RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3346
(79 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 58.4 bits (141), Expect = 1e-13
Identities = 47/62 (75%), Positives = 52/62 (83%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
KQT SKILVRNIPFQA Q E+ ELF FGELK VRLPKKM G+G HRGFGFV+FITK +A
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 77 KR 78
K+
Sbjct: 65 KK 66
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 45.0 bits (106), Expect = 1e-08
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
K+ + + +Q Q + E F FGE+K + + RGFGFV F+ + +V
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECL-VMRDPLTKRSRGFGFVTFMDQAGVDKV 58
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 43.0 bits (101), Expect = 8e-08
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ V ++ ++ + E F G + +R+ + M+ + G+ +V F +A+R
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLGYAYVNFQQPADAER 57
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 42.6 bits (100), Expect = 1e-07
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ + V N+P +++ +F +G + + +G RG FV + + EA+
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN-ILRDKLTGRPRGVAFVRYNKREEAQE 63
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 41.5 bits (97), Expect = 3e-07
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
K+LV N+ F ++++ELF FG LK + SG G V F K +A +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALK 56
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 41.1 bits (96), Expect = 4e-07
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
KI V + + ++ E F FGE++ + + RGF F+ F + K++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIE-LPMDNKTNKRRGFCFITFKEEEPVKKI 57
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 41.2 bits (96), Expect = 4e-07
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLP--KKMVGSGLHRGFGFVEFITKNEAKRV 79
+ ++N+ F + ++ +F G +K + K G L GFGFVE+ +A++
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 59
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 41.6 bits (97), Expect = 5e-07
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 1 MGSEATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSG 60
M TV + K+ K+ + + F+ + + ++ +G+L + S
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPASK 59
Query: 61 LHRGFGFVEFITKNEAKRV 79
RGFGFV F + E
Sbjct: 60 RSRGFGFVTFSSMAEVDAA 78
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.7 bits (95), Expect = 6e-07
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 8 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
VKR A Q S ++V +P++ + +++E F FGE+ V++ K + +G +GFGF
Sbjct: 1 VKR-----AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGF 54
Query: 68 VEFITKNEAKRV 79
V F +V
Sbjct: 55 VRFTEYETQVKV 66
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 40.8 bits (95), Expect = 8e-07
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGEL-KFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
++ + IP K+ E+ E E V + +RGF FVE+ + A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 60
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 40.6 bits (95), Expect = 9e-07
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 17 KQTGSKILVRNI-PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
+ S++ + N+ K+S+VE +F +G++ +H+GF FV+++ +
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCS---------VHKGFAFVQYVNERN 62
Query: 76 AKR 78
A+
Sbjct: 63 ARA 65
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.3 bits (94), Expect = 1e-06
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 14 NVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 73
N + + I + + F FG++ +R+ +G+ FV F T
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-------EKGYSFVRFSTH 64
Query: 74 NEAKR 78
A
Sbjct: 65 ESAAH 69
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.7 bits (92), Expect = 2e-06
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPK----KMVGSGLHRGFGFVEFITKNEAK 77
++ V NIPF + + + F A L + V + F F+EF + +E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 78 R 78
+
Sbjct: 63 Q 63
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 39.3 bits (91), Expect = 2e-06
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
I + N+ + + + + F AFG + + +G +G+ F+ F + + +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 57
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.4 bits (93), Expect = 4e-06
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
K+ + + F+ + F+ +G L + + + RGFGFV + T E
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSRGFGFVTYATVEEVDAA 64
Score = 30.7 bits (68), Expect = 0.010
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
A T KI V I ++ + + F+ +G+++ + + GSG RGF FV F +
Sbjct: 93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR-GSGKKRGFAFVTFDDHDS 151
Query: 76 AKRV 79
++
Sbjct: 152 VDKI 155
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 38.9 bits (90), Expect = 4e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
+ + V +P Q E+E+LF +G + R+ V RG GF+ F + EA+
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV-SRGVGFIRFDKRIEAEEA 64
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 38.1 bits (88), Expect = 5e-06
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 19 TGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ + ++V +P E+ LF+A G + R+ + +G G+ FV+F ++ +++R
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-TGYSYGYAFVDFTSEMDSQR 59
Query: 79 V 79
Sbjct: 60 A 60
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 38.5 bits (89), Expect = 7e-06
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 15 VAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKN 74
+ + + +RN+P++ E+ ++F +G ++ ++ + RG +V +
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ----IRVGNTPETRGTAYVVYEDIF 57
Query: 75 EAKR 78
+AK
Sbjct: 58 DAKN 61
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 37.7 bits (87), Expect = 8e-06
