Your job contains 1 sequence.
>psy3346
MGSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG
LHRGFGFVEFITKNEAKRV
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3346
(79 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 254 1.6e-20 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 253 2.1e-20 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 252 2.7e-20 1
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 251 3.5e-20 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 242 1.5e-19 1
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 242 3.1e-19 1
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 229 7.4e-18 1
FB|FBgn0036018 - symbol:CG3335 species:7227 "Drosophila m... 218 1.1e-16 1
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 206 2.1e-15 1
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 169 5.2e-12 2
WB|WBGene00004315 - symbol:rbd-1 species:6239 "Caenorhabd... 173 6.6e-12 1
UNIPROTKB|H0YIL2 - symbol:RBM19 "Probable RNA-binding pro... 148 1.5e-10 1
POMBASE|SPBP22H7.02c - symbol:SPBP22H7.02c "RNA-binding p... 158 2.5e-10 1
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 157 3.4e-10 1
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 155 5.1e-10 1
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 148 2.8e-09 1
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 148 2.9e-09 1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s... 114 6.1e-07 1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s... 114 6.1e-07 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 110 1.6e-06 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 110 1.6e-06 1
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 112 2.5e-06 1
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 120 3.6e-06 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 120 4.8e-06 1
TAIR|locus:2099931 - symbol:SCL30 "SC35-like splicing fac... 109 7.1e-06 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 114 7.3e-06 1
UNIPROTKB|C9JE21 - symbol:RBM28 "RNA-binding protein 28" ... 105 1.0e-05 1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi... 100 1.9e-05 1
UNIPROTKB|K7EJM5 - symbol:TARDBP "TAR DNA-binding protein... 102 2.1e-05 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 111 2.2e-05 1
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 107 2.4e-05 1
MGI|MGI:1916394 - symbol:Slirp "SRA stem-loop interacting... 99 2.4e-05 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 112 2.6e-05 1
SGD|S000005054 - symbol:NOP15 "Constituent of 66S pre-rib... 102 2.8e-05 1
UNIPROTKB|I3L7S7 - symbol:LOC100621383 "Uncharacterized p... 104 2.8e-05 1
UNIPROTKB|K7EN94 - symbol:TARDBP "TAR DNA-binding protein... 102 2.9e-05 1
RGD|1585290 - symbol:Slirp "SRA stem-loop interacting RNA... 98 3.0e-05 1
UNIPROTKB|B1AKP7 - symbol:TARDBP "TAR DNA-binding protein... 102 5.4e-05 1
UNIPROTKB|G3V162 - symbol:TARDBP "TAR DNA-binding protein... 102 5.5e-05 1
UNIPROTKB|I3LNA4 - symbol:LOC100621383 "Uncharacterized p... 104 5.7e-05 1
UNIPROTKB|E2QS43 - symbol:TARDBP "Uncharacterized protein... 104 5.8e-05 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 95 6.3e-05 1
UNIPROTKB|Q2KJ45 - symbol:TARDBP "Uncharacterized protein... 101 7.1e-05 1
UNIPROTKB|F1NBY1 - symbol:TARDBP "TAR DNA-binding protein... 103 7.4e-05 1
UNIPROTKB|Q5ZLN5 - symbol:TARDBP "TAR DNA-binding protein... 103 7.4e-05 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 104 8.1e-05 1
WB|WBGene00004388 - symbol:rnp-5 species:6239 "Caenorhabd... 100 8.6e-05 1
TAIR|locus:2173567 - symbol:AT5G60980 species:3702 "Arabi... 103 8.6e-05 1
UNIPROTKB|Q13148 - symbol:TARDBP "TAR DNA-binding protein... 102 9.5e-05 1
UNIPROTKB|Q9NW13 - symbol:RBM28 "RNA-binding protein 28" ... 105 0.00010 1
RGD|1310906 - symbol:Tardbp "TAR DNA binding protein" spe... 99 0.00011 1
UNIPROTKB|D4A9S4 - symbol:Tardbp "Protein Tardbp" species... 99 0.00011 1
UNIPROTKB|G4N7Z3 - symbol:MGG_03506 "Uncharacterized prot... 99 0.00011 1
UNIPROTKB|G3MX91 - symbol:TARDBP "Uncharacterized protein... 101 0.00012 1
UNIPROTKB|B0QYY7 - symbol:RBFOX2 "RNA-binding protein fox... 95 0.00013 1
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 102 0.00014 1
WB|WBGene00011043 - symbol:rbm-28 species:6239 "Caenorhab... 102 0.00016 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 91 0.00017 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 100 0.00020 1
MGI|MGI:2387629 - symbol:Tardbp "TAR DNA binding protein"... 99 0.00020 1
UNIPROTKB|E2RSQ3 - symbol:SLIRP "Uncharacterized protein"... 90 0.00021 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 90 0.00021 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 102 0.00025 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 97 0.00026 1
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 101 0.00027 1
UNIPROTKB|D6RFL5 - symbol:RBM47 "RNA-binding protein 47" ... 89 0.00027 1
UNIPROTKB|F1PJX5 - symbol:RBFOX3 "Uncharacterized protein... 95 0.00028 1
UNIPROTKB|D6R9M7 - symbol:RBM47 "RNA-binding protein 47" ... 89 0.00031 1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 95 0.00032 1
TAIR|locus:2086804 - symbol:SCL30A "SC35-like splicing fa... 94 0.00032 1
ZFIN|ZDB-GENE-030131-3777 - symbol:tardbp "TAR DNA bindin... 97 0.00033 1
GENEDB_PFALCIPARUM|PFE0160c - symbol:PFE0160c "Ser/Arg-ri... 95 0.00034 1
UNIPROTKB|Q8I468 - symbol:PFE0160c "Ser/Arg-rich splicing... 95 0.00034 1
UNIPROTKB|A6NFN3 - symbol:RBFOX3 "RNA binding protein fox... 95 0.00035 1
UNIPROTKB|I3LKV0 - symbol:SLIRP "Uncharacterized protein"... 88 0.00035 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 88 0.00035 1
UNIPROTKB|J9PAH3 - symbol:RBFOX3 "Uncharacterized protein... 95 0.00035 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 88 0.00036 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 88 0.00036 1
ZFIN|ZDB-GENE-070620-21 - symbol:zgc:165603 "zgc:165603" ... 88 0.00037 1
UNIPROTKB|B4DF29 - symbol:RBFOX3 "RNA binding protein fox... 95 0.00037 1
ZFIN|ZDB-GENE-090713-1 - symbol:raver2 "ribonucleoprotein... 100 0.00041 1
UNIPROTKB|B0QYV1 - symbol:RBM9 "RNA binding protein fox-1... 95 0.00043 1
CGD|CAL0002077 - symbol:NOP15 species:5476 "Candida albic... 93 0.00043 1
UNIPROTKB|J3QRF4 - symbol:RBFOX3 "RNA binding protein fox... 95 0.00043 1
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 99 0.00044 1
UNIPROTKB|B0QYY4 - symbol:RBFOX2 "RNA-binding protein fox... 95 0.00046 1
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 97 0.00046 1
MGI|MGI:106368 - symbol:Rbfox3 "RNA binding protein, fox-... 95 0.00046 1
RGD|1560070 - symbol:Rbfox3 "RNA binding protein, fox-1 h... 95 0.00047 1
UNIPROTKB|J9P300 - symbol:RBFOX2 "RNA binding protein fox... 95 0.00047 1
UNIPROTKB|F1M2V8 - symbol:Rbm9 "RNA binding protein fox-1... 95 0.00047 1
UNIPROTKB|F1LUP8 - symbol:Rbm9 "RNA binding protein fox-1... 95 0.00048 1
UNIPROTKB|Q8N9W6 - symbol:BOLL "Protein boule-like" speci... 93 0.00048 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 95 0.00049 1
UNIPROTKB|F1P8W1 - symbol:RBFOX2 "RNA binding protein fox... 95 0.00049 1
UNIPROTKB|O43251 - symbol:RBFOX2 "RNA binding protein fox... 95 0.00049 1
UNIPROTKB|F1SPT7 - symbol:RBFOX2 "RNA binding protein fox... 95 0.00050 1
UNIPROTKB|A6QPR6 - symbol:RBFOX2 "RNA binding protein fox... 95 0.00050 1
UNIPROTKB|F1N2A9 - symbol:RBFOX2 "RNA binding protein fox... 95 0.00051 1
WARNING: Descriptions of 39 database sequences were not reported due to the
limiting value of parameter V = 100.
