Query psy3346
Match_columns 79
No_of_seqs 166 out of 1624
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 22:39:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1E-22 3.5E-27 106.5 8.0 62 17-79 16-77 (99)
2 3s7r_A Heterogeneous nuclear r 99.8 7.8E-21 2.7E-25 96.8 7.7 64 15-79 6-69 (87)
3 3s8s_A Histone-lysine N-methyl 99.8 7.9E-21 2.7E-25 101.0 7.8 61 18-79 4-64 (110)
4 2lxi_A RNA-binding protein 10; 99.8 2.1E-21 7.2E-26 100.1 4.9 58 21-79 2-60 (91)
5 1s79_A Lupus LA protein; RRM, 99.8 1.1E-20 3.6E-25 99.5 7.1 61 17-79 8-68 (103)
6 1x4h_A RNA-binding protein 28; 99.8 2.2E-20 7.6E-25 98.8 8.1 67 12-79 7-73 (111)
7 2lkz_A RNA-binding protein 5; 99.8 5.4E-21 1.8E-25 99.4 5.5 62 17-79 6-69 (95)
8 2cqg_A TDP-43, TAR DNA-binding 99.8 3.7E-20 1.3E-24 96.9 8.3 64 15-79 10-73 (103)
9 2cpz_A CUG triplet repeat RNA- 99.8 3.2E-20 1.1E-24 98.9 8.0 64 15-79 20-83 (115)
10 2cqd_A RNA-binding region cont 99.8 4.6E-20 1.6E-24 98.4 8.4 66 13-79 10-75 (116)
11 2dh8_A DAZ-associated protein 99.8 2.7E-20 9.2E-25 97.7 7.2 65 14-79 10-74 (105)
12 2dgp_A Bruno-like 4, RNA bindi 99.8 3.2E-20 1.1E-24 97.5 7.5 64 15-79 8-71 (106)
13 2dgs_A DAZ-associated protein 99.8 5.6E-20 1.9E-24 95.7 7.9 64 15-79 5-68 (99)
14 1x5u_A Splicing factor 3B subu 99.8 5.7E-20 2E-24 96.4 8.0 64 15-79 10-73 (105)
15 1p27_B RNA-binding protein 8A; 99.8 6E-20 2E-24 96.5 7.9 65 14-79 17-81 (106)
16 2dnm_A SRP46 splicing factor; 99.8 4.2E-20 1.4E-24 96.7 7.2 65 14-79 7-71 (103)
17 2cph_A RNA binding motif prote 99.8 7.9E-20 2.7E-24 96.1 8.2 65 14-79 9-74 (107)
18 2e5h_A Zinc finger CCHC-type a 99.8 5E-20 1.7E-24 94.9 7.2 64 15-79 11-74 (94)
19 2do4_A Squamous cell carcinoma 99.8 8.1E-20 2.8E-24 95.2 8.1 65 13-79 10-74 (100)
20 2dgo_A Cytotoxic granule-assoc 99.8 9.2E-20 3.2E-24 97.0 8.3 65 14-79 9-73 (115)
21 1wg5_A Heterogeneous nuclear r 99.8 6.9E-20 2.4E-24 96.3 7.7 63 15-79 10-73 (104)
22 2cqc_A Arginine/serine-rich sp 99.8 6.2E-20 2.1E-24 94.7 7.4 64 15-79 10-73 (95)
23 1x4b_A Heterogeneous nuclear r 99.8 1.7E-20 5.8E-25 100.1 5.4 62 17-79 24-85 (116)
24 1x4e_A RNA binding motif, sing 99.8 4.7E-20 1.6E-24 93.5 6.6 61 18-79 3-63 (85)
25 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4E-24 95.3 8.2 61 17-79 12-72 (105)
26 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.8E-20 2.7E-24 92.6 7.3 62 17-79 4-65 (85)
27 2ywk_A Putative RNA-binding pr 99.8 6.2E-20 2.1E-24 94.7 7.0 63 15-79 11-73 (95)
28 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.2E-20 2.8E-24 92.9 7.3 61 18-79 4-64 (87)
29 2khc_A Testis-specific RNP-typ 99.8 7.3E-20 2.5E-24 97.8 7.5 63 16-79 36-98 (118)
30 1oo0_B CG8781-PA, drosophila Y 99.8 9.4E-20 3.2E-24 96.4 7.8 65 14-79 20-84 (110)
31 2div_A TRNA selenocysteine ass 99.8 9E-20 3.1E-24 94.8 7.6 62 17-79 6-68 (99)
32 2rs2_A Musashi-1, RNA-binding 99.8 4.8E-20 1.6E-24 97.7 6.5 64 15-79 20-83 (109)
33 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.6E-24 94.5 7.7 62 17-79 5-66 (99)
34 2cq0_A Eukaryotic translation 99.8 5.5E-20 1.9E-24 96.3 6.6 64 15-79 10-73 (103)
35 2la6_A RNA-binding protein FUS 99.8 1.4E-19 4.9E-24 94.2 7.9 65 14-79 7-79 (99)
36 3ns6_A Eukaryotic translation 99.8 2.2E-20 7.5E-25 97.7 4.3 61 18-79 4-70 (100)
37 1wi8_A EIF-4B, eukaryotic tran 99.8 1.3E-19 4.3E-24 95.1 7.3 63 15-79 10-73 (104)
38 2jrs_A RNA-binding protein 39; 99.8 1.4E-19 4.6E-24 95.8 7.4 65 14-79 20-84 (108)
39 2dnz_A Probable RNA-binding pr 99.8 2.1E-19 7.2E-24 92.7 7.8 61 18-79 3-63 (95)
40 1x5s_A Cold-inducible RNA-bind 99.8 2E-19 6.7E-24 93.9 7.7 63 16-79 8-70 (102)
41 2x1f_A MRNA 3'-END-processing 99.8 2.1E-19 7.2E-24 93.0 7.7 59 20-79 2-60 (96)
42 2cq4_A RNA binding motif prote 99.8 6.2E-20 2.1E-24 97.6 5.8 60 19-79 24-83 (114)
43 3md1_A Nuclear and cytoplasmic 99.8 1.6E-19 5.6E-24 91.1 7.0 58 21-79 2-59 (83)
44 4f25_A Polyadenylate-binding p 99.8 1.4E-19 4.7E-24 96.7 7.1 58 19-79 4-61 (115)
45 2kxn_B Transformer-2 protein h 99.8 1.3E-19 4.3E-24 98.6 7.0 64 15-79 41-104 (129)
46 2dng_A Eukaryotic translation 99.8 2.3E-19 7.8E-24 93.9 7.7 62 16-79 11-72 (103)
47 3p5t_L Cleavage and polyadenyl 99.8 4E-20 1.4E-24 94.9 4.7 58 21-79 2-61 (90)
48 3ucg_A Polyadenylate-binding p 99.8 2.4E-19 8.2E-24 91.5 7.5 60 19-79 5-64 (89)
49 3n9u_C Cleavage and polyadenyl 99.8 1.9E-19 6.3E-24 100.8 7.5 60 19-79 54-115 (156)
50 2mss_A Protein (musashi1); RNA 99.8 1E-19 3.6E-24 90.4 5.7 57 22-79 1-57 (75)
51 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.7E-20 1.3E-24 92.3 4.1 58 21-79 1-58 (77)
52 2dhg_A TRNA selenocysteine ass 99.8 4E-19 1.4E-23 93.1 8.1 62 16-79 5-67 (104)
53 3ex7_B RNA-binding protein 8A; 99.8 2.7E-19 9.1E-24 96.6 7.6 65 14-79 16-80 (126)
54 1x5o_A RNA binding motif, sing 99.8 3.7E-19 1.3E-23 94.6 7.9 63 15-79 20-82 (114)
55 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.8E-19 1.6E-23 96.8 8.6 64 15-79 58-121 (140)
56 1iqt_A AUF1, heterogeneous nuc 99.8 6.9E-20 2.4E-24 90.9 4.7 57 22-79 1-57 (75)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.7E-24 94.5 6.0 62 17-79 9-70 (102)
58 1sjq_A Polypyrimidine tract-bi 99.8 2.8E-19 9.6E-24 94.4 7.2 56 17-79 13-68 (105)
59 1x5t_A Splicing factor 3B subu 99.8 1.5E-19 5.2E-24 93.4 6.0 61 18-79 3-64 (96)
60 1u6f_A Tcubp1, RNA-binding pro 99.8 4.4E-19 1.5E-23 97.1 8.0 62 17-79 39-100 (139)
61 2cpy_A RNA-binding protein 12; 99.8 1.6E-19 5.5E-24 96.2 5.9 62 16-79 11-73 (114)
62 2cpf_A RNA binding motif prote 99.8 3E-19 1E-23 92.6 6.8 61 18-79 3-66 (98)
63 2m2b_A RNA-binding protein 10; 99.8 1.2E-19 4.2E-24 98.7 5.4 63 15-79 18-82 (131)
64 1x4a_A Splicing factor, argini 99.8 7.9E-19 2.7E-23 92.7 8.4 64 12-79 14-77 (109)
65 4f02_A Polyadenylate-binding p 99.8 3.6E-19 1.2E-23 103.3 7.7 61 18-79 13-73 (213)
66 3ulh_A THO complex subunit 4; 99.8 5.6E-19 1.9E-23 92.9 7.7 63 15-79 24-86 (107)
67 2db1_A Heterogeneous nuclear r 99.8 2.6E-19 8.8E-24 96.1 6.4 63 15-79 12-77 (118)
68 2cpe_A RNA-binding protein EWS 99.8 3.9E-19 1.3E-23 94.3 6.9 64 15-79 10-81 (113)
69 2ad9_A Polypyrimidine tract-bi 99.8 4E-19 1.4E-23 95.6 7.0 58 15-79 26-83 (119)
70 2fy1_A RNA-binding motif prote 99.8 4.7E-19 1.6E-23 94.8 7.3 61 17-79 4-64 (116)
71 2cq3_A RNA-binding protein 9; 99.8 1.1E-18 3.9E-23 91.2 8.5 63 14-79 9-71 (103)
72 1wel_A RNA-binding protein 12; 99.8 9.4E-20 3.2E-24 98.3 4.5 63 16-79 21-83 (124)
73 1p1t_A Cleavage stimulation fa 99.8 9.9E-20 3.4E-24 95.3 4.4 62 17-79 5-66 (104)
74 2xs2_A Deleted in azoospermia- 99.8 1.6E-19 5.4E-24 94.4 5.1 61 17-79 6-66 (102)
75 2hgm_A HNRPF protein, heteroge 99.8 4.8E-19 1.6E-23 96.2 7.2 62 15-79 37-100 (126)
76 2do0_A HnRNP M, heterogeneous 99.8 8.7E-19 3E-23 93.1 8.0 62 16-79 11-72 (114)
77 2hgl_A HNRPF protein, heteroge 99.8 2.7E-19 9.2E-24 98.2 6.2 63 15-79 39-104 (136)
78 1h2v_Z 20 kDa nuclear CAP bind 99.8 9E-19 3.1E-23 97.5 8.3 62 17-79 36-97 (156)
79 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-19 9.2E-24 93.9 5.7 61 16-79 11-71 (102)
80 2krb_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 89.2 6.4 57 20-79 1-63 (81)
81 2dnn_A RNA-binding protein 12; 99.8 1.4E-19 4.9E-24 96.1 4.6 60 17-79 13-72 (109)
82 2dnl_A Cytoplasmic polyadenyla 99.8 3E-19 1E-23 95.1 5.9 61 17-79 5-68 (114)
83 2dha_A FLJ20171 protein; RRM d 99.8 1.1E-19 3.9E-24 98.3 4.1 61 17-79 20-84 (123)
84 2nlw_A Eukaryotic translation 99.8 5.6E-19 1.9E-23 92.9 6.7 62 15-79 10-77 (105)
85 2d9p_A Polyadenylate-binding p 99.8 7.6E-19 2.6E-23 91.9 7.1 62 15-79 10-71 (103)
86 1l3k_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 100.5 7.2 64 15-79 8-71 (196)
87 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.7E-18 5.8E-23 90.6 8.4 62 15-79 10-71 (103)
88 4a8x_A RNA-binding protein wit 99.8 5E-19 1.7E-23 90.0 6.2 60 19-79 3-63 (88)
89 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-18 4.8E-23 89.1 7.9 60 17-79 5-64 (92)
90 2dis_A Unnamed protein product 99.8 9E-19 3.1E-23 92.4 7.4 61 18-79 6-68 (109)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.9E-19 3.4E-23 98.3 7.9 64 15-79 67-130 (165)
92 3d2w_A TAR DNA-binding protein 99.8 1.1E-18 3.9E-23 89.5 7.4 58 15-78 6-63 (89)
93 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-18 4.2E-23 97.0 8.0 62 17-79 67-128 (158)
94 2lmi_A GRSF-1, G-rich sequence 99.8 3.2E-19 1.1E-23 94.2 5.1 63 15-79 6-71 (107)
95 2cqp_A RNA-binding protein 12; 99.8 2.8E-19 9.4E-24 92.8 4.6 62 17-79 12-73 (98)
96 2jwn_A Embryonic polyadenylate 99.8 9E-19 3.1E-23 94.2 6.7 60 19-79 35-94 (124)
97 2kt5_A RNA and export factor-b 99.8 1.8E-18 6.1E-23 93.2 7.6 62 16-79 31-92 (124)
98 2lea_A Serine/arginine-rich sp 99.8 4.1E-19 1.4E-23 97.2 5.0 65 14-79 41-105 (135)
99 2dgw_A Probable RNA-binding pr 99.8 2E-18 6.9E-23 88.5 7.3 61 16-79 6-66 (91)
100 2cq1_A PTB-like protein L; RRM 99.8 1.8E-18 6.1E-23 90.8 7.1 56 17-79 12-67 (101)
101 2ek1_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 92.0 4.2 61 18-79 13-73 (95)
102 1wex_A Hypothetical protein (r 99.8 2.9E-18 1E-22 90.3 7.7 56 17-79 12-67 (104)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.2E-19 1.4E-23 92.7 4.4 64 15-79 14-77 (100)
104 3q2s_C Cleavage and polyadenyl 99.8 1.3E-18 4.5E-23 102.3 7.1 60 19-79 67-128 (229)
105 1x4d_A Matrin 3; structural ge 99.8 1E-18 3.5E-23 91.9 5.7 56 17-79 12-68 (102)
106 3r27_A HnRNP L, heterogeneous 99.8 3.8E-18 1.3E-22 89.3 7.6 56 17-79 18-73 (100)
107 2cjk_A Nuclear polyadenylated 99.8 1.3E-18 4.3E-23 97.0 6.0 60 19-79 2-61 (167)
108 2err_A Ataxin-2-binding protei 99.8 2E-18 6.7E-23 91.4 6.4 63 14-79 23-85 (109)
109 2hgn_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 97.7 4.0 61 16-79 42-102 (139)
110 2ki2_A SS-DNA binding protein 99.8 5E-19 1.7E-23 90.5 3.7 57 21-79 2-58 (90)
111 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-18 1.4E-22 88.2 7.1 59 17-79 6-68 (96)
112 1x4f_A Matrin 3; structural ge 99.7 2E-18 6.7E-23 92.1 5.5 56 17-79 22-78 (112)
113 3nmr_A Cugbp ELAV-like family 99.7 4.9E-18 1.7E-22 95.0 7.1 60 19-79 2-63 (175)
114 2e5j_A Methenyltetrahydrofolat 99.7 6.6E-18 2.3E-22 87.6 6.6 63 11-79 10-72 (97)
115 1fxl_A Paraneoplastic encephal 99.7 1.1E-17 3.8E-22 92.9 7.8 59 20-79 2-60 (167)
116 2cpi_A CCR4-NOT transcription 99.7 3.9E-18 1.3E-22 90.4 5.5 64 15-79 10-79 (111)
117 1wf0_A TDP-43, TAR DNA-binding 99.7 5.2E-18 1.8E-22 86.5 5.7 56 18-79 3-58 (88)
118 1b7f_A Protein (SXL-lethal pro 99.7 8.6E-18 3E-22 93.6 7.0 60 19-79 2-61 (168)
119 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-17 4.6E-22 88.6 7.4 59 17-79 5-63 (115)
120 2ytc_A PRE-mRNA-splicing facto 99.7 1.9E-17 6.4E-22 83.8 7.6 58 15-79 7-64 (85)
121 2a3j_A U1 small nuclear ribonu 99.7 2E-17 6.7E-22 89.9 7.6 59 17-79 26-88 (127)
122 2fc9_A NCL protein; structure 99.7 1E-17 3.5E-22 87.3 6.2 59 16-79 11-69 (101)
123 1x4c_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 86.5 7.9 56 16-79 11-66 (108)
124 2cpx_A Hypothetical protein FL 99.7 2.7E-18 9.1E-23 91.3 3.6 62 17-79 22-83 (115)
125 1fj7_A Nucleolin RBD1, protein 99.7 9.7E-19 3.3E-23 91.2 1.8 61 17-79 14-74 (101)
126 2f3j_A RNA and export factor b 99.7 1.9E-17 6.5E-22 94.2 7.3 60 18-79 86-145 (177)
127 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.4E-22 88.8 6.2 59 16-79 24-83 (111)
128 1why_A Hypothetical protein ri 99.7 2.9E-17 9.8E-22 85.1 7.4 58 15-79 12-69 (97)
129 2voo_A Lupus LA protein; RNA-b 99.7 2E-17 6.8E-22 95.2 7.2 58 20-79 109-166 (193)
130 1nu4_A U1A RNA binding domain; 99.7 1E-17 3.4E-22 86.6 5.2 60 16-79 4-67 (97)
131 1l3k_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 93.2 7.6 61 18-79 102-162 (196)
132 2lcw_A RNA-binding protein FUS 99.6 5.4E-19 1.8E-23 94.3 0.0 62 17-79 4-73 (116)
133 2qfj_A FBP-interacting repress 99.7 4.5E-18 1.5E-22 98.0 3.8 61 18-79 26-86 (216)
134 2cpj_A Non-POU domain-containi 99.7 2.5E-17 8.7E-22 85.6 6.3 58 15-79 10-67 (99)
135 3nmr_A Cugbp ELAV-like family 99.7 4.8E-17 1.7E-21 90.9 7.7 61 17-79 92-152 (175)
136 3md3_A Nuclear and cytoplasmic 99.7 2.4E-17 8.2E-22 91.4 6.3 57 21-79 1-57 (166)
137 2j8a_A Histone-lysine N-methyl 99.7 2E-17 7E-22 89.8 5.5 52 20-72 2-57 (136)
138 3pgw_S U1-70K; protein-RNA com 99.7 4.1E-17 1.4E-21 103.3 7.8 61 18-79 100-160 (437)
139 3md3_A Nuclear and cytoplasmic 99.7 8.1E-17 2.8E-21 89.3 8.0 63 16-79 83-145 (166)
140 2fc8_A NCL protein; structure 99.7 5E-17 1.7E-21 84.7 6.2 61 15-79 10-70 (102)
141 2wbr_A GW182, gawky, LD47780P; 99.7 4.4E-17 1.5E-21 83.3 5.6 53 20-79 7-59 (89)
142 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-16 3.7E-21 84.5 7.2 57 16-79 21-77 (109)
143 2g4b_A Splicing factor U2AF 65 99.7 1.3E-16 4.6E-21 89.1 7.9 61 18-79 92-152 (172)
144 2hvz_A Splicing factor, argini 99.7 6E-17 2.1E-21 84.3 6.0 53 21-79 1-53 (101)
145 2dnq_A RNA-binding protein 4B; 99.7 1.3E-16 4.6E-21 81.5 7.1 54 17-79 5-58 (90)
146 1whx_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 86.5 5.4 55 18-79 8-62 (111)
147 2cq2_A Hypothetical protein LO 99.7 5.6E-17 1.9E-21 86.6 5.8 57 16-79 21-79 (114)
148 2la4_A Nuclear and cytoplasmic 99.7 1.1E-16 3.9E-21 83.3 6.9 56 17-79 24-79 (101)
149 2i2y_A Fusion protein consists 99.7 9.8E-17 3.4E-21 88.7 7.0 59 15-79 68-126 (150)
150 2cjk_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 90.3 5.9 60 19-79 86-145 (167)
151 2jvo_A Nucleolar protein 3; nu 99.7 7.7E-17 2.6E-21 85.2 6.1 57 14-79 25-81 (108)
152 1fxl_A Paraneoplastic encephal 99.7 2.4E-16 8.1E-21 87.5 8.2 62 17-79 85-146 (167)
153 3beg_B Splicing factor, argini 99.7 5.1E-17 1.7E-21 86.7 5.2 55 17-79 13-67 (115)
154 1b7f_A Protein (SXL-lethal pro 99.7 2.7E-16 9.4E-21 87.4 8.1 62 17-79 86-147 (168)
155 2qfj_A FBP-interacting repress 99.7 2E-16 7E-21 91.0 7.6 61 18-79 123-183 (216)
156 1fjc_A Nucleolin RBD2, protein 99.7 3.3E-17 1.1E-21 84.6 3.9 57 17-79 13-69 (96)
157 2yh0_A Splicing factor U2AF 65 99.7 2.7E-16 9.2E-21 89.5 7.8 61 18-79 112-172 (198)
158 2e5g_A U6 snRNA-specific termi 99.7 4.6E-16 1.6E-20 80.1 7.7 56 18-79 6-61 (94)
159 2xnq_A Nuclear polyadenylated 99.7 4.3E-16 1.5E-20 80.9 7.2 56 15-79 17-73 (97)
160 2hzc_A Splicing factor U2AF 65 99.7 3.3E-16 1.1E-20 79.4 6.4 55 18-79 4-69 (87)
161 2kvi_A Nuclear polyadenylated 99.7 3E-16 1E-20 81.1 6.0 54 17-79 7-61 (96)
162 2e44_A Insulin-like growth fac 99.6 3.9E-16 1.3E-20 80.5 6.1 59 16-79 11-70 (96)
163 1wf1_A RNA-binding protein RAL 99.6 6E-16 2.1E-20 81.7 6.9 53 18-79 25-78 (110)
164 2dgt_A RNA-binding protein 30; 99.6 6.7E-16 2.3E-20 79.2 6.9 56 15-79 5-60 (92)
165 3egn_A RNA-binding protein 40; 99.6 3E-16 1E-20 86.2 5.8 62 17-79 42-108 (143)
166 2dnp_A RNA-binding protein 14; 99.6 7.9E-16 2.7E-20 78.6 6.9 54 17-79 6-59 (90)
167 2dgu_A Heterogeneous nuclear r 99.6 8.6E-16 2.9E-20 80.3 6.9 54 17-79 8-61 (103)
168 2ghp_A U4/U6 snRNA-associated 99.6 4.7E-16 1.6E-20 93.3 6.7 64 13-79 34-97 (292)
169 1sjr_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 86.6 6.7 57 18-79 44-100 (164)
170 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-15 7.2E-20 78.2 7.9 55 16-79 11-67 (99)
171 4f02_A Polyadenylate-binding p 99.6 1E-15 3.5E-20 88.7 7.2 58 19-79 102-159 (213)
172 3sde_A Paraspeckle component 1 99.6 1.2E-15 4.1E-20 90.8 7.6 60 18-79 94-153 (261)
173 2cqh_A IGF-II mRNA-binding pro 99.6 4.6E-16 1.6E-20 79.9 4.5 55 17-79 5-60 (93)
174 3tyt_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 88.3 6.7 56 18-79 2-58 (205)
175 3pgw_A U1-A; protein-RNA compl 99.6 2.2E-15 7.4E-20 90.0 7.7 60 16-79 5-68 (282)
176 3smz_A Protein raver-1, ribonu 99.6 3.6E-15 1.2E-19 89.2 8.0 61 18-79 93-153 (284)
177 1x5p_A Negative elongation fac 99.6 4.5E-15 1.5E-19 76.8 7.4 55 16-79 11-65 (97)
178 2adc_A Polypyrimidine tract-bi 99.6 2.7E-15 9.4E-20 87.7 7.3 59 15-79 29-88 (229)
179 3zzy_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 81.4 6.5 56 18-79 26-82 (130)
180 3tyt_A Heterogeneous nuclear r 99.6 2.3E-15 7.8E-20 87.2 6.2 58 19-79 122-181 (205)
181 3smz_A Protein raver-1, ribonu 99.6 5.4E-15 1.8E-19 88.4 7.0 62 16-79 180-242 (284)
182 2e5i_A Heterogeneous nuclear r 99.6 7.6E-15 2.6E-19 79.4 6.7 52 21-79 26-78 (124)
183 1wg1_A KIAA1579 protein, homol 99.6 2.3E-15 7.9E-20 76.7 4.4 53 19-79 4-56 (88)
184 1fje_B Nucleolin RBD12, protei 99.6 4.1E-16 1.4E-20 87.5 1.7 63 15-79 8-70 (175)
185 2ghp_A U4/U6 snRNA-associated 99.6 6.8E-15 2.3E-19 88.2 7.0 62 17-79 207-270 (292)
186 3sde_A Paraspeckle component 1 99.6 6.3E-15 2.2E-19 87.6 6.3 58 15-79 17-74 (261)
187 3u1l_A PRE-mRNA-splicing facto 99.5 7.5E-15 2.6E-19 86.9 5.6 56 17-79 131-195 (240)
188 1fje_B Nucleolin RBD12, protei 99.5 9.7E-15 3.3E-19 81.8 5.7 57 17-79 96-152 (175)
189 1qm9_A Polypyrimidine tract-bi 99.5 8.7E-15 3E-19 83.5 5.1 55 19-79 2-57 (198)
190 2pe8_A Splicing factor 45; RRM 99.5 8.3E-14 2.9E-18 73.3 7.8 62 18-79 6-72 (105)
191 3pgw_A U1-A; protein-RNA compl 99.5 5.2E-14 1.8E-18 84.0 7.6 57 17-79 204-260 (282)
192 2bz2_A Negative elongation fac 99.5 3.3E-14 1.1E-18 76.5 5.5 54 17-79 36-89 (121)
193 2g4b_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 78.7 6.3 54 19-79 3-67 (172)
194 3tht_A Alkylated DNA repair pr 99.5 6.8E-14 2.3E-18 86.5 6.4 56 17-79 15-72 (345)
195 2yh0_A Splicing factor U2AF 65 99.5 1.4E-13 4.9E-18 78.2 6.5 54 19-79 3-67 (198)
196 2diu_A KIAA0430 protein; struc 99.5 3.1E-13 1.1E-17 69.8 6.4 50 19-79 8-62 (96)
197 1qm9_A Polypyrimidine tract-bi 99.5 1.8E-13 6.2E-18 78.0 6.2 56 18-79 118-174 (198)
198 2adc_A Polypyrimidine tract-bi 99.4 2.9E-13 1E-17 79.1 6.8 55 19-79 150-205 (229)
199 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4E-18 72.6 1.6 53 25-79 20-84 (104)
200 2dit_A HIV TAT specific factor 99.4 2.4E-12 8.1E-17 68.1 6.7 59 16-79 11-80 (112)
201 2d9o_A DNAJ (HSP40) homolog, s 99.4 7.4E-12 2.5E-16 65.4 8.0 54 20-79 10-70 (100)
202 3v4m_A Splicing factor U2AF 65 99.3 7.5E-12 2.6E-16 65.7 5.9 60 19-79 4-75 (105)
203 1owx_A Lupus LA protein, SS-B, 99.3 1.6E-11 5.5E-16 66.0 6.1 57 15-78 13-71 (121)
204 3ue2_A Poly(U)-binding-splicin 99.2 1.9E-11 6.5E-16 65.5 5.6 61 19-79 19-87 (118)
205 3s6e_A RNA-binding protein 39; 98.9 5.6E-09 1.9E-13 55.5 6.3 57 18-79 5-71 (114)
206 3dxb_A Thioredoxin N-terminall 98.5 1.7E-07 6E-12 54.3 5.2 47 33-79 142-191 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.5 6.5E-07 2.2E-11 45.7 5.9 54 17-79 4-65 (91)
208 2l9w_A U4/U6 snRNA-associated- 98.2 7.4E-06 2.5E-10 43.2 6.5 56 17-79 18-78 (117)
209 1ufw_A Synaptojanin 2; RNP dom 98.2 3.1E-06 1.1E-10 43.5 4.4 54 17-79 12-74 (95)
210 1whv_A Poly(A)-specific ribonu 98.0 2.3E-05 7.8E-10 40.5 5.0 50 19-78 15-64 (100)
211 1uw4_A UPF3X; nonsense mediate 97.9 8.2E-05 2.8E-09 38.0 6.7 56 21-77 2-59 (91)
212 3ctr_A Poly(A)-specific ribonu 97.8 3.3E-05 1.1E-09 40.0 3.7 47 22-78 8-54 (101)
213 2dhx_A Poly (ADP-ribose) polym 97.7 0.00032 1.1E-08 36.5 7.1 52 18-78 6-62 (104)
214 3pq1_A Poly(A) RNA polymerase; 97.5 5.2E-05 1.8E-09 48.7 2.9 53 19-78 52-104 (464)
215 2l08_A Regulator of nonsense t 97.3 0.00028 9.7E-09 36.3 3.4 58 20-77 9-67 (97)
216 1wwh_A Nucleoporin 35, nucleop 97.0 0.0023 7.9E-08 34.1 5.3 55 17-79 21-75 (119)
217 1wey_A Calcipressin 1; structu 96.3 0.0071 2.4E-07 31.5 3.9 54 19-79 4-62 (104)
218 2kn4_A Immunoglobulin G-bindin 96.3 0.0033 1.1E-07 34.3 2.7 27 50-79 3-29 (158)
219 3d45_A Poly(A)-specific ribonu 94.6 0.12 4.3E-06 33.6 6.0 49 20-78 440-488 (507)
220 4f25_A Polyadenylate-binding p 93.0 0.021 7E-07 29.6 0.2 19 18-36 95-113 (115)
221 3p3d_A Nucleoporin 53; structu 92.6 0.14 4.7E-06 27.7 3.1 60 19-79 6-78 (132)
222 4e8u_A Putative uncharacterize 79.1 6.6 0.00023 22.1 6.1 50 20-73 12-72 (172)
223 3fut_A Dimethyladenosine trans 70.5 7.6 0.00026 23.1 4.0 34 20-54 110-143 (271)
224 3uzu_A Ribosomal RNA small sub 61.9 4.4 0.00015 24.2 1.8 34 21-54 115-148 (279)
225 3ftd_A Dimethyladenosine trans 56.5 11 0.00039 21.9 3.0 32 21-52 96-127 (249)
226 1qyr_A KSGA, high level kasuga 54.9 14 0.00049 21.6 3.2 31 21-51 91-121 (252)
227 3tqs_A Ribosomal RNA small sub 53.6 4.7 0.00016 23.7 1.0 32 23-54 99-130 (255)
228 1i4w_A Mitochondrial replicati 52.1 19 0.00065 22.4 3.6 22 22-43 144-165 (353)
229 2g1d_A 30S ribosomal protein S 49.6 8.3 0.00028 19.6 1.4 47 30-77 29-79 (98)
230 2i9x_A Putative septation prot 41.5 33 0.0011 17.0 3.8 26 46-72 5-30 (87)
231 1xn9_A 30S ribosomal protein S 39.1 40 0.0014 17.2 4.1 47 30-77 28-78 (101)
232 2ia9_A Putative septation prot 38.8 40 0.0014 17.2 3.8 26 46-72 5-30 (100)
233 1eij_A Hypothetical protein MT 38.7 33 0.0011 16.8 2.6 20 26-45 50-69 (80)
234 1igq_A Transcriptional repress 38.7 32 0.0011 16.0 3.1 23 48-72 20-42 (62)
235 2rf4_B DNA-directed RNA polyme 37.9 40 0.0014 16.8 2.9 30 15-44 14-43 (87)
236 3ts2_A Protein LIN-28 homolog 36.2 4.8 0.00016 21.9 -0.8 9 63-71 21-29 (148)
237 2i9z_A Putative septation prot 36.0 47 0.0016 17.1 3.8 25 47-72 6-30 (105)
238 1ytr_A Bacteriocin plantaricin 35.2 22 0.00075 13.1 1.3 12 34-45 14-25 (26)
239 2k5n_A Putative cold-shock pro 34.2 17 0.00059 17.3 1.1 11 62-72 13-23 (74)
240 1ywx_A 30S ribosomal protein S 34.0 50 0.0017 16.8 4.3 48 30-78 28-79 (102)
241 2v94_A RPS24, 30S ribosomal pr 33.0 54 0.0018 16.9 4.4 47 30-77 37-87 (107)
242 2yh5_A DAPX protein, BAMC; lip 32.6 23 0.00078 18.7 1.5 49 18-74 11-59 (127)
243 3l3e_A DNA topoisomerase 2-bin 32.6 42 0.0014 16.6 2.5 31 15-46 13-43 (107)
244 3cam_A Cold-shock domain famil 32.3 19 0.00066 16.6 1.1 11 62-72 12-22 (67)
245 2kcm_A Cold shock domain famil 32.3 19 0.00066 17.1 1.1 11 62-72 11-21 (74)
246 1c9o_A CSPB, cold-shock protei 31.9 20 0.00068 16.5 1.1 10 62-71 12-21 (66)
247 2nn4_A Hypothetical protein YQ 31.2 26 0.0009 16.8 1.5 16 33-48 4-19 (72)
248 3a0j_A Cold shock protein; OB- 30.6 21 0.00073 16.8 1.1 10 62-71 12-21 (73)
249 2fh0_A Hypothetical 16.0 kDa p 30.4 41 0.0014 16.5 2.1 19 26-44 48-66 (81)
250 1h95_A CSD, Y-box binding prot 29.9 22 0.00076 17.0 1.1 11 62-72 19-29 (79)
251 2jsh_A Appetite-regulating hor 29.8 16 0.00054 14.0 0.4 21 27-47 2-22 (26)
252 2rd7_A Complement component C8 29.6 54 0.0018 20.3 3.0 20 27-46 195-214 (367)
253 1g6p_A Cold shock protein TMCS 29.6 23 0.00079 16.3 1.1 10 62-71 11-20 (66)
254 3ulj_A LIN28B, DNA-binding pro 29.6 22 0.00076 17.6 1.1 9 62-70 19-27 (90)
255 4aj5_1 SKA3, spindle and kinet 28.8 29 0.001 17.8 1.5 11 35-45 91-101 (101)
256 3i2z_B RNA chaperone, negative 28.2 25 0.00085 16.4 1.1 11 62-72 16-26 (71)