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
K+ + + + + ++++ F FGE+ L + +G RGFGFV F +V
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI-TGRSRGFGFVLFKESESVDKV 57
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 37.6 bits (87), Expect = 1e-05
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
+ + V N+ F + ++ ELF G++K + + + GF FVE+ ++ +A+
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-KKTACGFCFVEYYSRADAE 63
Query: 78 RV 79
Sbjct: 64 NA 65
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 37.3 bits (86), Expect = 1e-05
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
K+ + + F+ + F+ +G L + + RGFGFV + T E
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCV-VMRDPNTKRSRGFGFVTYATVEEVDAA 64
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 36.5 bits (84), Expect = 3e-05
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
K+ + +P +V+EL +FG LK K +GL +G+ F E++ N +
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFN-LVKDSATGLSKGYAFCEYVDINVTDQ 58
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 35.9 bits (82), Expect = 5e-05
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
+ ++V +P Q E LF + GE++ +L + + +G G+GFV +I +A++
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYIDPKDAEKA 60
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 35.5 bits (81), Expect = 5e-05
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
KI V + +V+ F+ FG++ + HRGFGFV F +++ ++V
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAM-LMFDKTTNRHRGFGFVTFESEDIVEKV 57
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 35.0 bits (80), Expect = 9e-05
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 13 SNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFIT 72
++ K + I V+N+PF E+ + F + + K G+ G V F +
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFES 60
Query: 73 KNEAKR 78
++EA
Sbjct: 61 RDEATA 66
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 34.8 bits (79), Expect = 9e-05
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
+ +LV+N+P Q++V + FK G + V + + + F +EF + A
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK---NFRFARIEFARYDGALAA 56
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.0 bits (80), Expect = 1e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
S + V + E+ E F +G++ V +PK R F FV F A+ +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSL 58
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.9 bits (80), Expect = 1e-04
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
S++ V N+P + E+ +LF+ +G V +GFGF+ T+ A+
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYG-------KAGEVFIHKDKGFGFIRLETRTLAEIA 60
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 34.6 bits (79), Expect = 2e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
K I ++N+ + + F AFG + ++ GS + FV F T+ A
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYG---FVHFETQEAA 61
Query: 77 KRV 79
+R
Sbjct: 62 ERA 64
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 34.6 bits (79), Expect = 2e-04
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+I+V N+ + + ++F FG + + K ++ +++ A+
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQH 60
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.6 bits (79), Expect = 2e-04
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
+ V + + + + ELF G + K +G H+G+GFVEF+++ +A
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTH-MPKDRVTGQHQGYGFVEFLSEEDADYA 67
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 34.2 bits (78), Expect = 3e-04
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ + + + ++E+ F A G+++ VR+ S +G +VEF
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-SRRSKGIAYVEFCEIQSVPL 75
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 33.5 bits (76), Expect = 4e-04
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ V + + ++ E+F +G + V + S RGF FV F ++AK
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-SRRSRGFAFVYFENVDDAKE 66
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.6 bits (76), Expect = 6e-04
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S+ TG + +R +P++A ++++ F ++ G G VEF
Sbjct: 7 GSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFA 63
Query: 72 TKNEAKR 78
T +A
Sbjct: 64 THEDAVA 70
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 32.8 bits (74), Expect = 6e-04
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ + N P Q + +L + + + R F +++ +K +A+
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSI-RLPSLRFNTSRRFAYIDVTSKEDARY 58
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.1 bits (75), Expect = 6e-04
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
A +I V N+P + ++E++F +G ++ + L + F FVEF +
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG----GPPFAFVEFEDPRD 65
Query: 76 AKRV 79
A+
Sbjct: 66 AEDA 69
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 32.7 bits (74), Expect = 0.001
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
+K T ++ V NIPF+ + ++ ++F F + + + +GFGFV F +
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQF---GKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 76 AKRV 79
A R
Sbjct: 64 ADRA 67
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 32.3 bits (73), Expect = 0.001
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
I + N+ + K+ E+++ A L + S RG FV F + A
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.6 bits (71), Expect = 0.002
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
+ I V N+ ++++++ELF+ FG + + K +G +GF F+ F + +A R
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIY-LAKDKTTGQSKGFAFISFHRREDAARA 66
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 31.2 bits (70), Expect = 0.002
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
+K+ + N+ ++ +LF ++ G+ FV++ +N
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNW 49
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.7 bits (71), Expect = 0.003