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 254 (94.5 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 51/74 (68%), Positives = 56/74 (75%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A T RK KQT SKILVRNIPFQA Q E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 808 ALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG 867
Query: 65 FGFVEFITKNEAKR 78
FGFV+FITK +AK+
Sbjct: 868 FGFVDFITKQDAKK 881
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 253 (94.1 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 50/74 (67%), Positives = 56/74 (75%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A T+ RK KQT SKILVRNIPFQA E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 816 AVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRG 875
Query: 65 FGFVEFITKNEAKR 78
FGFV+F+TK +AKR
Sbjct: 876 FGFVDFLTKQDAKR 889
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 252 (93.8 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 50/74 (67%), Positives = 57/74 (77%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A T RK KQT SKILVRNIPFQA + E++ELF FGELK VRLPKKM G+G HRG
Sbjct: 816 ALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRG 875
Query: 65 FGFVEFITKNEAKR 78
FGFV+F+TK +AKR
Sbjct: 876 FGFVDFLTKQDAKR 889
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 251 (93.4 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 50/74 (67%), Positives = 54/74 (72%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A T RK KQT SKILVRNIPFQA E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 821 APTATRKKQVARKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRG 880
Query: 65 FGFVEFITKNEAKR 78
FGFV+F TK +AKR
Sbjct: 881 FGFVDFFTKQDAKR 894
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 48/74 (64%), Positives = 54/74 (72%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A RK V KQ SKILVRNIPFQA E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 479 AVKSSRKKQTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRG 538
Query: 65 FGFVEFITKNEAKR 78
FGFV+F+TK +AK+
Sbjct: 539 FGFVDFLTKQDAKK 552
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 242 (90.2 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 48/74 (64%), Positives = 54/74 (72%)
Query: 5 ATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
A RK V KQ SKILVRNIPFQA E+ ELF FGELK VRLPKKM G+G HRG
Sbjct: 803 AVKSSRKKQTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRG 862
Query: 65 FGFVEFITKNEAKR 78
FGFV+F+TK +AK+
Sbjct: 863 FGFVDFLTKQDAKK 876
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 229 (85.7 bits), Expect = 7.4e-18, P = 7.4e-18
Identities = 47/76 (61%), Positives = 54/76 (71%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S KRK KQT SKILVRNIPFQA E+ ELF FGELK VRLPKK +G G H
Sbjct: 787 SGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIG-GSH 845
Query: 63 RGFGFVEFITKNEAKR 78
RGFGF++F+TK +AK+
Sbjct: 846 RGFGFIDFLTKQDAKK 861
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 42/71 (59%), Positives = 57/71 (80%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV-GSGLHRGFGF 67
+R+ ++ KQTG+KILVRNIPFQA+ EV ++FKAFGEL+ +R+PKK G HRGFGF
Sbjct: 773 QRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGF 832
Query: 68 VEFITKNEAKR 78
V++++K EAKR
Sbjct: 833 VDYMSKAEAKR 843
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 206 (77.6 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 10 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
R + +QT +KI VR PFQ E++E+F FGELK VRLPKK+ G+G HRGFGFV+
Sbjct: 781 RHKHSPRRQTDTKIWVRVCPFQGDSRELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVD 840
Query: 70 FITKNEAKR 78
F+TK +AKR
Sbjct: 841 FLTKQDAKR 849
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 169 (64.5 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 31/57 (54%), Positives = 45/57 (78%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
SKI+++N+PF++ E+ +LF A+GE++ VR+PKK G HRGFGFVEF+T+ EAK
Sbjct: 795 SKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGG--HRGFGFVEFLTEEEAK 849
Score = 99 (39.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
+K++ + +LV+NIPF+ ++ E+ ELF FGEL V L R +E+I NE
Sbjct: 548 SKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPA-------RTIALIEYIHPNE 600
Query: 76 AK 77
AK
Sbjct: 601 AK 602
Score = 30 (15.6 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 4 EATTVKRKSSNVAKQTGSK 22
E +KRK + +Q+ K
Sbjct: 110 EKKELKRKQDKLEQQSNKK 128
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 173 (66.0 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 8 VKRKSSNVAKQTG--SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+KRK K+ G +K+LVRN+PF+A EVE LF+ FG +K +R+PKK HRGF
Sbjct: 734 LKRKEVK-QKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGF 792
Query: 66 GFVEFITKNEAKR 78
GFV+FI+ +EA R
Sbjct: 793 GFVDFISADEAHR 805
>UNIPROTKB|H0YIL2 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC009731 EMBL:AC073863
EMBL:AC090669 HGNC:HGNC:29098 ChiTaRS:RBM19 Ensembl:ENST00000552384
Bgee:H0YIL2 Uniprot:H0YIL2
Length = 110
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 44 FGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
FGELK VRLPKKM G+G HRGFGFV+F+TK +AKR
Sbjct: 5 FGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 39
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 158 (60.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G +A RK + +K G+KIL++N+PF+A + +V+ L A+G+L+ VR+PKK S
Sbjct: 703 GVDAAAEVRKQDS-SKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA- 760
Query: 62 HRGFGFVEFITKNEA 76
RGF F EF+T EA
Sbjct: 761 -RGFAFAEFVTAREA 774
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 157 (60.3 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S++ K KS+ K++G KI+V+N+PF+A + +V ELF +FG+LK VR+PKK S
Sbjct: 749 SQSGNTKTKSN---KKSG-KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSA-- 802
Query: 63 RGFGFVEFITKNEAK 77
RGF FVEF+ EA+
Sbjct: 803 RGFAFVEFLLPKEAE 817
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 155 (59.6 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 2 GSEATTVKRKSSNVAKQTG--SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS 59
G +A +RK K +KI+++N+PFQA + +V LF A+G+L+ VR+PKK S
Sbjct: 676 GMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS 735
Query: 60 GLHRGFGFVEFITKNEAK 77
RGFGF +F++ EA+
Sbjct: 736 A--RGFGFADFVSAREAE 751
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 148 (57.2 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 11 KSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
K SN K +K+ V+NI F+A + E+ +LF FG++K +RLPKK +G + G+ FVEF
Sbjct: 693 KDSNKDKPC-TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQ--YAGYAFVEF 749
Query: 71 ITKNEA 76
+TK EA
Sbjct: 750 VTKQEA 755
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 148 (57.2 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/68 (48%), Positives = 48/68 (70%)
Query: 12 SSNVAKQTG--SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
S++ K++G SKI+++N+PF+A + ++ ELF AFG+LK VR+PKK S RGF FVE
Sbjct: 706 SASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSA--RGFAFVE 763
Query: 70 FITKNEAK 77
F EA+
Sbjct: 764 FNLMKEAE 771
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 7 TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 66
T+ A T + V N+P++A +S V+ELF FGE+ VRL K +G RGFG
Sbjct: 50 TLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDK-RTGKRRGFG 108
Query: 67 FVEFITKNEAK 77
FV I ++A+
Sbjct: 109 FV-VIAASQAQ 118
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 7 TVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFG 66
T+ A T + V N+P++A +S V+ELF FGE+ VRL K +G RGFG
Sbjct: 50 TLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDK-RTGKRRGFG 108
Query: 67 FVEFITKNEAK 77
FV I ++A+
Sbjct: 109 FV-VIAASQAQ 118
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 2 GSEAT-TVKRKSSN-VAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 58
GS +T T SSN +A + L V N+P++A ++ V ELF G + VRL K
Sbjct: 49 GSPSTNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDK-H 107
Query: 59 SGLHRGFGFVEFITKNEAKRV 79
+G RGFGFVE + + K +
Sbjct: 108 TGKRRGFGFVEMASDDLDKAI 128
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 2 GSEAT-TVKRKSSN-VAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 58
