Query psy3348
Match_columns 147
No_of_seqs 71 out of 73
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:42:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fk9_A Protein kinase C, ETA t 98.8 1.2E-08 4E-13 77.3 6.0 66 5-70 84-156 (157)
2 1yrk_A NPKC-delta, protein kin 98.7 3.5E-08 1.2E-12 75.2 6.7 65 5-70 55-124 (126)
3 2enj_A NPKC-theta, protein kin 98.7 3.9E-08 1.3E-12 76.0 6.3 65 5-70 60-129 (138)
4 1gmi_A Protein kinase C, epsil 98.6 8.8E-08 3E-12 67.7 6.9 67 5-71 62-133 (136)
5 1rlw_A Phospholipase A2, CALB 97.9 4.3E-05 1.5E-09 52.4 7.0 66 5-70 53-122 (126)
6 2dmh_A Myoferlin; beta-sandwic 97.7 0.00012 4E-09 51.2 6.7 69 5-73 50-135 (140)
7 2ep6_A MCTP2 protein; beta san 97.2 0.0014 4.6E-08 45.6 7.0 64 5-70 57-131 (133)
8 3kwu_A MUNC13-1; calcium bindi 97.0 0.0019 6.5E-08 45.5 6.8 64 5-70 61-146 (148)
9 3b7y_A E3 ubiquitin-protein li 97.0 0.0021 7.2E-08 45.5 7.0 66 5-70 70-152 (153)
10 1wfj_A Putative elicitor-respo 97.0 0.0011 3.8E-08 45.9 5.0 66 5-70 55-129 (136)
11 2nq3_A Itchy homolog E3 ubiqui 96.9 0.0018 6.2E-08 48.5 5.9 66 5-70 80-160 (173)
12 3m7f_B E3 ubiquitin-protein li 96.5 0.0057 1.9E-07 44.7 6.2 67 5-71 58-141 (176)
13 2b3r_A Phosphatidylinositol-4- 96.2 0.0072 2.5E-07 42.6 4.8 58 5-62 68-133 (134)
14 2enp_A B/K protein; C2 type 1, 96.1 0.0057 2E-07 43.1 4.3 57 5-61 80-143 (147)
15 3pyc_A E3 ubiquitin-protein li 96.1 0.016 5.3E-07 40.1 6.4 65 5-69 51-131 (132)
16 2chd_A Rabphilin-3A, exophilin 96.1 0.007 2.4E-07 42.3 4.4 56 5-60 78-141 (142)
17 3f04_A Synaptotagmin-1; C2A, c 96.1 0.0065 2.2E-07 42.4 4.3 56 5-60 81-143 (143)
18 2d8k_A Synaptotagmin VII; exoc 96.0 0.0076 2.6E-07 42.1 4.4 58 5-62 73-138 (141)
19 1rh8_A Piccolo protein; beta-s 95.9 0.014 4.7E-07 40.6 5.1 57 5-61 76-140 (142)
20 3fdw_A Synaptotagmin-like prot 95.7 0.014 4.7E-07 41.2 4.7 59 5-63 73-138 (148)
21 2r83_A Synaptotagmin-1; C2A-C2 95.5 0.036 1.2E-06 42.6 6.8 67 5-71 66-147 (284)
22 1v27_A Regulating synaptic mem 95.2 0.03 1E-06 38.5 5.0 55 5-60 70-134 (141)
23 2dmg_A KIAA1228 protein; beta- 95.1 0.019 6.6E-07 40.0 3.8 57 5-61 72-137 (142)
24 1a25_A CALB, protein kinase C 95.0 0.018 6.2E-07 40.7 3.5 55 5-60 80-140 (149)
25 3rdl_A Protein kinase C alpha 95.0 0.027 9.2E-07 38.6 4.2 56 4-60 64-125 (137)
26 1wfm_A Synaptotagmin XIII; C2 95.0 0.039 1.3E-06 38.8 5.0 57 5-61 71-134 (138)
27 2cjs_A UNC-13 homolog A, MUNC1 94.6 0.12 4.2E-06 38.6 7.2 70 5-74 54-144 (167)
28 3fbk_A RGS3, RGP3, regulator o 94.4 0.058 2E-06 38.4 4.8 56 5-60 75-138 (153)
29 1rsy_A Synaptotagmin I; calciu 94.4 0.046 1.6E-06 38.8 4.2 56 5-60 89-151 (152)
30 2q3x_A Regulating synaptic mem 94.1 0.052 1.8E-06 39.7 4.1 58 5-62 80-142 (171)
31 2cjt_A UNC-13 homolog A, MUNC1 94.0 0.14 4.7E-06 36.4 6.0 45 5-49 45-92 (131)
32 2bwq_A Regulating synaptic mem 93.6 0.09 3.1E-06 35.7 4.3 52 5-57 67-128 (129)
33 1ugk_A Synaptotagmin IV, KIAA1 93.4 0.16 5.4E-06 35.2 5.4 56 5-60 70-134 (138)
34 2z0u_A WW domain-containing pr 93.2 0.088 3E-06 38.5 4.0 55 5-59 93-155 (155)
35 1cjy_A CPLA2, protein (cytosol 91.9 0.22 7.4E-06 46.3 5.8 83 5-87 68-157 (749)
36 3jzy_A Intersectin 2; C2 domai 89.1 0.72 2.4E-05 38.3 6.0 65 5-69 431-506 (510)
37 3n5a_A Synaptotagmin-7; calciu 88.9 0.57 2E-05 31.8 4.4 40 5-44 65-111 (138)
38 1djx_A PLC-D1, phosphoinositid 88.7 0.8 2.7E-05 41.1 6.4 64 5-71 549-624 (624)
39 3bxj_A RAS GTPase-activating p 86.5 0.22 7.5E-06 42.8 1.4 70 4-73 53-159 (483)
40 1tjx_A Similar to synaptotagmi 85.8 1.1 3.8E-05 31.7 4.5 40 4-43 73-119 (159)
41 1w15_A Synaptotagmin IV; metal 85.6 1 3.5E-05 31.5 4.3 40 5-44 79-125 (153)
42 1dqv_A Synaptotagmin III; beta 85.2 2.8 9.4E-05 32.8 7.0 66 5-70 67-148 (296)
43 2cm5_A Rabphilin-3A; protein t 84.3 0.42 1.4E-05 34.2 1.8 41 5-45 86-133 (166)
44 3nsj_A Perforin-1; pore formin 72.4 6.1 0.00021 35.1 5.8 66 5-75 437-509 (540)
45 3ohm_B 1-phosphatidylinositol- 65.3 8.7 0.0003 36.5 5.5 67 5-75 772-849 (885)