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 17 KQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEA 76
+ +R +PF + E+ + F + G G FV+F ++ A
Sbjct: 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIA 70
Query: 77 KRV 79
++
Sbjct: 71 EKA 73
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 31.6 bits (71), Expect = 0.003
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
++ VRN+ + + + ++E+LF A+G L + P + +GF FV F+ A +
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK-PKGFAFVTFMFPEHAVK 65
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 31.2 bits (70), Expect = 0.003
Identities = 13/71 (18%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 8 VKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGF 67
++ ++ + +L +N+ F + E++E+F+ E++ V G +G +
Sbjct: 4 LEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQD------GKSKGIAY 57
Query: 68 VEFITKNEAKR 78
+EF ++ +A++
Sbjct: 58 IEFKSEADAEK 68
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 31.2 bits (70), Expect = 0.003
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ V N+ + + +LF G K + + + + FVEF +A
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCK---MITEHTSNDPYCFVEFYEHRDAAA 63
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.9 bits (69), Expect = 0.004
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFI 71
S + K + N+P+ + ++E F+ VRLP++ +GFG+ EF
Sbjct: 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNI-SAVRLPREPSNPERLKGFGYAEFE 65
Query: 72 TKNEAKRV 79
+
Sbjct: 66 DLDSLLSA 73
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 30.9 bits (69), Expect = 0.005
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMV-------GSGLHRGFGFVEFIT 72
S I V+ + ++ + FK G +K + + + +G +G V +
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 67
Query: 73 KNEAKR 78
AK
Sbjct: 68 PPTAKA 73
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 30.5 bits (68), Expect = 0.006
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 20 GSKILVRNIPFQA-KQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
G +I++RN+ + ++ + E F+ FG ++ + +P + F+ F K+ A+R
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 79 V 79
Sbjct: 64 A 64
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.8 bits (69), Expect = 0.006
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
G+ + + ++P + ++ ++F FG + L + FGFV + A+
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGN-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.5 bits (68), Expect = 0.006
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
T +KI V +P+ + + + F+ FG+++ +G RG+GFV + A+
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV-VITDRQTGKSRGYGFVTMADRAAAE 66
Query: 78 RV 79
R
Sbjct: 67 RA 68
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 30.5 bits (68), Expect = 0.007
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 20 GSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
G + V +I +A++ E++E F +GE +G +G+ VE+ T +A
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGE-IKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 30.2 bits (67), Expect = 0.009
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 12 SSNVAKQTGSKIL-VRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEF 70
S + K + S ++ VR + ++++ E + FG + +V + + VEF
Sbjct: 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-------FKRQALVEF 58
Query: 71 ITKNEAKR 78
+ AK
Sbjct: 59 ENIDSAKE 66
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 29.9 bits (66), Expect = 0.014
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 9 KRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFV 68
KR S + G + ++ +PF+A+ V + FK ++ +G G GFV
Sbjct: 7 KRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFV 65
Query: 69 EFITKNEAKRV 79
EF + + K
Sbjct: 66 EFRNEADYKAA 76
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.6 bits (66), Expect = 0.016
Identities = 4/50 (8%), Positives = 20/50 (40%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGF 65
+ S + ++ + + E+ + +GE++ + + + + +
Sbjct: 23 LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 72
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 29.2 bits (65), Expect = 0.019
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
T + V + + + F FG++ +++P + HRGF FVEF +A
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-TEKHRGFAFVEFELAEDAA 61
Query: 78 RV 79
Sbjct: 62 AA 63
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 29.1 bits (65), Expect = 0.020
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 38 EELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
E+L + +R G V F EA
Sbjct: 34 EDLRVECSKFGQIRKLLLFDRH--PDGVASVSFRDPEEADY 72
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 29.0 bits (64), Expect = 0.025
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 21 SKILVRNIPF-----QAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNE 75
S ++ +++ E LF+ + + + K + F
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-------SFKRVRINFSNPLS 58
Query: 76 AKR 78
A
Sbjct: 59 AAD 61
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.6 bits (63), Expect = 0.034
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
K+ V + F + +E++F +G++ V K + RGFGFV F ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVV-VVKDRETQRSRGFGFVTFENIDDAKD 62
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.6 bits (63), Expect = 0.037
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
S ILV+N+P + EV +L K + K ++ FV + +A+
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD--------LKYCYVDRNKRTAFVTLLNGEQAQN 55
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 28.2 bits (62), Expect = 0.040
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
+ ++ P A +++E + G++ +++ + + + +G FV F + AK+
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA--FKGSIFVVFDSIESAKKF 63
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 27.9 bits (61), Expect = 0.057
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 18 QTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAK 77