GS +T T SSN +A + L V N+P++A ++ V ELF G + VRL K
Sbjct: 49 GSPSTNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDK-H 107
Query: 59 SGLHRGFGFVEFITKNEAKRV 79
+G RGFGFVE + + K +
Sbjct: 108 TGKRRGFGFVEMASDDLDKAI 128
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 112 (44.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 9 KRKSSNVAKQTG-SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
+R SS + +G S +L+RN+P A+ +++ + F+ FG LK + LP+ +G RGFGF
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYY-TGEPRGFGF 92
Query: 68 VEF 70
V++
Sbjct: 93 VKY 95
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 120 (47.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
K+++RN+PFQAK S+++ +F A G + V +PK +GL +GF FV+F K +A
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFE-TGLPKGFAFVKFTCKKDA 385
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 120 (47.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
+++ N G +I V N+ + A + +++ELF FG ++ VRLP+K+ G +GFG+V
Sbjct: 984 RKQDRNGPIYEGREIHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGS--KGFGYV 1041
Query: 69 EFITKNEA 76
F +K EA
Sbjct: 1042 VFSSKEEA 1049
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 109 (43.4 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
GS +LVRNIP + E+ E F+ FG ++ V +P+ SG RGF FVEF+ +A
Sbjct: 47 GS-LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYY-SGQPRGFAFVEFVDAYDA 101
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 114 (45.2 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 4 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
+A + S N ++ V NI F +++++ +F+ FGEL+FV+L K G R
Sbjct: 256 QARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRS--R 313
Query: 64 GFGFVEFITKNEAK 77
G+GFV+F N+A+
Sbjct: 314 GYGFVQFRDPNQAR 327
>UNIPROTKB|C9JE21 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00944978
ProteinModelPortal:C9JE21 SMR:C9JE21 STRING:C9JE21
Ensembl:ENST00000459726 ArrayExpress:C9JE21 Bgee:C9JE21
Uniprot:C9JE21
Length = 204
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
K K + VA + +++++RN+ F+ + +++ +F FG + V +P+K G RGFGFV
Sbjct: 137 KAKKAKVADKK-ARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP--DGKMRGFGFV 193
Query: 69 EFITKNEA 76
+F EA
Sbjct: 194 QFKNLLEA 201
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
K K+S SKI+VRN+PF + ++ F AFGE+ V+L K +G+ F+
Sbjct: 28 KIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKR-SKGYAFI 86
Query: 69 EFITKNEA 76
+F ++++A
Sbjct: 87 QFTSQDDA 94
>UNIPROTKB|K7EJM5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000473118 Uniprot:K7EJM5
Length = 201
Score = 102 (41.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSE-VEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
K++ A K++VRN+P+ K E + F++FG++K+V LPKK GS L GFGF
Sbjct: 138 KQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKK--GSQL-AGFGF 194
Query: 68 VEFITKNEAKR 78
V K A++
Sbjct: 195 VVLRGKKNAEK 205
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
G+KI V +P +A ++ + F FG ++ +PK SG HRGFGFV F A RV
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSG-HRGFGFVTFAENGVADRV 297
>MGI|MGI:1916394 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=IGI] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1916394 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
HOGENOM:HOG000276232 CTD:81892 eggNOG:NOG291073
GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 ChiTaRS:SLIRP EMBL:AJ293625 EMBL:AK007699
EMBL:BC100567 IPI:IPI00318935 IPI:IPI00462115 RefSeq:NP_081234.2
UniGene:Mm.355701 ProteinModelPortal:Q9D8T7 SMR:Q9D8T7
STRING:Q9D8T7 PhosphoSite:Q9D8T7 PaxDb:Q9D8T7 PRIDE:Q9D8T7
Ensembl:ENSMUST00000160488 Ensembl:ENSMUST00000161023 GeneID:380773
KEGG:mmu:380773 UCSC:uc007oje.2 InParanoid:Q9D8T7 NextBio:401221
Bgee:Q9D8T7 CleanEx:MM_1810035L17RIK Genevestigator:Q9D8T7
GermOnline:ENSMUSG00000021040 Uniprot:Q9D8T7
Length = 112
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A+ +K S+ + TG I VR IP+ A SE+ E F FG ++ +P +G HR
Sbjct: 3 ASAIKGLSA-LRSSTGRPIAFVRKIPWTAAASELREHFAQFGHVRRCTVPFDKE-TGFHR 60
Query: 64 GFGFVEFITKNE 75
G G+V+F ++ E
Sbjct: 61 GMGWVQFSSQEE 72
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 112 (44.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 8 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
++R + A G ++ V NI F+ + +VE F+ +G+++ VR+PK+ H+GFG+
Sbjct: 744 LRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRF---NQHKGFGY 800
Query: 68 VEFITKNEAK 77
V T +A+
Sbjct: 801 VVMTTNQDAE 810
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 102 (41.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 4 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPK-KMVGSGLH 62
+A K K ++ I V +P + E+ + F FG+LK VRL + K G+ H
Sbjct: 74 QANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRH 133
Query: 63 RGFGFVEFITKNEA 76
+GF+EF+ K +A
Sbjct: 134 --YGFLEFVNKEDA 145
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 104 (41.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 24 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDIKTGHS 77
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 78 KGFGFVRF-TEYETQ 91
>UNIPROTKB|K7EN94 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000476201 Uniprot:K7EN94
Length = 222
Score = 102 (41.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 132 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHS 185
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 186 KGFGFVRF-TEYETQ 199
>RGD|1585290 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1585290 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473982 CTD:81892
GeneTree:ENSGT00390000008624 OrthoDB:EOG4Z62Q4 IPI:IPI00365864
RefSeq:NP_001102977.1 UniGene:Rn.65910 Ensembl:ENSRNOT00000016479
GeneID:688717 KEGG:rno:688717 UCSC:RGD:1585290 NextBio:737107
Uniprot:D4A4W6
Length = 111
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A+ VK ++ + +TG I +R IP+ A SE+ E F FG ++ +P +G HR
Sbjct: 3 ASAVKGLTA-LRSRTGRPIAFIRKIPWTAASSELREHFAQFGHVRRCTVPFDKE-TGFHR 60
Query: 64 GFGFVEFITKNE 75
G G+V+F ++ E
Sbjct: 61 GMGWVQFSSQEE 72
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 102 (41.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 104 (41.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 90 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDIKTGHS 143
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 144 KGFGFVRF-TEYETQ 157
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 104 (41.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDIKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
SK+ + + + + +++ F +FGE+ VR+ GSG RGFGFV+F + +A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDK-GSGRSRGFGFVDFAEEGDA 95
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 101 (40.6 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + ++++ F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQV-KKDIKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 103 (41.3 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDIKTGHS 144
Query: 63 RGFGFVEF 70
+GFGFV F
Sbjct: 145 KGFGFVRF 152
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 103 (41.3 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDIKTGHS 144
Query: 63 RGFGFVEF 70
+GFGFV F
Sbjct: 145 KGFGFVRF 152
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 104 (41.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 9 KRKSSNVAKQTGSK-------ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
K ++ N A+ G + + V N+PF A + V E+F G + +RLP M SG
Sbjct: 365 KERAQNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDME-SGR 423
Query: 62 HRGFGFVEFITKNEAKR 78
+GFG+V++ + +EA++
Sbjct: 424 PKGFGYVQYSSVDEARK 440
>WB|WBGene00004388 [details] [associations]
symbol:rnp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0007281 GO:GO:0040020 EMBL:FO080195
GeneTree:ENSGT00700000104336 eggNOG:NOG331533 KO:K14325
RefSeq:NP_497276.2 ProteinModelPortal:Q21155 SMR:Q21155
IntAct:Q21155 STRING:Q21155 PaxDb:Q21155 EnsemblMetazoa:K02F3.11.1
EnsemblMetazoa:K02F3.11.2 GeneID:175244 KEGG:cel:CELE_K02F3.11
UCSC:K02F3.11.1 CTD:175244 WormBase:K02F3.11 HOGENOM:HOG000015855
InParanoid:Q21155 OMA:MIDMPVN NextBio:887378 Uniprot:Q21155
Length = 289