257 4bby_A Alkyldihydroxyacetoneph 26.0 34 0.0012 23.0 1.8 48 28-77 351-402 (658)
258 3h7h_B Transcription elongatio 25.0 76 0.0026 16.1 2.7 26 47-78 41-66 (106)
259 2ytx_A Cold shock domain-conta 25.0 32 0.0011 17.2 1.2 10 63-72 28-37 (97)
260 1hdj_A Human HSP40, HDJ-1; mol 24.8 61 0.0021 14.9 2.5 19 26-44 9-27 (77)
261 2yty_A Cold shock domain-conta 24.8 32 0.0011 16.9 1.2 10 63-72 28-37 (88)
262 2ctp_A DNAJ homolog subfamily 24.4 63 0.0022 14.9 2.5 20 25-44 12-31 (78)
263 1wfq_A UNR protein; beta-barre 24.1 34 0.0012 16.8 1.2 10 63-72 28-37 (89)
264 2q2k_A Hypothetical protein; p 24.1 19 0.00065 16.4 0.2 21 24-44 42-62 (70)
265 3ojy_A Complement component C8 23.4 79 0.0027 21.0 3.1 21 26-46 289-309 (554)
266 2dn9_A DNAJ homolog subfamily 23.4 67 0.0023 14.8 2.5 20 25-44 12-31 (79)
267 3ojy_B Complement component C8 23.1 86 0.0029 20.7 3.2 21 26-46 268-288 (537)
268 2och_A Hypothetical protein DN 22.6 68 0.0023 14.6 2.5 20 25-44 13-32 (73)
269 2cru_A Programmed cell death p 22.1 67 0.0023 16.9 2.1 20 26-45 80-99 (118)
270 3pc6_A DNA repair protein XRCC 21.4 92 0.0032 15.7 3.5 31 17-47 7-37 (104)
271 2ctr_A DNAJ homolog subfamily 21.2 82 0.0028 15.0 2.5 20 25-44 12-31 (88)
272 2cug_A Mkiaa0962 protein; DNAJ 21.0 82 0.0028 15.0 2.5 20 25-44 22-41 (88)
273 3aqq_A Calcium-regulated heat 21.0 49 0.0017 18.0 1.5 11 62-72 73-83 (147)
274 3bgu_A Ferredoxin-like protein 20.8 97 0.0033 15.7 6.0 53 23-77 25-87 (116)
275 2lss_A Cold shock-like protein 25.8 21 0.00073 16.6 0.0 11 62-72 15-25 (70)
276 2ej7_A HCG3 gene; HCG3 protein 20.2 82 0.0028 14.6 2.5 20 25-44 14-33 (82)
277 2xzm_P RPS24E; ribosome, trans 20.0 1.2E+02 0.0042 16.6 4.4 47 30-77 31-81 (149)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=106.53 Aligned_cols=62 Identities=29% Similarity=0.596 Sum_probs=57.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++++|||+|||+++++++|+++|++||.|..++++.++ .+|.++|||||+|.+.++|++|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~afV~f~~~~~A~~A 77 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-VAGHSLGYGFVNYVTAKDAERA 77 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS-SSCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC-CCCcccccEEEEECCHHHHHHH
Confidence 3568899999999999999999999999999999999987 7899999999999999999865
No 2
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=7.8e-21 Score=96.84 Aligned_cols=64 Identities=22% Similarity=0.516 Sum_probs=58.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 69 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP-NTGRSRGFGFILFKDAASVEKV 69 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TTCCEEEEEEEEESSTHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC-CCCccccEEEEEECCHHHHHHH
Confidence 445678999999999999999999999999999999999886 7899999999999999998764
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=101.01 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=57.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++ .+++++|||||+|.+.++|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~-~tg~~rG~aFV~f~~~~~A~~A 64 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP-RTRKHLGLARVLFTSTRGAKET 64 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCceeeEEEEEECCHHHHHHH
Confidence 457899999999999999999999999999999999997 7899999999999999999865
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=100.11 Aligned_cols=58 Identities=31% Similarity=0.566 Sum_probs=54.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcC-CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+|||+|||+++++++|+++|++|| .|..++++.++ .+|.++|||||+|.+.++|++|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~-~t~~~rg~aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK-SSGQSRGFAFVEFSHLQDATRW 60 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS-SSCCCSSEEEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC-CCCCcCceEEEEecCHHHHHHH
Confidence 5899999999999999999999999 79999999987 8899999999999999999865
No 5
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=99.53 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=56.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+++++++|+++|++||.|..+.++.++ . +.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~-~-g~~rG~aFV~F~~~e~a~~A 68 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-H-KAFKGSIFVVFDSIESAKKF 68 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC-T-TSCCCEEEEEESSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC-C-CCCccEEEEEECCHHHHHHH
Confidence 4457899999999999999999999999999999999995 4 99999999999999999764
No 6
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=98.80 Aligned_cols=67 Identities=24% Similarity=0.563 Sum_probs=60.1
Q ss_pred cCcccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 12 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+......++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 73 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP-DTEHSKGCAFAQFMTQEAAQKC 73 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS-SSCCBCSEEEEEESSHHHHHHH
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCCCccEEEEEECCHHHHHHH
Confidence 334456678999999999999999999999999999999999987 7889999999999999998764
No 7
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=5.4e-21 Score=99.42 Aligned_cols=62 Identities=21% Similarity=0.389 Sum_probs=56.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCC--eeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGE--LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...-.+|||+|||+.+++++|+++|++||. +..|+++.++ .+|+++|||||+|.+.++|++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~-~tg~srG~aFV~f~~~~~A~~A 69 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK-QTQQNRGFAFVQLSSAMDASQL 69 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS-SSSSCSSEEEEECSSSHHHHHH
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC-CCCCCceEeEEEECCHHHHHHH
Confidence 445679999999999999999999999995 6789999997 8899999999999999998864
No 8
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=96.94 Aligned_cols=64 Identities=31% Similarity=0.648 Sum_probs=58.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 73 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL-KTGHSKGFGFVRFTEYETQVKV 73 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS-SSCSEEEEEEEEESSHHHHHHH
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC-CCCCccceEEEEECCHHHHHHH
Confidence 345567899999999999999999999999999999999986 7899999999999999999864
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=3.2e-20 Score=98.89 Aligned_cols=64 Identities=17% Similarity=0.386 Sum_probs=58.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 83 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK-QTNLSKCFGFVSYDNPVSAQAA 83 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS-SSCSEEEEEEEECSSHHHHHHH
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCCcCccEEEEECCHHHHHHH
Confidence 444567899999999999999999999999999999999886 6899999999999999998764
No 10
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=98.39 Aligned_cols=66 Identities=24% Similarity=0.530 Sum_probs=59.6
Q ss_pred CcccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 13 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
........++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR-QTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS-SSCCCCSEEEEEESSHHHHHHH
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC-CCCccceEEEEEECCHHHHHHH
Confidence 34455678999999999999999999999999999999999987 7899999999999999999864
No 11
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=97.75 Aligned_cols=65 Identities=26% Similarity=0.429 Sum_probs=59.2
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....+.++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~a 74 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK-TTNQSRGFGFVKFKDPNCVGTV 74 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS-SSCCEEEEEEEEESSTTHHHHH
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCCcceEEEEEECCHHHHHHH
Confidence 3446678999999999999999999999999999999999987 7899999999999999998764
No 12
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.2e-20 Score=97.53 Aligned_cols=64 Identities=20% Similarity=0.495 Sum_probs=58.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 71 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR-FTGMHKGCAFLTYCERESALKA 71 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS-SSCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCCCcceEEEEEECCHHHHHHH
Confidence 445668899999999999999999999999999999999987 7899999999999999998764
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=95.65 Aligned_cols=64 Identities=28% Similarity=0.491 Sum_probs=58.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 68 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA-EKQRPRGFGFITFEDEQSVDQA 68 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT-TTCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCCCceEEEEECCHHHHHHH
Confidence 345567999999999999999999999999999999999887 7889999999999999999864
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=96.43 Aligned_cols=64 Identities=25% Similarity=0.484 Sum_probs=58.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 73 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR-VTGQHQGYGFVEFLSEEDADYA 73 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS-SSCSBCSCEEEEESSHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCcCCcEEEEEECCHHHHHHH
Confidence 445678999999999999999999999999999999999986 6899999999999999999864
No 15
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=96.50 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=58.6
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 81 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-RTGYLKGYTLVEYETYKEAQAA 81 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTSSEEEEEEEEESCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC-CCCceeeEEEEEECCHHHHHHH
Confidence 3445567899999999999999999999999999999999887 7899999999999999998764
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=96.71 Aligned_cols=65 Identities=20% Similarity=0.432 Sum_probs=58.9
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 71 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP-HTKAPRGFAFVRFHDRRDAQDA 71 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS-SSCSBCSCEEEEESSSSHHHHH
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCCCCeEEEEEECCHHHHHHH
Confidence 3445668999999999999999999999999999999999887 7789999999999999998764
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.9e-20 Score=96.11 Aligned_cols=65 Identities=71% Similarity=1.082 Sum_probs=58.8
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecc-cCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK-MVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.......++|||+|||+.+++++|+++|++||.|..+.++.+ + .++.++|||||+|.+.++|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT-GTGAHRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCS-SSCSSCSEEEEEESSHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCC-CCCCcCceEEEEECCHHHHHHH
Confidence 344567899999999999999999999999999999999887 5 6899999999999999999864
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=94.93 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=58.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 74 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK-DTRKSKGVAFILFLDKDSAQNC 74 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS-SSCCCTTCEEEEESCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCcccEEEEEECCHHHHHHH
Confidence 445668899999999999999999999999999999999886 7788999999999999998764
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=95.18 Aligned_cols=65 Identities=26% Similarity=0.520 Sum_probs=58.5
Q ss_pred CcccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 13 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......+.++|||+|||+.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A 74 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN--RAGKPKGLAYVEYENESQASQA 74 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC--TTSCEEEEEEEEESSHHHHHHH
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC--CCCCEEeEEEEEECCHHHHHHH
Confidence 3444567899999999999999999999999999999999998 5889999999999999998764
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=9.2e-20 Score=97.03 Aligned_cols=65 Identities=23% Similarity=0.498 Sum_probs=58.9
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....+.++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 73 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM-ATGKSKGYGFVSFFNKWDAENA 73 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCCcceEEEEEECCHHHHHHH
Confidence 3445678999999999999999999999999999999999886 6899999999999999999864
No 21
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=96.29 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=56.8
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeE-EEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKF-VRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|.+||.|.. +.++.+ .+++++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A 73 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKA 73 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC--CCCCcceEEEEEECCHHHHHHH
Confidence 34566799999999999999999999999999987 888887 6899999999999999999865
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=94.66 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=57.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 73 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ-QSRRSRGFAFVYFENVDDAKEA 73 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS-SSSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC-CCCCcccEEEEEECCHHHHHHH
Confidence 334567899999999999999999999999999999999886 7789999999999999999864
No 23
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=100.10 Aligned_cols=62 Identities=23% Similarity=0.464 Sum_probs=56.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 85 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP-ASKRSRGFGFVTFSSMAEVDAA 85 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT-TTSSCCSEEEEECSSHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCcCceEEEEeCCHHHHHHH
Confidence 3446899999999999999999999999999999999987 7899999999999999998764
No 24
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=93.55 Aligned_cols=61 Identities=16% Similarity=0.385 Sum_probs=56.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~a~~A 63 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK-TTNKCKGYGFVDFDSPSAAQKA 63 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS-SSCSCCSEEEEEESCHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCCcCcEEEEEECCHHHHHHH
Confidence 467899999999999999999999999999999999887 7899999999999999999864
No 25
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.2e-19 Score=95.25 Aligned_cols=61 Identities=25% Similarity=0.416 Sum_probs=56.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A 72 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG--PDGSSKGCAFVKFSSHTEAQAA 72 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC--SSSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcCcEEEEEeCCHHHHHHH
Confidence 456899999999999999999999999999999999998 5789999999999999999764
No 26
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=7.8e-20 Score=92.61 Aligned_cols=62 Identities=24% Similarity=0.451 Sum_probs=57.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 65 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-ETEKHRGFAFVEFELAEDAAAA 65 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET-TTTEECSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC-CCCccccEEEEEECCHHHHHHH
Confidence 4567999999999999999999999999999999998887 7889999999999999999764
No 27
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=94.73 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=56.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A 73 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR--EGKPKSFGFVCFKHPESVSYA 73 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSTHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCCceEEEEEECCHHHHHHH
Confidence 345567899999999999999999999999999999999984 589999999999999999764
No 28
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=92.89 Aligned_cols=61 Identities=25% Similarity=0.519 Sum_probs=55.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 64 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM-ATGKSKGYGFVSFFNKWDAENA 64 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 457899999999999999999999999999999999886 7899999999999999999864
No 29
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=7.3e-20 Score=97.81 Aligned_cols=63 Identities=19% Similarity=0.414 Sum_probs=57.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++|||+|||+++++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A 98 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK-QTSLSKCFGFVSFDNPDSAQVA 98 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS-SSSCCCCEEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCCcCcEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999999887 7899999999999999998764
No 30
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=9.4e-20 Score=96.35 Aligned_cols=65 Identities=26% Similarity=0.455 Sum_probs=58.7
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 84 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR-RTGFSKGYALVEYETHKQALAA 84 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT-TTSSBCSEEEEEESSHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcceEEEEEECCHHHHHHH
Confidence 3445667899999999999999999999999999999999886 7899999999999999998764
No 31
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=94.80 Aligned_cols=62 Identities=18% Similarity=0.339 Sum_probs=57.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCee-EEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELK-FVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|. .+.++.++ .++.++|||||+|.+.++|++|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 68 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR-LTGIPAGYCFVEFADLATAEKC 68 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS-SSCCEEEEEEEECSCHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC-CCCCcCCEEEEEeCCHHHHHHH
Confidence 45679999999999999999999999999999 99999987 7899999999999999999864
No 32
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=4.8e-20 Score=97.68 Aligned_cols=64 Identities=28% Similarity=0.523 Sum_probs=55.0
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~tg~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-LTKRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT-TTCCCTTCEEEEESSHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC-CCCCcCcEEEEEECCHHHHHHH
Confidence 334567999999999999999999999999999999999986 7899999999999999998764
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=94.54 Aligned_cols=62 Identities=26% Similarity=0.557 Sum_probs=57.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 66 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS-LTKKPKGFAFVTFMFPEHAVKA 66 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT-TTCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-CCCCcCeEEEEEECCHHHHHHH
Confidence 4567899999999999999999999999999999999886 6899999999999999998764
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-20 Score=96.26 Aligned_cols=64 Identities=27% Similarity=0.575 Sum_probs=58.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 73 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK-TTGQSKGFAFISFHRREDAARA 73 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS-SSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC-CCCceeeEEEEEECCHHHHHHH
Confidence 345568999999999999999999999999999999999886 7899999999999999999864
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=94.16 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=58.8
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeE--------EEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKF--------VRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.......++|||+|||+.+++++|+++|++||.|.. +.++.++ .+|.++|||||+|.+.++|++|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-~~g~~~G~afV~f~~~~~a~~A 79 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-ETGKLKGEATVSFDDPPSAKAA 79 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT-TTCSEEEEEEEEBSSHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC-CCCCeeeEEEEEECCHHHHHHH
Confidence 344566899999999999999999999999999999 9999887 7899999999999999998764
No 36
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=2.2e-20 Score=97.65 Aligned_cols=61 Identities=26% Similarity=0.453 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCCC------CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPF------QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+ .+++++|+++|++||.|..+.++.++ .+|+++|||||+|.+.++|++|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~-~tg~~kG~afV~f~~~~~A~~A 70 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE-ATGKTKGFLFVECGSMNDAKKI 70 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET-TTTEECSEEEEEESSHHHHHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC-CCCccceEEEEEECCHHHHHHH
Confidence 3468999999999 99999999999999999999999997 7799999999999999999865
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=95.07 Aligned_cols=63 Identities=22% Similarity=0.531 Sum_probs=56.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCC-CCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS-GLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|.+|| |..+.++.++ .+ +.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~-~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP-SNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS-SCTTSBCSCEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC-CCCCCcCeEEEEEECCHHHHHHH
Confidence 3345679999999999999999999999999 9999999886 55 89999999999999999864
