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
I ++N+ F+ ++ + FK F ++K PK+ L GFGFVEF TK +A
Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQK-NKVLSMGFGFVEFRTKEQAT 700
Query: 78 RV 79
V
Sbjct: 701 AV 702
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S RGF FVEF+ EA+
Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA--RGFAFVEFLLPKEAE 806
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP 53
ILV+N P+ + E+ ELF FG+L+ + LP
Sbjct: 518 ILVKNFPYGTTREEIAELFLPFGKLQRLLLP 548
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 23 ILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
I ++N+ F ++ E FK F ++K PK+ G L GFGF EF TK +A
Sbjct: 653 IFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQ-PGKTLSMGFGFAEFKTKEQAN 711
Query: 78 RV 79
V
Sbjct: 712 AV 713
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
++TG ++ +RNI + A + + +LF +GEL+ V + +G +GF +V F + A
Sbjct: 327 RETG-RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVD-TRTGQSKGFAYVLFKNADNA 384
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
KIL++N+PF+A + ++ +LF + G+LK VRLPKK RGFGFVE+ T EA+
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKF--DNTTRGFGFVEYSTVREAQ 773
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLP--KKMVGSGLHRGFGFVEF 70
++ +RN+PF A E+ F++FG +K V +P K+ S +G FV F
Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKAS---KGLAFVSF 362
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
++ + ILV+NIP+ EVE+LF GE+ V +P SG VE NEA+
Sbjct: 498 RSDTTILVKNIPYGTSAEEVEKLFGEHGEVDKVLIPP----SGT---IAVVEMPVVNEAR 550
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK----MVGSGLHRGFGFVEFITKNE 75
G+ + V+N+ F + F + F R+ K G+ L G+GFV F + +
Sbjct: 620 GATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDA 679
Query: 76 AK 77
A+
Sbjct: 680 AR 681
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 9 KRKSSNVAKQT---GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+R+ ++AK+ G+K++V+N+PF+ + EV LF A+G+L +R+PKK S RGF
Sbjct: 689 ERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSS--RGF 746
Query: 66 GFVEFITKNEA 76
F EF T EA
Sbjct: 747 AFAEFSTAKEA 757
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
S + VRN+ F + + FK ++K PKK G L GFGFV F TK++
Sbjct: 599 SSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKP-GQVLSMGFGFVAFRTKDQ 657
Query: 76 AK 77
A+
Sbjct: 658 AQ 659
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
S++ +RN+ + + +V E F FG L V +P + G +GF + +
Sbjct: 308 SRLFLRNLSYTVTEDDVREHFAKFGILVEVHVP--LDSKGHSKGFAMIRY 355
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 25 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
V+N+PF+A + +V ELF +FG+LK VR+PKK S RGF FVEF+ +EA+
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA--RGFAFVEFLLPSEAE 766
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 1 MGSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKK 55
M +++ T +++ + T S I V+N+ F +++ E FK F ++K PK
Sbjct: 593 MDADSKTPSSEATAIDGPTVS-IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKN 651
Query: 56 MVGSGLHRGFGFVEFITKNEA 76
L GFGF+EF TK +A
Sbjct: 652 -SDKKLSMGFGFIEFRTKEQA 671
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
++ +RNI + A + + ++LF +GEL+ V + +G +GF +V F
Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVD-TRTGQSKGFAYVLF 349
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 27 NIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
N+PF+A + ++ ELF AFG+LK VR+PKK S RGF FVEF EA+
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSA--RGFAFVEFNLMKEAE 771
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
++TG ++ +RNI ++A + + LF +G L+ V + +G +GF +V+F+ K +A
Sbjct: 307 EETG-RLFIRNISYEASEEDFRSLFSQYGALEEVHIAID-TRTGKSKGFLYVQFLKKEDA 364
Query: 77 KRV 79
R
Sbjct: 365 TRA 367
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP 53
ILV+N PF E+ ELF A+G+LK + +P
Sbjct: 495 ILVKNFPFGTTIDEIGELFSAYGQLKRMLMP 525
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 23 ILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
