Query psy3348
Match_columns 147
No_of_seqs 71 out of 73
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 22:42:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08687 C2_PKN-like C2 domain 100.0 4.9E-38 1.1E-42 233.4 4.0 63 3-69 30-92 (98)
2 KOG0694|consensus 99.7 2.8E-18 6.1E-23 159.5 2.3 115 4-128 170-290 (694)
3 cd04014 C2_PKC_epsilon C2 doma 98.7 3.1E-08 6.8E-13 71.7 6.8 66 5-70 59-129 (132)
4 cd08376 C2B_MCTP_PRT C2 domain 98.0 2.7E-05 6E-10 54.6 6.7 67 4-70 43-115 (116)
5 cd04043 C2_Munc13_fungal C2 do 98.0 3.7E-05 8E-10 54.7 6.9 67 5-71 48-122 (126)
6 cd08401 C2A_RasA2_RasA3 C2 dom 97.9 3.9E-05 8.6E-10 55.8 6.2 65 5-69 46-121 (121)
7 cd08678 C2_C21orf25-like C2 do 97.8 0.00011 2.5E-09 52.9 7.3 69 5-73 43-123 (126)
8 cd04052 C2B_Tricalbin-like C2 97.8 9.7E-05 2.1E-09 52.5 6.3 66 5-70 37-109 (111)
9 cd04036 C2_cPLA2 C2 domain pre 97.7 0.00012 2.6E-09 52.0 6.7 65 5-69 47-117 (119)
10 cd08391 C2A_C2C_Synaptotagmin_ 97.7 0.00017 3.6E-09 50.3 6.7 65 5-69 51-121 (121)
11 cd08681 C2_fungal_Inn1p-like C 97.6 0.00027 6E-09 49.7 6.3 65 5-69 46-118 (118)
12 KOG1452|consensus 97.5 4.3E-05 9.4E-10 68.6 1.5 73 5-77 98-175 (442)
13 cd08383 C2A_RasGAP C2 domain ( 97.4 0.00066 1.4E-08 47.2 5.9 65 5-69 41-117 (117)
14 cd04042 C2A_MCTP_PRT C2 domain 97.3 0.0011 2.3E-08 47.2 7.0 66 5-70 45-120 (121)
15 cd08373 C2A_Ferlin C2 domain f 97.2 0.0023 5E-08 45.9 7.2 70 4-73 37-119 (127)
16 cd04044 C2A_Tricalbin-like C2 97.1 0.0016 3.5E-08 45.6 6.0 67 4-70 48-123 (124)
17 cd04040 C2D_Tricalbin-like C2 97.0 0.0016 3.4E-08 45.5 5.1 65 5-69 44-113 (115)
18 cd04024 C2A_Synaptotagmin-like 97.0 0.0032 6.8E-08 44.5 6.5 65 4-68 46-127 (128)
19 cd04054 C2A_Rasal1_RasA4 C2 do 97.0 0.0029 6.3E-08 45.5 6.2 64 5-68 45-120 (121)
20 cd08377 C2C_MCTP_PRT C2 domain 96.9 0.0044 9.5E-08 43.3 6.5 66 5-70 45-119 (119)
21 cd04022 C2A_MCTP_PRT_plant C2 96.8 0.004 8.6E-08 44.8 6.0 67 5-71 44-127 (127)
22 cd08390 C2A_Synaptotagmin-15-1 96.7 0.003 6.4E-08 44.6 4.6 55 5-59 62-123 (123)
23 cd08689 C2_fungal_Pkc1p C2 dom 96.7 0.0013 2.8E-08 50.3 2.5 48 3-50 42-91 (109)
24 cd08682 C2_Rab11-FIP_classI C2 96.6 0.0081 1.8E-07 43.1 6.1 56 4-59 42-109 (126)
25 cd04015 C2_plant_PLD C2 domain 96.4 0.012 2.6E-07 45.0 6.6 66 5-70 82-158 (158)
26 cd00030 C2 C2 domain. The C2 d 96.4 0.0088 1.9E-07 37.5 4.6 53 4-56 43-101 (102)
27 cd08400 C2_Ras_p21A1 C2 domain 96.4 0.016 3.5E-07 42.2 6.6 67 5-71 45-124 (126)
28 cd08394 C2A_Munc13 C2 domain f 96.2 0.0078 1.7E-07 46.3 4.6 56 5-60 42-102 (127)
29 cd08378 C2B_MCTP_PRT_plant C2 96.2 0.024 5.1E-07 41.2 6.8 65 5-69 40-119 (121)
30 cd04049 C2_putative_Elicitor-r 96.2 0.011 2.4E-07 42.1 4.8 59 5-63 46-112 (124)
31 cd04025 C2B_RasA1_RasA4 C2 dom 96.2 0.02 4.3E-07 40.7 6.1 56 5-60 44-104 (123)
32 cd04033 C2_NEDD4_NEDD4L C2 dom 95.9 0.028 6E-07 40.3 5.9 66 5-70 51-133 (133)
33 cd04016 C2_Tollip C2 domain pr 95.7 0.042 9.2E-07 40.9 6.3 65 5-69 46-121 (121)
34 cd08690 C2_Freud-1 C2 domain f 95.7 0.053 1.2E-06 42.5 7.0 74 4-77 52-144 (155)
35 cd04021 C2_E3_ubiquitin_ligase 95.3 0.06 1.3E-06 39.1 5.9 46 5-50 46-94 (125)
36 cd04051 C2_SRC2_like C2 domain 95.3 0.049 1.1E-06 38.7 5.3 61 4-64 45-124 (125)
37 cd04030 C2C_KIAA1228 C2 domain 95.0 0.046 9.9E-07 38.7 4.2 54 5-58 65-127 (127)
38 cd04050 C2B_Synaptotagmin-like 94.8 0.067 1.5E-06 37.3 4.7 57 5-61 44-104 (105)
39 cd08382 C2_Smurf-like C2 domai 94.6 0.088 1.9E-06 37.9 5.1 55 4-58 44-104 (123)
40 cd08675 C2B_RasGAP C2 domain s 94.4 0.083 1.8E-06 39.3 4.6 57 5-61 46-122 (137)
41 cd00275 C2_PLC_like C2 domain 94.2 0.19 4.1E-06 35.2 5.9 62 5-69 55-127 (128)
42 cd08686 C2_ABR C2 domain in th 94.0 0.21 4.5E-06 38.1 6.2 54 4-57 42-107 (118)
43 cd04019 C2C_MCTP_PRT_plant C2 93.9 0.24 5.1E-06 37.8 6.4 67 4-70 44-132 (150)
44 cd08389 C2A_Synaptotagmin-14_1 93.8 0.11 2.5E-06 37.7 4.3 55 5-59 62-124 (124)
45 cd08387 C2A_Synaptotagmin-8 C2 93.1 0.16 3.4E-06 36.1 4.0 53 5-57 63-122 (124)
46 cd04027 C2B_Munc13 C2 domain s 93.1 0.34 7.5E-06 35.0 5.8 53 5-59 45-112 (127)
47 cd04010 C2B_RasA3 C2 domain se 92.8 0.18 4E-06 38.7 4.3 58 5-62 47-125 (148)
48 cd08521 C2A_SLP C2 domain firs 92.8 0.23 5E-06 34.8 4.4 52 5-56 64-122 (123)
49 cd04013 C2_SynGAP_like C2 doma 92.7 0.42 9.2E-06 37.1 6.2 67 5-71 51-140 (146)
50 cd08385 C2A_Synaptotagmin-1-5- 92.6 0.25 5.3E-06 35.0 4.4 54 5-58 63-123 (124)
51 cd08379 C2D_MCTP_PRT_plant C2 92.5 0.37 8.1E-06 36.1 5.5 55 4-58 46-110 (126)
52 cd04046 C2_Calpain C2 domain p 91.7 0.8 1.7E-05 33.1 6.3 65 5-71 47-123 (126)
53 cd08691 C2_NEDL1-like C2 domai 90.6 0.56 1.2E-05 35.6 4.8 57 5-61 57-123 (137)
54 cd08388 C2A_Synaptotagmin-4-11 90.6 0.41 9E-06 35.0 3.9 55 5-59 64-128 (128)
55 cd08395 C2C_Munc13 C2 domain t 90.4 0.65 1.4E-05 34.6 4.8 57 5-61 50-114 (120)
56 cd04026 C2_PKC_alpha_gamma C2 89.9 0.76 1.6E-05 32.9 4.7 55 5-60 62-122 (131)
57 cd08375 C2_Intersectin C2 doma 89.0 2 4.3E-05 32.0 6.5 65 5-69 59-135 (136)
58 PLN03008 Phospholipase D delta 88.5 1.3 2.7E-05 44.0 6.5 67 5-71 101-178 (868)
59 cd08688 C2_KIAA0528-like C2 do 88.2 1.2 2.5E-05 31.4 4.6 44 5-48 44-95 (110)
60 cd04035 C2A_Rabphilin_Doc2 C2 87.9 0.9 2E-05 32.2 3.9 52 5-56 64-122 (123)
61 cd04011 C2B_Ferlin C2 domain s 87.7 0.92 2E-05 31.8 3.8 49 5-53 44-101 (111)
62 cd04048 C2A_Copine C2 domain f 87.7 1.5 3.2E-05 31.1 5.0 56 4-59 50-114 (120)
63 smart00239 C2 Protein kinase C 87.4 1.4 3E-05 27.9 4.2 48 5-52 47-99 (101)
64 cd04031 C2A_RIM1alpha C2 domai 86.6 1.6 3.4E-05 30.6 4.5 54 4-58 64-125 (125)
65 cd04045 C2C_Tricalbin-like C2 86.3 1.4 3E-05 31.9 4.2 44 5-48 46-93 (120)
66 cd08676 C2A_Munc13-like C2 dom 86.1 1.5 3.2E-05 34.1 4.5 41 5-46 101-143 (153)
67 cd08386 C2A_Synaptotagmin-7 C2 85.8 1.3 2.9E-05 31.2 3.8 55 5-59 63-125 (125)
68 cd04041 C2A_fungal C2 domain f 85.6 1.5 3.2E-05 30.9 3.9 44 5-48 49-100 (111)
69 cd04009 C2B_Munc13-like C2 dom 85.2 1.6 3.5E-05 31.8 4.1 46 5-50 67-121 (133)
70 cd08381 C2B_PI3K_class_II C2 d 85.0 2.1 4.5E-05 31.1 4.6 51 5-55 61-119 (122)
71 cd04029 C2A_SLP-4_5 C2 domain 84.8 1.7 3.8E-05 31.6 4.2 53 5-57 65-124 (125)
72 cd04039 C2_PSD C2 domain prese 81.3 3.1 6.8E-05 29.8 4.2 45 4-48 48-98 (108)
73 KOG0694|consensus 81.0 0.97 2.1E-05 43.8 2.0 66 5-72 52-123 (694)
74 cd08680 C2_Kibra C2 domain fou 80.2 2.9 6.4E-05 31.0 3.9 41 5-45 64-111 (124)
75 cd04028 C2B_RIM1alpha C2 domai 79.6 4.5 9.7E-05 31.3 4.9 56 5-60 79-139 (146)
76 cd08685 C2_RGS-like C2 domain 79.5 3.6 7.9E-05 29.9 4.2 50 4-53 59-115 (119)
77 cd04038 C2_ArfGAP C2 domain pr 76.2 8.5 0.00019 29.3 5.5 60 4-64 44-107 (145)
78 cd04037 C2E_Ferlin C2 domain f 74.1 5 0.00011 29.0 3.6 42 5-46 46-92 (124)
79 cd08402 C2B_Synaptotagmin-1 C2 72.5 4.3 9.3E-05 29.4 2.9 26 5-30 64-93 (136)
80 cd04018 C2C_Ferlin C2 domain t 72.3 8.7 0.00019 29.7 4.8 46 5-50 58-109 (151)
81 cd08404 C2B_Synaptotagmin-4 C2 72.0 4.7 0.0001 29.3 3.0 40 5-44 64-110 (136)
82 cd08393 C2A_SLP-1_2 C2 domain 71.9 7.9 0.00017 28.0 4.2 41 5-45 65-112 (125)
83 cd00276 C2B_Synaptotagmin C2 d 66.7 8.3 0.00018 27.1 3.3 41 4-44 62-109 (134)
84 cd04047 C2B_Copine C2 domain s 66.6 13 0.00027 25.7 4.2 44 4-48 49-101 (110)
85 cd08405 C2B_Synaptotagmin-7 C2 64.5 9.6 0.00021 27.5 3.4 26 5-30 64-93 (136)
86 PLN03200 cellulose synthase-in 64.1 15 0.00033 39.8 5.9 67 5-71 2023-2101(2102)
87 cd08403 C2B_Synaptotagmin-3-5- 63.5 8.6 0.00019 27.7 3.0 27 5-31 63-93 (134)
88 cd04017 C2D_Ferlin C2 domain f 62.8 32 0.00068 25.0 5.9 66 5-70 45-132 (135)
89 PF00168 C2: C2 domain; Inter 61.4 11 0.00025 23.5 3.0 27 4-30 45-73 (85)
90 cd08410 C2B_Synaptotagmin-17 C 60.3 6.9 0.00015 28.7 2.0 27 5-31 63-93 (135)
91 cd04020 C2B_SLP_1-2-3-4 C2 dom 59.6 14 0.0003 28.4 3.7 45 5-49 76-128 (162)
92 cd08384 C2B_Rabphilin_Doc2 C2 57.7 9.7 0.00021 27.2 2.4 26 5-30 62-91 (133)
93 cd08392 C2A_SLP-3 C2 domain fi 57.6 10 0.00023 27.9 2.6 26 5-30 65-94 (128)
94 cd04032 C2_Perforin C2 domain 56.1 12 0.00026 28.1 2.7 27 5-31 71-100 (127)
95 cd08409 C2B_Synaptotagmin-15 C 50.9 16 0.00035 26.9 2.7 28 4-31 62-93 (137)