46 2r83_A Synaptotagmin-1; C2A-C2 56.1 9.5 0.00032 29.0 3.4 39 5-43 199-244 (284)
47 3l9b_A Otoferlin; C2-domain, b 43.0 52 0.0018 25.0 5.7 68 5-72 61-141 (144)
48 3qr0_A Phospholipase C-beta (P 42.3 38 0.0013 31.8 5.7 66 5-74 698-774 (816)
49 2zkm_X 1-phosphatidylinositol- 40.8 60 0.0021 30.1 6.7 66 5-71 726-799 (799)
50 3lcn_C MRNA transport factor G 35.5 10 0.00036 22.4 0.5 14 77-90 12-26 (29)
51 3pfq_A PKC-B, PKC-beta, protei 35.0 36 0.0012 29.9 4.1 45 5-49 221-271 (674)
52 1dqv_A Synaptotagmin III; beta 29.8 18 0.0006 28.1 1.1 27 5-31 201-231 (296)
No 1
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=98.75 E-value=1.2e-08 Score=77.29 Aligned_cols=66 Identities=18% Similarity=0.356 Sum_probs=59.5
Q ss_pred cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhcc----cCcceeeecccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD----IRHGMALQLEPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn----~~h~~~l~LEPQG~LfaevtF~ 70 (147)
+..|++.|.+++..+++|+|.||.+|. ..++|-..+.|++++.+ ..+..+++|+|+|.|+++++|.
T Consensus 84 nP~WNE~F~f~v~~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~~G~i~l~l~~~ 156 (157)
T 2fk9_A 84 KPTYNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPEGKVFVVITLT 156 (157)
T ss_dssp SCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBSSCEEEEEEEEC
T ss_pred CCccCcEEEEEcCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCCCcEEEEEEEEE
Confidence 578999999999999999999998875 35889999999999976 6789999999999999999984
No 2
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.68 E-value=3.5e-08 Score=75.19 Aligned_cols=65 Identities=12% Similarity=0.261 Sum_probs=57.7
Q ss_pred cccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcc-----cCcceeeecccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDD-----IRHGMALQLEPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn-----~~h~~~l~LEPQG~LfaevtF~ 70 (147)
...|++.|.-.+..+|.|||.|+...- .+-|-.-+.|||++++ ....++|+|||+|.|+++++|+
T Consensus 55 ~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~-~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 55 YPEWKSTFDAHIYEGRVIQIVLMRAAE-EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQYF 124 (126)
T ss_dssp CCCTTCEEEEECCTTCEEEEEEEEETT-EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSCEEEEEEEEE
T ss_pred CcCccceEEeeeeCCEEEEEEEEcCCC-CeeeEEEEEHHHHHhhhccCCCceEEEEecccCcEEEEEEEEe
Confidence 358999999999999999999996544 7888888999999954 5679999999999999999986
No 3
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.65 E-value=3.9e-08 Score=76.05 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=57.6
Q ss_pred cccccceeeeeecccceeeEEEEEecCcccccceeeehhhhhcc-----cCcceeeecccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDD-----IRHGMALQLEPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~RsLCav~flRLEdfLDn-----~~h~~~l~LEPQG~LfaevtF~ 70 (147)
...|++.|.-.+..+|.|||.|+.. --.+-|-.-+.|||++++ ....++|+|||+|.|+++++|+
T Consensus 60 ~P~Wne~Fd~~V~~Gr~l~i~Vfh~-a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~Gkl~v~i~~~ 129 (138)
T 2enj_A 60 YPPWDSTFDAHINKGRVMQIIVKGK-NVDLISETTVELYSLAERCRKNNGKTEIWLELKPQGRMLMNARYF 129 (138)
T ss_dssp CCCSSSEEEECCCSSCEEEEEEECS-SCSCCEEEEEESHHHHHHHHHTTTCEEEEEECBSSCEEEEEEEEC
T ss_pred CccccceEeeeEECCeEEEEEEEcC-CCCeeeEEEEEHHHHHhhhccCCCceEEEEecccCcEEEEEEEEE
Confidence 3579999999999999999999954 448888888999999954 5679999999999999999995
No 4
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=98.62 E-value=8.8e-08 Score=67.72 Aligned_cols=67 Identities=21% Similarity=0.430 Sum_probs=59.0
Q ss_pred cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhccc--CcceeeecccceeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDI--RHGMALQLEPQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn~--~h~~~l~LEPQG~LfaevtF~n 71 (147)
...|++.|.+++...++|+|.||-+|. ..+.|-..+.|++++.+. ....+++|+|+|.|+++++|..