No 38
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=95.83 Aligned_cols=65 Identities=20% Similarity=0.474 Sum_probs=58.8
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+......++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A 84 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS-ETGRSKGYGFITFSDSECAKKA 84 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET-TTTEEEEEEEEEESCHHHHHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCccceEEEEEECCHHHHHHH
Confidence 3445667899999999999999999999999999999999887 7889999999999999999864
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=92.73 Aligned_cols=61 Identities=25% Similarity=0.537 Sum_probs=56.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 63 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS-DTGRSKGYGFITFSDSECARRA 63 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS-SSCCCCSEEEEEESCHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC-CCCceeeEEEEEECCHHHHHHH
Confidence 467899999999999999999999999999999999987 7899999999999999999764
No 40
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=93.95 Aligned_cols=63 Identities=27% Similarity=0.535 Sum_probs=57.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-ETQRSRGFGFVTFENIDDAKDA 70 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS-SSCSCCSEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCCcccEEEEEECCHHHHHHH
Confidence 34567999999999999999999999999999999999886 7888999999999999998764
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=2.1e-19 Score=93.05 Aligned_cols=59 Identities=15% Similarity=0.399 Sum_probs=55.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 60 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP-QTGRSKGYAFIEFRDLESSASA 60 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-TTCCBCSEEEEEESSHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCccceEEEEEECCHHHHHHH
Confidence 5799999999999999999999999999999999886 7899999999999999999764
No 42
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-20 Score=97.64 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=55.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR-NSRRSKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC-CSSSCCCCEEEEESCGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC-CCCccCcEEEEEeCcHHHHHHH
Confidence 35799999999999999999999999999999999887 7789999999999999998864
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=1.6e-19 Score=91.05 Aligned_cols=58 Identities=22% Similarity=0.456 Sum_probs=54.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~a~~a 59 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNA 59 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC-CCCCccceEEEEECCHHHHHHH
Confidence 689999999999999999999999999999999887 7899999999999999998764
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.4e-19 Score=96.66 Aligned_cols=58 Identities=24% Similarity=0.470 Sum_probs=52.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+++++++|+++|++||.|..++++.++ +.++|||||+|.+.++|++|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~---~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE---NGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---TEEEEEEEEEESCHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC---CCCCceEEEEECCHHHHHHH
Confidence 35689999999999999999999999999999999873 45789999999999999865
No 45
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.3e-19 Score=98.65 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=58.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ-QSRRSRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS-SSSCCCCEEEEEESCHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 445567899999999999999999999999999999999887 7889999999999999999864
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.3e-19 Score=93.94 Aligned_cols=62 Identities=26% Similarity=0.511 Sum_probs=56.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|++|| |..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK-DTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS-SSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC-CCCccceEEEEEECCHHHHHHH
Confidence 345678999999999999999999999997 9999999987 7899999999999999999864
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4e-20 Score=94.90 Aligned_cols=58 Identities=14% Similarity=0.390 Sum_probs=52.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcC--CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFG--ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+|||+|||+++++++|+++|++|| .|..++++.++ .+|+++|||||+|.+.++|++|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~-~~g~~kG~afV~f~~~~~a~~A 61 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKL 61 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT-TTCCEEEEEEECC-CHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC-CCCccCcEEEEEECCHHHHHHH
Confidence 5799999999999999999999999 99999999987 7899999999999999998865
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.4e-19 Score=91.48 Aligned_cols=60 Identities=27% Similarity=0.448 Sum_probs=55.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~a 64 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK-FSGHPKGFAYIEFSDKESVRTS 64 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC-SSSSCCEEEEEEESSTHHHHHH
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC-CCCCcceEEEEEECCHHHHHHH
Confidence 45899999999999999999999999999999999886 6899999999999999998764
No 49
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=100.76 Aligned_cols=60 Identities=10% Similarity=0.349 Sum_probs=55.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcC--CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFG--ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+++++++|+++|++|| .|..++++.++ .+|+++|||||+|.+.++|++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~-~tg~skGfaFV~f~~~~~A~~A 115 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR-ANGQSKGYAEVVVASENSVHKL 115 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 458999999999999999999999999 99999999987 8899999999999999999865
No 50
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=1e-19 Score=90.37 Aligned_cols=57 Identities=30% Similarity=0.546 Sum_probs=53.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 22 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+|||+|||+++++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK-TTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS-SSTTSCBEEEEECSCHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcCcEEEEEECCHHHHHHH
Confidence 58999999999999999999999999999999886 6899999999999999998764
No 51
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-20 Score=92.28 Aligned_cols=58 Identities=29% Similarity=0.551 Sum_probs=54.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
++|||+|||+++++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~a 58 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-LTKRSRGFGFVTFMDQAGVDKV 58 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC-CSSSCSSEEEECCCCTTHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC-CCCCcCceEEEEEcCHHHHHHH
Confidence 579999999999999999999999999999999886 7899999999999999998764
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=93.06 Aligned_cols=62 Identities=19% Similarity=0.385 Sum_probs=56.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHh-cCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKA-FGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|.+ ||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A 67 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD--QTGVSKGYGFVKFTDELEQKRA 67 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC--TTCCEEEEEEEEESCHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC--CCCCccceEEEEECCHHHHHHH
Confidence 3456789999999999999999999999 999999999998 5888999999999999998764
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.7e-19 Score=96.56 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=58.8
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+....+.++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 80 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-RTGYLKGYTLVEYETYKEAQAA 80 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-TTSSBCSCEEEEESSHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 3445567899999999999999999999999999999999886 6899999999999999999865
No 54
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=94.55 Aligned_cols=63 Identities=25% Similarity=0.560 Sum_probs=57.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|.+||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~--~~g~~~g~afV~f~~~~~a~~A 82 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD--SSGTSRGVGFARMESTEKCEAV 82 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSCEEEEEEEEESCHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC--CCCCcceEEEEEECCHHHHHHH
Confidence 44556799999999999999999999999999999999998 5889999999999999998764
No 55
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=96.76 Aligned_cols=64 Identities=23% Similarity=0.426 Sum_probs=58.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 121 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-ETEKHRGFAFVEFELAEDAAAA 121 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT-TTCCCCSEEEEEESCHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC-CCCCcCcEEEEEECCHHHHHHH
Confidence 334567899999999999999999999999999999999887 7889999999999999999864
No 56
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=6.9e-20 Score=90.95 Aligned_cols=57 Identities=28% Similarity=0.582 Sum_probs=53.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 22 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 57 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN-KTNKRRGFCFITFKEEEPVKKI 57 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC-CCSSSCCCEEEECSSSHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCCcCCEEEEEECCHHHHHHH
Confidence 58999999999999999999999999999999887 7899999999999999998764
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=94.53 Aligned_cols=62 Identities=24% Similarity=0.451 Sum_probs=57.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-ETEKHRGFAFVEFELAEDAAAA 70 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS-SSCCCSSEEEECCSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecC-CCCCcceEEEEEECCHHHHHHH
Confidence 4568999999999999999999999999999999999887 7889999999999999999864
No 58
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=94.37 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=51.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~A 68 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTM 68 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHH
Confidence 456799999999999999999999999999999998775 49999999999998764
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=93.43 Aligned_cols=61 Identities=18% Similarity=0.403 Sum_probs=56.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEE-EeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFV-RLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+ .++.++ .++.++|||||+|.+.++|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A 64 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP-DTGNSKGYAFINFASFDASDAA 64 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT-TTCSCCSEEEEEBSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC-CCCCcCeEEEEEECCHHHHHHH
Confidence 357899999999999999999999999999999 998886 7899999999999999999864
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=97.07 Aligned_cols=62 Identities=23% Similarity=0.498 Sum_probs=57.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|+.||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR-ETRQSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET-TTTEEEEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-CCCCcceEEEEEECCHHHHHHH
Confidence 4556899999999999999999999999999999999887 7889999999999999999864
No 61
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=96.23 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=56.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCe-eEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGEL-KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++|||+|||+++++++|+++|++||.| ..++++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d--~~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD--NNGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC--TTSSCSSCEEEECSSHHHHHHH
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC--CCCCcceEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999 88999998 5899999999999999999865
No 62
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=92.64 Aligned_cols=61 Identities=26% Similarity=0.538 Sum_probs=55.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCC---CCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG---SGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++ . ++.++|||||+|.+.++|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~gt~~~~g~afV~f~~~~~a~~A 66 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK-NKAGVLLSMGFGFVEYKKPEQAQKA 66 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE-CTTCCEEEEEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCCCcCcccEEEEEECCHHHHHHH
Confidence 457899999999999999999999999999999998875 3 458999999999999999864
No 63
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=98.70 Aligned_cols=63 Identities=24% Similarity=0.427 Sum_probs=56.1
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeE--EEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKF--VRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|.. |+++.++ .+|+++|||||+|.+. +|.+|
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~-~tg~~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK-QTQLNRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS-SSSSBCSCEEEECCHH-HHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC-CCCCcceEEEEEECCH-HHHHH
Confidence 33456789999999999999999999999999976 9999997 7999999999999999 87654
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.9e-19 Score=92.70 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=55.2
Q ss_pred cCcccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 12 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.......+.++|||+|||+.+++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|++|
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A 77 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDA 77 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHH
Confidence 33445567799999999999999999999999999999998554 45789999999999999864
No 65
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=3.6e-19 Score=103.25 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+++++++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~A 73 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM-ITRRSLGYAYVNFQQPADAERA 73 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeccc-CCCCccccccceeCCHHHHHHH
Confidence 346899999999999999999999999999999999987 7899999999999999999865
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5.6e-19 Score=92.88 Aligned_cols=63 Identities=33% Similarity=0.505 Sum_probs=57.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|.+||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A 86 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD--RSGRSLGTADVHFERKADALKA 86 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC--TTSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcceEEEEEECCHHHHHHH
Confidence 34456789999999999999999999999999999999998 5889999999999999999864
No 67
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.6e-19 Score=96.05 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=56.7
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCC---eeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|++||. |..++++.++ .|+++|||||+|.+.++|++|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~--~g~~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR--EGRQSGEAFVELESEDDVKLA 77 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS--SSCEEEEEEEEBSSHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC--CCCCCeEEEEEECCHHHHHHH
Confidence 33556789999999999999999999999998 8999999985 599999999999999999865
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=94.34 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=57.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCee--------EEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELK--------FVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|. .+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 81 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK-ETGKPKGDATVSYEDPPTAKAA 81 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT-TTCSBCSEEEEEBSSHHHHHHH
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC-CCCCeeeEEEEEECCHHHHHHH
Confidence 3456789999999999999999999999999998 69998887 7899999999999999999865
No 69
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=95.61 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=52.0
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~A 83 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTM 83 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHH
Confidence 34456789999999999999999999999999999998876 59999999999999865
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=94.77 Aligned_cols=61 Identities=21% Similarity=0.398 Sum_probs=56.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+++++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~F~~~~~A~~A 64 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD--RTSKSRGFAFITFENPADAKNA 64 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS--TTTTCCCEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC--CCCCcccEEEEEECCHHHHHHH
Confidence 456789999999999999999999999999999999998 5889999999999999999865
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=91.22 Aligned_cols=63 Identities=30% Similarity=0.561 Sum_probs=55.8
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.......++|||+|||+.+++++|+++|++||.|..+.++.++ . .++|||||+|.+.++|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~-~~~g~afV~f~~~~~a~~A 71 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--R-GSKGFGFVTFENSADADRA 71 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--T-TTCCEEEEEESCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--C-CCcEEEEEEECCHHHHHHH
Confidence 3445678999999999999999999999999999999999873 3 3889999999999999864
No 72
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-20 Score=98.32 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=54.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.+. .+|.++|||||+|.+.++|++|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-~~g~~~G~afV~F~~~~~a~~A 83 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-PNGKATGEGFVEFRNEADYKAA 83 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-TTSSEEEEEEEEBSSSHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-CCCCCCeEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999998875454444 7899999999999999998865
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.9e-20 Score=95.32 Aligned_cols=62 Identities=24% Similarity=0.533 Sum_probs=56.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A 66 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR-ETGKPKGYGFCEYQDQETALSA 66 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET-TTTEEEEEEEEECSCHHHHHHH
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC-CCCccceEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999999999886 7899999999999999999864
No 74
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.6e-19 Score=94.38 Aligned_cols=61 Identities=23% Similarity=0.583 Sum_probs=55.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A 66 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD--RTGVSKGYGFVSFYNDVDVQKI 66 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC--TTSCEEEEEEEEESSCCCHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC--CCCCccceEEEEECCHHHHHHH
Confidence 445689999999999999999999999999999999998 5889999999999999998764
No 75
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=4.8e-19 Score=96.16 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=54.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCee--EEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELK--FVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|++| .|. .|.++.++ .|+++|||||+|.+.++|++|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~--~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP--EGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS--SSSSCSEEEEEESSTTHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC--CCCCceEEEEEECCHHHHHHH
Confidence 334567899999999999999999999999 577 89999985 499999999999999999865
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.7e-19 Score=93.06 Aligned_cols=62 Identities=26% Similarity=0.408 Sum_probs=56.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|.+||.|..+.++.+ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~--~~g~~~g~afV~f~~~~~a~~A 72 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED--KDGKSRGIGTVTFEQSIEAVQA 72 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC--TTCSEEEEEEEEESSHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCeeeEEEEEECCHHHHHHH
Confidence 3456789999999999999999999999999999999998 4689999999999999998764
No 77
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=2.7e-19 Score=98.24 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=56.8
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCC---eeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|++||. |..++++.++ .|+++|||||+|.+.++|++|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~--~g~srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR--EGRQSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS--SSCEEEEEEEECSSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC--CCCCCeEEEEEECCHHHHHHH
Confidence 34456789999999999999999999999998 8899999985 499999999999999999865
No 78