96 cd08408 C2B_Synaptotagmin-14_1 38.5 36 0.00078 25.4 2.9 27 4-30 64-94 (138)
97 PF05914 RIB43A: RIB43A; Inte 38.5 16 0.00035 32.7 1.2 28 76-111 20-49 (379)
98 PLN02352 phospholipase D epsil 37.8 95 0.0021 30.8 6.3 68 4-71 56-131 (758)
99 PF07661 MORN_2: MORN repeat v 34.2 67 0.0014 16.3 2.8 22 50-71 1-22 (22)
100 cd08406 C2B_Synaptotagmin-12 C 33.5 34 0.00073 25.7 2.1 26 5-30 64-93 (136)
101 PLN02270 phospholipase D alpha 32.4 1.4E+02 0.003 30.0 6.4 72 5-78 72-154 (808)
102 cd08692 C2B_Tac2-N C2 domain s 30.2 56 0.0012 25.3 2.8 23 5-27 64-89 (135)
103 cd08407 C2B_Synaptotagmin-13 C 29.2 56 0.0012 24.8 2.7 27 5-31 66-96 (138)
104 TIGR03711 acc_sec_asp3 accesso 28.5 54 0.0012 25.9 2.5 26 48-73 64-91 (135)
105 PF15432 Sec-ASP3: Accessory S 28.4 60 0.0013 25.2 2.7 31 43-73 48-80 (128)
106 KOG3916|consensus 26.4 14 0.00031 33.7 -1.2 43 63-105 153-208 (372)
107 PF02001 DUF134: Protein of un 24.3 38 0.00083 25.6 1.0 19 96-114 63-81 (106)
108 PF08722 Tn7_Tnp_TnsA_N: TnsA 24.1 54 0.0012 22.4 1.6 35 61-95 48-84 (88)
109 KOG0696|consensus 24.1 74 0.0016 30.8 3.0 44 5-50 229-280 (683)
110 cd08556 GDPD Glycerophosphodie 22.8 81 0.0017 23.1 2.4 45 11-72 29-73 (189)
111 PF01722 BolA: BolA-like prote 21.6 1.5E+02 0.0033 20.7 3.5 30 60-89 25-54 (76)
112 PF10358 NT-C2: N-terminal C2 20.9 3.3E+02 0.0071 19.5 6.6 63 7-69 53-134 (143)
No 1
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=100.00 E-value=4.9e-38 Score=233.37 Aligned_cols=63 Identities=63% Similarity=1.182 Sum_probs=61.5
Q ss_pred cccccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcccCcceeeecccceeEEEEEEe
Q psy3348 3 SGNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKF 69 (147)
Q Consensus 3 ~s~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF 69 (147)
+|+|||||+|+|+|||||||||+|||||||||||++|||||| .+|+++++|||||.||+||||
T Consensus 30 ~s~q~WDQ~Fti~LdRsRELEI~VywrD~RslCav~~lrLEd----~~~~~~~~lepqg~l~~ev~f 92 (98)
T cd08687 30 KSNQAWDQSFTLELERSRELEIAVYWRDWRSLCAVKFLKLED----ERHEVQLDMEPQLCLVAELTF 92 (98)
T ss_pred cccccccceeEEEeecccEEEEEEEEecchhhhhheeeEhhh----hcccceeccccccEEEEEEEe
Confidence 689999999999999999999999999999999999999999 588999999999999999999
No 2
>KOG0694|consensus
Probab=99.70 E-value=2.8e-18 Score=159.47 Aligned_cols=115 Identities=34% Similarity=0.574 Sum_probs=108.9
Q ss_pred ccccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcccCcceeeecccceeEEEEEEeeCCccCCCchhhHH
Q psy3348 4 GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQ 83 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF~nPvieR~pkLqRQ 83 (147)
...+|||+|...| ++|++|+.|+|+|++++|+.++++++++++|. ++||||.+++ ++|.+| .|.+++++|
T Consensus 170 t~Cs~C~kFi~gL-~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~------n~e~q~~~~~-~~~~~P--hrf~~~~~q 239 (694)
T KOG0694|consen 170 TFCSWCQKFIWGL-RKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNL------NSEPQGFLFE-FTFRNP--HRFVKLNRQ 239 (694)
T ss_pred chhhhhhhheecc-CCCceEEeeeeehHhhhhHHHHHHhccCcCcc------CcCCcccccc-ccccCC--Ccchhhhcc
Confidence 4568999999999 99999999999999999999999999999998 8999999999 999999 899999999
Q ss_pred HHHH-HhhCCCCCCcccccchHhhHHH-----HHhhhCCCCccCCCCCCCC
Q psy3348 84 RKIF-KQQGKNFPRANQMNINVATWGR-----LLKRSAPSIQNNRRPLPSL 128 (147)
Q Consensus 84 kriF-k~kGk~f~Ra~qmninvatW~R-----Ll~~~~p~~~~~~~~~~~~ 128 (147)
+++| ++.|+.+.|..+++++..+|++ +.++..|.|+.+.++++..
T Consensus 240 ~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~t~~~~~ 290 (694)
T KOG0694|consen 240 RPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGSRTFSPEI 290 (694)
T ss_pred CccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCCCchhhhhhh
Confidence 9999 8999999999999999999999 8999999998888877744
No 3
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.75 E-value=3.1e-08 Score=71.74 Aligned_cols=66 Identities=23% Similarity=0.483 Sum_probs=59.3
Q ss_pred cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhc--ccCcceeeecccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFID--DIRHGMALQLEPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLD--n~~h~~~l~LEPQG~LfaevtF~ 70 (147)
...||+.|++.+...+.|+|.||.+|. ..++|...+.|.++++ ...+..+++|+|+|.|++++++.
T Consensus 59 ~P~Wne~f~~~v~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G~l~l~~~~~ 129 (132)
T cd04014 59 SPVWNEEFTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQGKLHVKIELK 129 (132)
T ss_pred CCCcceeEEEEcCCCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCcEEEEEEEEe
Confidence 467999999999999999999987654 4689999999999999 67799999999999999999874
No 4
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.99 E-value=2.7e-05 Score=54.60 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=57.5
Q ss_pred ccccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc-eeEEEEEEee
Q psy3348 4 GNQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ-GLLFAEIKFL 70 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ-G~LfaevtF~ 70 (147)
....|++.|.+++.. .+.|+|.||-+|. ..+.|..-+.|.++..+..+..+++|+|- |.|+++++|.
T Consensus 43 ~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~ 115 (116)
T cd08376 43 LNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT 115 (116)
T ss_pred CCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence 356799999999855 6899999997665 36678888999999999999999999988 9999999884
No 5
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.96 E-value=3.7e-05 Score=54.67 Aligned_cols=67 Identities=24% Similarity=0.455 Sum_probs=55.6
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcc---cCcceeeecccceeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDD---IRHGMALQLEPQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn---~~h~~~l~LEPQG~LfaevtF~n 71 (147)
...|++.|.|.+.. .+.|.|.||-+|. -.++|...+.|.+.... ..+.++++|+|+|.+++++++.+
T Consensus 48 ~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g~i~l~~~~~~ 122 (126)
T cd04043 48 NPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQGRLLLRVSMEG 122 (126)
T ss_pred CCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCCeEEEEEEEee
Confidence 45799999999987 5889999986654 45789999999887543 46789999999999999999864
No 6
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=97.89 E-value=3.9e-05 Score=55.80 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=56.6
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc-------ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP-------QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP-------QG~LfaevtF 69 (147)
..-|++.|.|++.. ++.|+|.||-.|. ..++|...+.|+++..+.....+++|+| +|.|++++.|
T Consensus 46 ~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 46 CPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 45799999999976 5999999986554 3689999999999998888899999999 8999999875
No 7
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=97.80 E-value=0.00011 Score=52.88 Aligned_cols=69 Identities=25% Similarity=0.464 Sum_probs=58.4
Q ss_pred cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecc--------cceeEEEEEEeeCC
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLE--------PQGLLFAEIKFLNP 72 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LE--------PQG~LfaevtF~nP 72 (147)
...|++.|.+++.. +.+|.|.||-+|.. .+.|-..+.|.+++.+.....+++|. .+|.|++++.|.+|
T Consensus 43 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 43 NPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 56899999999965 78999999966653 58899999999999987777777776 47999999999988
Q ss_pred c
Q psy3348 73 M 73 (147)
Q Consensus 73 v 73 (147)
-
T Consensus 123 ~ 123 (126)
T cd08678 123 A 123 (126)
T ss_pred c
Confidence 5
No 8
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.76 E-value=9.7e-05 Score=52.48 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=55.5
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcc-cCcceeeecc--cceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDD-IRHGMALQLE--PQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn-~~h~~~l~LE--PQG~LfaevtF~ 70 (147)
...|+|.|.+.+.- .++|+|.|+-.|. ....|...+.|.++++. .....+++|+ |+|.|.+++.|.