T Consensus 62 nP~WnE~f~f~v~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 62 SPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKVYVIIDLSG 133 (136)
T ss_dssp SCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSCEEEEEEEEEE
T ss_pred CCccCCEEEEEecCCCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCCeEEEEEEEEEe
Confidence 568999999999999999999998874 358888999999999864 3478999999999999999975
No 5
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=97.88 E-value=4.3e-05 Score=52.36 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=57.3
Q ss_pred cccccceeeeee--cccceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDL--DKSRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~L--eRsRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF~ 70 (147)
...|++.|.+++ .....|.|.||-+|. ..+.|-..+.|.++..+..+..+++|+|+|.+.++++..
T Consensus 53 nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le 122 (126)
T 1rlw_A 53 NPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122 (126)
T ss_dssp SCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEE
T ss_pred CCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEE
Confidence 568999999999 357899999997774 457788899999999999999999999999999998864
No 6
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=0.00012 Score=51.17 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=55.8
Q ss_pred cccccceeeeeec-----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeee---c------ccceeEEEEE
Q psy3348 5 NQAWDQRFSIDLD-----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQ---L------EPQGLLFAEI 67 (147)
Q Consensus 5 ~q~WDQ~F~I~Le-----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~---L------EPQG~Lfaev 67 (147)
...|++.|.+++. ....|.|.||-+|. ..+.|...+.|.++.+...+..+++ | .++|.|++++
T Consensus 50 nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~ 129 (140)
T 2dmh_A 50 NPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVI 129 (140)
T ss_dssp SCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEE
Confidence 5689999999985 57999999997764 3478888999999998877666665 4 3459999999
Q ss_pred EeeCCc
Q psy3348 68 KFLNPM 73 (147)
Q Consensus 68 tF~nPv 73 (147)
+|..+-
T Consensus 130 ~~~p~~ 135 (140)
T 2dmh_A 130 GYDPPS 135 (140)
T ss_dssp EECCCB
T ss_pred EEECCC
Confidence 998654
No 7
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=97.17 E-value=0.0014 Score=45.59 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=50.7
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc-------cceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE-------PQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE-------PQG~LfaevtF~ 70 (147)
...|++.|.+++.. ...|.|.||-+|. ..+.|...+.|+++.+... .+++|+ ++|.|+++++|.
T Consensus 57 nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 57 NPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp SCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSCC--EECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCCc--eEEEeecCCCCCccceEEEEEEEEE
Confidence 56899999999975 5679999998775 3567888899999977654 455554 779999999985
No 8
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=97.03 E-value=0.0019 Score=45.47 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=50.8
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--------------cccccceeeehhhhhcccCcceeeecc-------ccee
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--------------RSLCGVKFLRLEEFIDDIRHGMALQLE-------PQGL 62 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--------------RsLCav~flRLEdfLDn~~h~~~l~LE-------PQG~ 62 (147)
...|++.|.+++.. ..+|.|.||-.|. -.+.|-..+-|.++ ......+++|+ ++|.
T Consensus 61 nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~ 138 (148)
T 3kwu_A 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGA 138 (148)
T ss_dssp SCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCE
T ss_pred CCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceE
Confidence 56899999999943 5789999998874 45778888899998 33455677887 5699
Q ss_pred EEEEEEee
Q psy3348 63 LFAEIKFL 70 (147)
Q Consensus 63 LfaevtF~ 70 (147)
|+++++|.
T Consensus 139 i~l~l~~e 146 (148)
T 3kwu_A 139 IRLHISVE 146 (148)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999984
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=97.03 E-value=0.0021 Score=45.46 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=52.5
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcccCc------ceeeeccc-------ceeEEEEE
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRH------GMALQLEP-------QGLLFAEI 67 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h------~~~l~LEP-------QG~Lfaev 67 (147)
...|++.|.+++.. ...|.|.||-+|. ..+.|...+.|+++.....+ ..+++|+| .|.|.+++
T Consensus 70 nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l 149 (153)
T 3b7y_A 70 NPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKM 149 (153)
T ss_dssp SCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEE
T ss_pred CCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEE
Confidence 56899999999965 4589999997765 34678888999999887643 46778866 49999999
Q ss_pred Eee
Q psy3348 68 KFL 70 (147)
Q Consensus 68 tF~ 70 (147)
+|.