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=9e-19 Score=97.53 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=57.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..|.++.++ .++.++|||||+|.+.++|++|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A 97 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-MKKTACGFCFVEYYSRADAENA 97 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 3467899999999999999999999999999999999987 7889999999999999999865
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=93.91 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=54.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+++++++|+++|++||. ..++++.+ .+++++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d--~~g~~~G~afV~F~~~~~a~~A 71 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIG--PDGRVTGEADVEFATHEDAVAA 71 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEES--SSSCEEEEEEEECSSSHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEEC--CCCCEeeEEEEEECCHHHHHHH
Confidence 3456789999999999999999999999995 49999998 5899999999999999999865
No 80
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=89.21 Aligned_cols=57 Identities=25% Similarity=0.482 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCCC------CHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 20 GSKILVRNIPFQA------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 20 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.++|||+|||+.+ ++++|+++|++||.|..+.++. .+|.++|||||+|.+.++|++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~---~~g~~~g~afV~f~~~~~A~~A 63 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE---EDGKTKGYIFLEYASPAHAVDA 63 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC---BTTBCCCEEEEEESSHHHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC---CCCcEeEEEEEEECCHHHHHHH
Confidence 3789999999999 7799999999999999999883 5789999999999999999865
No 81
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=96.07 Aligned_cols=60 Identities=23% Similarity=0.479 Sum_probs=54.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+++++++|+++|++| .|..++++.++ .|+++|||||+|.+.++|++|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~--~g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH--VGRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT--TCCCCSEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC--CCCCCeEEEEEECCHHHHHHH
Confidence 4446899999999999999999999999 79999999984 599999999999999999865
No 82
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=95.15 Aligned_cols=61 Identities=25% Similarity=0.470 Sum_probs=53.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCC---CCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS---GLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+++++++|+++|++||.|. +.++.++ .+ |+++|||||+|.+.++|++|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~-~~~~~g~~~G~aFV~f~~~~~a~~A 68 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKA-ESKSYFPPKGYAFLLFQEESSVQAL 68 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSS-SSCCCSCTTSEEEECCSSHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecC-CCCCCCCcccEEEEEECCHHHHHHH
Confidence 34578999999999999999999999999999 7777765 44 78999999999999998764
No 83
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=98.27 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=55.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCe----eEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGEL----KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+++++++|+++|++||.| ..|.++.+ .+|+++|||||+|.+.++|++|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d--~~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY--PDGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC--TTSCEEEEEEECCSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC--CCCCEeeEEEEEECCHHHHHHH
Confidence 4567899999999999999999999999875 68999888 6899999999999999999865
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=92.91 Aligned_cols=62 Identities=24% Similarity=0.440 Sum_probs=54.6
Q ss_pred ccCCCCCeEEEeCCCCCC------CHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQA------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+ ++++|+++|++||.|..+.++ . .+|.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~--~~g~~~G~afV~f~~~~~A~~A 77 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E--EDGKTKGYIFLEYASPAHAVDA 77 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-C--BTTBSCCEEEEEECSSSHHHHH
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-C--CCCCeeeEEEEEECCHHHHHHH
Confidence 344557899999999999 789999999999999999988 3 5789999999999999998764
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=91.90 Aligned_cols=62 Identities=23% Similarity=0.472 Sum_probs=56.1
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A 71 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKA 71 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHH
Confidence 44567899999999999999999999999999999999876 688899999999999999864
No 86
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=5.8e-19 Score=100.48 Aligned_cols=64 Identities=20% Similarity=0.412 Sum_probs=58.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 71 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP-NTKRSRGFGFVTYATVEEVDAA 71 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcC-CCCCccceEEEEeCCHHHHHHH
Confidence 345567899999999999999999999999999999999886 7889999999999999999864
No 87
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=90.56 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=54.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~g~afV~f~~~~~a~~A 71 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH---TSNDPYCFVEFYEHRDAAAA 71 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC---CSSCCEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC---CCCCCEEEEEECCHHHHHHH
Confidence 445678999999999999999999999999999999999874 23689999999999999764
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=90.04 Aligned_cols=60 Identities=20% Similarity=0.515 Sum_probs=54.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCC-cceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL-HRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+++++++|+++|++||.|..+.++.++ .++. ++|||||+|.+.++|++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~~~~~~g~afV~f~~~~~a~~A 63 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER-MHPHLSKGYAYVEFENPDEAEKA 63 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET-TEEEEECSEEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC-CCCCCCCcEEEEEEecHHHHHHH
Confidence 56899999999999999999999999999999998885 4444 899999999999999864
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.4e-18 Score=89.13 Aligned_cols=60 Identities=25% Similarity=0.515 Sum_probs=54.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a 64 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERA 64 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHH
Confidence 456899999999999999999999999999999998864 688999999999999998764
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9e-19 Score=92.35 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=55.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCC-eeEEEee-cccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGE-LKFVRLP-KKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+.+++++|+++|.+||. |..+.++ .++ .++.++|||||+|.+.++|++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~-~~g~~~g~afV~f~~~~~A~~A 68 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA-DKMKNRGFAFVEYESHRAAAMA 68 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC-TTTTTCCEEEEEESSHHHHHHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC-CCCCcCcEEEEEecCHHHHHHH
Confidence 45789999999999999999999999998 9999998 665 6789999999999999998764
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=9.9e-19 Score=98.26 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=57.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+.+|.+||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 130 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR-RTGFSKGYALVEYETHKQALAA 130 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC-CCCcEeeEEEEEECCHHHHHHH
Confidence 344557889999999999999999999999999999999887 7899999999999999998764
No 92
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=89.51 Aligned_cols=58 Identities=29% Similarity=0.489 Sum_probs=49.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
......++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHH
Confidence 34567899999999999999999999999999999998764 57999999999999863
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.2e-18 Score=96.97 Aligned_cols=62 Identities=23% Similarity=0.465 Sum_probs=57.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A 128 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDA 128 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS-SCTTSCCEEEEEESBHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCccceEEEEEECCHHHHHHH
Confidence 3457899999999999999999999999999999999986 7899999999999999998764
No 94
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=94.16 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=56.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCC---eeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+++++++|+++|++||. |..++++.++ .|+++|||||+|.+.++|++|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~--~g~~~G~afV~F~~~~~a~~A 71 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR--DGKRRGDALIEMESEQDVQKA 71 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT--TSTTCSEEEEEBSSHHHHHHH
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999988 8999999985 499999999999999998864
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-19 Score=92.79 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=55.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~A 73 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAA 73 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC-SSSCEEEEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC-CCCCeeeEEEEEECCHHHHHHH
Confidence 4456899999999999999999999999999887777766 7889999999999999999864
No 96
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=9e-19 Score=94.25 Aligned_cols=60 Identities=18% Similarity=0.426 Sum_probs=55.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK-FSGHPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC-TTSSCEEEEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCCcccEEEEEECCHHHHHHH
Confidence 46899999999999999999999999999999999886 7899999999999999998764
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=93.17 Aligned_cols=62 Identities=32% Similarity=0.516 Sum_probs=56.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|++|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A 92 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD--RSGRSLGTADVHFERRADALKA 92 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC--SSSSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC--CCCCEeeEEEEEECCHHHHHHH
Confidence 3456789999999999999999999999999999999998 5888999999999999998764
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=4.1e-19 Score=97.23 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=58.5
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+....+.++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~g~~~G~afV~F~~~~~A~~A 105 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDA 105 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS-SSSSCCSCCEEECSCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 3445567899999999999999999999999999999999886 6899999999999999998864
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=88.49 Aligned_cols=61 Identities=23% Similarity=0.464 Sum_probs=56.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|++| .|..+.++.+ .+|+++|||||+|.+.++|++|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A 66 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQA 66 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHH
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC--CCCCCceEEEEEECCHHHHHHH
Confidence 34567999999999999999999999999 8999999988 6899999999999999999865
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=90.76 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~A 67 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITM 67 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHH
Confidence 456789999999999999999999999999999988765 59999999999998764
No 101
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=3.2e-19 Score=92.01 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=54.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|.+||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~A 73 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAA 73 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC-TTSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC-CCCCEeeEEEEEECCHHHHHHH
Confidence 346899999999999999999999999999888887776 7889999999999999998864
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=90.34 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=50.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~A 67 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKEC 67 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHH
Confidence 455789999999999999999999999999999988664 59999999999998764
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=92.67 Aligned_cols=64 Identities=22% Similarity=0.515 Sum_probs=53.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+++++++|+++|++|| |..+.++.++..+|+++|||||+|.+.++|++|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 77 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 77 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHH
Confidence 3455679999999999999999999999999 999999887423788999999999999999864
No 104
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=1.3e-18 Score=102.31 Aligned_cols=60 Identities=13% Similarity=0.372 Sum_probs=55.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcC--CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFG--ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+.+++++|+++|++|| .|..|+|+.++ .+++++|||||+|.+.++|++|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~-~tg~skGfaFV~f~~~~~a~~A 128 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKL 128 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT-TTCCEEEEEEEEESCTTHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC-CCCccceEEEEEECCHHHHHHH
Confidence 567899999999999999999999999 99999999997 7999999999999999998765
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=91.85 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+ .+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~A 68 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAA 68 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHH
Confidence 34678999999999 9999999999999999999998776 38999999999999764
No 106
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=89.31 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|.++.++.. +|+|||+|.+.++|.+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~A 73 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNA 73 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHH
Confidence 446789999999999999999999999999999988764 48999999999999765
No 107
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=1.3e-18 Score=96.99 Aligned_cols=60 Identities=22% Similarity=0.538 Sum_probs=56.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+++++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A 61 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP-ATGRSRGFGFLSFEKPSSVDEV 61 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT-TTSSCCSCEEEEESSTHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC-CCCCccceEEEEEccHHHHHHH
Confidence 46899999999999999999999999999999999986 7899999999999999998764
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=91.40 Aligned_cols=63 Identities=29% Similarity=0.534 Sum_probs=55.6
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.......++|||+|||+.+++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|++|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~~kg~afV~f~~~~~A~~A 85 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE---RGSKGFGFVTFENSADADRA 85 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT---TBCTTEEEEECCCSHHHHHH
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC---CCCceEEEEEECCHHHHHHH
Confidence 3445668999999999999999999999999999999998873 34889999999999998864
No 109
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=4.5e-19 Score=97.67 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=53.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+++++++|+++|++|| +..+.++.++ .++++|||||+|.+.++|++|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~--~g~srGfaFV~F~~~e~A~~A 102 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP--DGRVTGEADVEFATHEEAVAA 102 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS--SSCSSCCCEEECSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC--CCCCceEEEEEeCCHHHHHHH
Confidence 345678999999999999999999999999 7799999985 599999999999999999865
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=5e-19 Score=90.55 Aligned_cols=57 Identities=32% Similarity=0.532 Sum_probs=52.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.+ |++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~-a~~a 58 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR-ETKKPKGFGFVEMQEES-VSEA 58 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS-SSCCCCEEEEEEECTTH-HHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC-CCCCcceEEEEEECCHH-HHHH
Confidence 589999999999999999999999999999999887 77999999999999999 7654
No 111
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=88.24 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=52.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+ ++|++||.|..+.++.++ .+ +|||||+|.+.++|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~--~~--rg~afV~f~~~~~A~~A 68 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT--DY--QLKAVVQMENLQDAIGA 68 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC--ST--TCCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC--CC--CeEEEEEECCHHHHHHH
Confidence 4467899999999999999999 999999999999999884 33 79999999999999865
No 112
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=92.07 Aligned_cols=56 Identities=25% Similarity=0.419 Sum_probs=50.4
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||++ +++++|+++|++||.|..+.++.. +|||||+|.+.++|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~A 78 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAM 78 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCHHHHHHH
Confidence 456789999999998 999999999999999999998654 59999999999998764
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=4.9e-18 Score=95.00 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=54.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCC--CcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG--LHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+++++++|+++|++||.|..+.++.++ .++ .++|||||+|.+.++|++|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A 63 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEA 63 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHH
Confidence 56899999999999999999999999999999999885 454 8999999999999998764
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=87.56 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=51.8
Q ss_pred ccCcccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 11 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 11 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+........++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-----~~~g~afV~f~~~~~a~~A 72 (97)
T 2e5j_A 10 SPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-----GPRRRAFLHYPDSAAAQQA 72 (97)
T ss_dssp CCCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-----TTTTEEEEECSSHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-----CCCcEEEEEECCHHHHHHH
Confidence 33344456678999999999999999999999999986 555443 5679999999999998764
No 115
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1.1e-17 Score=92.86 Aligned_cols=59 Identities=27% Similarity=0.576 Sum_probs=55.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a 60 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-ITGQSLGYGFVNYIDPKDAEKA 60 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCCcceeEEEEEECCHHHHHHH
Confidence 5799999999999999999999999999999999886 6899999999999999999864
No 116
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=90.45 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=55.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHH---HHhHhcCCeeEEEeecccCC---CCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVE---ELFKAFGELKFVRLPKKMVG---SGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+ ++|.+||.|..+.++.++ . ++.++|||||+|.+.++|++|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~-~~~~~~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST-SYAGSQGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS-SCCSSSCCCEEEEEEESSHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC-CcCccCCCCeEEEEEECcHHHHHHH
Confidence 344567899999999999999999 999999999999998875 3 335679999999999999865
No 117
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=86.51 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=50.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHH
Confidence 35789999999999999999999999999999998654 579999999999998754
No 118
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=8.6e-18 Score=93.56 Aligned_cols=60 Identities=23% Similarity=0.576 Sum_probs=55.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+++++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~a 61 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY-KTGYSYGYAFVDFTSEMDSQRA 61 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET-TTTEECSEEEEEESSHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC-CCCccceEEEEEECCHHHHHHH