Score = 100 (40.3 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 17/70 (24%), Positives = 40/70 (57%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
+R + + +++++N+ ++ +EE+F +G +K V LP + +HRG+G+V
Sbjct: 121 RRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYV 180
Query: 69 EFITKNEAKR 78
E+ +A++
Sbjct: 181 EYDNLEDAEK 190
>TAIR|locus:2173567 [details] [associations]
symbol:AT5G60980 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
EMBL:AB008269 InterPro:IPR018222 PROSITE:PS50177 HSSP:P33331
EMBL:AY062108 EMBL:BT003010 IPI:IPI00529722 RefSeq:NP_200906.2
UniGene:At.27353 ProteinModelPortal:Q9FME2 SMR:Q9FME2 IntAct:Q9FME2
STRING:Q9FME2 PRIDE:Q9FME2 EnsemblPlants:AT5G60980.2 GeneID:836219
KEGG:ath:AT5G60980 TAIR:At5g60980 HOGENOM:HOG000239086
InParanoid:Q9FME2 OMA:AQESHER PhylomeDB:Q9FME2
ProtClustDB:CLSN2680580 Genevestigator:Q9FME2 Uniprot:Q9FME2
Length = 460
Score = 103 (41.3 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 12 SSNV-AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF--GFV 68
SS+V + G I VRN+PF + +++EE+FK FG +K + V S +GF GFV
Sbjct: 283 SSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGI---QVRSNKQQGFCFGFV 339
Query: 69 EFITKN 74
EF T +
Sbjct: 340 EFETSS 345
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 102 (41.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + +++E F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 105 (42.0 bits), Expect = 0.00010, P = 0.00010
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
K K + VA + +++++RN+ F+ + +++ +F FG + V +P+K G RGFGFV
Sbjct: 103 KAKKAKVADKK-ARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP--DGKMRGFGFV 159
Query: 69 EFITKNEA 76
+F EA
Sbjct: 160 QFKNLLEA 167
Score = 100 (40.3 bits), Expect = 0.00035, P = 0.00035
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
KRK + + G + +RN+ F +++ E+ EL + FGELK+VR+ + +G F
Sbjct: 324 KRKLPSDVNE-GKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHP-DTEHSKGCAFA 381
Query: 69 EFITKNEAKR 78
+F+T+ A++
Sbjct: 382 QFMTQEAAQK 391
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + ++++ F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|D4A9S4 [details] [associations]
symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00197538 ProteinModelPortal:D4A9S4
Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
Length = 288
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + ++++ F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|G4N7Z3 [details] [associations]
symbol:MGG_03506 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001234 RefSeq:XP_003716414.1 ProteinModelPortal:G4N7Z3
EnsemblFungi:MGG_03506T0 GeneID:2676436 KEGG:mgr:MGG_03506
Uniprot:G4N7Z3
Length = 295
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 10 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFK--AFGELKFVRLPKKMVGSGLHRGFGF 67
++++N A+ G +I + N+ ++ + S+VE + + F + V++P GS +RG+ F
Sbjct: 6 QQNNNAAQSEGRRIYIGNLNYELQSSDVEGMLQQSGFPNYEAVKIPVDP-GSQRNRGYCF 64
Query: 68 VEFITKNEAKR 78
V+F T +EA+R
Sbjct: 65 VDFTTADEAQR 75
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + ++++ F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQV-KKDIKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 116 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 172
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 173 -KGFGFVTFENSADADR 188
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 102 (41.0 bits), Expect = 0.00014, P = 0.00014
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 3 SEATTVKR-KSSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 60
+E ++ K+ K+ + GSK L N+ F ++++VE FK GE+ VR G
Sbjct: 277 AEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNR-DDG 335
Query: 61 LHRGFGFVEFITKNEAKR 78
RGFG VEF + EA++
Sbjct: 336 SFRGFGHVEFASSEEAQK 353
>WB|WBGene00011043 [details] [associations]
symbol:rbm-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0040026 EMBL:Z83119 HSSP:P52298
eggNOG:NOG323727 GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL
PIR:T23934 RefSeq:NP_497077.2 ProteinModelPortal:O62325 SMR:O62325
STRING:O62325 PaxDb:O62325 EnsemblMetazoa:R05H10.2.1
EnsemblMetazoa:R05H10.2.2 GeneID:175145 KEGG:cel:CELE_R05H10.2
UCSC:R05H10.2 CTD:175145 WormBase:R05H10.2 HOGENOM:HOG000021963
InParanoid:O62325 NextBio:886958 Uniprot:O62325
Length = 608
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 10 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
RK AK ++++RN+PF+ K+ +++ L G+ + LP GFGF++
Sbjct: 84 RKRFEQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQ 143
Query: 70 FITKNEAKR 78
F+ K +A++
Sbjct: 144 FVEKADAEK 152
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
GSK+ V N+ ++ +++E F A+G +K ++ +G RGFGFVE + EA+
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRA-TGRSRGFGFVEMGSDQEAQ 58
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 100 (40.3 bits), Expect = 0.00020, P = 0.00020
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 10 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
+K + + V N+PF A + V F E+K +RLP + SG +GFG+V
Sbjct: 331 KKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQE-SGRRKGFGYVT 389
Query: 70 FITKNEAK 77
F + +AK
Sbjct: 390 FNSVEDAK 397
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 99 (39.9 bits), Expect = 0.00020, P = 0.00020
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S A VKR A Q S ++V +P++ + ++++ F FGE+ V++ KK + +G
Sbjct: 91 SSAVKVKR-----AVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQV-KKDLKTGHS 144
Query: 63 RGFGFVEFITKNEAK 77
+GFGFV F T+ E +
Sbjct: 145 KGFGFVRF-TEYETQ 158
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A + R + + + G ++ VR IP+ A SE+ E F FG ++ +P +G HR
Sbjct: 2 AASAARGAVALRTRIGRRVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKE-TGFHR 60
Query: 64 GFGFVEFITKNE 75
G G+V F ++ +
Sbjct: 61 GMGWVHFSSEED 72
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 74
+A Q G + V N+P+Q + E+ F A G + VR+ +G RGF FVEF +
Sbjct: 1 MASQ-GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRE-TGRPRGFAFVEFSEEA 58
Query: 75 EAKR 78
A+R
Sbjct: 59 GAQR 62
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 3 SEATTVKRKSSNVAK-QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
+E TT K + K + S++++RN+ F+ ++ +++++F FG + ++P K G
Sbjct: 217 AEETTSTEKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKP--DGK 274
Query: 62 HRGFGFVEFITKNEA 76
RGF FV F EA
Sbjct: 275 KRGFAFVLFKRMPEA 289
Score = 101 (40.6 bits), Expect = 0.00032, P = 0.00032
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G T + S K+ G +++RN+ F+ + E++++F FG + R+P K G
Sbjct: 106 GETKNTEEIPSPTKKKENGW-LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKP--DGK 162
Query: 62 HRGFGFVEFITKNEAKR 78
+GF FV+F +EA++
Sbjct: 163 KKGFAFVQFKCVSEAEK 179
Score = 100 (40.3 bits), Expect = 0.00041, P = 0.00041
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 3 SEATTVKRKSSNVAKQT---GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS 59
SE T +K N G I +RN+ F +++ +EE+ FGEL +VR+ +
Sbjct: 418 SEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNP-DT 476
Query: 60 GLHRGFGFVEFITKNEAKR 78
G+ +G F +F +K A++
Sbjct: 477 GVSKGCAFAQFKSKEAAEK 495
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 10 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
R SS K G+ + V +P Q ++E +F +FG++ R+ + SGL +G GF+
Sbjct: 121 RPSSESIK--GANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNI-SGLSKGVGFIR 177
Query: 70 FITKNEAKR 78
F +NEA+R
Sbjct: 178 FDQRNEAER 186
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 101 (40.6 bits), Expect = 0.00027, P = 0.00027
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 8 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
+K K + VA + +++++RN+ F+ + +++ +F FG + V +P+K G RGF F
Sbjct: 102 LKPKKAKVADKK-ARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKP--DGKMRGFAF 158
Query: 68 VEFITKNEA 76
V+F EA
Sbjct: 159 VQFKNLLEA 167
Score = 97 (39.2 bits), Expect = 0.00073, P = 0.00073
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 4 EATTVKRKSSNVAKQT--GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
E + KRK + G + +RN+ F +++ ++ EL + FG+LK+VR+ +
Sbjct: 313 EVSKKKRKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHP-DTEH 371
Query: 62 HRGFGFVEFITKNEAKR 78
+G F +F+T+ A++
Sbjct: 372 SKGCAFAQFMTQEAAQK 388