T Consensus 150 ~~~ 152 (153)
T 3b7y_A 150 TYL 152 (153)
T ss_dssp EEC
T ss_pred EEe
Confidence 985
No 10
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=96.96 E-value=0.0011 Score=45.90 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=52.7
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC---cccccceeeehhhhhcc-cCcceeeec----ccceeEEEEEEee
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW---RSLCGVKFLRLEEFIDD-IRHGMALQL----EPQGLLFAEIKFL 70 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~---RsLCav~flRLEdfLDn-~~h~~~l~L----EPQG~LfaevtF~ 70 (147)
...|++.|.+++.. ...|.|.||-+|. ..+.|...+-|++++.. +.+..+++| .+.|.|.++++|.
T Consensus 55 nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~ 129 (136)
T 1wfj_A 55 TPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFK 129 (136)
T ss_dssp SCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEE
Confidence 56899999999987 7899999997764 35778888999999764 345556666 4679999999996
No 11
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=96.88 E-value=0.0018 Score=48.52 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=53.5
Q ss_pred cccccceeeeeecccceeeEEEEEecC---cccccceeeehhhhhcccCc-----ceeeeccc-------ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRH-----GMALQLEP-------QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h-----~~~l~LEP-------QG~LfaevtF 69 (147)
...|++.|.++++....|+|.||=.|. ..+.|...+.|.+++..... .++++|++ +|.|.+.+.|
T Consensus 80 nP~Wne~f~f~v~~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~ 159 (173)
T 2nq3_A 80 SPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 159 (173)
T ss_dssp SCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred CCeECCEEEEEeCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEee
Confidence 467999999999999999999996653 34778889999999875332 45777765 6999999998
Q ss_pred e
Q psy3348 70 L 70 (147)
Q Consensus 70 ~ 70 (147)
.
T Consensus 160 l 160 (173)
T 2nq3_A 160 L 160 (173)
T ss_dssp E
T ss_pred e
Confidence 8
No 12
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=96.52 E-value=0.0057 Score=44.69 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=51.0
Q ss_pred cccccceeeeeeccc-ceeeEEEEEecC---cccccceeeehhhhhcccCc--c----eeeeccc-------ceeEEEEE
Q psy3348 5 NQAWDQRFSIDLDKS-RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRH--G----MALQLEP-------QGLLFAEI 67 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs-RELEI~VywrD~---RsLCav~flRLEdfLDn~~h--~----~~l~LEP-------QG~Lfaev 67 (147)
...|++.|.+++... ..|.|.||-.|. ..+.|-..+.|.++.....+ . .++.|+| .|.|.+.+
T Consensus 58 nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l 137 (176)
T 3m7f_B 58 NPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKM 137 (176)
T ss_dssp SCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEE
T ss_pred CCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEE
Confidence 467999999999754 589999996653 35678888999999887554 1 5778875 79999999
Q ss_pred EeeC
Q psy3348 68 KFLN 71 (147)
Q Consensus 68 tF~n 71 (147)
+|.-
T Consensus 138 ~~~p 141 (176)
T 3m7f_B 138 TYLP 141 (176)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9973
No 13
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=96.16 E-value=0.0072 Score=42.56 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=45.4
Q ss_pred cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccccee
Q psy3348 5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGL 62 (147)
Q Consensus 5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~ 62 (147)
...|+++|.++ +. ..+.|+|.||-.|. ..+.|-..+.|.++........+.+|+|.|.
T Consensus 68 nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 68 NPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp SCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred CCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence 46799999998 65 45799999997764 3467788889999988888888999998874
No 14
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.14 E-value=0.0057 Score=43.07 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=46.4
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG 61 (147)
...|++.|.+++.. .+.|+|.||-.|. ..+.|-..+-|.++........+..|+|.|
T Consensus 80 nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 143 (147)
T 2enp_A 80 KPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG 143 (147)
T ss_dssp SCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred CCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence 46899999999874 5799999996664 346778888999997777778899999876
No 15
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=96.14 E-value=0.016 Score=40.09 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=47.2
Q ss_pred cccccceeeeeecccceeeEEEEEecCc------ccccceeeehhhhhcc-cCcceeeecc---------cceeEEEEEE
Q psy3348 5 NQAWDQRFSIDLDKSRELEIGVYWRDWR------SLCGVKFLRLEEFIDD-IRHGMALQLE---------PQGLLFAEIK 68 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRsRELEI~VywrD~R------sLCav~flRLEdfLDn-~~h~~~l~LE---------PQG~Lfaevt 68 (147)
...|++.|.+.+.....|+|.||-+|.- .+.|-..+.|+++.+. ......++|. .+|.|.+++.
T Consensus 51 nP~wne~f~f~v~~~~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 51 DPKWNQHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp SCEEEEEEEEEEETTCCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred CCCccCEEEEEeCCCCEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 4679999999999988999999977652 5777778888887543 2222334443 3688999886
Q ss_pred e
Q psy3348 69 F 69 (147)
Q Consensus 69 F 69 (147)
+
T Consensus 131 ~ 131 (132)
T 3pyc_A 131 T 131 (132)
T ss_dssp E
T ss_pred c
Confidence 4
No 16
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=96.09 E-value=0.007 Score=42.25 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=46.2
Q ss_pred cccccceeeee-ecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSID-LDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~-LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|++.|.++ +.. ...|.|.||-+|. ..+-|-..+.|.++..++.+...+.|++|
T Consensus 78 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p 141 (142)
T 2chd_A 78 NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141 (142)
T ss_dssp SCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred CCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence 46799999998 543 3789999998774 24667788899999999999999999975
No 17
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=96.07 E-value=0.0065 Score=42.44 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|++.|.+++... +.|+|.||-+|. ..+.|-..+.|.++-....+..+++|+|.