Confidence 46899999999999999999999999999999999886 7899999999999999999764
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.3e-17 Score=88.59 Aligned_cols=59 Identities=20% Similarity=0.474 Sum_probs=52.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~----~~~~g~afV~f~~~~~A~~A 63 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNA 63 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCCcEEEEEECCHHHHHHH
Confidence 345789999999999999999999999999999999876 34589999999999998764
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=83.80 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=51.8
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a 64 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVA 64 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHH
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHH
Confidence 34556789999999999999999999999999999998765 59999999999998764
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=89.88 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~aFV~F~~~~~A~~A 88 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKAYIVFATQESAQAF 88 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEEEEEECCHHHHHHH
Confidence 4557899999999999999876 6999999999887743 467899999999999998765
No 122
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=87.26 Aligned_cols=59 Identities=20% Similarity=0.522 Sum_probs=51.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++|||+|||+.+++++|+++|.+||.| .++.+ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~--~~g~~~g~afV~f~~~~~A~~A 69 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN--QNGKSKGYAFIEFASFEDAKEA 69 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC--SSSCBCSEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC--CCCCEeeEEEEEECCHHHHHHH
Confidence 45568999999999999999999999999976 56665 5788999999999999999864
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=86.49 Aligned_cols=56 Identities=16% Similarity=0.472 Sum_probs=50.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~A 66 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYA 66 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999999999998764 8999999999998865
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-18 Score=91.28 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=51.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|.+||.|..+.+..+. .++.++|||||+|.+.++|++|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~A 83 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-MTGRMRGQAFITFPNKEIAWQA 83 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-ECSSSCSEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-CCCccceEEEEEECCHHHHHHH
Confidence 4457899999999999999999999999998544333332 4678899999999999998764
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-19 Score=91.20 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+++++++|+++|++||.|.. .++.++ .++.++|||||+|.+.++|++|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-~~g~~~g~afV~f~~~~~a~~A 74 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-RTGTNRKFGYVDFESAEDLEKA 74 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-EEETTTTEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-CCCCcCcEEEEEECCHHHHHHH
Confidence 345789999999999999999999999998877 555554 6788999999999999999865
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.9e-17 Score=94.17 Aligned_cols=60 Identities=33% Similarity=0.540 Sum_probs=55.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..|.++.+ .++.++|||||+|.+.++|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d--~~g~~kG~afV~F~~~~~A~~A 145 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD--RSGRSLGTADVHFERRADALKA 145 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC--TTSSCSCCEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCEeeEEEEEeCCHHHHHHH
Confidence 34689999999999999999999999999999999998 5888999999999999999864
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.3e-17 Score=88.77 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=51.1
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcC-CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|++|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~A 83 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEA 83 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHH
Confidence 345678999999999999999999999999 8999887543 3689999999999999865
No 128
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=85.07 Aligned_cols=58 Identities=12% Similarity=0.303 Sum_probs=51.1
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A 69 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAA 69 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHH
Confidence 34456789999999999999999999999999999988654 58999999999999864
No 129
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=2e-17 Score=95.17 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=54.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.++|||+|||+.+++++|+++|++||.|..++++.+ .++.++|||||+|.+.++|++|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~kG~aFVeF~~~e~A~~A 166 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT--LHKAFKGSIFVVFDSIESAKKF 166 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC--TTCCEEEEEEEEESSHHHHHHH
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC--CCCCcccEEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999998 5688999999999999999865
No 130
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1e-17 Score=86.65 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=52.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHH----HHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++|||+|||+.+++++|+ ++|++||.|..+.++. ++.++|||||+|.+.++|++|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~A 67 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNA 67 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHHH
Confidence 34567899999999999999999 9999999999998864 366789999999999998764
No 131
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.2e-17 Score=93.25 Aligned_cols=61 Identities=26% Similarity=0.559 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-CCCCccceEEEEECCHHHHHHH
Confidence 345899999999999999999999999999999999886 6899999999999999999864
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-19 Score=94.29 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=56.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeE--------EEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKF--------VRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|++||.|.. +.++.++ .++.++|||||+|.+.++|++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 73 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-ETGKLKGEATVSFDDPPSAKAA 73 (116)
Confidence 456789999999999999999999999999988 8888886 6789999999999999999875
No 133
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=4.5e-18 Score=98.00 Aligned_cols=61 Identities=23% Similarity=0.423 Sum_probs=54.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+++++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 86 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS-VTMKHKGFAFVEYEVPEAAQLA 86 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC--CC-CCCSEEEEEESSHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC-CCCccCceEEEEeCCHHHHHHH
Confidence 446899999999999999999999999999999999886 6889999999999999999864
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=85.56 Aligned_cols=58 Identities=28% Similarity=0.501 Sum_probs=51.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a 67 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIA 67 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHH
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHH
Confidence 33456789999999999999999999999999999998765 59999999999998764
No 135
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=4.8e-17 Score=90.93 Aligned_cols=61 Identities=25% Similarity=0.508 Sum_probs=55.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~--~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG--PDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC--TTSCEEEEEEEEESSHHHHHHH
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC--CCCCEEEEEEEEECCHHHHHHH
Confidence 345789999999999999999999999999999999988 5789999999999999999865
No 136
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.4e-17 Score=91.42 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=52.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
++|||+|||+++++++|+++|++||.|..+.++.+ ..+.++|||||+|.+.++|++|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~--~~~~~~g~afV~f~~~~~a~~A 57 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID--KNNKNVNYAFVEYHQSHDANIA 57 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC--CC-CCEEEEEEEESSHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC--CCCCCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999999999999999988 5688999999999999998764
No 137
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2e-17 Score=89.78 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=49.3
Q ss_pred CCeEEEeCC----CCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecC
Q psy3346 20 GSKILVRNI----PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 72 (79)
Q Consensus 20 ~~~l~v~nl----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~ 72 (79)
++.|||+|| |+.+++.+|+++|+.||+|.++.++.|+ .+|.++|||||+|.+
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp-~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP-NSALPLHVYLIKYAS 57 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT-TTCCEEEEEEEECC-
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCceeeEEEEEECC
Confidence 378999999 9999999999999999999999999999 999999999999996
No 138
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=4.1e-17 Score=103.28 Aligned_cols=61 Identities=18% Similarity=0.455 Sum_probs=56.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|.++|.+||.|..|.|+.++ .++.++|||||+|.+.++|++|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK-RSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC-CCCCccceEEEeeccHHHHHHH
Confidence 345799999999999999999999999999999999886 7899999999999999998865
No 139
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.1e-17 Score=89.27 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=57.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|.+|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A 145 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHH
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHH
Confidence 34567899999999999999999999999999999999886 7899999999999999999865
No 140
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=84.72 Aligned_cols=61 Identities=23% Similarity=0.446 Sum_probs=52.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+.+++++|+++|+.|+ .+.++.++ .++.++|||||+|.+.++|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~-~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR-ETGSSKGFGFVDFNSEEDAKAA 70 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS-SSCSEEEEEEEECSSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC-CCCCcCcEEEEEECCHHHHHHH
Confidence 4456689999999999999999999999774 56677765 6889999999999999999864
No 141
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4.4e-17 Score=83.34 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=48.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..-|||+||++.+++++|+++|.+||+|.++++... +|||||+|.+.++|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-------kGfaFVey~~~~eA~~A 59 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-------QGIALCKYTTREEANKA 59 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-------CcEEEEEECCHHHHHHH
Confidence 567999999999999999999999999999998653 69999999999999865
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=84.47 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=51.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A 77 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHA 77 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHH
Confidence 3456789999999999999999999999999999998775 59999999999998764
No 143
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.3e-16 Score=89.07 Aligned_cols=61 Identities=28% Similarity=0.573 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TTCSEEEEEEEEESSTTHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC-CCCCcceEEEEEeCCHHHHHHH
Confidence 446899999999999999999999999999999999886 6899999999999999998864
No 144
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=6e-17 Score=84.34 Aligned_cols=53 Identities=32% Similarity=0.540 Sum_probs=48.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A 53 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDA 53 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHH
Confidence 58999999999999999999999999999998764 579999999999999865
No 145
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=81.53 Aligned_cols=54 Identities=24% Similarity=0.500 Sum_probs=49.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A 58 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDA 58 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHH
Confidence 4567899999999999999999999999999999885 38999999999998764
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=86.46 Aligned_cols=55 Identities=33% Similarity=0.515 Sum_probs=49.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.. +|||||+|.+.++|++|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~A 62 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKA 62 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEeCCHHHHHHH
Confidence 34689999999999999999999999999999988654 58999999999999864
No 147
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=86.61 Aligned_cols=57 Identities=14% Similarity=0.331 Sum_probs=49.5
Q ss_pred cCCCCCeEEE--eCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILV--RNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+.++||| +||++.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~A 79 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRA 79 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHH
Confidence 3445688999 779999999999999999999999887543 59999999999999865
No 148
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=83.28 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||..+++++|+++|++||.|..+.+... +|||||+|.+.++|++|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-------~g~afV~f~~~~~A~~A 79 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-------KGCCFIKYDTHEQAAVC 79 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-------TTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-------CCEEEEEECCHHHHHHH
Confidence 345789999999999999999999999999999988643 59999999999998764
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=9.8e-17 Score=88.74 Aligned_cols=59 Identities=27% Similarity=0.446 Sum_probs=52.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..++++.+ ++|||||+|.+.++|++|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A 126 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADA 126 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHH
Confidence 33456789999999999999999999999999999998775 479999999999998764
No 150
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=5.5e-17 Score=90.28 Aligned_cols=60 Identities=32% Similarity=0.527 Sum_probs=55.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK-DTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS-SSSTTSEEEEEEESSHHHHHHH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC-CCCccceEEEEEECCHHHHHHH
Confidence 45789999999999999999999999999999999886 6899999999999999999864
No 151
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=7.7e-17 Score=85.20 Aligned_cols=57 Identities=32% Similarity=0.660 Sum_probs=49.6
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 14 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.......++|||+|||+.+++++|+++|++||.|..+.++ +|||||+|.+.++|++|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~A 81 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKA 81 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHH
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHH
Confidence 3445668999999999999999999999999999999886 49999999999999864
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.4e-16 Score=87.45 Aligned_cols=62 Identities=27% Similarity=0.515 Sum_probs=56.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||..+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|.+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ-VTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC-CCCCccceEEEEeCCHHHHHHH
Confidence 3457899999999999999999999999999999998886 6888999999999999999865
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=5.1e-17 Score=86.66 Aligned_cols=55 Identities=16% Similarity=0.474 Sum_probs=47.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~A 67 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYA 67 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHH
Confidence 356789999999999999999999999999999988654 9999999999999865
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2.7e-16 Score=87.44 Aligned_cols=62 Identities=19% Similarity=0.438 Sum_probs=56.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||..+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|.+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A 147 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK-LTGRPRGVAFVRYNKREEAQEA 147 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC-CCCCcceEEEEEECCHHHHHHH
Confidence 3457899999999999999999999999999999998885 6899999999999999999865
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=2e-16 Score=91.03 Aligned_cols=61 Identities=23% Similarity=0.560 Sum_probs=56.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||..+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|.+|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP-TTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC-CCCCcCceEEEEecCHHHHHHH
Confidence 456899999999999999999999999999999999886 7899999999999999999765
No 156
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-17 Score=84.58 Aligned_cols=57 Identities=23% Similarity=0.556 Sum_probs=50.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+ . .++.++|||||+|.+.++|++|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~--~~~~~~g~afV~f~~~~~a~~A 69 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S--QDGKSKGIAYIEFKSEADAEKN 69 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E--ETTEEEEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C--CCCCcceEEEEEECCHHHHHHH
Confidence 4457899999999999999999999999977655 3 5788999999999999999864
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2.7e-16 Score=89.51 Aligned_cols=61 Identities=28% Similarity=0.593 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.++ .++.++|||||+|.+.++|++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~afV~f~~~~~a~~A 172 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQA 172 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT-TTCSEEEEEEEEESSSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC-CCCCcceEEEEEECCHHHHHHH
Confidence 567899999999999999999999999999999999886 6899999999999999998764
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.6e-16 Score=80.14 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=47.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..| +.++ .++. ||||+|.+.++|++|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~-~~g~---~afV~f~~~~~a~~a 61 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDK-DKGV---FAIVEMGDVGAREAV 61 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECS-SSCC---EEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcC-CCCc---EEEEEECCHHHHHHH
Confidence 356799999999999999999999999999987 4443 3444 999999999998764
No 159
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=4.3e-16 Score=80.85 Aligned_cols=56 Identities=16% Similarity=0.532 Sum_probs=49.0
Q ss_pred ccCCCCCeEEEeCCCC-CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHH
Confidence 4456689999999998 99999999999999999999872 58999999999999764
No 160
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=3.3e-16 Score=79.40 Aligned_cols=55 Identities=25% Similarity=0.552 Sum_probs=49.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhc----C-------CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAF----G-------ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHH
Confidence 357899999999999999999999999 8 8998887654 59999999999999865
No 161
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=3e-16 Score=81.14 Aligned_cols=54 Identities=17% Similarity=0.543 Sum_probs=47.8
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A 61 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDA 61 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHH
Confidence 45688999999999 99999999999999999999873 48999999999998764
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=80.51 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=49.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEE-EeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFV-RLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|.+||.|..+ .++.++ .+ |.|||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~----~~afV~f~~~~~a~~A 70 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ET----AVVNVTYSSKDQARQA 70 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SS----EEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CC----CEEEEEECCHHHHHHH
Confidence 34457899999999999999999999999999999 477764 23 3399999999998764
No 163
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=6e-16 Score=81.70 Aligned_cols=53 Identities=25% Similarity=0.596 Sum_probs=47.8
Q ss_pred CCCCeEEEeCCCCC-CCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A 78 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAA 78 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHH
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHH
Confidence 34589999999999 999999999999999999987 359999999999998764
No 164
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=79.19 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=49.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
......++|||+|||+.+++++|+++|++||.|..+.++. +||||+|.+.++|++|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~afV~f~~~~~a~~A 60 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------DYAFVHMERAEDAVEA 60 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---------SEEEEEESCHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---------CEEEEEECCHHHHHHH
Confidence 3455678999999999999999999999999999998752 4999999999998764
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=86.21 Aligned_cols=62 Identities=15% Similarity=0.336 Sum_probs=50.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEE--eecc---cCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVR--LPKK---MVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~--~~~~---~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+. ++.+ . .++.++|||||+|.+.++|++|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~A 108 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKA 108 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHH
Confidence 45678999999999999999999999999987641 1111 1 3678899999999999998865
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=78.63 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=48.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+.++. +||||+|.+.++|++|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---------~~afV~f~~~~~a~~A 59 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---------DYAFVHMEKEADAKAA 59 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---------SCEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---------CEEEEEECCHHHHHHH
Confidence 45678999999999999999999999999999998752 4999999999998764
No 167
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=8.6e-16 Score=80.27 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.++|||+|||+.+++++|+++|.+||.|..+.++ ++||||+|.+.++|++|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A 61 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKA 61 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHH
Confidence 3457899999999999999999999999999999874 36999999999999864
No 168
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=4.7e-16 Score=93.29 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=51.3
Q ss_pred CcccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 13 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
........++|||+|||+.+++++|+++|++||.|..+.++.++ .+ ++|||||+|.+.++|++|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~-~~g~afV~f~~~~~A~~A 97 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL--KK-NFRFARIEFARYDGALAA 97 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT--TS-SSEEEEEEESSHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CC-CcEEEEEEECCHHHHHHH
Confidence 34445668999999999999999999999999999999998873 33 479999999999999865
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=7.8e-16 Score=86.61 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=49.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+|||+||++.+++++|+++|++||.|.++.+..+ .++|||||+|.+.++|++|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~A 100 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHA 100 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHH
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHH
Confidence 34567999999999999999999999999999998643 2468999999999998764
No 170
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=78.22 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=48.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhc--CCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAF--GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+++|++| |.|..+.++ +|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A 67 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEA 67 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHH
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHH
Confidence 34567899999999999999999999999 888887653 47999999999998764
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=1e-15 Score=88.69 Aligned_cols=58 Identities=24% Similarity=0.449 Sum_probs=52.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...+|||+|||+.+++++|+++|++||.|..++++.++ +.++|||||+|.+.++|++|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE---NGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---TEEEEEEEEEESSHHHHHHH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC---CCCceEEEEEeCCHHHHHHH
Confidence 45789999999999999999999999999999998873 45789999999999999875
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.2e-15 Score=90.75 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=55.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHH
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHH
Confidence 35689999999999999999999999999999999998 6899999999999999999765
No 173
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=79.88 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=46.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCC-eeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGE-LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|++|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--------~~g~afV~f~~~~~A~~A 60 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--------KSGYAFVDYPDQNWAIRA 60 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--------ETTEEEECCSCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--------CCCEEEEEECCHHHHHHH
Confidence 446789999999999999999999999998 5555542 359999999999998764
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.2e-15 Score=88.30 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=50.6
Q ss_pred CCCCeEEEeCCC-CCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIP-FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+||| +.+++++|+++|++||.|.+++++.+ .+|||||+|.+.++|++|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~A 58 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRA 58 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHH
Confidence 357899999999 89999999999999999999998765 269999999999999865
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.2e-15 Score=90.03 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=53.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHH----HHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVE----ELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|++|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A 68 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNA 68 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHH
Confidence 45668999999999999999976 8999999999998765 467889999999999999865
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=3.6e-15 Score=89.15 Aligned_cols=61 Identities=33% Similarity=0.557 Sum_probs=56.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|||+|||+.+++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|.+|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A 153 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE-RTGQSKGYGFAEYMKKDSAARA 153 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC-CCCccceEEEEEECCHHHHHHH
Confidence 456899999999999999999999999999999998886 7899999999999999998764
No 177
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=76.77 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=47.9
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|| .+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~a~~A 65 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-------PRNCAFVTYEKMESADQA 65 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-------TTTEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-------CCCEEEEEECCHHHHHHH
Confidence 3456789999995 899999999999999999998843 469999999999998865
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=2.7e-15 Score=87.70 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=52.6
Q ss_pred ccCCCCCeEEEeCCCC-CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+ .+++++|+++|++||.|..+.++.++ +|||||+|.+.++|++|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~------~g~afV~F~~~~~A~~A 88 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLA 88 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT------SCCEEEEESCHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC------CCEEEEEECCHHHHHHH
Confidence 3445678999999999 99999999999999999999998872 68999999999999864
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=3.2e-15 Score=81.39 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=48.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceE-EEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF-GFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a 79 (79)
..-..|||+||++.+++++|+++|++||.|.++.+... .+|+ |||+|.+.++|++|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~A 82 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHA 82 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHH
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHH
Confidence 44567899999999999999999999999999988654 2577 99999999999865
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.3e-15 Score=87.19 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=51.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCe--eEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGEL--KFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+++++++|+++|++||.| ..+++..+ . +..+|+|||+|.+.++|.+|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~--~-~~~~g~gfV~f~~~~~A~~A 181 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG--K-SERSSSGLLEWDSKSDALET 181 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC--C-SSSSEEEEEECSSHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC--C-CCCceEEEEEeCCHHHHHHH
Confidence 45789999999999999999999999998 88888776 3 55679999999999999765
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=5.4e-15 Score=88.38 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=56.1
Q ss_pred cCCCCCeEEEeCCCCCC-CHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQA-KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|||+|||+.+ ++++|+++|++||.|..+.++.+ .+|.++|+|||+|.+.++|.+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A 242 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG--QDGQLKGFAVLEYETAEMAEEA 242 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC--SSCCEEEEEEEECSSHHHHHHH
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC--CCCCcccEEEEEeCCHHHHHHH
Confidence 34567899999999995 99999999999999999999988 6889999999999999999865
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=7.6e-15 Score=79.40 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=45.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceE-EEEEecCHHHHhcC
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF-GFVEFITKNEAKRV 79 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a 79 (79)
..|||+||++.+++++|+++|++||.|..+.+... .|| |||+|.+.++|+.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A 78 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKA 78 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHH
Confidence 35789999999999999999999999999988542 276 99999999998765
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=2.3e-15 Score=76.68 Aligned_cols=53 Identities=28% Similarity=0.538 Sum_probs=47.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+.+++++|+++|++| .|..+.+. +++|||||+|.+.++|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~A 56 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNA 56 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHH
Confidence 56899999999999999999999999 89998874 3579999999999998764
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=4.1e-16 Score=87.46 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=52.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|.+||.+..+ ++.+. .++.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~-~~~~~~g~afV~f~~~~~a~~A 70 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDV-RTGTNRKFGYVDFESAEDLEKA 70 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEE-EEETTTTEEEEEESSHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEEC-CCCccccEEEEEECCHHHHHHH
Confidence 345678999999999999999999999999876653 33333 5788899999999999999865
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=6.8e-15 Score=88.23 Aligned_cols=62 Identities=23% Similarity=0.486 Sum_probs=54.7
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHhHhcCCeeEEEeecccCC-CCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVG-SGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+. +++++|+++|++||.|..+.++.+. . +|.++|||||+|.+.++|.+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ-KEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC-C---CCCEEEEEEESSHHHHHHH
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC-CcCCCCceEEEEEeCCHHHHHHH
Confidence 445789999999999 9999999999999999999999884 3 489999999999999999865
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=6.3e-15 Score=87.61 Aligned_cols=58 Identities=24% Similarity=0.508 Sum_probs=50.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~A~~A 74 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------RGFGFIRLESRTLAEIA 74 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------TTEEEEECSSHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CcEEEEEECCHHHHHHH
Confidence 33455689999999999999999999999999999988654 59999999999998764
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=7.5e-15 Score=86.93 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=50.3
Q ss_pred CCCCCeEEEeCCCCCC---------CHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQA---------KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||..+ ++++|+++|++||.|..|+++.. +|||||+|.+.++|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A 195 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFA 195 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHH
Confidence 4567899999999998 79999999999999999998765 59999999999999865
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=9.7e-15 Score=81.82 Aligned_cols=57 Identities=23% Similarity=0.556 Sum_probs=50.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||+.+++++|+++|++||.|..+ . .++.++|||||+|.+.++|.+|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~--~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S--QDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----C--SSSSCCSEEEEECSSHHHHHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----c--CCCCCceEEEEEECCHHHHHHH
Confidence 3456899999999999999999999999987665 3 6788999999999999999865
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=83.54 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=50.0
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPF-QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+ .+++++|+++|++||.|..+.++.++ +|||||+|.+.++|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~------~g~afV~f~~~~~a~~A 57 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLA 57 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC------SSCCEEECTTTHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC------CCEEEEEECCHHHHHHH
Confidence 368999999999 99999999999999999999998772 68999999999998764
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=8.3e-14 Score=73.30 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=51.2
Q ss_pred CCCCeEEEeCCCC-----CCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPF-----QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
...++|+|.||.. +-++++|++.|++||.|.++.++.++..++.++|+|||+|.+.++|++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~A 72 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKA 72 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHH
Confidence 4578999999963 2368999999999999999999887413467899999999999999865
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=5.2e-14 Score=84.04 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=50.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|||..+++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~------~g~afV~f~~~~~A~~A 260 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR------HDIAFVEFDNEVQAGAA 260 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC------CcEEEEEeCCHHHHHHH
Confidence 3456899999999999999999999999999999998662 58999999999999865
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=3.3e-14 Score=76.46 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=47.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|||+|| .+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-------~kg~aFV~f~~~~~A~~A 89 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-------PRNCAFVTYEKMESADQA 89 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-------TTTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-------CCCEEEEEECCHHHHHHH
Confidence 346789999995 699999999999999999998853 469999999999998765
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=4.7e-14 Score=78.67 Aligned_cols=54 Identities=26% Similarity=0.568 Sum_probs=46.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhc----C-------CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAF----G-------ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|||+|||+++++++|+++|++| | .|..+.+.. ++|||||+|.+.++|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-------~~g~afV~f~~~~~A~~A 67 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQA 67 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-------TTTEEEEEESSHHHHHHH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-------CCCEEEEEeCCHHHHHHH
Confidence 46899999999999999999999999 6 566665433 469999999999999865
No 194
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.49 E-value=6.8e-14 Score=86.45 Aligned_cols=56 Identities=16% Similarity=0.361 Sum_probs=48.7
Q ss_pred CCCCCeEEEeC--CCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRN--IPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+..+|||+| |++.+++++|+++|++||.|..+.++. ++|||||+|.+.++|++|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-------~kgfaFV~f~~~~~A~~A 72 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYSFARYRTTEESKRA 72 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-------TCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-------CCCEEEEEECCHHHHHHH
Confidence 45568999999 588999999999999999999987743 359999999999999875
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1.4e-13 Score=78.17 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=44.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcC-----------CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFG-----------ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-----------~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+++++++|+++|++|| .|..+.+ +.++|||||+|.+.++|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~A 67 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQA 67 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHH
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHH
Confidence 468999999999999999999999994 4444443 44579999999999999865
No 196
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-13 Score=69.77 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=42.1
Q ss_pred CCCeEEEeCCCCCCCHHH----HHHHhHhcC-CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSE----VEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+.|||+|||+.+++++ |+++|++|| .|..| ++ |+|||.|.+.++|++|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A 62 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERA 62 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHH
Confidence 344599999999999987 558999995 98886 23 9999999999999875
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=78.04 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=49.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcC-CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.++|||+|||..+++++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|.+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A 174 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQA 174 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHH
Confidence 3478999999999999999999999999 9999988654 268999999999999865
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=2.9e-13 Score=79.07 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=49.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcC-CeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFG-ELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..++|||+|||+.+++++|+++|++|| .|..+.+..+ .+|||||+|.+.++|.+|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~A 205 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQA 205 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHH
Confidence 468999999999999999999999999 9999988553 258999999999999864
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=1.2e-13 Score=72.59 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred EeCCCCCCCHHHHHHHh------------HhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 25 VRNIPFQAKQSEVEELF------------KAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.|||+.+++++|++.| ++||.|.++.++.+ ..++++|||||+|.+.++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~--~~~~~~G~~fV~f~~~~~A~~A 84 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN--LGDHLVGNVYVKFRREEDAEKA 84 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS--SSSSSEEEEEEEESCHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC--CCCCccEEEEEEECCHHHHHHH
Confidence 45677777777776666 99999999999988 4688999999999999999865
No 200
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-12 Score=68.13 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=47.2