>UNIPROTKB|D6RFL5 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00968211
ProteinModelPortal:D6RFL5 SMR:D6RFL5 Ensembl:ENST00000514782
ArrayExpress:D6RFL5 Bgee:D6RFL5 Uniprot:D6RFL5
Length = 137
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
Q G ++ V IP + E+ +F+A G + +RL M G +RG+ FV + K+EAK
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRL--MMDFDGKNRGYAFVMYCHKHEAK 125
Query: 78 R 78
R
Sbjct: 126 R 126
>UNIPROTKB|F1PJX5 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
Length = 279
Score = 95 (38.5 bits), Expect = 0.00028, P = 0.00028
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 16 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 72
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 73 TSSDADR 79
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 89 (36.4 bits), Expect = 0.00031, P = 0.00031
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
Q G ++ V IP + E+ +F+A G + +RL M G +RG+ FV + K+EAK
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRL--MMDFDGKNRGYAFVMYCHKHEAK 125
Query: 78 R 78
R
Sbjct: 126 R 126
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 95 (38.5 bits), Expect = 0.00032, P = 0.00032
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 3 SEATTVKRKSSNVAKQ----TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 58
+E+T + +K A + G+ + V I + ++ E++++F FG + VR+ ++ V
Sbjct: 79 NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138
Query: 59 SGLHRGFGFVEFITKNEA 76
RGFGF+ F T EA
Sbjct: 139 KA-SRGFGFLSFSTVEEA 155
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 94 (38.1 bits), Expect = 0.00032, P = 0.00032
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
+ +LVRN+ +Q ++ F+ FG +K + LP+ +G RGFGF++F+ +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYY-TGDPRGFGFIQFMDPADA 91
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 97 (39.2 bits), Expect = 0.00033, P = 0.00033
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLH 62
S AT +KR Q S ++V +P++ + ++++ F FGE+ V++ K+ V +G
Sbjct: 97 SSATKIKR-----GDQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQV-KRDVKTGNS 150
Query: 63 RGFGFVEF 70
+GFGFV F
Sbjct: 151 KGFGFVRF 158
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
K +L+R + F S V E FK FG +K V LP RGFGFVEF +A
Sbjct: 8 KNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKE-PRGFGFVEFYDAKDA 66
Query: 77 KR 78
++
Sbjct: 67 EQ 68
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
K +L+R + F S V E FK FG +K V LP RGFGFVEF +A
Sbjct: 8 KNQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKE-PRGFGFVEFYDAKDA 66
Query: 77 KR 78
++
Sbjct: 67 EQ 68
>UNIPROTKB|A6NFN3 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
Uniprot:A6NFN3
Length = 312
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 146
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 147 TSSDADR 153
>UNIPROTKB|I3LKV0 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000008624 OMA:SNELREH Ensembl:ENSSSCT00000031620
Uniprot:I3LKV0
Length = 102
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 25 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
VR IP+ A +E+ E F FG ++ +P +G HRG G+++F ++ E V
Sbjct: 14 VRKIPWTAASNELREHFAQFGHIRKCIVPFDKE-TGFHRGMGWIQFSSEEELHNV 67
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ V N PFQ + E+ F + G++ VR+ +G RGF F+EF + A+R
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRE-TGRPRGFAFIEFAEEGSAQR 61
>UNIPROTKB|J9PAH3 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
Uniprot:J9PAH3
Length = 314
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 31 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 87
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 88 TSSDADR 94
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 88 (36.0 bits), Expect = 0.00036, P = 0.00036
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
+ V N+P++ + EV+ LF FG + VRL + +G +GFGFVE
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRK-TGRRKGFGFVE 111
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 88 (36.0 bits), Expect = 0.00036, P = 0.00036
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
+ V N+P++ + EV+ LF FG + VRL + +G +GFGFVE
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRK-TGRRKGFGFVE 111
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 88 (36.0 bits), Expect = 0.00037, P = 0.00037
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
GSE ++ S + Q K+ + IP ++ +++ LF+ FG++ + + K +G+
Sbjct: 63 GSEPISIHPDSGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRY-TGM 121
Query: 62 HRGFGFVEFITKNEA 76
H+G F+ + + A
Sbjct: 122 HKGCAFLTYCARESA 136
>UNIPROTKB|B4DF29 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
Bgee:B4DF29 Uniprot:B4DF29
Length = 325
Score = 95 (38.5 bits), Expect = 0.00037, P = 0.00037
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 146
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 147 TSSDADR 153
>ZFIN|ZDB-GENE-090713-1 [details] [associations]
symbol:raver2 "ribonucleoprotein, PTB-binding 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-090713-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000006046
EMBL:AL954175 EMBL:BX663603 IPI:IPI00961168
Ensembl:ENSDART00000111837 ArrayExpress:F1QAP4 Bgee:F1QAP4
Uniprot:F1QAP4
Length = 862
Score = 100 (40.3 bits), Expect = 0.00041, P = 0.00041
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 6 TTVKRKSSNVAKQ-TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRG 64
T+V+ + NV Q T S + V N+P+ ++ +EL +++G ++ L + +G +G
Sbjct: 151 TSVRGRDINVQLQPTDSLLCVTNLPYTVTATQFQELVRSYGNIERCFLVYSDL-TGHSKG 209
Query: 65 FGFVEFITKNEAKR 78
+GFVE++ K+ A R
Sbjct: 210 YGFVEYMKKDSASR 223
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 95 (38.5 bits), Expect = 0.00043, P = 0.00043
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 74 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 130
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 131 -KGFGFVTFENSADADR 146
>CGD|CAL0002077 [details] [associations]
symbol:NOP15 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000915 "cytokinesis, actomyosin
contractile ring assembly" evidence=IEA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:NOG244773 KO:K14838 RefSeq:XP_720342.1
RefSeq:XP_888701.1 ProteinModelPortal:Q5AFL8 STRING:Q5AFL8
GeneID:3637966 GeneID:3704039 KEGG:cal:CaO19.7050
KEGG:cal:CaO19_7050 Uniprot:Q5AFL8
Length = 267
Score = 93 (37.8 bits), Expect = 0.00043, P = 0.00043
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 3 SEATTVKRKSSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPK-KMVGSG 60
SEATT ++N + ++ S ++ + +P ++SE++ F FG++ V+L + K G+
Sbjct: 105 SEATTTNTSANNKSTKSKSGVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNT 164
Query: 61 LHRGFGFVEFITKNEAK 77
H +GF+EF + AK
Sbjct: 165 KH--YGFIEFDSIEVAK 179
>UNIPROTKB|J3QRF4 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC021534 EMBL:AC073624 HGNC:HGNC:27097
OMA:LQASLCR EMBL:AC020689 EMBL:AC027824 EMBL:AC055858 EMBL:AC142247
ProteinModelPortal:J3QRF4 Ensembl:ENST00000583458 Uniprot:J3QRF4
Length = 358
Score = 95 (38.5 bits), Expect = 0.00043, P = 0.00043
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 89 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 145
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 146 TSSDADR 152
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
K K + VA + +++++RN+ F+ + +++ +F +G + V +PKK G RGF FV
Sbjct: 103 KHKKAKVADKK-ARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKP--DGKMRGFAFV 159
Query: 69 EFITKNEA 76
+F EA
Sbjct: 160 QFKNLLEA 167
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 73 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 129
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 130 -KGFGFVTFENSADADR 145
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 97 (39.2 bits), Expect = 0.00046, P = 0.00046
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 3 SEAT-TVKRKSSNVAKQTGS---KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVG 58
SEA + + +S TG K+ V N+ F + ++ ++F+AFG ++ V+LP
Sbjct: 243 SEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPE- 301
Query: 59 SGLHRGFGFVEFITKNEAK 77
+G +GFGF++F+ +K
Sbjct: 302 TGQCKGFGFIQFVQLEHSK 320
>MGI|MGI:106368 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C.