T Consensus 81 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 143 (143)
T 3f04_A 81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143 (143)
T ss_dssp SCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBCC
T ss_pred CCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcCC
Confidence 467999999988644 799999997765 35678888899999888888899999984
No 18
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0076 Score=42.13 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=47.4
Q ss_pred cccccceeeeee-c----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccccee
Q psy3348 5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGL 62 (147)
Q Consensus 5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~ 62 (147)
...|++.|.+++ . ....|.|.||-+|. ..+.|-..+.|+++.....+..+++|+|.|.
T Consensus 73 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 73 NPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP 138 (141)
T ss_dssp SCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred CCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence 568999999985 2 35889999997764 3467778889999998888999999999873
No 19
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=95.86 E-value=0.014 Score=40.60 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=46.2
Q ss_pred cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348 5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG 61 (147)
...|++.|.++ +. ..+.|.|.||-+|. ..+.|-..+.|.++........+.+|+|++
T Consensus 76 nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 76 NPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp SCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred CCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 45799999986 54 46799999998775 346788888999998877888999999875
No 20
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=95.72 E-value=0.014 Score=41.25 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=46.8
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccceeE
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~L 63 (147)
...|++.|.+++.. .+.|+|.||-.|. ..+.|-..+-|.++.....+..+++|+|.|.-
T Consensus 73 nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 73 NPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp SCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred CCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence 46799999998865 5579999997664 35788889999999888888999999998753
No 21
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=95.53 E-value=0.036 Score=42.59 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=53.7
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeeccc--------ceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEP--------QGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEP--------QG~LfaevtF 69 (147)
...|++.|.+++.. .+.|+|.||-.|. ..+.|-..+.|.++........+++|+| .|.|.+.+.|
T Consensus 66 nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~ 145 (284)
T 2r83_A 66 NPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY 145 (284)
T ss_dssp SCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEE
T ss_pred CCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEe
Confidence 56799999999864 4799999997774 4577888889999887777777788865 4889988888
Q ss_pred eC
Q psy3348 70 LN 71 (147)
Q Consensus 70 ~n 71 (147)
..
T Consensus 146 ~p 147 (284)
T 2r83_A 146 VP 147 (284)
T ss_dssp ET
T ss_pred cC
Confidence 63
No 22
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=95.24 E-value=0.03 Score=38.52 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=42.7
Q ss_pred cccccceeeeee-c----ccceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|++.|.+++ . ....|+|.||-.|. ..+.|-..+.|++++.+. ...+++|+|+
T Consensus 70 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp SCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred CCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 468999999994 3 34899999997765 346788889999987654 6778888775
No 23
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.15 E-value=0.019 Score=39.97 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=45.1
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC----c-ccccceeeehhhhhcccCcceeeecccce
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW----R-SLCGVKFLRLEEFIDDIRHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~----R-sLCav~flRLEdfLDn~~h~~~l~LEPQG 61 (147)
...|++.|.+++.. .+.|+|.||-+|. . .+.|-..+.|.++........+.+|.|.|
T Consensus 72 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 72 NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137 (142)
T ss_dssp SCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred CCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence 56899999999854 4699999998874 1 37788888898887766777788888765
No 24
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=95.03 E-value=0.018 Score=40.65 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=42.8
Q ss_pred cccccceeeeeecc---cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDLDK---SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR---sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|++.|.+++.. .+.|.|.||-+|. ..+.|-..+.|.++.... ...+++|+|.