Q ss_pred cCCCCCeEEEeCCCCCCC-----------HHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 16 AKQTGSKILVRNIPFQAK-----------QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 16 ~~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.....++|+|.||..... +++|+++|++||.|..+.+ .++ .++|||||+|.+.++|++|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~----~~~G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR----HPDGVASVSFRDPEEADYC 80 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT----CTTCEEEEECSCHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC----CCCEEEEEEECCHHHHHHH
Confidence 345678999999944432 5799999999999999965 442 2789999999999999865
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.4e-12 Score=65.36 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=43.7
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 20 GSKILVRNIP-------FQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 20 ~~~l~v~nl~-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
..+|.|.-.. ..+++++|+++|++||.|..+.++. .++|||||+|.+.++|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~------~~rGfaFVeF~~~~~A~~A 70 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS------KKPGTAVVEFATVKAAELA 70 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES------SSSSEEEEEESCHHHHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc------CCCCEEEEEECCHHHHHHH
Confidence 4456665433 4589999999999999999998863 4679999999999998764
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=7.5e-12 Score=65.75 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=48.4
Q ss_pred CCCeEEEeCC--CCCCC--------HHHHHHHhHhcCCeeEEEeecccCCC--CCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNI--PFQAK--------QSEVEELFKAFGELKFVRLPKKMVGS--GLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a 79 (79)
+.+.|.+.|+ |.... +++|++.|++||.|.++.++.++ .+ +.++|++||+|.+.++|.+|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~-~~~~~~~~G~~fV~f~~~~~A~~A 75 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV-DGVEVPGCGKIFVEFTSVFDCQKA 75 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCB-TTBCCTTTTEEEEEESSHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccC-CCCCcCCcEEEEEEECCHHHHHHH
Confidence 4678889997 33333 36899999999999999998875 33 36789999999999999875
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.6e-11 Score=66.01 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=49.3
Q ss_pred ccCCCCCeEEEeCCCCC-CCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecC-HHHHhc
Q psy3346 15 VAKQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT-KNEAKR 78 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~ 78 (79)
-.-..++.|||+||++. ++.++|+++|++||.|.+|.+..+. ..|||.|.+ .++|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-------~tgfVrf~~~~~~A~~ 71 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-------KEGIILFKEKAKEALG 71 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-------SEEEEEESSCHHHHHH
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------CEEEEEECCChHHHHH
Confidence 44567899999999999 9999999999999999999998874 249999999 666654
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.24 E-value=1.9e-11 Score=65.49 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=49.4
Q ss_pred CCCeEEEeCCCC--CC---CHHHHHHHhHhcCCeeEEEeecccC---CCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPF--QA---KQSEVEELFKAFGELKFVRLPKKMV---GSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.++|++.|+-. ++ -+++|++.|++||.|.++.++.++. .++.++|++||+|.+.++|.+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~A 87 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA 87 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHH
Confidence 578999999832 22 3588999999999999999988741 1456789999999999999875
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.91 E-value=5.6e-09 Score=55.52 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=44.0
Q ss_pred CCCCeEEEeCCCCCCC----------HHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 18 QTGSKILVRNIPFQAK----------QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+.+.|.+.|+=..-. +++|++.|++||.|.++.+..+. .+|++||+|.+.++|++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-----~~G~~fV~f~~~e~A~~A 71 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-----AQGNVYVKCPSIAAAIAA 71 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-----TTCCEEEECSSHHHHHHH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-----CcEEEEEEECCHHHHHHH
Confidence 3466788888733211 25789999999999999886652 489999999999999865
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1.7e-07 Score=54.28 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=39.2
Q ss_pred CHHHHHHHhHhcCCeeEEEeeccc---CCCCCcceEEEEEecCHHHHhcC
Q psy3346 33 KQSEVEELFKAFGELKFVRLPKKM---VGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 33 ~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+++|.+.|++||.|.++.++.+. ..++.++|++||+|.+.++|++|
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a 191 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA 191 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHH
Confidence 457899999999999999987543 14558899999999999998865
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=6.5e-07 Score=45.75 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=42.3
Q ss_pred CCCCCeEEEeCCCC----CCCH----HHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPF----QAKQ----SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+++-||+|...+. +.-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---------~fVtF~d~~sAlaA 65 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---------MWVTFLEGSSALNV 65 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---------EEEEESSHHHHHHG
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---------EEEEECChHHHHHH
Confidence 34567888887662 2333 5789999999999999998872 89999999998765
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=7.4e-06 Score=43.21 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=49.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhc-----CCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAF-----GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....++|-+-|||-.+++..++.+.+++ |.+..+.+..+. +-|+|+|.+...|-+|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-------~GAivef~d~~~AgKa 78 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-------NGAIIIFRDSKFAAKM 78 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-------TEEEEECSCHHHHHHH
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-------CceEEEEccchhhHHH
Confidence 4458899999999999999999999999 999999998873 6699999999888654
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=3.1e-06 Score=43.49 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCCCCeEEEeCCCCC-----C-CH---HHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQ-----A-KQ---SEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~-----~-~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
.+++-||+|..++.. . .+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---------~fVtF~d~~sAl~A 74 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---------MLVTFADSHSALSV 74 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---------EEEECSCSHHHHHH
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---------EEEEEcChHHHHHH
Confidence 456789999888743 2 21 4688999999999999998872 99999999998764
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.96 E-value=2.3e-05 Score=40.46 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=40.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
....+++ ++|.+....+|.++|++||. -.|+++.| --|||.|.+++.|..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD--------TsAlvvf~~~~~a~~ 64 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--------TSAFVSLSQPEQVQI 64 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET--------TEEEEECSCHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC--------CeEEEEecCHHHHHH
Confidence 3455666 99999999999999999994 46677776 469999999998764
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.92 E-value=8.2e-05 Score=37.97 Aligned_cols=56 Identities=14% Similarity=0.289 Sum_probs=43.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCC--cceEEEEEecCHHHHh
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL--HRGFGFVEFITKNEAK 77 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~ 77 (79)
++|-|++||+..+++++.+.+.....+....+...+ .+.+ .-+-|||.|.+.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~-~s~~~~~~SRaYi~f~~~e~v~ 59 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSND-TSLYPHMYARAYINFKNQEDII 59 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESC-CSSTTCCCEEEEEEESSSHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCc-cCCCCCcceEEEEEeCCHHHHH
Confidence 578999999999999999999988877776665543 2222 2356999999988754
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.77 E-value=3.3e-05 Score=39.98 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=39.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 22 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
.+++ ++|.+....+|.++|++|| .-.|.++.| --|||.|.+++.|..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD--------TsAlvvf~~~~~a~~ 54 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD--------TSAFVSLSQPEQVKI 54 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET--------TEEEEEEEEECHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC--------CeEEEEecCHHHHHH
Confidence 4555 9999999999999999999 557778777 469999999888754
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.00032 Score=36.50 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=41.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHh---c--CCeeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKA---F--GELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
....+|.|.|||+.+.++.|.-+|+. - |.|..+.... +-|+|+|.+.+.|++
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~r 62 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAER 62 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHH
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHH
Confidence 35789999999999999999999976 2 4677765422 458999999998865
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.54 E-value=5.2e-05 Score=48.71 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=39.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
..+.|+|. .|..+++.+|.++|++||.|.++.+-.++ .-|+.|+|.+.+++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~------g~~~~vef~~~~~~~~ 104 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF------GLYAVVEFCQKESIGS 104 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS------SEEEEEECC---CCHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC------CeEEEEEeCCHHHHHH
Confidence 35899997 79999999999999999999998876552 2699999999887653
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.30 E-value=0.00028 Score=36.34 Aligned_cols=58 Identities=9% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCC-cceEEEEEecCHHHHh
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL-HRGFGFVEFITKNEAK 77 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~ 77 (79)
.-+|-|+.||+..|++++.+.+.+.-.+....+...+...+. .-.-|||.|.+.++..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~ 67 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 67 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 457899999999999998888876655544433333211111 2256899999998754
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.02 E-value=0.0023 Score=34.10 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=43.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
....+-|.|-+.|+.. ...+...|++||.|.+..... ...+-+|.|.++.+|++|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-------~~NWihI~Y~s~~~A~rA 75 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-------TGNWMHIRYQSKLQARKA 75 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-------SSSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-------CCCeEEEEeCCHHHHHHH
Confidence 3456788888999985 566788899999998876522 236899999999999875
No 217
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.29 E-value=0.0071 Score=31.47 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCCCC-C----HHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQA-K----QSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~-~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
-+++|+|.||+.++ . .+.++.+|..|+.+....+... -.-..|.|.++++|.+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~A 62 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADA 62 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHH
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHH
Confidence 36789999998876 2 2567899999998777655443 12357899999988754
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.27 E-value=0.0033 Score=34.25 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=20.4
Q ss_pred EEeecccCCCCCcceEEEEEecCHHHHhcC
Q psy3346 50 VRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 50 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 79 (79)
+.+..+. ..++|||||+|.+.++|++|
T Consensus 3 ~kl~ln~---~~~~G~~fV~f~~~~~A~~a 29 (158)
T 2kn4_A 3 YKLILNG---KTLKGETTTEAVDAATAEKV 29 (158)
T ss_dssp EEEEEEC---SSCEEEEEEECSSHHHHHHH
T ss_pred EEEEecC---ccccchhHHHHHHHHhHHHH
Confidence 3455542 36889999999999999764
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.56 E-value=0.12 Score=33.57 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
...++++ +|..+...+|.+.|+.||. ..|+++.+ ..|||.|.+.+.|..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd--------t~a~V~~~~~~~a~~ 488 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD--------TSAFVSLSQPEQVQI 488 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS--------SEEEEECSCHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC--------CeEEEEECCHHHHHH
Confidence 3455555 8999999999999999995 46666655 459999999998753
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=92.99 E-value=0.021 Score=29.60 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCCCCHHH
Q psy3346 18 QTGSKILVRNIPFQAKQSE 36 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~ 36 (79)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999998763
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.64 E-value=0.14 Score=27.74 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhHhcCCeeE-EEeecc-----------cCCCC-CcceEEEEEecCHHHHhcC
Q psy3346 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKF-VRLPKK-----------MVGSG-LHRGFGFVEFITKNEAKRV 79 (79)
Q Consensus 19 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~~-----------~~~~~-~~~g~~fv~f~~~~~a~~a 79 (79)
....|.|-+.|++.+. .+...|++||.|.. .....+ +.... ....|-.|+|.++.+|++|
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA 78 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA 78 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH
Confidence 4456777788777554 56677999998865 222110 00011 1346889999999999875
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=79.08 E-value=6.6 Score=22.13 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCeEEEeCCCCC---------CCHHHHHHHh--HhcCCeeEEEeecccCCCCCcceEEEEEecCH
Q psy3346 20 GSKILVRNIPFQ---------AKQSEVEELF--KAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 73 (79)
Q Consensus 20 ~~~l~v~nl~~~---------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~ 73 (79)
+..+.|.|+|.. .+...|++.| ..|.++.-..+ .+ ...+.|++.|.|.+-
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~---~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WN---YLGHSGTAIVEFNKD 72 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-EC---SSBEEEEEEEECCSS
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-cc---CCCCceeEEEEecCC
Confidence 356677888872 3447888867 88987654433 33 134779999999764
No 223
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=70.53 E-value=7.6 Score=23.13 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeec
Q psy3346 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPK 54 (79)
Q Consensus 20 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~ 54 (79)
...+.|+|||+.++...+..++.. ..+....++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356789999999999999999977 6666665543
No 224
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=61.91 E-value=4.4 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=26.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeec
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPK 54 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~ 54 (79)
....|+|||+.++...|..++.....+....++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999997655566655543
No 225
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=56.50 E-value=11 Score=21.92 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=23.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEe
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRL 52 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~ 52 (79)
..+.|+|+|+.++...+..++.....+....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 34789999999999988888876443444433
No 226
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=54.94 E-value=14 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=22.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhHhcCCeeEEE
Q psy3346 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVR 51 (79)
Q Consensus 21 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~ 51 (79)
..+.|+|+|+.++...+..++.....+....
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 3578999999999888887776433344443
No 227
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=53.61 E-value=4.7 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.9
Q ss_pred EEEeCCCCCCCHHHHHHHhHhcCCeeEEEeec
Q psy3346 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPK 54 (79)
Q Consensus 23 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~ 54 (79)
..|+|||+.++...|..++...+.+....++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 47999999999999999998766666655543
No 228
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=52.14 E-value=19 Score=22.41 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=18.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhHh
Q psy3346 22 KILVRNIPFQAKQSEVEELFKA 43 (79)
Q Consensus 22 ~l~v~nl~~~~~~~~l~~~f~~ 43 (79)
...|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999888887764
No 229
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=49.63 E-value=8.3 Score=19.64 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhHh-cCCeeE-EEe--ecccCCCCCcceEEEEEecCHHHHh
Q psy3346 30 FQAKQSEVEELFKA-FGELKF-VRL--PKKMVGSGLHRGFGFVEFITKNEAK 77 (79)
Q Consensus 30 ~~~~~~~l~~~f~~-~g~i~~-~~~--~~~~~~~~~~~g~~fv~f~~~~~a~ 77 (79)
.+.+..++++.+.. |+.-.. +.+ ....-..|++.|||.| |.+.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 45678888877754 332111 111 1221134667788877 77777664
No 230
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=41.48 E-value=33 Score=16.98 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=16.2
Q ss_pred CeeEEEeecccCCCCCcceEEEEEecC
Q psy3346 46 ELKFVRLPKKMVGSGLHRGFGFVEFIT 72 (79)
Q Consensus 46 ~i~~~~~~~~~~~~~~~~g~~fv~f~~ 72 (79)
.|..+++..-. ..|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~-~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQ-TDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECC-SSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcC-CCCCEEEEEEEEECC
Confidence 35566553332 467778888888764
No 231
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=39.11 E-value=40 Score=17.18 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhHh-cCC---eeEEEeecccCCCCCcceEEEEEecCHHHHh
Q psy3346 30 FQAKQSEVEELFKA-FGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77 (79)
Q Consensus 30 ~~~~~~~l~~~f~~-~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 77 (79)
.+.+..+|++.+.. |+. +..+.=....-..|++.|||.| |.+.+.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~ak 78 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMK 78 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 56788888888854 442 2222212221145667788877 88877764
No 232
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=38.75 E-value=40 Score=17.16 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=16.3
Q ss_pred CeeEEEeecccCCCCCcceEEEEEecC
Q psy3346 46 ELKFVRLPKKMVGSGLHRGFGFVEFIT 72 (79)
Q Consensus 46 ~i~~~~~~~~~~~~~~~~g~~fv~f~~ 72 (79)
.|..+++..-. ..|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~-~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVN-TDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECC-SSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcC-CCCCEEEEEEEEECC
Confidence 35566653332 457778888888764
No 233
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=38.72 E-value=33 Score=16.76 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.3
Q ss_pred eCCCCCCCHHHHHHHhHhcC
Q psy3346 26 RNIPFQAKQSEVEELFKAFG 45 (79)
Q Consensus 26 ~nl~~~~~~~~l~~~f~~~g 45 (79)
|.|+..+++++|.+++.+..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 56888999999999998864
No 234
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=38.70 E-value=32 Score=15.99 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=15.7
Q ss_pred eEEEeecccCCCCCcceEEEEEecC
Q psy3346 48 KFVRLPKKMVGSGLHRGFGFVEFIT 72 (79)
Q Consensus 48 ~~~~~~~~~~~~~~~~g~~fv~f~~ 72 (79)
...+++.++ .....|++++.|++
T Consensus 20 R~arlllnr--Rps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNR--RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTB--CCSSTTEEEEEETT
T ss_pred hhhhhhhcc--CCCcCceEEEEEec
Confidence 345566653 44567999999976
No 235
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=37.86 E-value=40 Score=16.78 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhc
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 44 (79)
..-+.+..+.+.+.|..++.++..+++..|
T Consensus 14 s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 14 TTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp --CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 345667889999999999999999999887
No 236
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.19 E-value=4.8 Score=21.91 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=6.7
Q ss_pred ceEEEEEec
Q psy3346 63 RGFGFVEFI 71 (79)
Q Consensus 63 ~g~~fv~f~ 71 (79)
+||+||.-.