T Consensus 37 nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i~~~~~~~ 109 (111)
T cd04052 37 NPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWK 109 (111)
T ss_pred CCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEEEEEEEEe
Confidence 45799999998864 5779999986665 57889999999999985 5568899999 999999999885
No 9
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=97.75 E-value=0.00012 Score=52.01 Aligned_cols=65 Identities=20% Similarity=0.363 Sum_probs=55.1
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccc--eeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQ--GLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQ--G~LfaevtF 69 (147)
...||++|.+.+.. ...|+|.||=+|. ..+.|-..+.|.++..+..+...++|+|| |.|++|+.+
T Consensus 47 nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 47 NPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred CCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 57899999998865 4468999995554 45788889999999999999999999998 999999876
No 10
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=97.70 E-value=0.00017 Score=50.34 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=55.5
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeeccc--ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEP--QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEP--QG~LfaevtF 69 (147)
...|++.|.+.+.. .+.|+|.||-+|. -.+.|...+.|.+++++..+...++|++ +|.|++++.|
T Consensus 51 ~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 51 NPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 45799999998865 7899999986653 4678889999999999888999999997 9999998764
No 11
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=97.58 E-value=0.00027 Score=49.66 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=54.0
Q ss_pred cccccceeeeeecc--cceeeEEEEEecCc--ccccceeeehhhhhcccCcceeeecccc----eeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDWR--SLCGVKFLRLEEFIDDIRHGMALQLEPQ----GLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~R--sLCav~flRLEdfLDn~~h~~~l~LEPQ----G~LfaevtF 69 (147)
...|++.|.+++.. .+.|.|.||-+|.. .+.|-..+.|.+++.......+++|++. |.|+++++|
T Consensus 46 nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 46 HPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred CCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 67899999999965 67899999966654 6788888999999887777888888764 889999887
No 12
>KOG1452|consensus
Probab=97.48 E-value=4.3e-05 Score=68.58 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=61.3
Q ss_pred cccccceeeeeecccceeeEEEE-EecC--cccccceeeehhhhhc-ccCcceeeecccceeEEEEEEeeCCc-cCCC
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVY-WRDW--RSLCGVKFLRLEEFID-DIRHGMALQLEPQGLLFAEIKFLNPM-ISRK 77 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~Vy-wrD~--RsLCav~flRLEdfLD-n~~h~~~l~LEPQG~LfaevtF~nPv-ieR~ 77 (147)
+.+|+.+|.+|+--+..|.+-|| |.+- -.||..+.|-+-.++- +..|.++|.|||.|.+++.+.|.||. +-|+
T Consensus 98 ~f~w~e~F~~Dvv~~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~lePrgq~~~r~~~~Dp~av~rR 175 (442)
T KOG1452|consen 98 GFAWAEDFKHDVVNIEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDRQSPDRVVALYLEPRGQPPLRLPLADPEAVTRR 175 (442)
T ss_pred CccchhhceeecccceeeeEEEeecCchhhccccccchhhhhhhhhcCCcceeeeecccCCCCceecccCChHHHhhc
Confidence 46899999999999999999999 4444 4899999776665554 47799999999999999999999997 4443
No 13
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=97.36 E-value=0.00066 Score=47.23 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=49.6
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC-cccccceeeehhhhhcccCcceeeeccc-------ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW-RSLCGVKFLRLEEFIDDIRHGMALQLEP-------QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~-RsLCav~flRLEdfLDn~~h~~~l~LEP-------QG~LfaevtF 69 (147)
...|++.|.+++.. .++|+|.|+-+|. ....+++-+.|.+.........+++|+| .|.|++++.|
T Consensus 41 ~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 41 NPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 46799999999877 3677777764432 2335677777777776777889999999 7999999987
No 14
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=97.33 E-value=0.0011 Score=47.23 Aligned_cols=66 Identities=23% Similarity=0.436 Sum_probs=55.2
Q ss_pred cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeeccc------ceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEP------QGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEP------QG~LfaevtF~ 70 (147)
...|+|.|.+.+.. ...|.|.||=+|.- ...|-..+-|.++.++..+...++|++ .|.|.+.++|.
T Consensus 45 nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 45 NPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred CCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 56899999999876 78899999966553 478999999999999999999999963 37888888874
No 15
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.17 E-value=0.0023 Score=45.90 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=57.4
Q ss_pred ccccccceeeeeec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc------cceeEEEEEEee
Q psy3348 4 GNQAWDQRFSIDLD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE------PQGLLFAEIKFL 70 (147)
Q Consensus 4 s~q~WDQ~F~I~Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE------PQG~LfaevtF~ 70 (147)
....||+.|.+++. ..+.|+|.||=.|. ..+.|-..+-|.+++.+......++|+ .+|.|++++.|.
T Consensus 37 ~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~ 116 (127)
T cd08373 37 LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQ 116 (127)
T ss_pred cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEe
Confidence 35679999999995 46899999995543 256888999999999998888888887 358899999998
Q ss_pred CCc
Q psy3348 71 NPM 73 (147)
Q Consensus 71 nPv 73 (147)
.|-
T Consensus 117 ~~~ 119 (127)
T cd08373 117 PPD 119 (127)
T ss_pred CCC
Confidence 764
No 16
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.14 E-value=0.0016 Score=45.57 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=53.2
Q ss_pred ccccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcccCcc-eeeec----ccceeEEEEEEee
Q psy3348 4 GNQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHG-MALQL----EPQGLLFAEIKFL 70 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~-~~l~L----EPQG~LfaevtF~ 70 (147)
....|+|.|.+.+.. .+.|.|.||-+|.. .+.|...+.|.++++...+. ....+ .|.|.|.++++|.
T Consensus 48 ~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 48 SNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF 123 (124)
T ss_pred CCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence 356899999988865 88999999966543 68999999999999986653 43333 3789999999985
No 17
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.03 E-value=0.0016 Score=45.47 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=53.6
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF 69 (147)
...|++.|.+.+.. .+.|+|.||-+|- -.++|-..+.|.++.++....+.++|+|+|.+-.-+-|
T Consensus 44 ~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 44 NPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred CCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 56899999999865 4789999997653 34899999999999999999999999998876554444
No 18
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=97.00 E-value=0.0032 Score=44.45 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=50.4
Q ss_pred ccccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhh---cccCcceeeeccc---------ceeEEEE
Q psy3348 4 GNQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFI---DDIRHGMALQLEP---------QGLLFAE 66 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfL---Dn~~h~~~l~LEP---------QG~Lfae 66 (147)
....||+.|.+.+.. .+.|+|.||=+|. -.++|...+.|.+++ ++..+...++|+| +|.|.++
T Consensus 46 ~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~ 125 (128)
T cd04024 46 LNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQ 125 (128)
T ss_pred cCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEE
Confidence 356799999999974 8899999986654 367899999999998 3445667777764 5788777
Q ss_pred EE
Q psy3348 67 IK 68 (147)
Q Consensus 67 vt 68 (147)
++
T Consensus 126 ~~ 127 (128)
T cd04024 126 FS 127 (128)
T ss_pred EE
Confidence 65
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=96.97 E-value=0.0029 Score=45.53 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=53.2
Q ss_pred cccccceeeeeeccc-ceeeEEEEEecC---cccccceeeehhhhhcc-cCcceeeeccc-------ceeEEEEEE
Q psy3348 5 NQAWDQRFSIDLDKS-RELEIGVYWRDW---RSLCGVKFLRLEEFIDD-IRHGMALQLEP-------QGLLFAEIK 68 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs-RELEI~VywrD~---RsLCav~flRLEdfLDn-~~h~~~l~LEP-------QG~Lfaevt 68 (147)
...|++.|.+.+... +.|+|.||-.|. -.++|...+.++++... .....+++|+| .|.++++++
T Consensus 45 nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 45 NPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 467999999999765 899999986664 36899999999998864 34788999999 899998875
No 20
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=96.90 E-value=0.0044 Score=43.34 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=49.4
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec-----ccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL-----EPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L-----EPQG~LfaevtF~ 70 (147)
...||+.|.+.+.. .+.|.|.||=+|. -.+.|...+.|.++.....+-..|.. .++|.+++++.|.
T Consensus 45 nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 45 NPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEeC
Confidence 56799999999977 7899999985543 25678888899998766554333322 2689999999873
No 21
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.84 E-value=0.004 Score=44.81 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=51.5
Q ss_pred cccccceeeeeeccc-----ceeeEEEEEecC----cccccceeeehhhhh-cccCcceeeecc-------cceeEEEEE
Q psy3348 5 NQAWDQRFSIDLDKS-----RELEIGVYWRDW----RSLCGVKFLRLEEFI-DDIRHGMALQLE-------PQGLLFAEI 67 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs-----RELEI~VywrD~----RsLCav~flRLEdfL-Dn~~h~~~l~LE-------PQG~Lfaev 67 (147)
...||+.|.+.+... ..|+|.||-.|. ..+-|-..+.|+++. ++..+..+++|+ ++|-|.+++
T Consensus 44 nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 123 (127)
T cd04022 44 NPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKV 123 (127)
T ss_pred CCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEE
Confidence 467999999998743 468999986542 346688889999998 567778888888 478888888
Q ss_pred EeeC
Q psy3348 68 KFLN 71 (147)
Q Consensus 68 tF~n 71 (147)
-|.|
T Consensus 124 ~~~~ 127 (127)
T cd04022 124 YITD 127 (127)
T ss_pred EEcC
Confidence 8765
No 22
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.73 E-value=0.003 Score=44.58 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=47.3
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP 59 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP 59 (147)
...||+.|++++.. .+.|+|.||-.|. ..+.|-..+.|.++.....+..+++|||
T Consensus 62 ~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 62 NPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 46799999999976 4689999997654 3678889999999999999999999997
No 23
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.67 E-value=0.0013 Score=50.29 Aligned_cols=48 Identities=35% Similarity=0.638 Sum_probs=40.4
Q ss_pred cccccccceeeeeecccceeeEEEEEe--cCcccccceeeehhhhhcccC
Q psy3348 3 SGNQAWDQRFSIDLDKSRELEIGVYWR--DWRSLCGVKFLRLEEFIDDIR 50 (147)
Q Consensus 3 ~s~q~WDQ~F~I~LeRsRELEI~Vywr--D~RsLCav~flRLEdfLDn~~ 50 (147)
|-...|++.|.|++|++.|+||.||=+ |.--=-|+..+||.|+.+..|
T Consensus 42 srnd~WnE~F~i~Vdk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~Ee~R 91 (109)
T cd08689 42 SRNDRWNEDFEIPVEKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAEEIR 91 (109)
T ss_pred CCCCcccceEEEEecCCcEEEEEEEeCCCCeecceeeehhhHHHHHHHHH
Confidence 346789999999999999999999977 445556788899999999844
No 24
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=96.59 E-value=0.0081 Score=43.13 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=45.5
Q ss_pred ccccccceeeeeecc-------cceeeEEEEEecC---cccccceeeehhhhh--cccCcceeeeccc
Q psy3348 4 GNQAWDQRFSIDLDK-------SRELEIGVYWRDW---RSLCGVKFLRLEEFI--DDIRHGMALQLEP 59 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR-------sRELEI~VywrD~---RsLCav~flRLEdfL--Dn~~h~~~l~LEP 59 (147)
....||+.|.+++.. .+.|+|.||-+|. ..+.|-..+-|.++. ++.....+++|++
T Consensus 42 ~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 42 TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 456899999998855 6789999998875 357889999999998 5666778888875
No 25
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=96.45 E-value=0.012 Score=45.01 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=53.3
Q ss_pred cccccceeeeee-cccceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecc--------cceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDL-DKSRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLE--------PQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~L-eRsRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LE--------PQG~LfaevtF~ 70 (147)
...|+|.|.|.+ +-...|+|.|+..|. ..+.|...+.|+++........+++|+ +.|.|++.+.|.