T Consensus 80 nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 140 (149)
T 1a25_A 80 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 140 (149)
T ss_dssp SCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence 56799999999865 4789999997765 346788888999988763 5567777765
No 25
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=95.01 E-value=0.027 Score=38.62 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=43.9
Q ss_pred ccccccceeeeeecc---cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 4 GNQAWDQRFSIDLDK---SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR---sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
....|++.|.+++.. .+.|.|.||-+|. ..+.|-..+-|.++.... ...+.+|+|+
T Consensus 64 ~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 64 LNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp SSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 356799999999854 4679999997764 347788899999998876 6677787765
No 26
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=94.98 E-value=0.039 Score=38.81 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=44.7
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccce
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQG 61 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG 61 (147)
...|++.|.+++.. .+.|+|.||-.|. ..+.|-..+-|.++-.......+.+|+|.+
T Consensus 71 nP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 71 HTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp SEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred CCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence 46899999999864 5789999997664 356778888899986566777888888753
No 27
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=94.58 E-value=0.12 Score=38.55 Aligned_cols=70 Identities=16% Similarity=0.373 Sum_probs=49.6
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhcccCcc------eeeecc-c-----------ceeE
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHG------MALQLE-P-----------QGLL 63 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~------~~l~LE-P-----------QG~L 63 (147)
+..|++.|.+.+.. ...|.|.||-+|. -.+-|-..+-|++++....++ +..+++ | .|.|
T Consensus 54 nP~WnE~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~l 133 (167)
T 2cjs_A 54 QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRI 133 (167)
T ss_dssp SCEEEEEEEEECCCTTSEEEEEEEECCSSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEeeCCCCEEEEEEEECCCCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceE
Confidence 56899999999974 4679999997773 236677888999987654333 222222 3 3448
Q ss_pred EEEEEeeCCcc
Q psy3348 64 FAEIKFLNPMI 74 (147)
Q Consensus 64 faevtF~nPvi 74 (147)
+++++|..|.-
T Consensus 134 ll~~~~e~~~~ 144 (167)
T 2cjs_A 134 LLDAHFELPLD 144 (167)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEeecCCC
Confidence 88999988873
No 28
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=94.38 E-value=0.058 Score=38.44 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=42.4
Q ss_pred cccccceeeeee--c-ccceeeEEEEEecC----cccccceeeehhhhhc-ccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDL--D-KSRELEIGVYWRDW----RSLCGVKFLRLEEFID-DIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~L--e-RsRELEI~VywrD~----RsLCav~flRLEdfLD-n~~h~~~l~LEPQ 60 (147)
...|++.|.+++ + -.+.|+|.||-.|. -.+.|-..+.|.++.. ......+.+|.|+
T Consensus 75 nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 75 DPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp SCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 467999999998 3 33669999997775 2477888899999885 5666677777764
No 29
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=94.35 E-value=0.046 Score=38.80 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=44.6
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecccc
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQ 60 (147)
...|++.|.+++.. .+.|.|.||-+|. ..+.|-..+.|.++-....+..+++|+|.
T Consensus 89 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 89 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp SCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred CCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 56899999999864 5889999997764 34677888899998777777788888763
No 30
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=94.08 E-value=0.052 Score=39.70 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=46.7
Q ss_pred cccccceeeeeec-ccceeeEEEE-EecC---cccccceeeehhhhhcccCcceeeeccccee
Q psy3348 5 NQAWDQRFSIDLD-KSRELEIGVY-WRDW---RSLCGVKFLRLEEFIDDIRHGMALQLEPQGL 62 (147)
Q Consensus 5 ~q~WDQ~F~I~Le-RsRELEI~Vy-wrD~---RsLCav~flRLEdfLDn~~h~~~l~LEPQG~ 62 (147)
...|+++|.+++. ....|+|.|| -.|. ..+.|-..+.|+++...+.+..+.+|+|.+.
T Consensus 80 nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 142 (171)
T 2q3x_A 80 DPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSS 142 (171)
T ss_dssp SCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred CCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccc
Confidence 4679999999984 4688999999 5554 2477888889999987777888999998875
No 31
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=93.96 E-value=0.14 Score=36.39 Aligned_cols=45 Identities=16% Similarity=0.471 Sum_probs=34.6
Q ss_pred cccccceeeeeecc-cceeeEEEEEecC--cccccceeeehhhhhccc
Q psy3348 5 NQAWDQRFSIDLDK-SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDI 49 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR-sRELEI~VywrD~--RsLCav~flRLEdfLDn~ 49 (147)
+..|++.|.+++.. ...|.|.||-+|. ..+-|-..+-|++++...
T Consensus 45 nP~WnE~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 45 QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSN 92 (131)
T ss_dssp SCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCS
T ss_pred CceECCEEEEEEeCCCCeEEEEEEECCCCCCCeEEEEEEEHHHhhhcC
Confidence 56899999999974 4679999997773 235677788898887654
No 32
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=93.61 E-value=0.09 Score=35.71 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=37.3
Q ss_pred cccccceeeeee-c----ccceeeEEEEEecC-----cccccceeeehhhhhcccCcceeeec
Q psy3348 5 NQAWDQRFSIDL-D----KSRELEIGVYWRDW-----RSLCGVKFLRLEEFIDDIRHGMALQL 57 (147)
Q Consensus 5 ~q~WDQ~F~I~L-e----RsRELEI~VywrD~-----RsLCav~flRLEdfLDn~~h~~~l~L 57 (147)
...|++.|.+++ . ....|+|.||-+|. ..+.|-..+.|.+++.+. ...+.+|
T Consensus 67 nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 67 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp SCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 568999999995 2 46899999997765 346777888898887643 5555554
No 33
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=93.42 E-value=0.16 Score=35.18 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=41.7
Q ss_pred cccccceeeee-ec----ccceeeEEEEEecC---cccccceeeehhhhhcc-cCcceeeecccc
Q psy3348 5 NQAWDQRFSID-LD----KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDD-IRHGMALQLEPQ 60 (147)
Q Consensus 5 ~q~WDQ~F~I~-Le----RsRELEI~VywrD~---RsLCav~flRLEdfLDn-~~h~~~l~LEPQ 60 (147)
...|++.|.++ +. ..+.|+|.||-.|. ..+-|-..+.|.++... ....++++|+|.