T Consensus 21 kGfGFI~~~ 29 (148)
T 3ts2_A 21 MGFGFLSMT 29 (148)
T ss_dssp TTEEEEEEE
T ss_pred CCeeEEeeC
Confidence 588888754
No 237
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.00 E-value=47 Score=17.10 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=15.7
Q ss_pred eeEEEeecccCCCCCcceEEEEEecC
Q psy3346 47 LKFVRLPKKMVGSGLHRGFGFVEFIT 72 (79)
Q Consensus 47 i~~~~~~~~~~~~~~~~g~~fv~f~~ 72 (79)
|..+++..-. ..|+-++||-|+|.+
T Consensus 6 iTdVri~~i~-~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 6 VTDVRLRKIQ-TDGRMKALVSITLDE 30 (105)
T ss_dssp EEEEEEEECC-SCSSEEEEEEEEETT
T ss_pred EEEEEEEEeC-CCCCEEEEEEEEECC
Confidence 5555553332 467778888888764
No 238
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=35.16 E-value=22 Score=13.06 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=8.7
Q ss_pred HHHHHHHhHhcC
Q psy3346 34 QSEVEELFKAFG 45 (79)
Q Consensus 34 ~~~l~~~f~~~g 45 (79)
..+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 456788887776
No 239
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=34.20 E-value=17 Score=17.29 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.0
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 36999997543
No 240
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=34.01 E-value=50 Score=16.85 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhHh-cCC---eeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 30 FQAKQSEVEELFKA-FGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 30 ~~~~~~~l~~~f~~-~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
.+.+..+|++.+.. |+. ...+.=....-..|++.|||.| |.+.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888888854 442 2222212221145667788877 888877653
No 241
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=32.96 E-value=54 Score=16.88 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhHh-cCC---eeEEEeecccCCCCCcceEEEEEecCHHHHh
Q psy3346 30 FQAKQSEVEELFKA-FGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77 (79)
Q Consensus 30 ~~~~~~~l~~~f~~-~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 77 (79)
.+.+..+|++.+.. ++. ...+.=....-..|++.|||.| |.+.+.|.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 87 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRML 87 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 46678888887754 442 1122112221145677888877 88887765
No 242
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=32.56 E-value=23 Score=18.70 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=35.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhHhcCCeeEEEeecccCCCCCcceEEEEEecCHH
Q psy3346 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 74 (79)
Q Consensus 18 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~ 74 (79)
.++....+-..|++..+..|-..+.+.|-- +. ...+++|.-||.|..++
T Consensus 11 ~~g~p~l~l~~~fdraW~rvg~ALdr~Gf~-----V~---Drdrs~G~y~V~Y~~~~ 59 (127)
T 2yh5_A 11 DTGLPMLVVRGPFNVVWQRLPAALEKVGMK-----VT---DSTRSQGNMAVTYKPLS 59 (127)
T ss_dssp TTSCEEEEEESCHHHHHHHHHHHHHHTTEE-----EE---EEEGGGTEEEEEECCCC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-----EE---eeeccCeEEEEEeCCCC
Confidence 455677777899999999999999998821 11 22456799999998664
No 243
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=32.55 E-value=42 Score=16.61 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=24.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHhHhcCC
Q psy3346 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGE 46 (79)
Q Consensus 15 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 46 (79)
...-.+.+++|.+... .+..+|.++...+|.
T Consensus 13 ~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg 43 (107)
T 3l3e_A 13 PKPLHKVVVCVSKKLS-KKQSELNGIAASLGA 43 (107)
T ss_dssp -CTTTTCEEEECGGGG-GGHHHHHHHHHHTTC
T ss_pred cCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCC
Confidence 3456789999988765 678889999998885
No 244
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=32.32 E-value=19 Score=16.64 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=8.0
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 36999997543
No 245
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=32.27 E-value=19 Score=17.12 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=8.1
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||+-.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 36999997543
No 246
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=31.92 E-value=20 Score=16.48 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=7.5
Q ss_pred cceEEEEEec
Q psy3346 62 HRGFGFVEFI 71 (79)
Q Consensus 62 ~~g~~fv~f~ 71 (79)
.+||+||+-.
T Consensus 12 ~kGfGFI~~~ 21 (66)
T 1c9o_A 12 EKGYGFIEVE 21 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 3699999754
No 247
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=31.18 E-value=26 Score=16.79 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=12.4
Q ss_pred CHHHHHHHhHhcCCee
Q psy3346 33 KQSEVEELFKAFGELK 48 (79)
Q Consensus 33 ~~~~l~~~f~~~g~i~ 48 (79)
|--|+++++++||-+-
T Consensus 4 tlYDVqQLLK~fG~~I 19 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIV 19 (72)
T ss_dssp SHHHHHHHHHTTTCCC
T ss_pred cHHHHHHHHHHCCEEE
Confidence 4458899999999653
No 248
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=30.61 E-value=21 Score=16.78 Aligned_cols=10 Identities=40% Similarity=0.972 Sum_probs=7.5
Q ss_pred cceEEEEEec
Q psy3346 62 HRGFGFVEFI 71 (79)
Q Consensus 62 ~~g~~fv~f~ 71 (79)
.+||+||.-.
T Consensus 12 ~kGfGFI~~~ 21 (73)
T 3a0j_A 12 EKGYGFIERE 21 (73)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEecC
Confidence 3699999754
No 249
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=30.35 E-value=41 Score=16.46 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=16.2
Q ss_pred eCCCCCCCHHHHHHHhHhc
Q psy3346 26 RNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 26 ~nl~~~~~~~~l~~~f~~~ 44 (79)
|.|+..+++++|.+++.+.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 4678899999999999875
No 250
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.90 E-value=22 Score=17.04 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.1
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||+-.+
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 36999997543
No 251
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=29.82 E-value=16 Score=13.95 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=12.7
Q ss_pred CCCCCCCHHHHHHHhHhcCCe
Q psy3346 27 NIPFQAKQSEVEELFKAFGEL 47 (79)
Q Consensus 27 nl~~~~~~~~l~~~f~~~g~i 47 (79)
|-|+++.-..-.+-|.+||.+
T Consensus 2 naPFeiGi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRA 22 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSC
T ss_pred CCceeEeeEecHHHHHHHhHH
Confidence 456666555555667777754
No 252
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=29.64 E-value=54 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHhHhcCC
Q psy3346 27 NIPFQAKQSEVEELFKAFGE 46 (79)
Q Consensus 27 nl~~~~~~~~l~~~f~~~g~ 46 (79)
.||...+...+..++..||.
T Consensus 195 ~LP~~y~~~~y~~fI~~yGT 214 (367)
T 2rd7_A 195 ELPDQYNYGMYAKFINDYGT 214 (367)
T ss_dssp TSCSSCCHHHHHHHHHHHCS
T ss_pred hCcccCCHHHHHHHHHHcCc
Confidence 66888888888999999995
No 253
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.63 E-value=23 Score=16.28 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=7.7
Q ss_pred cceEEEEEec
Q psy3346 62 HRGFGFVEFI 71 (79)
Q Consensus 62 ~~g~~fv~f~ 71 (79)
.+||+||.-.
T Consensus 11 ~kGfGFI~~~ 20 (66)
T 1g6p_A 11 KKGYGFITKD 20 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEecC
Confidence 3699999754
No 254
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=29.57 E-value=22 Score=17.64 Aligned_cols=9 Identities=44% Similarity=1.147 Sum_probs=6.9
Q ss_pred cceEEEEEe
Q psy3346 62 HRGFGFVEF 70 (79)
Q Consensus 62 ~~g~~fv~f 70 (79)
.+||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 469999963
No 255
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=28.80 E-value=29 Score=17.76 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=7.7
Q ss_pred HHHHHHhHhcC
Q psy3346 35 SEVEELFKAFG 45 (79)
Q Consensus 35 ~~l~~~f~~~g 45 (79)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45788888887
No 256
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=28.21 E-value=25 Score=16.44 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=7.9
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||.-.+
T Consensus 16 ~kGfGFI~~~~ 26 (71)
T 3i2z_B 16 SKGFGFITPED 26 (71)
T ss_dssp TTTEEEEEETT
T ss_pred CCCcEEEecCC
Confidence 36999997543
No 257
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.02 E-value=34 Score=23.03 Aligned_cols=48 Identities=10% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHhH----hcCCeeEEEeecccCCCCCcceEEEEEecCHHHHh
Q psy3346 28 IPFQAKQSEVEELFK----AFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77 (79)
Q Consensus 28 l~~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 77 (79)
.+...+--+|..+|- .+|-|..+.+...+ ......++++.|.+.+++.
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P--~P~~~~~~~~~f~d~~~a~ 402 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP--TPEYQKYGSVAFPNFEQGV 402 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE--CCSEEEEEEEEESSHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeecc--CCccccccccccCCchhhh
Confidence 344445556777772 46778888775542 3445677889999988764
No 258
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.02 E-value=76 Score=16.14 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=18.1
Q ss_pred eeEEEeecccCCCCCcceEEEEEecCHHHHhc
Q psy3346 47 LKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78 (79)
Q Consensus 47 i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 78 (79)
|.++..+.. .+||-||+=.+..++..
T Consensus 41 I~Si~~~~~------lkGyIyVEA~~~~~V~~ 66 (106)
T 3h7h_B 41 IKSVVAPEH------VKGYIYVEAYKQTHVKQ 66 (106)
T ss_dssp CCEEEECTT------CCSEEEEEESSHHHHHH
T ss_pred eEEEEecCC------CceEEEEEeCCHHHHHH
Confidence 666654332 57999999888777654
No 259
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.96 E-value=32 Score=17.22 Aligned_cols=10 Identities=40% Similarity=0.683 Sum_probs=7.6
Q ss_pred ceEEEEEecC
Q psy3346 63 RGFGFVEFIT 72 (79)
Q Consensus 63 ~g~~fv~f~~ 72 (79)
+||+||+-.+
T Consensus 28 KGfGFI~~dd 37 (97)
T 2ytx_A 28 EAFGFIERGD 37 (97)
T ss_dssp SSEEEEECSS
T ss_pred CCceEEecCC
Confidence 5999997543
No 260
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=24.84 E-value=61 Score=14.92 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=15.5
Q ss_pred eCCCCCCCHHHHHHHhHhc
Q psy3346 26 RNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 26 ~nl~~~~~~~~l~~~f~~~ 44 (79)
-+|+..++.++|+.-|...
T Consensus 9 Lgv~~~as~~~Ik~ayr~l 27 (77)
T 1hdj_A 9 LGLARGASDEEIKRAYRRQ 27 (77)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 4788899999999888654
No 261
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.82 E-value=32 Score=16.87 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.6
Q ss_pred ceEEEEEecC
Q psy3346 63 RGFGFVEFIT 72 (79)
Q Consensus 63 ~g~~fv~f~~ 72 (79)
+||+||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 5999997543
No 262
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.36 E-value=63 Score=14.91 Aligned_cols=20 Identities=5% Similarity=0.320 Sum_probs=16.4
Q ss_pred EeCCCCCCCHHHHHHHhHhc
Q psy3346 25 VRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f~~~ 44 (79)
|-+|+..++.++|+.-|...
T Consensus 12 iLgv~~~as~~eIk~ayr~l 31 (78)
T 2ctp_A 12 ILGVSRGASDEDLKKAYRRL 31 (78)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 34789999999999988764
No 263
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.13 E-value=34 Score=16.85 Aligned_cols=10 Identities=20% Similarity=0.700 Sum_probs=7.7
Q ss_pred ceEEEEEecC
Q psy3346 63 RGFGFVEFIT 72 (79)
Q Consensus 63 ~g~~fv~f~~ 72 (79)
+||+||.-.+
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 5999998653
No 264
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=24.06 E-value=19 Score=16.35 Aligned_cols=21 Identities=19% Similarity=0.554 Sum_probs=14.6
Q ss_pred EEeCCCCCCCHHHHHHHhHhc
Q psy3346 24 LVRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 24 ~v~nl~~~~~~~~l~~~f~~~ 44 (79)
|+.|+|..+....+++.+..|
T Consensus 42 flenvprgtktahirealrry 62 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHHH
Confidence 466888887777777666554
No 265
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=23.43 E-value=79 Score=20.97 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.2
Q ss_pred eCCCCCCCHHHHHHHhHhcCC
Q psy3346 26 RNIPFQAKQSEVEELFKAFGE 46 (79)
Q Consensus 26 ~nl~~~~~~~~l~~~f~~~g~ 46 (79)
..||...+...+..++..||.
T Consensus 289 ~~LP~~y~~~~y~~fi~~yGT 309 (554)
T 3ojy_A 289 MELPDQYNYGMYAKFINDYGT 309 (554)
T ss_dssp HTCCSSCCHHHHHHHHHHHCS
T ss_pred HhCCccCCHHHHHHHHHhcCc
Confidence 357888888888999999985
No 266
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.42 E-value=67 Score=14.84 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=16.3
Q ss_pred EeCCCCCCCHHHHHHHhHhc
Q psy3346 25 VRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f~~~ 44 (79)
|-+|+..++.++|+.-|...
T Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (79)
T 2dn9_A 12 ILGVPRNASQKEIKKAYYQL 31 (79)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 44789999999999888654
No 267
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=23.14 E-value=86 Score=20.68 Aligned_cols=21 Identities=29% Similarity=0.733 Sum_probs=16.9
Q ss_pred eCCCCCCCHHHHHHHhHhcCC
Q psy3346 26 RNIPFQAKQSEVEELFKAFGE 46 (79)
Q Consensus 26 ~nl~~~~~~~~l~~~f~~~g~ 46 (79)
..||...+...+..++..||.
T Consensus 268 ~~LP~~y~~~~y~~fi~~yGT 288 (537)
T 3ojy_B 268 KRLPLEYSYGEYRDLFRDFGT 288 (537)
T ss_dssp TTCCSSCCHHHHHHHHHHHCS
T ss_pred HhcccccCHHHHHHHHHhcCc
Confidence 356777888888899999984
No 268
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=22.64 E-value=68 Score=14.61 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=16.1
Q ss_pred EeCCCCCCCHHHHHHHhHhc
Q psy3346 25 VRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f~~~ 44 (79)
|-+|+..++.++|+.-|...
T Consensus 13 iLgl~~~a~~~eIk~ayr~l 32 (73)
T 2och_A 13 VLGVKPDASDNELKKAYRKM 32 (73)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 44789999999999888654
No 269
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=22.07 E-value=67 Score=16.87 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.2
Q ss_pred eCCCCCCCHHHHHHHhHhcC
Q psy3346 26 RNIPFQAKQSEVEELFKAFG 45 (79)
Q Consensus 26 ~nl~~~~~~~~l~~~f~~~g 45 (79)
|.|+..++++.|.+++....
T Consensus 80 Gqi~~kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 80 GQLSEKVSEQGLIEILKKVS 99 (118)
T ss_dssp TCCCSCBCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 46788999999999998875
No 270
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=21.44 E-value=92 Score=15.71 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=23.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHhHhcCCe
Q psy3346 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGEL 47 (79)
Q Consensus 17 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i 47 (79)
--.+.++|+.+.-+......|..++-.||..
T Consensus 7 ~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 7 FFEGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TTTTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred hhCCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 3458899998876655667788888888853
No 271
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.19 E-value=82 Score=15.00 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=16.0
Q ss_pred EeCCCCCCCHHHHHHHhHhc
Q psy3346 25 VRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f~~~ 44 (79)
|-+|+..++.++|+..|...
T Consensus 12 iLgv~~~as~~eIk~ayr~l 31 (88)
T 2ctr_A 12 ILGVPKSASERQIKKAFHKL 31 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHHH
Confidence 34788999999999888654
No 272
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.99 E-value=82 Score=14.98 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=16.6
Q ss_pred EeCCCCCCCHHHHHHHhHhc
Q psy3346 25 VRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f~~~ 44 (79)
|-+|+..++.++|+.-|...
T Consensus 22 iLgv~~~as~~eIk~ayr~l 41 (88)
T 2cug_A 22 VLGVSRTASQADIKKAYKKL 41 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHHH
Confidence 45899999999999888664
No 273
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=20.99 E-value=49 Score=18.02 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.4
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||+-.+
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 36999998654
No 274
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=20.81 E-value=97 Score=15.72 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=31.1
Q ss_pred EEEeCCCCCCCHHHHHHHhHh-------cCCeeEEEeecccCCCCCcceE--E-EEEecCHHHHh
Q psy3346 23 ILVRNIPFQAKQSEVEELFKA-------FGELKFVRLPKKMVGSGLHRGF--G-FVEFITKNEAK 77 (79)
Q Consensus 23 l~v~nl~~~~~~~~l~~~f~~-------~g~i~~~~~~~~~~~~~~~~g~--~-fv~f~~~~~a~ 77 (79)
+-+-.|...++.+++.++... ...|..+.+-.+ .++..+|| + .++|.+.++.+
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~--~s~~~~g~d~~l~~~F~s~edl~ 87 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGAD--LGLAAGNYDFAVVADLDGEDGFR 87 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEEC--CSCSTTCCSEEEEEEEEHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccC--CCCCCCCeeEEEEEEECCHHHHH
Confidence 334467888888776555543 334666666555 33444454 3 46788777643
No 275
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=25.84 E-value=21 Score=16.63 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=7.8
Q ss_pred cceEEEEEecC
Q psy3346 62 HRGFGFVEFIT 72 (79)
Q Consensus 62 ~~g~~fv~f~~ 72 (79)
.+||+||.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T 2lss_A 15 TKNFGFIEQDN 25 (70)
Confidence 36999997543
No 276
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=82 Score=14.64 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.5
Q ss_pred EeCCCCCCCHHHHHHHhHhc
Q psy3346 25 VRNIPFQAKQSEVEELFKAF 44 (79)
Q Consensus 25 v~nl~~~~~~~~l~~~f~~~ 44 (79)
|-+|+..++.++|+.-|...
T Consensus 14 iLgv~~~as~~eIk~ayr~l 33 (82)
T 2ej7_A 14 VLDVPRQASSEAIKKAYRKL 33 (82)
T ss_dssp HTTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 44789999999999888664
No 277
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.05 E-value=1.2e+02 Score=16.60 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhHh-cCC---eeEEEeecccCCCCCcceEEEEEecCHHHHh
Q psy3346 30 FQAKQSEVEELFKA-FGE---LKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77 (79)
Q Consensus 30 ~~~~~~~l~~~f~~-~g~---i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 77 (79)
.+.+..+|++.+.. |+. ...|.=....-..|.+.|||.| |.+.+.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aK 81 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLL 81 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 46788888888865 542 1222212221135667788887 88887764
Done!