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 568999999986 345789999997764 457889999999999887777788875 357999999884
No 26
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=96.38 E-value=0.0088 Score=37.48 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=41.8
Q ss_pred ccccccceeeeeecc--cceeeEEEEEecCc---ccccceeeehhhhh-cccCcceeee
Q psy3348 4 GNQAWDQRFSIDLDK--SRELEIGVYWRDWR---SLCGVKFLRLEEFI-DDIRHGMALQ 56 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR--sRELEI~VywrD~R---sLCav~flRLEdfL-Dn~~h~~~l~ 56 (147)
....|++.|.+++.. ...|+|.||..+.. .+-|...+.|.++. .+..+..+++
T Consensus 43 ~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 43 LNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred CCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceec
Confidence 457899999999997 99999999998763 67788888888888 4455555444
No 27
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=96.38 E-value=0.016 Score=42.18 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=52.2
Q ss_pred cccccceeeeeeccc--ceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecccc--------eeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDKS--RELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEPQ--------GLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs--RELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEPQ--------G~LfaevtF~n 71 (147)
...|++.|.++.... +.|.|.||=.|.. ..=|...+.|+++........+++|+|. |.|.+.++|..
T Consensus 45 nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 45 NPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 457999999985443 5688888754432 3556777889998888888899999886 89999999964
No 28
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.24 E-value=0.0078 Score=46.28 Aligned_cols=56 Identities=21% Similarity=0.509 Sum_probs=47.7
Q ss_pred cccccceeeeeecccce-eeEEEEEec--Ccccccceeeehhhhhcc--cCcceeeecccc
Q psy3348 5 NQAWDQRFSIDLDKSRE-LEIGVYWRD--WRSLCGVKFLRLEEFIDD--IRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRE-LEI~VywrD--~RsLCav~flRLEdfLDn--~~h~~~l~LEPQ 60 (147)
+..|||.|.+.+++..+ |+|.|+=+| .-.+.|-.-+-|.+++.. .-.+.+++|+|.
T Consensus 42 nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 42 QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 67899999999987655 999999888 577899999999999955 445899999985
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=96.21 E-value=0.024 Score=41.24 Aligned_cols=65 Identities=26% Similarity=0.392 Sum_probs=51.4
Q ss_pred cccccceeeeeec--ccceeeEEEEEecC--cccccceeeehhhhhccc-----Ccceeeeccc------ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLD--KSRELEIGVYWRDW--RSLCGVKFLRLEEFIDDI-----RHGMALQLEP------QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~Le--RsRELEI~VywrD~--RsLCav~flRLEdfLDn~-----~h~~~l~LEP------QG~LfaevtF 69 (147)
...||+.|.+.+. ....|+|.||=+|. ..++|-..+.|.++..+. .+..+.+|++ .|-|.+.+.|
T Consensus 40 nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 40 NPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred CCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 5679999999997 47889999997775 578899999999987532 2557778876 4778888777
No 30
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=96.17 E-value=0.011 Score=42.06 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=49.5
Q ss_pred cccccceeeeeeccc-----ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeE
Q psy3348 5 NQAWDQRFSIDLDKS-----RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs-----RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~L 63 (147)
...|++.|.+.+... +.|.|.||-+|. -.+-|...+.|.+++.+.....+++|.|.|.=
T Consensus 46 nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~ 112 (124)
T cd04049 46 NPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYN 112 (124)
T ss_pred CCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccceE
Confidence 568999999999886 789999996653 34577888899999999999999999998753
No 31
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=96.16 E-value=0.02 Score=40.70 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=45.2
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|++.|.+.+.. ...|.|.||-+|. -.+.|...+.|.++.....+..+.+|+|.
T Consensus 44 nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 44 YPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred CCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCC
Confidence 46799999999977 4679999985553 35788999999999887777888888874
No 32
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.91 E-value=0.028 Score=40.26 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=51.1
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccC------cceeeecc-------cceeEEEEE
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR------HGMALQLE-------PQGLLFAEI 67 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~------h~~~l~LE-------PQG~Lfaev 67 (147)
...|++.|.+++.. .+.|.|.||=.|. ..+.|...+.|.++..... +.-+.+|+ +.|.|.+++
T Consensus 51 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~ 130 (133)
T cd04033 51 NPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYM 130 (133)
T ss_pred CCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEE
Confidence 46799999999976 7789999996654 2567778889999887533 44666777 579999999
Q ss_pred Eee
Q psy3348 68 KFL 70 (147)
Q Consensus 68 tF~ 70 (147)
.|.
T Consensus 131 ~~~ 133 (133)
T cd04033 131 AYL 133 (133)
T ss_pred eeC
Confidence 984
No 33
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=95.69 E-value=0.042 Score=40.87 Aligned_cols=65 Identities=9% Similarity=0.184 Sum_probs=51.4
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehh-hhhcccCcceeeeccc------ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLE-EFIDDIRHGMALQLEP------QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLE-dfLDn~~h~~~l~LEP------QG~LfaevtF 69 (147)
...|+|.|.+.+.- ..+|.|.||=.|- -.+.|-..+.|. .++.++.-..+++|++ -|.+++++.|
T Consensus 46 nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 46 NPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 67899999999965 5789999997765 246777888896 5667777788888876 4888888876
No 34
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=95.65 E-value=0.053 Score=42.50 Aligned_cols=74 Identities=18% Similarity=0.411 Sum_probs=60.3
Q ss_pred ccccccceeeeeeccc----------ceeeEEEEEecC--c--ccccceeeehhhhhcccCcceeeecc-----cceeEE
Q psy3348 4 GNQAWDQRFSIDLDKS----------RELEIGVYWRDW--R--SLCGVKFLRLEEFIDDIRHGMALQLE-----PQGLLF 64 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRs----------RELEI~VywrD~--R--sLCav~flRLEdfLDn~~h~~~l~LE-----PQG~Lf 64 (147)
.+..|+++|++++.+. +-|.|+||-+|. | .+=|-..+.|+++..+.....+++|. =.|.|.
T Consensus 52 lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~ 131 (155)
T cd08690 52 NSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLE 131 (155)
T ss_pred CCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEE
Confidence 4568999999999765 459999998874 4 77888999999988875555588876 478999
Q ss_pred EEEEeeCCccCCC
Q psy3348 65 AEIKFLNPMISRK 77 (147)
Q Consensus 65 aevtF~nPvieR~ 77 (147)
++|+-.+|..+.+
T Consensus 132 v~ir~r~p~~~~~ 144 (155)
T cd08690 132 VKVRLREPLTGKQ 144 (155)
T ss_pred EEEEecCCCccce
Confidence 9999999987654
No 35
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=95.32 E-value=0.06 Score=39.12 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=38.9
Q ss_pred cccccceeeeeecccceeeEEEEEecCc---ccccceeeehhhhhcccC
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIR 50 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~R---sLCav~flRLEdfLDn~~ 50 (147)
...|++.|.|.+...+.|.|.||=.|.- .+.|-..+.|.+++.++.
T Consensus 46 ~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~ 94 (125)
T cd04021 46 NPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHN 94 (125)
T ss_pred CCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcC
Confidence 5689999999999999999999955442 578899999999998644
No 36
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=95.31 E-value=0.049 Score=38.70 Aligned_cols=61 Identities=30% Similarity=0.487 Sum_probs=45.6
Q ss_pred ccccccceeeeeeccc------ceeeEEEEEecC---cccccceeeehhhhhcccC-----cceeeecc-----cceeEE
Q psy3348 4 GNQAWDQRFSIDLDKS------RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR-----HGMALQLE-----PQGLLF 64 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRs------RELEI~VywrD~---RsLCav~flRLEdfLDn~~-----h~~~l~LE-----PQG~Lf 64 (147)
....||+.|.|++... ..|.|.||-+|. -.+=|-..+.|.|++.... +..+.+|+ |+|.|+
T Consensus 45 ~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 45 TNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred CCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence 3568999999999665 789999996554 2355778899999998754 35666776 667665
No 37
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=94.95 E-value=0.046 Score=38.71 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=41.9
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeecc
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQLE 58 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~LE 58 (147)
...||++|.+++... +.|+|.|+..|. ..+-|...+.|.++..++.+..+..|+
T Consensus 65 nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 65 NPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 567999999999654 789999998764 246788888999986667776666654
No 38
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.81 E-value=0.067 Score=37.34 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=43.5
Q ss_pred cccccceeeeeecc--cceeeEEEEEecCcccccceeeehhhhhccc--Ccceeeecccce
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDWRSLCGVKFLRLEEFIDDI--RHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~RsLCav~flRLEdfLDn~--~h~~~l~LEPQG 61 (147)
..-||+.|.+.+.. ...|.|.|+=.|.-.+=|-..+.|.+++... ...-+++|++.|
T Consensus 44 nP~Wne~f~f~v~~~~~~~l~v~v~d~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 44 NPVWEEGFTFLVRNPENQELEIEVKDDKTGKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCcccceEEEEeCCCCCCEEEEEEEECCCCCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 56799999999985 6679999995554344566678899998764 467788888777
No 39
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=94.60 E-value=0.088 Score=37.92 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=42.6
Q ss_pred ccccccceeeeeecccceeeEEEEEecCc-----ccccceeeehhhhhcccC-cceeeecc
Q psy3348 4 GNQAWDQRFSIDLDKSRELEIGVYWRDWR-----SLCGVKFLRLEEFIDDIR-HGMALQLE 58 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRsRELEI~VywrD~R-----sLCav~flRLEdfLDn~~-h~~~l~LE 58 (147)
....||+.|.|.+.....|.|.||-+|.- .+.|...+.|.++++... ..-.++|+
T Consensus 44 ~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~ 104 (123)
T cd08382 44 LDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLR 104 (123)
T ss_pred CCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEee
Confidence 35689999999999999999999966542 367888999999998643 24455553
No 40
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=94.39 E-value=0.083 Score=39.34 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=45.6
Q ss_pred cccccceeeeeeccc-----------------ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348 5 NQAWDQRFSIDLDKS-----------------RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs-----------------RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG 61 (147)
...|+|.|.+++... ..|+|.||=+|. -.+.|-..+.|.+++....+..+++|+|+|
T Consensus 46 nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 46 NPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred CCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 567999999998775 478888885543 355677788899988777788999999986
No 41
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=94.21 E-value=0.19 Score=35.24 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=45.2
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeec-------ccceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQL-------EPQGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~L-------EPQG~LfaevtF 69 (147)
...||++|.+++.. ..-|.|.||-.|. ..+.|...+.|.++.+..++ ++| ...|.|++.+.+
T Consensus 55 ~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~~~---~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 55 NPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRH---VPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCceEE---EEecCCCCCCCcceeEEEEEEE
Confidence 56799999999653 3468999996654 57888889999998665433 333 445788888765
No 42
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=94.00 E-value=0.21 Score=38.07 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=40.5
Q ss_pred ccccccceeeeeecccceeeEEEEEec----------Ccccccceeeeh--hhhhcccCcceeeec
Q psy3348 4 GNQAWDQRFSIDLDKSRELEIGVYWRD----------WRSLCGVKFLRL--EEFIDDIRHGMALQL 57 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRsRELEI~VywrD----------~RsLCav~flRL--EdfLDn~~h~~~l~L 57 (147)
....||+.|.|+|+-++.|-|.||..+ --.+||-+.+.| +.|-|+.-+..++.|
T Consensus 42 lnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 42 TEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred CCCccceEEEEEeCCCCEEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 456899999999999999999999752 235796666655 677777555555555
No 43
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=93.93 E-value=0.24 Score=37.82 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=49.5
Q ss_pred ccccccceeeeeec--ccceeeEEEEEecC---cccccceeeehhhhhcc----cCcceeeecccc-------------e
Q psy3348 4 GNQAWDQRFSIDLD--KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD----IRHGMALQLEPQ-------------G 61 (147)
Q Consensus 4 s~q~WDQ~F~I~Le--RsRELEI~VywrD~---RsLCav~flRLEdfLDn----~~h~~~l~LEPQ-------------G 61 (147)
....|||.|.+.+. ....|.|.|+-+|. ..+=|-..+.|.++... .....+++|++. |
T Consensus 44 ~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g 123 (150)
T cd04019 44 GNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFAS 123 (150)
T ss_pred CCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccc
Confidence 35689999999984 35689999986664 24567778889998743 345777888854 7
Q ss_pred eEEEEEEee
Q psy3348 62 LLFAEIKFL 70 (147)
Q Consensus 62 ~LfaevtF~ 70 (147)
.|.+++.|.