elegans) 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043025 "neuronal cell
body" evidence=IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0097458 "neuron part" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106368 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622 EMBL:CH466558
GO:GO:0043484 EMBL:AL591075 GO:GO:0000381 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 CTD:146713
EMBL:FJ958310 EMBL:FJ958311 EMBL:AK079086 EMBL:AK160816
EMBL:AL591514 EMBL:AL591544 EMBL:BC054403 IPI:IPI00222115
IPI:IPI00408241 IPI:IPI00648836 IPI:IPI00720112 IPI:IPI00894965
RefSeq:NP_001020102.2 RefSeq:NP_001034256.1 RefSeq:NP_001034257.1
UniGene:Mm.341103 ProteinModelPortal:Q8BIF2 SMR:Q8BIF2
IntAct:Q8BIF2 STRING:Q8BIF2 PaxDb:Q8BIF2 PRIDE:Q8BIF2
Ensembl:ENSMUST00000017576 Ensembl:ENSMUST00000069343
Ensembl:ENSMUST00000103023 Ensembl:ENSMUST00000106278
Ensembl:ENSMUST00000117731 Ensembl:ENSMUST00000120061 GeneID:52897
KEGG:mmu:52897 UCSC:uc007mpo.1 InParanoid:Q8BIF2 OMA:LQASLCR
NextBio:309687 Bgee:Q8BIF2 Genevestigator:Q8BIF2 Uniprot:Q8BIF2
Length = 374
Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 146
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 147 TSSDADR 153
>RGD|1560070 [details] [associations]
symbol:Rbfox3 "RNA binding protein, fox-1 homolog (C. elegans)
3" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043025 "neuronal cell body"
evidence=IEA;ISO] [GO:0097458 "neuron part" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
RGD:1560070 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0003677 GO:GO:0043025 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473948 GO:GO:0000381
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 OrthoDB:EOG4NVZKS CTD:146713 OMA:LQASLCR
IPI:IPI00370377 RefSeq:NP_001127970.1 UniGene:Rn.143966
Ensembl:ENSRNOT00000004524 GeneID:287847 KEGG:rno:287847
NextBio:627138 Uniprot:D4A2H6
Length = 375
Score = 95 (38.5 bits), Expect = 0.00047, P = 0.00047
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 146
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 147 TSSDADR 153
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 95 (38.5 bits), Expect = 0.00047, P = 0.00047
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 93 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 149
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 150 -KGFGFVTFENSADADR 165
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 95 (38.5 bits), Expect = 0.00047, P = 0.00047
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 93 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 149
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 150 -KGFGFVTFENSADADR 165
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 95 (38.5 bits), Expect = 0.00048, P = 0.00048
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 93 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 149
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 150 -KGFGFVTFENSADADR 165
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 93 (37.8 bits), Expect = 0.00048, P = 0.00048
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
++I V I F+ +S++ + F +G +K V++ +G+ +G+GFV F T+ +A+++
Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR--AGVSKGYGFVTFETQEDAQKI 89
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 95 (38.5 bits), Expect = 0.00049, P = 0.00049
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 72
SN + + + ++V +P Q E++ LF + GE++ +L + + G G+GFV +I
Sbjct: 58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYID 117
Query: 73 KNEAKR 78
+A++
Sbjct: 118 PKDAEK 123
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 95 (38.5 bits), Expect = 0.00049, P = 0.00049
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 103 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 159
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 160 -KGFGFVTFENSADADR 175
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 95 (38.5 bits), Expect = 0.00049, P = 0.00049
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 103 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 159
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 160 -KGFGFVTFENSADADR 175
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 95 (38.5 bits), Expect = 0.00050, P = 0.00050
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 109 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 165
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 166 -KGFGFVTFENSADADR 181
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 95 (38.5 bits), Expect = 0.00050, P = 0.00050
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 111 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 167
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 168 -KGFGFVTFENSADADR 183
>UNIPROTKB|F1N2A9 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 InterPro:IPR025670
Pfam:PF12414 IPI:IPI00685735 OMA:HGEQSTN EMBL:DAAA02013800
Ensembl:ENSBTAT00000026808 Uniprot:F1N2A9
Length = 398
Score = 95 (38.5 bits), Expect = 0.00051, P = 0.00051
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 111 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 167
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 168 -KGFGFVTFENSADADR 183
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 93 (37.8 bits), Expect = 0.00052, P = 0.00052
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
++I V I F+ ++++ + F +G +K V++ +G+ +G+GFV F T+ +A+R+
Sbjct: 45 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR--AGVSKGYGFVTFETQEDAQRI 101
>UNIPROTKB|H7C5G8 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655 EMBL:AC018635
HGNC:HGNC:21863 ChiTaRS:RBM28 ProteinModelPortal:H7C5G8
Ensembl:ENST00000487602 Uniprot:H7C5G8
Length = 186
Score = 89 (36.4 bits), Expect = 0.00053, P = 0.00053
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRL 52
KRK + + G + +RN+ F +++ E+ EL + FGELK+VR+
Sbjct: 130 KRKLPSDVNE-GKTVFIRNLSFDSEEEELGELLQQFGELKYVRI 172
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 98 (39.6 bits), Expect = 0.00055, P = 0.00055
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 4 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
E ++ +K SN +Q I VRNIP+ A ++E F FG +K+ LP +GL +
Sbjct: 294 EESSHPKKKSN--RQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYA-LPVVDKETGLAK 350
Query: 64 GFGFVEFITKNEA 76
G FV F K +A
Sbjct: 351 GSAFVAF-AKEDA 362
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 98 (39.6 bits), Expect = 0.00055, P = 0.00055
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 4 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
E ++ +K SN +Q I VRNIP+ A ++E F FG +K+ LP +GL +
Sbjct: 294 EESSHPKKKSN--RQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYA-LPVVDKETGLAK 350
Query: 64 GFGFVEFITKNEA 76
G FV F K +A
Sbjct: 351 GSAFVAF-AKEDA 362
>UNIPROTKB|G3MZL2 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 EMBL:DAAA02011496
RefSeq:NP_001178319.1 UniGene:Bt.32577 Ensembl:ENSBTAT00000065989
GeneID:507132 KEGG:bta:507132 NextBio:20867915 Uniprot:G3MZL2
Length = 610
Score = 97 (39.2 bits), Expect = 0.00056, P = 0.00056
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 4 EATTVKRKSSNVAKQT--GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
E + KRK + G + +RN+ F +++ ++ EL + FG+LK+VR+ +
Sbjct: 167 EVSKKKRKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHP-DTEH 225
Query: 62 HRGFGFVEFITKNEAKR 78
+G F +F+T+ A++
Sbjct: 226 SKGCAFAQFMTQEAAQK 242
>UNIPROTKB|Q32P59 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
Uniprot:Q32P59
Length = 111
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A + R + + G + VR IP+ A SE+ E F FG ++ +P +G H+