+ V+N+ F + +LFK +K PK G L GFGFVEF TK +A
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNS-GKTLSMGFGFVEFRTKEQA 676
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 8 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
++R + A G ++ V NI F+ + +VE F+ +G+++ VR+PK+ H+GFG+
Sbjct: 744 LRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRF---NQHKGFGY 800
Query: 68 VEFITKNEAK 77
V T +A+
Sbjct: 801 VVMTTNQDAE 810
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 9 KRKSSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
K +SN + TGSK L V N+P+ +Q +V++ F+ GE+ +R G RGFG
Sbjct: 436 KTPASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRF--STFEDGNFRGFGH 493
Query: 68 VEFITKNEAKRV 79
VEF T AK+
Sbjct: 494 VEFATAEAAKKA 505
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 90 ASSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDIKTGH 143
Query: 62 HRGFGFVEF 70
+GFGFV F
Sbjct: 144 SKGFGFVRF 152
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 90 ASSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGH 143
Query: 62 HRGFGFVEF 70
+GFGFV F
Sbjct: 144 SKGFGFVRF 152
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 90 ASSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGH 143
Query: 62 HRGFGFVEF 70
+GFGFV F
Sbjct: 144 SKGFGFVRF 152
>sp|Q9D8T7|SLIRP_MOUSE SRA stem-loop-interacting RNA-binding protein, mitochondrial
OS=Mus musculus GN=Slirp PE=1 SV=2
Length = 112
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 13 SNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S + TG I VR IP+ A SE+ E F FG ++ +P +G HRG G+V+F
Sbjct: 10 SALRSSTGRPIAFVRKIPWTAAASELREHFAQFGHVRRCTVPFDK-ETGFHRGMGWVQFS 68
Query: 72 TKNE 75
++ E
Sbjct: 69 SQEE 72
>sp|Q8BIF2|RFOX3_MOUSE RNA binding protein fox-1 homolog 3 OS=Mus musculus GN=Rbfox3 PE=1
SV=2
Length = 374
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 146
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 147 TSSDADR 153
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 3 SEATTVKRKSSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
S+ K +SN ++ T S L + N+ F Q +V+E F+ GE+ VRL GS
Sbjct: 292 SQNDEPKTPASNQSQGTESATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSS- 350
Query: 62 HRGFGFVEFITKNEAKRV 79
RGFG V+F + EAK+
Sbjct: 351 -RGFGHVQFASSEEAKKA 367
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
S A VKR A Q S ++V +P++ + ++++ F FGE+ V++ KK + +G
Sbjct: 90 ASSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQV-KKDLKTGH 143
Query: 62 HRGFGFVEF 70
+GFGFV F
Sbjct: 144 SKGFGFVRF 152
>sp|A6NFN3|RFOX3_HUMAN RNA binding protein fox-1 homolog 3 OS=Homo sapiens GN=RBFOX3 PE=2
SV=4
Length = 312
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 146
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 147 TSSDADR 153
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
AK + I V+NI + E E+LF +GE+ L K G +GFGFV F+ N
Sbjct: 226 AKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD--AEGKPKGFGFVNFVDHNA 283
Query: 76 AKRV 79
A +
Sbjct: 284 AAKA 287
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 74
+ K+ I ++N+ + E F FGE+ ++ + +G RGFGFV F ++
Sbjct: 132 IRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKV--ALDENGNSRGFGFVHFKEES 189
Query: 75 EAK 77
+AK
Sbjct: 190 DAK 192
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 74
+AK G + ++N+ +++E F +G + R+ + G+ +GFGFV F +
Sbjct: 328 LAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS--KGFGFVCFSSPE 385
Query: 75 EAKRV 79
EA +
Sbjct: 386 EATKA 390
>sp|Q66JB7|RFOX2_XENTR RNA binding protein fox-1 homolog 2 OS=Xenopus tropicalis GN=rbfox2
PE=2 SV=1
Length = 380
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 92 GQQSQTQNSENSE-SKPTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 148
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F T +A R
Sbjct: 149 -KGFGFVTFETSADADR 164
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 72
SN + + + ++V +P Q E++ LF + GE++ +L + + G G+GFV +I
Sbjct: 58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYID 117