T Consensus 124 ~l~l~i~~~ 132 (150)
T cd04019 124 RIHLRLCLD 132 (150)
T ss_pred cEEEEEEec
Confidence 788888875
No 44
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=93.80 E-value=0.11 Score=37.71 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=45.1
Q ss_pred cccccceeeee-ecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348 5 NQAWDQRFSID-LDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP 59 (147)
Q Consensus 5 ~q~WDQ~F~I~-LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP 59 (147)
...||++|.++ +.. .+.|.+.|+-.|. ..+.|-..+-|.++--+.....+++|+|
T Consensus 62 nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 62 NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 45799999998 554 5678899997764 4578999999999966788999999998
No 45
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=93.09 E-value=0.16 Score=36.13 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=42.1
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL 57 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L 57 (147)
...||+.|.+++... +.|+|.|+=+|. ..+.|...+.|.++..++.+..+.+|
T Consensus 63 ~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 63 NPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 457999999998754 589999986654 35788888999999887777777765
No 46
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=93.06 E-value=0.34 Score=35.04 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=38.4
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--------------cccccceeeehhhhhcccCcceeeeccc
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--------------RSLCGVKFLRLEEFIDDIRHGMALQLEP 59 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--------------RsLCav~flRLEdfLDn~~h~~~l~LEP 59 (147)
...|++.|.+.+.. .+.|.|+||=.|. ..+-|...+.|.++- ..+.++.+|+|
T Consensus 45 ~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~ 112 (127)
T cd04027 45 NPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEK 112 (127)
T ss_pred CCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECcc
Confidence 45699999998854 4689999986652 345666677777753 45678888887
No 47
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=92.83 E-value=0.18 Score=38.66 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=42.7
Q ss_pred cccccceeeeeec-----------------ccceeeEEEEEecCc---ccccceeeehhhhhcc-cCcceeeeccccee
Q psy3348 5 NQAWDQRFSIDLD-----------------KSRELEIGVYWRDWR---SLCGVKFLRLEEFIDD-IRHGMALQLEPQGL 62 (147)
Q Consensus 5 ~q~WDQ~F~I~Le-----------------RsRELEI~VywrD~R---sLCav~flRLEdfLDn-~~h~~~l~LEPQG~ 62 (147)
...|||.|.+++. ....|+|.|+-+|.. .+=|-.-|-|.++... .....+++|+|++.
T Consensus 47 nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 47 NPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred CCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 4579999999994 346899999866542 3445555677887766 56788999999874
No 48
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=92.79 E-value=0.23 Score=34.81 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=37.8
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeee
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQ 56 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~ 56 (147)
...|++.|.+++.. .+.|+|.|+-.|. ..+.|-..+.|.++.-......+.+
T Consensus 64 ~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 122 (123)
T cd08521 64 NPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP 122 (123)
T ss_pred CCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence 46799999999987 5789999986653 3577888888888854444444433
No 49
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=92.73 E-value=0.42 Score=37.12 Aligned_cols=67 Identities=9% Similarity=0.157 Sum_probs=51.4
Q ss_pred cccccceeeee-ecccceeeEEEEEecC-------cccccceeeehhhhhcccCcceeeec---------------ccce
Q psy3348 5 NQAWDQRFSID-LDKSRELEIGVYWRDW-------RSLCGVKFLRLEEFIDDIRHGMALQL---------------EPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~-LeRsRELEI~VywrD~-------RsLCav~flRLEdfLDn~~h~~~l~L---------------EPQG 61 (147)
..-|++.|.|. +..+.+|+|.||=.|- .++.|...+-++++...+...-+++| .+.|
T Consensus 51 nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~ 130 (146)
T cd04013 51 TLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESP 130 (146)
T ss_pred CCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCC
Confidence 45699999997 4457899999985542 37999999999999977665555554 4457
Q ss_pred eEEEEEEeeC
Q psy3348 62 LLFAEIKFLN 71 (147)
Q Consensus 62 ~LfaevtF~n 71 (147)
.|.+.++|.+
T Consensus 131 ~lrik~rf~~ 140 (146)
T cd04013 131 SIRIKARYQS 140 (146)
T ss_pred EEEEEEEEEE
Confidence 8889888864
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=92.62 E-value=0.25 Score=35.04 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=42.0
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE 58 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE 58 (147)
...||+.|.+.+.. .+.|.|.|+-.|. ..+.|-..+.|.++..+.....+++||
T Consensus 63 nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 63 NPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 56899999999865 5689999996553 357788888888876667777777776
No 51
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=92.53 E-value=0.37 Score=36.13 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=41.6
Q ss_pred ccccccceeeeeecc-cceeeEEEEEecCc---------ccccceeeehhhhhcccCcceeeecc
Q psy3348 4 GNQAWDQRFSIDLDK-SRELEIGVYWRDWR---------SLCGVKFLRLEEFIDDIRHGMALQLE 58 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR-sRELEI~VywrD~R---------sLCav~flRLEdfLDn~~h~~~l~LE 58 (147)
.+..|++.|.|.+.. +..|+|.||=.|.- .+=|-.-+.|.++..+..+...++|+
T Consensus 46 ~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 46 SNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 567899999999854 56899999855542 33455566788888888888888877
No 52
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=91.69 E-value=0.8 Score=33.06 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecc---------cceeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLE---------PQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LE---------PQG~LfaevtF~n 71 (147)
..-|++.|.+.... .+.|+|.||=+|. ...+|-..+.|.++.+... ..++|+ ..|.|.++|.+.|
T Consensus 47 nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 47 SPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDSQTL--RTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCCcCc--eEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 46799999997744 5679999995542 3556666667766544333 344553 4688888877654
No 53
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=90.64 E-value=0.56 Score=35.56 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred cccc-cceeeeeecccceeeEEEEEecC------cccccceeeehhhhhccc---Ccceeeecccce
Q psy3348 5 NQAW-DQRFSIDLDKSRELEIGVYWRDW------RSLCGVKFLRLEEFIDDI---RHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~W-DQ~F~I~LeRsRELEI~VywrD~------RsLCav~flRLEdfLDn~---~h~~~l~LEPQG 61 (147)
...| ++.|.+.+..+..|+|+||.+|- ..+-|-.-+-|.+++..+ .+..+.+|+.++
T Consensus 57 nP~W~nE~f~f~v~~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~ 123 (137)
T cd08691 57 NPVWHREQFVFVGLPTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT 123 (137)
T ss_pred CCceEceEEEEEcCCCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC
Confidence 5689 99999999999999999997653 246677777899998763 244566777665
No 54
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=90.63 E-value=0.41 Score=35.04 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=39.0
Q ss_pred cccccceeee-eecc----cceeeEEEEEecC---cccccceeeehhhh-hc-ccCcceeeeccc
Q psy3348 5 NQAWDQRFSI-DLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEF-ID-DIRHGMALQLEP 59 (147)
Q Consensus 5 ~q~WDQ~F~I-~LeR----sRELEI~VywrD~---RsLCav~flRLEdf-LD-n~~h~~~l~LEP 59 (147)
...||++|.+ .++. ..-|+|.|+..|. ..+.|-..+.|.++ +. .+.-.++++|-|
T Consensus 64 nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 64 NPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 4679999999 4553 2458999998763 56788888888887 32 244666666654
No 55
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=90.37 E-value=0.65 Score=34.58 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=44.1
Q ss_pred cccccceeeeeecc-----cceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecccce
Q psy3348 5 NQAWDQRFSIDLDK-----SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-----sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEPQG 61 (147)
...|+++|++++.- ...|.|.||=.|.- .+.|-..|-|.++..++...++++|++..
T Consensus 50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 50 SPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred CCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 56899999999852 34588999855532 26778888899999888888899998764
No 56
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=89.90 E-value=0.76 Score=32.93 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=41.8
Q ss_pred cccccceeeeeeccc---ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDLDKS---RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs---RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...||+.|.+.+... +.|+|.||=+|- -.++|...+.|.+++.. .+..+.+|+.+
T Consensus 62 ~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 62 NPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 568999999998754 789999996553 25788889999999854 55666666644
No 57
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=89.04 E-value=2 Score=32.03 Aligned_cols=65 Identities=20% Similarity=0.442 Sum_probs=46.0
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhccc---Cccee--eec--ccceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDI---RHGMA--LQL--EPQGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~---~h~~~--l~L--EPQG~LfaevtF 69 (147)
...||+.|.+.+.. ...|.|+||=+|. -.+-|-..+.|.+++... +..+. +++ -..|-+.++++|
T Consensus 59 nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 59 NPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 46799999998854 5679999996664 256788889999999732 23222 333 334888888876
No 58
>PLN03008 Phospholipase D delta
Probab=88.47 E-value=1.3 Score=43.98 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=53.5
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeec--------ccceeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQL--------EPQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~L--------EPQG~LfaevtF~n 71 (147)
+..|+|+|.|.+.- +.+|++.||=.|. ..+=|..++-|++++..+.-..+++| .+.|.|++++.|..
T Consensus 101 NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 101 EPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTP 178 (868)
T ss_pred CCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEE
Confidence 56899999999975 8899999984433 46778889999999888765555554 57789999999974
No 59
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=88.21 E-value=1.2 Score=31.38 Aligned_cols=44 Identities=23% Similarity=0.453 Sum_probs=36.2
Q ss_pred cccc-cceeeeeeccc----ceeeEEEEEecC---cccccceeeehhhhhcc
Q psy3348 5 NQAW-DQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEEFIDD 48 (147)
Q Consensus 5 ~q~W-DQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEdfLDn 48 (147)
...| ++.|.+++... +.|+|.||=+|. ..++|-..+-|.+++..
T Consensus 44 nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~ 95 (110)
T cd08688 44 NPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLK 95 (110)
T ss_pred CCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhccc
Confidence 5679 99999998763 689999997765 25789999999999884
No 60
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=87.86 E-value=0.9 Score=32.20 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=40.1
Q ss_pred cccccceeeee-ecc----cceeeEEEEEecC--cccccceeeehhhhhcccCcceeee
Q psy3348 5 NQAWDQRFSID-LDK----SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQ 56 (147)
Q Consensus 5 ~q~WDQ~F~I~-LeR----sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~ 56 (147)
..-||+.|.++ +.. +..|.|.||-+|. ..++|-..+.|.+++..+.+...+.