T Consensus 70 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp SCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 56899999985 54 45799999997764 34677788899998765 344677887764
No 34
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=93.16 E-value=0.088 Score=38.50 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=40.4
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhhhc-ccCcceeeeccc
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEFID-DIRHGMALQLEP 59 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdfLD-n~~h~~~l~LEP 59 (147)
...|++.|.+++.. .+.|+|.||-.|. ..+-|-..+.|+++.+ ......+.+|.|
T Consensus 93 nP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~ 155 (155)
T 2z0u_A 93 TLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155 (155)
T ss_dssp SEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred CCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence 46799999999875 5789999997764 3455667778888854 455566666654
No 35
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=91.95 E-value=0.22 Score=46.34 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=60.4
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC--cccccceeeehhhhhcccCcceeeecccceeEEEEE--Eee-CCccCCC
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW--RSLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEI--KFL-NPMISRK 77 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~--RsLCav~flRLEdfLDn~~h~~~l~LEPQG~Lfaev--tF~-nPvieR~ 77 (147)
...|++.|.+++.. ...|+|.||-.|. ..+.|-..+.|+++.....+..+++|+|++-+.++. +++ ++.+.-.
T Consensus 68 NPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~~e~~l~~~~e~c~~l~VRla 147 (749)
T 1cjy_A 68 NPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFS 147 (749)
T ss_dssp SCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEETTTEEEEEEECCEECCSCSSEEC
T ss_pred CCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecCCCceEeeecccccccccccccc
Confidence 46799999999975 6789999997765 456788889999998888899999999997666543 222 2222222
Q ss_pred chhhHHHHHH
Q psy3348 78 PKLQRQRKIF 87 (147)
Q Consensus 78 pkLqRQkriF 87 (147)
-.|..+.+-|
T Consensus 148 ~~Ls~eEk~f 157 (749)
T 1cjy_A 148 MALCDQEKTF 157 (749)
T ss_dssp SSCCHHHHHH
T ss_pred cccchhhhhh
Confidence 3455555566
No 36
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=89.14 E-value=0.72 Score=38.30 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=48.3
Q ss_pred cccccceeeeeeccc--ceeeEEEEEecC---cccccceeeehhhhhcccC----cceeeec--ccceeEEEEEEe
Q psy3348 5 NQAWDQRFSIDLDKS--RELEIGVYWRDW---RSLCGVKFLRLEEFIDDIR----HGMALQL--EPQGLLFAEIKF 69 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs--RELEI~VywrD~---RsLCav~flRLEdfLDn~~----h~~~l~L--EPQG~LfaevtF 69 (147)
...|++.|.+++... +.|.|.||-+|. ..+.|-..+.|.++..... ....+.| .+.|.|.+.+.+
T Consensus 431 nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l 506 (510)
T 3jzy_A 431 NPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDL 506 (510)
T ss_dssp SCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEE
T ss_pred CCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEE
Confidence 568999999988643 569999997775 3578888999999987543 3333444 478999888765
No 37
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=88.88 E-value=0.57 Score=31.77 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=30.0
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhh
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEE 44 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEd 44 (147)
...|++.|.+++... ..|+|.||-+|. ..+.|-..+-|.+
T Consensus 65 nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (138)
T 3n5a_A 65 NPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111 (138)
T ss_dssp SCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSS
T ss_pred CCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEcccc
Confidence 567999999998654 589999997764 2356666777764
No 38
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=88.67 E-value=0.8 Score=41.06 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=48.9
Q ss_pred cccccceeeeeecc--cceeeEEEEEecC---cccccceeeehhhhhcccCcceeeec-----c--cceeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDLDK--SRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQL-----E--PQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR--sRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~L-----E--PQG~LfaevtF~n 71 (147)
...|++.|.+++.- ...|.|.||-.|. ..+.|-..+.|.++....+ .++| + +.|.||+.|.|.|
T Consensus 549 NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~r---~v~L~d~~g~~~~~~~L~v~i~~~~ 624 (624)
T 1djx_A 549 NPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR---HVHLLSKNGDQHPSATLFVKISIQD 624 (624)
T ss_dssp SCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEEE---EEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred CCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCcE---EEeCCCCCcCCCCceEEEEEEEEEC
Confidence 56799999998864 3478999997663 4678888999999877654 3444 2 4689999999875
No 39
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=86.54 E-value=0.22 Score=42.83 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=17.1
Q ss_pred ccccccceeeee-ecccceeeEEEEEe-c------CcccccceeeehhhhhcccCcceeeecc-----------------
Q psy3348 4 GNQAWDQRFSID-LDKSRELEIGVYWR-D------WRSLCGVKFLRLEEFIDDIRHGMALQLE----------------- 58 (147)
Q Consensus 4 s~q~WDQ~F~I~-LeRsRELEI~Vywr-D------~RsLCav~flRLEdfLDn~~h~~~l~LE----------------- 58 (147)
....|++.|.++ +....+|+|.||-. | ...+.|...+.|+++.....+..+.+|+
T Consensus 53 lnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~ 132 (483)
T 3bxj_A 53 DTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGG 132 (483)
T ss_dssp ------CCEECC------------------------------------------CCEECC--------------------
T ss_pred CCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccc
Confidence 356899999998 55678999999852 2 2357788888999988777777777773
Q ss_pred ------------cceeEEEEEEeeCCc
Q psy3348 59 ------------PQGLLFAEIKFLNPM 73 (147)
Q Consensus 59 ------------PQG~LfaevtF~nPv 73 (147)
+.|.|.+.+.|..-.