Query: 73 KNEAKR 78
+A++
Sbjct: 118 PKDAEK 123
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
+ + V +P Q E+E+LF +G + R+ V +G+ RG GF+ F + EA+
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-TGVSRGVGFIRFDKRIEAE 208
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
+ +LVRN+ +Q ++ + F+ FG +K + LP+ +G RGFGFV+F+ +A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYY-TGDPRGFGFVQFMDPADA 90
>sp|Q8WP23|BOLL_MACFA Protein boule-like OS=Macaca fascicularis GN=BOLL PE=2 SV=2
Length = 283
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
++I V I F+ +S++ + F +G +K V++ +G+ +G+GFV F T+ +A+++
Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR--AGVSKGYGFVTFETQEDAQKI 89
>sp|Q8N9W6|BOLL_HUMAN Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2
Length = 283
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
++I V I F+ +S++ + F +G +K V++ +G+ +G+GFV F T+ +A+++
Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR--AGVSKGYGFVTFETQEDAQKI 89
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 103 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 159
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 160 -KGFGFVTFENSADADR 175
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3
Length = 759
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
++++RN+ F+ + +++ +F FG + V +P+K G RGFGFV+F
Sbjct: 115 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRK--PDGKMRGFGFVQF 161
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 13/66 (19%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH------RGFGFVEFITK 73
G + +RN+ F +++ E+ EL + FGELK+VR+ LH +G F +F+T+
Sbjct: 334 GKTVFIRNLSFDSEEEELGELLQQFGELKYVRIV-------LHPDTEHSKGCAFAQFMTQ 386
Query: 74 NEAKRV 79
A++
Sbjct: 387 EAAQKC 392
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELK--FVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
G + V +P A+ ++EELF G +K FV K GS RGFG+V F + +
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEK---GSKACRGFGYVTFSMLEDVQ 59
Query: 78 RV 79
R
Sbjct: 60 RA 61
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 18 QTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
Q GSK L N+ +Q +S++E FK GE+ VRL G +G+G +EF + EA
Sbjct: 380 QGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRL--SSFDDGSFKGYGHIEFASPEEA 437
Query: 77 KRV 79
++
Sbjct: 438 QKA 440
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 111 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 167
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 168 -KGFGFVTFENSADADR 183
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ ++V +P Q E+ LF + GE++ +L + V +G G+GFV ++T +A+R
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-AGHSLGYGFVNYVTAKDAER 76
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 7 TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 66
+ R SS V K + + + +P Q +VE++F FG + R+ +GL RG
Sbjct: 94 SYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQT-TGLSRGVA 150
Query: 67 FVEFITKNEAK 77
F+ F ++EA+
Sbjct: 151 FIRFDKRSEAE 161
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 162 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 218
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 219 -KGFGFVTFENSADADR 234
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+KI VRN+ + E+ ELF FG +K VRL K+ + +G +VEF EA+R
Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKL--NKQFKGIAYVEFEKPGEAQR 779
>sp|Q5R8K3|SLIRP_PONAB SRA stem-loop-interacting RNA-binding protein, mitochondrial
OS=Pongo abelii GN=SLIRP PE=3 SV=1
Length = 109
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 24 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
VR IP+ A S+++E F FG ++ LP +G HRG G+V+F
Sbjct: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDK-ETGFHRGLGWVQF 67
>sp|Q9GZT3|SLIRP_HUMAN SRA stem-loop-interacting RNA-binding protein, mitochondrial
OS=Homo sapiens GN=SLIRP PE=1 SV=1
Length = 109
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 24 LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