T Consensus 64 ~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 64 NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 56799999985 433 4679999996653 5789999999999998877766554
No 61
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=87.74 E-value=0.92 Score=31.80 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=35.4
Q ss_pred cccccceeeeeecc------cceeeEEEEEecC---cccccceeeehhhhhcccCcce
Q psy3348 5 NQAWDQRFSIDLDK------SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGM 53 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR------sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~ 53 (147)
...||+.|.+++.. ...|+|.||=+|. ..+=|...+.|.++.+..+|++
T Consensus 44 nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~ 101 (111)
T cd04011 44 CPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAF 101 (111)
T ss_pred CCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcc
Confidence 56799999998754 3469999995543 1345677778888888777654
No 62
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=87.72 E-value=1.5 Score=31.12 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=42.5
Q ss_pred ccccccceeeee--ecccceeeEEEEEecCc-------ccccceeeehhhhhcccCcceeeeccc
Q psy3348 4 GNQAWDQRFSID--LDKSRELEIGVYWRDWR-------SLCGVKFLRLEEFIDDIRHGMALQLEP 59 (147)
Q Consensus 4 s~q~WDQ~F~I~--LeRsRELEI~VywrD~R-------sLCav~flRLEdfLDn~~h~~~l~LEP 59 (147)
....|++.|.++ .+....|.|+||=.|.. .+-|-.-+.|.+++........++|.|
T Consensus 50 ~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 50 LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 356799999996 46778899999977641 356677788899998877777777744
No 63
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=87.38 E-value=1.4 Score=27.87 Aligned_cols=48 Identities=29% Similarity=0.494 Sum_probs=35.6
Q ss_pred cccccceeeeeecc--cceeeEEEEEecCc---ccccceeeehhhhhcccCcc
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHG 52 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~ 52 (147)
...||+.|.+.+.. .+.|.|.||-++.. .+=|...+-|.++.+...+.
T Consensus 47 ~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 47 NPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred CCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcccc
Confidence 67899999999988 89999999976642 34455556677776665543
No 64
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=86.58 E-value=1.6 Score=30.65 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=34.0
Q ss_pred ccccccceeeeee-c----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc
Q psy3348 4 GNQAWDQRFSIDL-D----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE 58 (147)
Q Consensus 4 s~q~WDQ~F~I~L-e----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE 58 (147)
....||+.|.+++ . ....|.|.||=.|. ..+.|-..+.|.+ ........+.+||
T Consensus 64 ~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~-~~~~~~~~W~~L~ 125 (125)
T cd04031 64 LNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD-ALLDDEPHWYPLQ 125 (125)
T ss_pred CCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc-ccccCCcceEECc
Confidence 3567999999985 3 35678999985553 3456666777776 2222233444443
No 65
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=86.33 E-value=1.4 Score=31.93 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=36.3
Q ss_pred cccccceeeeeecc-cceeeEEEEEecCc---ccccceeeehhhhhcc
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDWR---SLCGVKFLRLEEFIDD 48 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~R---sLCav~flRLEdfLDn 48 (147)
...|++.|.|.+.. .+.|.|+||-+|.- .+.|...+.|.++++.
T Consensus 46 ~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 46 NPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence 56799999998865 48999999966542 4788899999999987
No 66
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=86.08 E-value=1.5 Score=34.08 Aligned_cols=41 Identities=17% Similarity=0.535 Sum_probs=33.8
Q ss_pred cccccceeeeeecc--cceeeEEEEEecCcccccceeeehhhhh
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDWRSLCGVKFLRLEEFI 46 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~RsLCav~flRLEdfL 46 (147)
...||+.|.+.+.. ...|.|.||=+| ..+-|-..+.|.++.
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d-d~~IG~v~i~l~~l~ 143 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD-DDFLGCVNIPLKDLP 143 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC-CCeEEEEEEEHHHhC
Confidence 56799999999976 678999999666 667777888888887
No 67
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=85.81 E-value=1.3 Score=31.23 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=40.0
Q ss_pred cccccceeeeee---c--ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc
Q psy3348 5 NQAWDQRFSIDL---D--KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP 59 (147)
Q Consensus 5 ~q~WDQ~F~I~L---e--RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP 59 (147)
...||+.|.++. + ..+.|+|.|+=.|. ..+.|-..+.|.++-..+....+.+|.|
T Consensus 63 ~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 63 NPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred CCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 467999999863 2 23568999996553 2467888888888876777777777765
No 68
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=85.57 E-value=1.5 Score=30.93 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=34.4
Q ss_pred cccccceeeeeecc-----cceeeEEEEEecC---cccccceeeehhhhhcc
Q psy3348 5 NQAWDQRFSIDLDK-----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDD 48 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-----sRELEI~VywrD~---RsLCav~flRLEdfLDn 48 (147)
...||+.|.+.... .+.|+|.||=.|. ..+.|-..+.|.+++.+
T Consensus 49 nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 49 NPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence 56799999997653 4789999996653 36788899999999843
No 69
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=85.20 E-value=1.6 Score=31.78 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=36.2
Q ss_pred cccccceeeeeecc------cceeeEEEEEecC---cccccceeeehhhhhcccC
Q psy3348 5 NQAWDQRFSIDLDK------SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR 50 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR------sRELEI~VywrD~---RsLCav~flRLEdfLDn~~ 50 (147)
...||+.|.+++.. ...|.|.||-+|. ..++|-..+.|.++.+.+.
T Consensus 67 nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred CCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcccc
Confidence 45799999999865 4578999997764 4678888899999987544
No 70
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=85.02 E-value=2.1 Score=31.07 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=33.3
Q ss_pred cccccceeeeee-c----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceee
Q psy3348 5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMAL 55 (147)
Q Consensus 5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l 55 (147)
...||++|++++ . ..+.|+|.|+-+|. ..+=|-..+-|.++..++....+.
T Consensus 61 nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~ 119 (122)
T cd08381 61 NPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWY 119 (122)
T ss_pred CCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceE
Confidence 567999999987 2 35789999996664 223355566666666554444333
No 71
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=84.84 E-value=1.7 Score=31.63 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=34.2
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL 57 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L 57 (147)
...||++|.+++.. .+.|+|.||-.|. ..+-|-..+-|.++--++....+++|
T Consensus 65 nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 65 NPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 45799999999865 4579999996653 23445555666665444444444443
No 72
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=81.28 E-value=3.1 Score=29.80 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=32.3
Q ss_pred ccccccceeeeee---cccceeeEEEEEecC---cccccceeeehhhhhcc
Q psy3348 4 GNQAWDQRFSIDL---DKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD 48 (147)
Q Consensus 4 s~q~WDQ~F~I~L---eRsRELEI~VywrD~---RsLCav~flRLEdfLDn 48 (147)
....|++.|.+.+ +.+..|.|.||=+|. ..+=|-..+.|.+++..
T Consensus 48 ~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 48 LNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred CCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence 3567999999987 345678999985553 34456677778887764
No 73
>KOG0694|consensus
Probab=81.05 E-value=0.97 Score=43.77 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=49.2
Q ss_pred cccccceeeeeecccceeeEEEEEe-cCcccccceeeehhhhhccc-----CcceeeecccceeEEEEEEeeCC
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWR-DWRSLCGVKFLRLEEFIDDI-----RHGMALQLEPQGLLFAEIKFLNP 72 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~Vywr-D~RsLCav~flRLEdfLDn~-----~h~~~l~LEPQG~LfaevtF~nP 72 (147)
...|+.+|.+++.+.+++||.||.+ ..+ =|+.-+++.+..++. ....++.+||+|.++..+...+-
T Consensus 52 ~~~~~~~F~~~v~~~~~~~i~v~~~~~~~--~~~~~a~~~~~~e~~k~~~~~~~~w~~~~~~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 52 IPELRETFHVEVVAGGAKNIIVLLKSPDP--KALSEAQLSLQEESQKLLALEQRLWVLIEELGTLLKPAALTGT 123 (694)
T ss_pred CchhhhheeeeeecCCceEEEEEecCCcc--hhhHHHhHHHHHHHHHHHhhhhhhccccccccceeeeecccCc
Confidence 3579999999999999999999987 222 133344444444443 25577889999999999988873
No 74
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=80.20 E-value=2.9 Score=31.02 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=29.5
Q ss_pred cccccceeeeeec----ccceeeEEEEEecCc---ccccceeeehhhh
Q psy3348 5 NQAWDQRFSIDLD----KSRELEIGVYWRDWR---SLCGVKFLRLEEF 45 (147)
Q Consensus 5 ~q~WDQ~F~I~Le----RsRELEI~VywrD~R---sLCav~flRLEdf 45 (147)
+..||++|++++. ..+.|+|.|+-.|.- .+=|-.-+-|.++
T Consensus 64 nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 64 KPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 5679999999987 468999999977642 2344455566666
No 75
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=79.56 E-value=4.5 Score=31.26 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=36.5
Q ss_pred cccccceeeeee-cccceeeEEEEE-ecCc---ccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDL-DKSRELEIGVYW-RDWR---SLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~L-eRsRELEI~Vyw-rD~R---sLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|||+|++++ ...+.|+|.|+- .|.. .+=|-..+-|.++=-+.....+.+|.|.
T Consensus 79 nPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 79 DPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 457999999999 478899999973 2221 1345556677775223444566676664
No 76
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=79.53 E-value=3.6 Score=29.86 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=36.6
Q ss_pred ccccccceeeeeecc---cceeeEEEEEecC----cccccceeeehhhhhcccCcce
Q psy3348 4 GNQAWDQRFSIDLDK---SRELEIGVYWRDW----RSLCGVKFLRLEEFIDDIRHGM 53 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR---sRELEI~VywrD~----RsLCav~flRLEdfLDn~~h~~ 53 (147)
....|+|+|.+++.. .+.|.|.|+-+|. ..+-|-..+-|.+++.++.+.-
T Consensus 59 ~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~ 115 (119)
T cd08685 59 ANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISG 115 (119)
T ss_pred CCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccc
Confidence 356799999999743 2458899997764 2478888899999986554433
No 77
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=76.23 E-value=8.5 Score=29.35 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=44.1
Q ss_pred ccccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeEE
Q psy3348 4 GNQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLF 64 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~Lf 64 (147)
....|++.|++.+.. ...+.|.||=+|. -.+.|-..+.|.+++...+..- +.-.|.|...
T Consensus 44 ~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~~~-~~~~~~~~~~ 107 (145)
T cd04038 44 LNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDH-LRDTPGGTQI 107 (145)
T ss_pred CCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhhhc-cccCCCCEEE
Confidence 356899999999876 6679999996653 2567888999999998755431 4456777733
No 78
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.13 E-value=5 Score=28.99 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=29.9
Q ss_pred cccccceeeeee--cccceeeEEEEEecC---cccccceeeehhhhh
Q psy3348 5 NQAWDQRFSIDL--DKSRELEIGVYWRDW---RSLCGVKFLRLEEFI 46 (147)
Q Consensus 5 ~q~WDQ~F~I~L--eRsRELEI~VywrD~---RsLCav~flRLEdfL 46 (147)
...||+.|.+++ ...+.|.|.|+=+|. ..+.|-..+.|++.+
T Consensus 46 nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 46 NPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 467999999976 446789999996654 245566666666655
No 79
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=72.53 E-value=4.3 Score=29.39 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=19.9
Q ss_pred cccccceeeeeecccc----eeeEEEEEec
Q psy3348 5 NQAWDQRFSIDLDKSR----ELEIGVYWRD 30 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsR----ELEI~VywrD 30 (147)
...||+.|.+++.... .|.|+|+-+|
T Consensus 64 nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 64 NPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 4579999999986543 6889998555
No 80
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=72.30 E-value=8.7 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=36.0
Q ss_pred cccccceeeeeec---ccceeeEEEEEecC---cccccceeeehhhhhcccC
Q psy3348 5 NQAWDQRFSIDLD---KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR 50 (147)
Q Consensus 5 ~q~WDQ~F~I~Le---RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~ 50 (147)
+..|+|.|.+++. -...|+|.||=+|. ..+.|-..+-|.+++.+..