Sbjct: 2 AASAARGAMALRTNIGRPVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKE-TGFHK 60
Query: 64 GFGFVEFITKNE 75
G G++ F ++ E
Sbjct: 61 GMGWIHFSSEEE 72
>UNIPROTKB|G3V2S9 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008044 HGNC:HGNC:20495 ChiTaRS:SLIRP
EMBL:AC008372 ProteinModelPortal:G3V2S9 SMR:G3V2S9
Ensembl:ENST00000557431 ArrayExpress:G3V2S9 Bgee:G3V2S9
Uniprot:G3V2S9
Length = 124
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A + R ++ + + + VR IP+ A S+++E F FG ++ LP +G HR
Sbjct: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
Query: 64 GFGFVEF 70
G G+V+F
Sbjct: 61 GLGWVQF 67
>UNIPROTKB|G3V4X6 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008044 HGNC:HGNC:20495 ChiTaRS:SLIRP
EMBL:AC008372 ProteinModelPortal:G3V4X6 SMR:G3V4X6
Ensembl:ENST00000557623 ArrayExpress:G3V4X6 Bgee:G3V4X6
Uniprot:G3V4X6
Length = 98
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A + R ++ + + + VR IP+ A S+++E F FG ++ LP +G HR
Sbjct: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
Query: 64 GFGFVEF 70
G G+V+F
Sbjct: 61 GLGWVQF 67
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 8 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
V R S+++ K K+ + +PF + E+EE+ KA G +K +RL G +G +
Sbjct: 30 VFRYSTSLEKH---KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP--KGLAY 84
Query: 68 VEFITKNEAKR 78
VE+ +++A +
Sbjct: 85 VEYENESQASQ 95
>UNIPROTKB|J3KMY7 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC008044 CTD:81892
RefSeq:NP_001254792.1 UniGene:Hs.655105 GeneID:81892 KEGG:hsa:81892
HGNC:HGNC:20495 ChiTaRS:SLIRP EMBL:AC008372
ProteinModelPortal:J3KMY7 Ensembl:ENST00000238688 Uniprot:J3KMY7
Length = 107
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A + R ++ + + + VR IP+ A S+++E F FG ++ LP +G HR
Sbjct: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
Query: 64 GFGFVEF 70
G G+V+F
Sbjct: 61 GLGWVQF 67
>UNIPROTKB|Q9GZT3 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
CTD:81892 eggNOG:NOG291073 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 EMBL:AY860853 EMBL:AJ272055 EMBL:AF253980
EMBL:AF271779 EMBL:BC017895 IPI:IPI00009922 RefSeq:NP_001254792.1
RefSeq:NP_001254793.1 RefSeq:NP_112487.1 UniGene:Hs.655105
ProteinModelPortal:Q9GZT3 SMR:Q9GZT3 IntAct:Q9GZT3 STRING:Q9GZT3
PhosphoSite:Q9GZT3 DMDM:74762723 PaxDb:Q9GZT3 PeptideAtlas:Q9GZT3
PRIDE:Q9GZT3 DNASU:81892 Ensembl:ENST00000557342 GeneID:81892
KEGG:hsa:81892 UCSC:uc001xue.4 GeneCards:GC14P078175
HGNC:HGNC:20495 HPA:HPA020291 MIM:610211 neXtProt:NX_Q9GZT3
PharmGKB:PA134892132 InParanoid:Q9GZT3 PhylomeDB:Q9GZT3
ChiTaRS:SLIRP GenomeRNAi:81892 NextBio:72246 ArrayExpress:Q9GZT3
Bgee:Q9GZT3 CleanEx:HS_C14orf156 Genevestigator:Q9GZT3
GermOnline:ENSG00000119705 Uniprot:Q9GZT3
Length = 109
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 5 ATTVKRKSSNVAKQTGSKI-LVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
A + R ++ + + + VR IP+ A S+++E F FG ++ LP +G HR
Sbjct: 2 AASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHR 60
Query: 64 GFGFVEF 70
G G+V+F
Sbjct: 61 GLGWVQF 67
>WB|WBGene00008224 [details] [associations]
symbol:C50B8.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 EMBL:Z77654
PIR:T20095 RefSeq:NP_506360.1 ProteinModelPortal:Q18724 SMR:Q18724
STRING:Q18724 PaxDb:Q18724 EnsemblMetazoa:C50B8.1.1
EnsemblMetazoa:C50B8.1.2 GeneID:179840 KEGG:cel:CELE_C50B8.1
UCSC:C50B8.1 CTD:179840 WormBase:C50B8.1 HOGENOM:HOG000019397
InParanoid:Q18724 OMA:QVQRNRR NextBio:907080 Uniprot:Q18724
Length = 114
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
K TG + + ++ + +S++E FK +G ++ V + +GLHRGF + F +K+ A
Sbjct: 21 KNTGQTVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDP-DTGLHRGFASITFDSKDGA 79
Query: 77 KR 78
+
Sbjct: 80 NK 81
>UNIPROTKB|F1N700 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043025 "neuronal cell body" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:DAAA02049469 EMBL:DAAA02049462 EMBL:DAAA02049463
EMBL:DAAA02049464 EMBL:DAAA02049465 EMBL:DAAA02049466
EMBL:DAAA02049467 EMBL:DAAA02049468 IPI:IPI00708068
Ensembl:ENSBTAT00000008240 Uniprot:F1N700
Length = 432
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00057
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S KQ ++ V NIPF+ + ++ ++F FG++ V + GS +GFGFV F
Sbjct: 161 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS---KGFGFVTFE 217
Query: 72 TKNEAKR 78
T ++A R
Sbjct: 218 TSSDADR 224
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00057
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 145 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 201
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 202 -KGFGFVTFENSADADR 217
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 89 (36.4 bits), Expect = 0.00059, P = 0.00059
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
Q G ++ V IP + E+ +F+A G + +RL M G +RG+ FV + K+EAK
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRL--MMDFDGKNRGYAFVMYCHKHEAK 125
Query: 78 R 78
R
Sbjct: 126 R 126
>MGI|MGI:1933973 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C.
elegans) 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IGI;IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IDA] [GO:0021942 "radial glia guided migration of Purkinje
cell" evidence=IMP] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0050885 "neuromuscular process
controlling balance" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933973
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1
OrthoDB:EOG4NVZKS eggNOG:NOG293807 CTD:23543 OMA:HGEQSTN
ChiTaRS:RBFOX2 EMBL:AF387322 EMBL:AY659951 EMBL:AY659952
EMBL:AY659953 EMBL:AF229055 EMBL:AY904025 EMBL:DQ017388
EMBL:DQ017389 EMBL:AK044929 EMBL:AK077594 EMBL:BC002124
EMBL:BC027263 IPI:IPI00153656 IPI:IPI00223425 IPI:IPI00331207
IPI:IPI00606741 IPI:IPI00785326 IPI:IPI00877224 IPI:IPI00877264
IPI:IPI00877283 IPI:IPI00886410 RefSeq:NP_001104297.1
RefSeq:NP_001104298.1 RefSeq:NP_001104299.1 RefSeq:NP_001104300.1
RefSeq:NP_444334.3 RefSeq:NP_780596.1 UniGene:Mm.202774
ProteinModelPortal:Q8BP71 SMR:Q8BP71 STRING:Q8BP71
PhosphoSite:Q8BP71 PaxDb:Q8BP71 PRIDE:Q8BP71
Ensembl:ENSMUST00000048145 Ensembl:ENSMUST00000111581
Ensembl:ENSMUST00000166610 Ensembl:ENSMUST00000171751 GeneID:93686
KEGG:mmu:93686 UCSC:uc007wnc.2 UCSC:uc007wnd.2 UCSC:uc007wne.2
UCSC:uc007wnf.2 UCSC:uc007wng.2 UCSC:uc007wni.2 UCSC:uc011zvf.1
UCSC:uc011zvg.1 NextBio:351415 Bgee:Q8BP71 CleanEx:MM_RBM9
Genevestigator:Q8BP71 Uniprot:Q8BP71
Length = 449
Score = 95 (38.5 bits), Expect = 0.00061, P = 0.00061
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T ++S +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 162 GQQSQTQSSENSE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 218
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 219 -KGFGFVTFENSADADR 234
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 93 (37.8 bits), Expect = 0.00064, P = 0.00064
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
++I V I F+ +S++ + F +G +K V++ +G+ +G+GFV F T+ +A+++
Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR--AGVSKGYGFVTFETQEDAQKI 89
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 93 (37.8 bits), Expect = 0.00072, P = 0.00072
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
+ + V +P Q ++E+LF +G + R+ V +G+ RG GF+ F +NEA+
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAE 180
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 97 (39.2 bits), Expect = 0.00072, P = 0.00072
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
KRK + + G + +RN+ F +++ E+ EL + FG+LK+VR+ + +G F
Sbjct: 316 KRKLPSDVNE-GKTVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHP-DTEHSKGCAFA 373
Query: 69 EFITKNEAKR 78
+F+T+ A++
Sbjct: 374 QFMTQEAAQK 383