VR IP+ A S+++E F FG ++ LP +G HRG G+V+F
Sbjct: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDK-ETGFHRGLGWVQF 67
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 145 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 201
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 202 -KGFGFVTFENSADADR 217
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
++ A + + ++V +P Q E + LF + GE++ +L + + +G G+GFV ++
Sbjct: 26 TNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYV 84
Query: 72 TKNEAKR 78
N+A +
Sbjct: 85 DPNDADK 91
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
+ + V ++P Q E+E+LF +G + R+ V + RG GF+ F + EA+
Sbjct: 121 ANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAE 177
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 9 KRKSSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
K K++ K+ S+ L V+NIP+ + VEEL + F K +R+P GS ++G +
Sbjct: 312 KNKTAENKKERDSRTLFVKNIPY---STTVEELQEIFENAKDIRIPTGKDGS--NKGIAY 366
Query: 68 VEFITKNEAKRV 79
VEF ++EA +
Sbjct: 367 VEFSNEDEANKA 378
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 11 KSSNVAKQTG----SKILV-RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
KS N + G SK+LV N+ + A + + E+F+ + +R+P+ G +GF
Sbjct: 400 KSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ---GRAKGF 453
Query: 66 GFVEFITKNEAK 77
F+EF + +AK
Sbjct: 454 AFIEFSSAEDAK 465
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
A + + ++V +P Q E + LF + GE++ +L + + +G G+GFV ++ N+
Sbjct: 29 ADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYVDPND 87
Query: 76 AKR 78
A +
Sbjct: 88 ADK 90
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
+ + V ++P Q E+E+LF +G + R+ V +G+ RG GF+ F + EA+
Sbjct: 120 ANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQV-TGVSRGVGFIRFDKRIEAE 175
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ ++V +P Q E+ LF + GE++ +L + V +G G+GFV ++T +A+R
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKV-AGHSLGYGFVNYVTAKDAER 76
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 7 TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 66
+ R SS V K + + + +P Q +VE++F FG + R+ +GL RG
Sbjct: 94 SYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQT-TGLSRGVA 150
Query: 67 FVEFITKNEAK 77
F+ F ++EA+
Sbjct: 151 FIRFDKRSEAE 161
>sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1 OS=Xenopus laevis GN=dnd1 PE=2 SV=2
Length = 371
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
A +GS++ + IP + ++ LF++ G+L RL M SGL+RGF + +I++ +
Sbjct: 72 APVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRL--MMTFSGLNRGFAYARYISRRQ 129
Query: 76 A 76
A
Sbjct: 130 A 130
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 3 SEATTVKRKSSNVAKQ----TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 58
+E+T + +K A + G+ + V I + ++ E++++F FG + VR+ ++ V
Sbjct: 79 NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV- 137
Query: 59 SGLHRGFGFVEFITKNEA 76
+ RGFGF+ F T EA
Sbjct: 138 TKASRGFGFLSFSTVEEA 155
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 9 KRKSSNVAKQ----TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
+++S + AK + KI + N+P + +V EL K FG+L +L K + G +G
Sbjct: 294 QKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKN-IADGSSKG 352
Query: 65 FGFVEFITKNEAK 77
F F EF ++A+
Sbjct: 353 FCFCEFKNPSDAE 365
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 7 TVKRKSSNV---------AKQT---------GSKIL-VRNIPFQAKQSEVEELFKAFGEL 47
T K+KSS+V AKQ GSK L N+ F ++++VE FK GE+
Sbjct: 264 TPKKKSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEV 323
Query: 48 KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
VR G RGFG VEF + EA++
Sbjct: 324 VDVRFSTNR-DDGSFRGFGHVEFASSEEAQKA 354
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,595,657
Number of Sequences: 539616
Number of extensions: 790448
Number of successful extensions: 3478
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 3037
Number of HSP's gapped (non-prelim): 720
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)