T Consensus 58 nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 58 NPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred CCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 5689999999863 35789999996664 3578888899999888653
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=72.04 E-value=4.7 Score=29.28 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=26.7
Q ss_pred cccccceeeeeec----ccceeeEEEEEecC---cccccceeeehhh
Q psy3348 5 NQAWDQRFSIDLD----KSRELEIGVYWRDW---RSLCGVKFLRLEE 44 (147)
Q Consensus 5 ~q~WDQ~F~I~Le----RsRELEI~VywrD~---RsLCav~flRLEd 44 (147)
...||+.|.+++. ...-|+|.||=.|. ..++|-..+-+.+
T Consensus 64 nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 64 NPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 4569999999985 34568999995553 3345555554444
No 82
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=71.93 E-value=7.9 Score=28.02 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=27.1
Q ss_pred cccccceeeeeecc----cceeeEEEEEecCc---ccccceeeehhhh
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDWR---SLCGVKFLRLEEF 45 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~R---sLCav~flRLEdf 45 (147)
...||+.|.+++.. .+.|+|.||-.|.- .+=|-..+-|.++
T Consensus 65 nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 65 NPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred CCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 45799999999964 46899999965531 1233344455554
No 83
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=66.74 E-value=8.3 Score=27.10 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=29.0
Q ss_pred ccccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhh
Q psy3348 4 GNQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEE 44 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEd 44 (147)
....||++|.+++.. ...|.|.||-+|- ..+.|-..+.|.+
T Consensus 62 ~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 62 LNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 356899999999876 4679999996653 2455555555555
No 84
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=66.63 E-value=13 Score=25.72 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=30.4
Q ss_pred ccccccceeeeeecc------cceeeEEEEEecCc---ccccceeeehhhhhcc
Q psy3348 4 GNQAWDQRFSIDLDK------SRELEIGVYWRDWR---SLCGVKFLRLEEFIDD 48 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR------sRELEI~VywrD~R---sLCav~flRLEdfLDn 48 (147)
....|+ .|.|.++. .+.|.|+||=.|.- .+-|-.-+-|.+++-+
T Consensus 49 ~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 49 LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 356799 79988643 68999999955432 3456666777777743
No 85
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=64.46 E-value=9.6 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.6
Q ss_pred cccccceeeeeecc----cceeeEEEEEec
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRD 30 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD 30 (147)
...||+.|.+++.. ..-|.|.|+-+|
T Consensus 64 ~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 64 NPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 46899999988752 346889998555
No 86
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=64.13 E-value=15 Score=39.82 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=55.0
Q ss_pred cccccceeeeeecccc--e-eeEEEEEecC--cccccceeeehhhhhcccCcceeeeccc----cee---EEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDKSR--E-LEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEP----QGL---LFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsR--E-LEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEP----QG~---LfaevtF~n 71 (147)
...|+|.|++.++..- + |.|+||-+|. ...=|-.-+.|.+++.+.+..-.++|.+ -|. |.+|+...|
T Consensus 2023 nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2023 SPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 4679999998888844 5 9999998765 2345667789999999999999999997 567 999998876
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=63.52 E-value=8.6 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.2
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW 31 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~ 31 (147)
...||+.|.+++... ..|+|.||-+|.
T Consensus 63 nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 63 NPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 457999999987542 358999996653
No 88
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=62.76 E-value=32 Score=25.03 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=39.4
Q ss_pred cccccceeeeeec-----------ccceeeEEEEEecC----cccccceeeehhhhh---cccCcceeeecc----ccee
Q psy3348 5 NQAWDQRFSIDLD-----------KSRELEIGVYWRDW----RSLCGVKFLRLEEFI---DDIRHGMALQLE----PQGL 62 (147)
Q Consensus 5 ~q~WDQ~F~I~Le-----------RsRELEI~VywrD~----RsLCav~flRLEdfL---Dn~~h~~~l~LE----PQG~ 62 (147)
...|++.|.++.- ....|.|+|+=+|. +-|+.+.+.-+..+- +...+..+.+|+ .+|-
T Consensus 45 nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Ge 124 (135)
T cd04017 45 SPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGE 124 (135)
T ss_pred CCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhh
Confidence 5679999998742 23568899985553 344455432222222 234566777777 6667
Q ss_pred EEEEEEee
Q psy3348 63 LFAEIKFL 70 (147)
Q Consensus 63 LfaevtF~ 70 (147)
|.+.+.+.
T Consensus 125 il~~~~~~ 132 (135)
T cd04017 125 LLAAFELI 132 (135)
T ss_pred eeEEeEEE
Confidence 77766654
No 89
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=61.45 E-value=11 Score=23.46 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=20.3
Q ss_pred ccccccceeeee--ecccceeeEEEEEec
Q psy3348 4 GNQAWDQRFSID--LDKSRELEIGVYWRD 30 (147)
Q Consensus 4 s~q~WDQ~F~I~--LeRsRELEI~VywrD 30 (147)
...-||+.|.+. .....+|.|+||-.+
T Consensus 45 ~~P~w~e~~~~~~~~~~~~~l~~~V~~~~ 73 (85)
T PF00168_consen 45 SNPVWNEEFEFPLDDPDLDSLSFEVWDKD 73 (85)
T ss_dssp SSEEEEEEEEEEESHGCGTEEEEEEEEET
T ss_pred ccceeeeeeeeeeecccccceEEEEEECC
Confidence 455799999999 445677999998443
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=60.32 E-value=6.9 Score=28.68 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=20.0
Q ss_pred cccccceeeeeecc--cce--eeEEEEEecC
Q psy3348 5 NQAWDQRFSIDLDK--SRE--LEIGVYWRDW 31 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRE--LEI~VywrD~ 31 (147)
...||++|.+++.. ..+ |+|.||-+|.
T Consensus 63 nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~ 93 (135)
T cd08410 63 DPFYNESFSFKVPQEELENVSLVFTVYGHNV 93 (135)
T ss_pred CCccceeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 46799999999854 233 8899995543
No 91
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=59.59 E-value=14 Score=28.39 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=29.2
Q ss_pred cccccceeeeeec-----ccceeeEEEEEecC---cccccceeeehhhhhccc
Q psy3348 5 NQAWDQRFSIDLD-----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDI 49 (147)
Q Consensus 5 ~q~WDQ~F~I~Le-----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~ 49 (147)
...||+.|.+++- ..+.|+|.||-+|. ..++|-..+-|.++..+.
T Consensus 76 nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~ 128 (162)
T cd04020 76 NPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG 128 (162)
T ss_pred CCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC
Confidence 5689999999842 23569999995543 344555556666554443
No 92
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=57.68 E-value=9.7 Score=27.24 Aligned_cols=26 Identities=35% Similarity=0.624 Sum_probs=20.7
Q ss_pred cccccceeeeeeccc----ceeeEEEEEec
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRD 30 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD 30 (147)
..-|++.|.+++... +.|.|.||-+|
T Consensus 62 nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 62 NPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 467999999998753 67999999554
No 93
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=57.62 E-value=10 Score=27.93 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=21.2
Q ss_pred cccccceeeeeecc----cceeeEEEEEec
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRD 30 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD 30 (147)
...|+++|.+++.. .+.|+|.|+-.|
T Consensus 65 nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~ 94 (128)
T cd08392 65 NPVFNETLKYVVEADLLSSRQLQVSVWHSR 94 (128)
T ss_pred CCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence 45699999999866 478999998555
No 94
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=56.11 E-value=12 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=21.3
Q ss_pred cccccceeeeee---cccceeeEEEEEecC
Q psy3348 5 NQAWDQRFSIDL---DKSRELEIGVYWRDW 31 (147)
Q Consensus 5 ~q~WDQ~F~I~L---eRsRELEI~VywrD~ 31 (147)
...|+++|.|.+ +..+.|+|.||=+|.
T Consensus 71 nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 71 NPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 567999999864 457899999995544
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=50.90 E-value=16 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=21.9
Q ss_pred ccccccceeeeeeccc----ceeeEEEEEecC
Q psy3348 4 GNQAWDQRFSIDLDKS----RELEIGVYWRDW 31 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRs----RELEI~VywrD~ 31 (147)
....||+.|.+++... ..|+|.|+-.|.
T Consensus 62 ~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 62 ASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 3567999999998643 679999996654
No 96
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=38.49 E-value=36 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=21.7
Q ss_pred ccccccceeeeeec----ccceeeEEEEEec
Q psy3348 4 GNQAWDQRFSIDLD----KSRELEIGVYWRD 30 (147)
Q Consensus 4 s~q~WDQ~F~I~Le----RsRELEI~VywrD 30 (147)
.+..||++|.+++. ..+.|+|.|+-.|
T Consensus 64 ~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~ 94 (138)
T cd08408 64 PDPEFKETFVFQVALFQLSEVTLMFSVYNKR 94 (138)
T ss_pred CCCcEeeeEEEECCHHHhCccEEEEEEEECC
Confidence 45689999999996 4568999999655
No 97
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=38.48 E-value=16 Score=32.67 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=22.0
Q ss_pred CCchhhHHHHHH--HhhCCCCCCcccccchHhhHHHHH
Q psy3348 76 RKPKLQRQRKIF--KQQGKNFPRANQMNINVATWGRLL 111 (147)
Q Consensus 76 R~pkLqRQkriF--k~kGk~f~Ra~qmninvatW~RLl 111 (147)
|.--++||+||| |. .-||||+.+|..=+
T Consensus 20 R~~E~eR~~Rifn~r~--------R~iGvD~~aL~~Qv 49 (379)
T PF05914_consen 20 RQREEERQKRIFNARN--------RTIGVDVEALDRQV 49 (379)
T ss_pred HHhHHHHHHhccChHH--------hhhCcCHHHHHHHH
Confidence 346689999999 54 58999999998643
No 98
>PLN02352 phospholipase D epsilon
Probab=37.85 E-value=95 Score=30.80 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=48.7
Q ss_pred ccccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcccC-cceeeecc-------cceeEEEEEEeeC
Q psy3348 4 GNQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIR-HGMALQLE-------PQGLLFAEIKFLN 71 (147)
Q Consensus 4 s~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn~~-h~~~l~LE-------PQG~LfaevtF~n 71 (147)
.+..|+|+|.|..--.-|-+|...-+|--+|-|..+|-.+++|..+. -.-++++. |...|++.+.|.+
T Consensus 56 ~~p~w~e~f~i~~ah~~~~~~~f~vk~~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 56 YDRVWNQTFQILCAHPLDSTITITLKTKCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRP 131 (758)
T ss_pred CCCccccceeEEeeeecCCcEEEEEecCCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEE
Confidence 35679999999998877444445557988899999999999998633 33333321 2258888888864
No 99
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=34.23 E-value=67 Score=16.35 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.1
Q ss_pred CcceeeecccceeEEEEEEeeC
Q psy3348 50 RHGMALQLEPQGLLFAEIKFLN 71 (147)
Q Consensus 50 ~h~~~l~LEPQG~LfaevtF~n 71 (147)
.||.+..--|.|.|..+..|.|
T Consensus 1 ~~G~~~~yy~nG~l~~~~~y~n 22 (22)
T PF07661_consen 1 LDGEWKFYYENGKLKSEGHYKN 22 (22)
T ss_pred CcceEEEEeCCCCEEEEEEEEC
Confidence 3677777889999999999876
No 100
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=33.53 E-value=34 Score=25.69 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=20.4
Q ss_pred cccccceeeeeecc----cceeeEEEEEec
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRD 30 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD 30 (147)
+..|++.|.+++.. ..-|+|.||-.|
T Consensus 64 nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 64 NPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 56799999999864 455999999665
No 101
>PLN02270 phospholipase D alpha
Probab=32.37 E-value=1.4e+02 Score=29.99 Aligned_cols=72 Identities=14% Similarity=0.308 Sum_probs=53.2
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeec--------ccceeEEEEEEeeCCc
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQL--------EPQGLLFAEIKFLNPM 73 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~L--------EPQG~LfaevtF~nPv 73 (147)
+..|+|+|.|..-- +-++++.|-=.|. -+|-|..+|-.|++|..+.-.-++++ .|.-.|++.+.|.+
T Consensus 72 ~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~-- 149 (808)
T PLN02270 72 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE-- 149 (808)
T ss_pred CCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE--
Confidence 56899999999866 6677777743232 67889999999999987665555544 45558999999987
Q ss_pred cCCCc
Q psy3348 74 ISRKP 78 (147)
Q Consensus 74 ieR~p 78 (147)
+++.|
T Consensus 150 ~~~~~ 154 (808)
T PLN02270 150 VTKDR 154 (808)
T ss_pred cccCc
Confidence 44444
No 102
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=30.25 E-value=56 Score=25.29 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=16.9
Q ss_pred cccccceeeeeecc---cceeeEEEE
Q psy3348 5 NQAWDQRFSIDLDK---SRELEIGVY 27 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR---sRELEI~Vy 27 (147)
+..|++.|++++.- ...|.|+||
T Consensus 64 ~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 64 QVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CceecceEEEeCCchhheeEEEEEEE
Confidence 34699999998743 456777777
No 103
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=29.19 E-value=56 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=21.1
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW 31 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~ 31 (147)
...|++.|++++.. ..-|+|.|+-.|.