>UNIPROTKB|H0YJ40 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008044 HGNC:HGNC:20495 ChiTaRS:SLIRP
EMBL:AC008372 Ensembl:ENST00000556831 Uniprot:H0YJ40
Length = 96
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 25 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
VR IP+ A S+++E F FG ++ LP +G HRG G+V+F
Sbjct: 21 VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHRGLGWVQF 65
>UNIPROTKB|H0YJW7 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC008044 HGNC:HGNC:20495
ChiTaRS:SLIRP EMBL:AC008372 Ensembl:ENST00000556310 Bgee:H0YJW7
Uniprot:H0YJW7
Length = 76
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 25 VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
VR IP+ A S+++E F FG ++ LP +G HRG G+V+F
Sbjct: 7 VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKE-TGFHRGLGWVQF 51
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 96 (38.9 bits), Expect = 0.00075, P = 0.00075
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 18 QTGSKILVR-NIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
Q GSK L N+ +Q +S++E FK GE+ VRL G +G+G +EF + EA
Sbjct: 380 QGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSS--FDDGSFKGYGHIEFASPEEA 437
Query: 77 KR 78
++
Sbjct: 438 QK 439
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 89 (36.4 bits), Expect = 0.00079, P = 0.00079
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
Q G ++ V IP + E+ +F+A G + +RL M G +RG+ FV + K+EAK
Sbjct: 68 QRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRL--MMDFDGKNRGYAFVMYCHKHEAK 125
Query: 78 R 78
R
Sbjct: 126 R 126
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 92 (37.4 bits), Expect = 0.00079, P = 0.00079
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPK-KMVGSGLHRGFGFVEFITKNEAKR 78
+ ++V +P Q E+ LF + GE++ +L + K+ G L G+GFV ++T +A+R
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSL--GYGFVNYVTAKDAER 76
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 96 (38.9 bits), Expect = 0.00085, P = 0.00085
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
K K + VA + +++++RN+ F+ + +++ +F +G + V +P+K G RGF F+
Sbjct: 103 KHKKAKVADKK-ARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP--DGKMRGFAFI 159
Query: 69 EFITKNEA 76
+F EA
Sbjct: 160 QFKNLLEA 167
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 92 (37.4 bits), Expect = 0.00085, P = 0.00085
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPK-KMVGSGLHRGFGFVEFITKNEAKR 78
+ ++V +P Q E+ LF + GE++ +L + K+ G L G+GFV ++ N+A+R
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSL--GYGFVNYLNPNDAER 90
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 85 (35.0 bits), Expect = 0.00085, P = 0.00085
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKK--MVGSGLHRGFGFVEFITK 73
A + + + V +P A ++ + + F FGE+ V++PK + HRGF +VE+
Sbjct: 4 ASRWKATLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDA 63
Query: 74 NEAK 77
++AK
Sbjct: 64 DDAK 67
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 92 (37.4 bits), Expect = 0.00086, P = 0.00086
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 14 NVAKQTGSK----ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVE 69
++A +T S+ + V N+P++ ++S VEE F G + VR+ + V +G+ RGFG+V
Sbjct: 273 DLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRV-TGVGRGFGYVL 331
Query: 70 F 70
F
Sbjct: 332 F 332
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 93 (37.8 bits), Expect = 0.00087, P = 0.00086
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGS-GLHRGFGFVEFITKNEAKR 78
G + V+N+ +++EELF FG + ++ MV S G+ +G GFVEF T EA +
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKV---MVHSNGISKGVGFVEFSTSEEASK 278
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 96 (38.9 bits), Expect = 0.00092, P = 0.00092
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
K K + VA + +++++RN+ F+ + +++ +F +G + V +P+K G RGF F+
Sbjct: 103 KHKKAKVADKK-ARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP--DGKMRGFAFI 159
Query: 69 EFITKNEA 76
+F EA
Sbjct: 160 QFKNLLEA 167
>UNIPROTKB|B4DSU6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:AL135744 HOGENOM:HOG000231958 HOVERGEN:HBG002302
UniGene:Hs.508848 UniGene:Hs.708738 HGNC:HGNC:5035 ChiTaRS:HNRNPC
EMBL:AK299923 IPI:IPI00910718 SMR:B4DSU6 STRING:B4DSU6
Ensembl:ENST00000557442 Uniprot:B4DSU6
Length = 147
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 12 SSNVAKQT-----GSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+SNV +T S++ + N+ K+S+VE +F +G K+VG +H+GF
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG---------KIVGCSVHKGF 52
Query: 66 GFVEFITKNEAK 77
FV+++ + A+
Sbjct: 53 AFVQYVNERNAR 64
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 12 SSNVAKQT-----GSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+SNV +T S++ + N+ K+S+VE +F +G K+VG +H+GF
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG---------KIVGCSVHKGF 52
Query: 66 GFVEFITKNEAK 77
FV+++ + A+
Sbjct: 53 AFVQYVNERNAR 64
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 12 SSNVAKQT-----GSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+SNV +T S++ + N+ K+S+VE +F +G K+VG +H+GF
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG---------KIVGCSVHKGF 52
Query: 66 GFVEFITKNEAK 77
FV+++ + A+
Sbjct: 53 AFVQYVNERNAR 64
>UNIPROTKB|G3V4M8 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL135744
HGNC:HGNC:5035 ChiTaRS:HNRNPC ProteinModelPortal:G3V4M8 SMR:G3V4M8
Ensembl:ENST00000557336 ArrayExpress:G3V4M8 Bgee:G3V4M8
Uniprot:G3V4M8
Length = 66
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 12 SSNVAKQT-----GSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+SNV +T S++ + N+ K+S+VE +F +G K+VG +H+GF
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG---------KIVGCSVHKGF 52
Query: 66 GFVEFITKNEAK 77
FV+++ + A+
Sbjct: 53 AFVQYVNERNAR 64
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 12 SSNVAKQT-----GSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+SNV +T S++ + N+ K+S+VE +F +G K+VG +H+GF
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYG---------KIVGCSVHKGF 52
Query: 66 GFVEFITKNEAK 77
FV+++ + A+
Sbjct: 53 AFVQYVNERNAR 64
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 72
S+ +I V N+P+ ++++ + F FG ++ V++ + +G +G+ FV ++T
Sbjct: 36 SSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNF-RTGRSKGYAFVTYVT 94
Query: 73 KNEA 76
+A
Sbjct: 95 PKQA 98
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 72
S+ +I V N+P+ ++++ + F FG ++ V++ + +G +G+ FV ++T
Sbjct: 36 SSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNF-RTGRSKGYAFVTYVT 94
Query: 73 KNEA 76
+A
Sbjct: 95 PKQA 98
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 90 (36.7 bits), Expect = 0.00096, P = 0.00096
Identities = 16/59 (27%), Positives = 37/59 (62%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
++I V I F+ ++++ + F +G +K V++ +G+ +G+GFV F T+ +A+++
Sbjct: 45 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR--AGVSKGYGFVTFETQEDAQKI 101
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 92 (37.4 bits), Expect = 0.00099, P = 0.00099
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 2 GSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGL 61
G ++ T +++ +K T ++ V NIPF+ + ++ ++F FG++ V + GS
Sbjct: 94 GQQSQTQSSENTE-SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-- 150
Query: 62 HRGFGFVEFITKNEAKR 78
+GFGFV F +A R
Sbjct: 151 -KGFGFVTFENSADADR 166
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 79 79 0.00091 102 3 11 22 0.39 29
29 0.39 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 139
No. of states in DFA: 371 (40 KB)
Total size of DFA: 62 KB (2060 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.43u 0.19s 8.62t Elapsed: 00:00:00
Total cpu time: 8.43u 0.19s 8.62t Elapsed: 00:00:00
Start: Thu Aug 15 13:19:55 2013 End: Thu Aug 15 13:19:55 2013
WARNINGS ISSUED: 1