G + +RN+ F +++ + E+ + FG+LK+VR+ +G F +F+T+ A+
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH-SKGCAFAQFMTQEAAQ 64
Query: 78 R 78
+
Sbjct: 65 K 65
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.4 bits (60), Expect = 0.079
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKRV 79
KI V I ++ + + F+ +G+++ + + RGF FV F + ++
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KRGFAFVTFDDHDSVDKI 60
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 26.9 bits (59), Expect = 0.11
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ VRN+ + +E+ F R+ K R + FV F + +A
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------IRDYAFVHFSNREDAVE 59
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 26.8 bits (58), Expect = 0.11
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
IL+R +P EV +L + K ++G FV + +A+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY--------ELKYCFVDKYKGTAFVTLLNGEQAEA 48
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 26.8 bits (59), Expect = 0.14
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ + V P + S + F +G + + + + + +K +A++
Sbjct: 5 TWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN-------TGNWMHIRYQSKLQARK 54
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.6 bits (58), Expect = 0.14
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ + + NIP + +++ LF + G + + R ++ + EA +
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQ 63
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 26.7 bits (58), Expect = 0.16
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ NIPF + +V + + + +G G V+F +++A++
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARK 65
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 26.8 bits (58), Expect = 0.20
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 12 SSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM 56
SS + ++ + IL +N+P +E++E F FG L V LP+
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG 46
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 26.4 bits (57), Expect = 0.30
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
++V IP + ++ +LF+ +G + RG+GFV+F + + A++
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERYGP-IESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.1 bits (54), Expect = 0.47
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 23 ILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ +R + ++ +L + +G+ + +G+GFV+F + + A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGK-IVSTKAILDKTTNKCKGYGFVDFDSPSAAQK 55
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 25.4 bits (55), Expect = 0.52
Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 16 AKQTGSKILVRNIPFQ-AKQSEVEELFKAFGELKFVRLPKKM 56
+T + + + + ++ +L + FG + + K+
Sbjct: 4 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI 45
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.1 bits (54), Expect = 0.67
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 22 KILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+ V NIP++A + +++++F G + R +G +G+GF E+ + A
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFR-LVYDRETGKPKGYGFCEYQDQETALS 65
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 24.7 bits (53), Expect = 1.1
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 4 EATTVKRKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHR 63
+A+ V+ + + +Q + + + N+P + E+E + K FG++ R+ + G+ R
Sbjct: 2 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGT--SR 59
Query: 64 GFGFVEFITKNEAKRV 79
G GF + + + V
Sbjct: 60 GVGFARMESTEKCEAV 75
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 24.3 bits (52), Expect = 1.6
Identities = 6/58 (10%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITKNEAKR 78
+++ V + + + F FG + + F ++++ + + A+
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFG-------SIRTIDHVKGDSFAYIQYESLDAAQA 68
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 24.0 bits (51), Expect = 1.6
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 10 RKSSNVAKQTGSKILVRNIPFQAKQSEVEELFKAFGELKFVRLPKKM 56
SS + + ++N+ + + ++ LF F E K + +M
Sbjct: 8 MFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 54
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 24.0 bits (51), Expect = 1.7
Identities = 3/27 (11%), Positives = 14/27 (51%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFK 42
+++ ++LV +P ++++ +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMR 37
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 24.2 bits (51), Expect = 2.1
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 29 PFQAKQSEVEELFKAFGELKFVRLPKKMVGSGLHRGFGFVEFITK 73
PF +E+E LF ++ L K H+ +G K
Sbjct: 180 PFYVPHAEIERLFGKICNIR--CLEKVDAFEERHKSWGIDCLFEK 222
>d2okfa1 c.52.1.32 (A:4-139) FdxN element excision controlling
factor protein {Anabaena variabilis [TaxId: 1172]}
Length = 136
Score = 23.2 bits (50), Expect = 3.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 16 AKQTGSKILVRNIPFQAKQSEVEELFKAFGE 46
A++ G KI V F + S + E A G+
Sbjct: 45 AERQGQKIAVEVKSFLKQSSAISEFHTALGQ 75
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.2 bits (49), Expect = 3.6
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 13 SNVAKQTGSKILVRNIPFQAKQSEV---EELFKAFGELKFVRLP--KKMVGSGLHRGFGF 67
++V + + V + + EV E F FG++ V + GS +
Sbjct: 1 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAY 60
Query: 68 VEFITKNEAKR 78
V +I +A R
Sbjct: 61 VTYIRSEDALR 71
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 22.4 bits (48), Expect = 5.8
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 21 SKILVRNIPFQAKQSEVEELFKAFGELKFVR 51
SK+++R +P + +++E + E +
Sbjct: 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.358
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 259,192
Number of extensions: 10184
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 80
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)