T Consensus 66 nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~ 96 (138)
T cd08407 66 NPVWNEMIMFELPSELLAASSVELEVLNQDS 96 (138)
T ss_pred CCccccEEEEECCHHHhCccEEEEEEEeCCC
Confidence 46799999999865 3559999996654
No 104
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=28.46 E-value=54 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=19.7
Q ss_pred ccCcceeeec--ccceeEEEEEEeeCCc
Q psy3348 48 DIRHGMALQL--EPQGLLFAEIKFLNPM 73 (147)
Q Consensus 48 n~~h~~~l~L--EPQG~LfaevtF~nPv 73 (147)
+++..+.+++ +|.|.+|++|+|.|--
T Consensus 64 g~~Y~i~~n~~~~P~~s~~~ki~F~dr~ 91 (135)
T TIGR03711 64 GQTYKLSLNADASPEGSVYLKITFFDRQ 91 (135)
T ss_pred CCEEEEEEeeeeCCCceEEEEEEEeccC
Confidence 3555555555 9999999999999853
No 105
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=28.37 E-value=60 Score=25.20 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=22.8
Q ss_pred hhhhcccCcceeeec--ccceeEEEEEEeeCCc
Q psy3348 43 EEFIDDIRHGMALQL--EPQGLLFAEIKFLNPM 73 (147)
Q Consensus 43 EdfLDn~~h~~~l~L--EPQG~LfaevtF~nPv 73 (147)
--+.-+++..+.+++ .|.+.+|++|+|.|--
T Consensus 48 PlLk~G~~Y~l~~~~~~~P~~svylki~F~dr~ 80 (128)
T PF15432_consen 48 PLLKRGHTYQLKFNIDVVPENSVYLKIIFFDRQ 80 (128)
T ss_pred CEecCCCEEEEEEEEEEccCCeEEEEEEEEccC
Confidence 334445666666555 8999999999999854
No 106
>KOG3916|consensus
Probab=26.39 E-value=14 Score=33.70 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=29.7
Q ss_pred EEEEEEeeCCc------c-CCCchhhHHH---HHH--H-hhCCCCCCcccccchHh
Q psy3348 63 LFAEIKFLNPM------I-SRKPKLQRQR---KIF--K-QQGKNFPRANQMNINVA 105 (147)
Q Consensus 63 LfaevtF~nPv------i-eR~pkLqRQk---riF--k-~kGk~f~Ra~qmninva 105 (147)
+=+-|-|.|-. + .-.|-||||+ +|| - .-++-|.||.=||+.+-
T Consensus 153 vAIIIPfR~Re~HL~~~l~~LhP~LqrQrL~y~iyVieQ~g~~~FNRakL~NVGf~ 208 (372)
T KOG3916|consen 153 VAIIIPFRNREEHLRYLLHHLHPFLQRQRLDYRIYVIEQAGNKPFNRAKLLNVGFL 208 (372)
T ss_pred eEEEeecccHHHHHHHHHHHhhHHHHhhhhceeEEEEEecCCCcccHHHhhhhHHH
Confidence 44556666653 1 1458899999 777 2 33599999999998653
No 107
>PF02001 DUF134: Protein of unknown function DUF134; InterPro: IPR002852 The bacterial and archaeal proteins in this family have no known function.
Probab=24.28 E-value=38 Score=25.63 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=16.6
Q ss_pred CcccccchHhhHHHHHhhh
Q psy3348 96 RANQMNINVATWGRLLKRS 114 (147)
Q Consensus 96 Ra~qmninvatW~RLl~~~ 114 (147)
=|.+|||+-.|..|++.++
T Consensus 63 aA~~MgVSR~T~~ril~~A 81 (106)
T PF02001_consen 63 AAERMGVSRPTFQRILESA 81 (106)
T ss_pred HHHHcCCcHHHHHHHHHHH
Confidence 3679999999999999875
No 108
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=24.13 E-value=54 Score=22.45 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=23.3
Q ss_pred eeEEEEEEeeCCccCC--CchhhHHHHHHHhhCCCCC
Q psy3348 61 GLLFAEIKFLNPMISR--KPKLQRQRKIFKQQGKNFP 95 (147)
Q Consensus 61 G~LfaevtF~nPvieR--~pkLqRQkriFk~kGk~f~ 95 (147)
+.+++||+..+=.... ..||+.+|+.++++|..|.
T Consensus 48 ~~~~ieVK~~~~l~~~~~~~k~~~~~~y~~~~g~~f~ 84 (88)
T PF08722_consen 48 KPVAIEVKPSSELEKPRTKEKLEIEREYWEEQGIPFR 84 (88)
T ss_dssp SEEEEEE--GGGGGSHHHHHHHHHHHHHHHHCT--EE
T ss_pred eEEEEEEccHHHhcChhHHHHHHHHHHHHHHcCCeEE
Confidence 7889999998765552 2788888877788887763
No 109
>KOG0696|consensus
Probab=24.11 E-value=74 Score=30.81 Aligned_cols=44 Identities=32% Similarity=0.668 Sum_probs=31.3
Q ss_pred cccccceeeeee---cccceeeEEEEEecCc-----ccccceeeehhhhhcccC
Q psy3348 5 NQAWDQRFSIDL---DKSRELEIGVYWRDWR-----SLCGVKFLRLEEFIDDIR 50 (147)
Q Consensus 5 ~q~WDQ~F~I~L---eRsRELEI~VywrD~R-----sLCav~flRLEdfLDn~~ 50 (147)
+..|+++|+++| |+-|-|-|+|. ||- ..-|.-..-+++++.+..
T Consensus 229 NP~wNEtftf~Lkp~DkdrRlsiEvW--DWDrTsRNDFMGslSFgisEl~K~p~ 280 (683)
T KOG0696|consen 229 NPVWNETFTFKLKPSDKDRRLSIEVW--DWDRTSRNDFMGSLSFGISELQKAPV 280 (683)
T ss_pred CccccceeEEecccccccceeEEEEe--cccccccccccceecccHHHHhhcch
Confidence 457999999998 67899999998 772 233444455677766543
No 110
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.81 E-value=81 Score=23.08 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=30.0
Q ss_pred eeeeeecccceeeEEEEEecCcccccceeeehhhhhcccCcceeeecccceeEEEEEEeeCC
Q psy3348 11 RFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNP 72 (147)
Q Consensus 11 ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF~nP 72 (147)
-+.+|+-.+++-++ |-++| ...|+|+|+.-.-++ .+++|++..+.
T Consensus 29 ~iE~Dv~~tkDg~~-vv~Hd--------i~tL~e~l~~~~~~~--------~i~leiK~~~~ 73 (189)
T cd08556 29 GVELDVQLTKDGVL-VVIHD--------IPTLEEVLELVKGGV--------GLNIELKEPTR 73 (189)
T ss_pred EEEEEeeEcCCCCE-EEEcC--------CCCHHHHHHhcccCc--------EEEEEECCCCC
Confidence 35677777888887 44567 889999998643332 26666776543
No 111
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=21.61 E-value=1.5e+02 Score=20.65 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=25.0
Q ss_pred ceeEEEEEEeeCCccCCCchhhHHHHHHHh
Q psy3348 60 QGLLFAEIKFLNPMISRKPKLQRQRKIFKQ 89 (147)
Q Consensus 60 QG~LfaevtF~nPvieR~pkLqRQkriFk~ 89 (147)
.|--++.|.=..|..+=.++++|||.|++-
T Consensus 25 ~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~ 54 (76)
T PF01722_consen 25 GGGSHFKIIIVSDEFEGKSRIKRHRLVYKA 54 (76)
T ss_dssp CSSSEEEEEEECGGGTTS-HHHHHHHHHHH
T ss_pred CCCceEEEEEEcHHhCCCCHHHHHHHHHHH
Confidence 566788888999999999999999999853
No 112
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=20.85 E-value=3.3e+02 Score=19.54 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=43.5
Q ss_pred cccceeeeee----------cccceeeEEEEEec--Cc-ccccceeeehhhhhcc--cCcceeeecccc----eeEEEEE
Q psy3348 7 AWDQRFSIDL----------DKSRELEIGVYWRD--WR-SLCGVKFLRLEEFIDD--IRHGMALQLEPQ----GLLFAEI 67 (147)
Q Consensus 7 ~WDQ~F~I~L----------eRsRELEI~VywrD--~R-sLCav~flRLEdfLDn--~~h~~~l~LEPQ----G~Lfaev 67 (147)
.|++.|.+.. -..++++|.|+..+ -+ ..=|...|-|.+|++. ......+.|.+- .+|.+.+
T Consensus 53 ~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi 132 (143)
T PF10358_consen 53 QWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISI 132 (143)
T ss_pred EEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEE
Confidence 5888887653 24578999999883 23 4778889999999996 445556665554 3466665
Q ss_pred Ee
Q psy3348 68 KF 69 (147)
Q Consensus 68 tF 69 (147)
.+
T Consensus 133 ~~ 134 (143)
T PF10358_consen 133 SL 134 (143)
T ss_pred EE
Confidence 54
Done!