T Consensus 133 ~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 133 GSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp ------------------CEEEEEECC
T ss_pred cccccccccCCCCCceEEEEEEeeeee
Confidence 358999999997544
No 40
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=85.75 E-value=1.1 Score=31.65 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=29.3
Q ss_pred ccccccceeeeeecc----cceeeEEEEEecC---cccccceeeehh
Q psy3348 4 GNQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLE 43 (147)
Q Consensus 4 s~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLE 43 (147)
....|++.|.+++.. ...|+|.||-.|. ..+.|-..+-|.
T Consensus 73 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~ 119 (159)
T 1tjx_A 73 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119 (159)
T ss_dssp SSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETT
T ss_pred CCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCC
Confidence 356899999999864 4679999997765 235566666776
No 41
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=85.59 E-value=1 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=29.8
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC---cccccceeeehhh
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW---RSLCGVKFLRLEE 44 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~---RsLCav~flRLEd 44 (147)
...|++.|.+++... +.|+|.||-.|. ..+.|-..+-|.+
T Consensus 79 nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 79 NAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp SEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred CCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 568999999998764 789999997663 2355666666666
No 42
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=85.23 E-value=2.8 Score=32.76 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=39.4
Q ss_pred cccccceeeeeecc----cceeeEEEEEecCc---ccccceee-ehhhhhcc-cCcceeeeccc-------ceeEEEEEE
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDWR---SLCGVKFL-RLEEFIDD-IRHGMALQLEP-------QGLLFAEIK 68 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~R---sLCav~fl-RLEdfLDn-~~h~~~l~LEP-------QG~Lfaevt 68 (147)
...|++.|.+++.. .+.|+|.||-.|.- .+-|-..+ .|-++.+. .....+.+|++ .|.|.+.+.
T Consensus 67 nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~ 146 (296)
T 1dqv_A 67 NPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLC 146 (296)
T ss_dssp SCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEE
T ss_pred CCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEE
Confidence 56899999999853 35899999976641 22222223 13344442 23345555554 377777766
Q ss_pred ee
Q psy3348 69 FL 70 (147)
Q Consensus 69 F~ 70 (147)
|.
T Consensus 147 y~ 148 (296)
T 1dqv_A 147 YL 148 (296)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 43
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=84.30 E-value=0.42 Score=34.23 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=30.4
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehhhh
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLEEF 45 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLEdf 45 (147)
...|++.|.+++.. .+.|+|.||-+|. ..+.|-..+-|.++
T Consensus 86 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 86 NPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred CCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 56899999999965 6799999997764 23556666666664
No 44
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=72.39 E-value=6.1 Score=35.09 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=43.8
Q ss_pred cccccceeeeee---cccceeeEEEEEecCc---ccccceeeehhhhhcccCcceeeecccceeEEEEEEe-eCCccC
Q psy3348 5 NQAWDQRFSIDL---DKSRELEIGVYWRDWR---SLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKF-LNPMIS 75 (147)
Q Consensus 5 ~q~WDQ~F~I~L---eRsRELEI~VywrD~R---sLCav~flRLEdfLDn~~h~~~l~LEPQG~LfaevtF-~nPvie 75 (147)
...|++.|.+.+ +..+.|+|.||=.|.- .+=|-..+-|. ...|.+.+.|. .|.|++.++. ++|.+.
T Consensus 437 NP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~----~g~~~~~~~l~-~G~l~~~~~~~c~p~l~ 509 (540)
T 3nsj_A 437 NPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH----SGFHEVTCELN-HGRVKFSYHAKCLPHLT 509 (540)
T ss_dssp SCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC----SEEEEEEEECS-SSEEEEEEEEEECTTEE
T ss_pred CCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee----CCcEEEEEEcC-CeEEEEEEEEEECCCCC
Confidence 567999999874 3678899999955542 22333333333 23467788877 6899988665 566643
No 45
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=65.28 E-value=8.7 Score=36.47 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=49.5
Q ss_pred cccccc-eeeee-e--cccceeeEEEEEecCcccccceeeehhhhhcccCcceeeec-------ccceeEEEEEEeeCCc
Q psy3348 5 NQAWDQ-RFSID-L--DKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQL-------EPQGLLFAEIKFLNPM 73 (147)
Q Consensus 5 ~q~WDQ-~F~I~-L--eRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~L-------EPQG~LfaevtF~nPv 73 (147)
+..|++ .|.+. + .-.-.|.|.||=.| ..+-|-..|.|..+--..|| |+| .+.|.||+.|.+.+.+
T Consensus 772 NPvWnEe~F~F~~V~~pela~Lrf~V~D~d-ddfiG~~~lpL~~L~~GyR~---vpL~~~~g~~l~~atLfv~i~~~~~~ 847 (885)
T 3ohm_B 772 NPVWDEEPFDFPKVVLPTLASLRIAAFEEG-GKFVGHRILPVSAIRSGYHY---VCLRNEANQPLCLPALLIYTEASDYI 847 (885)
T ss_dssp SCBCCCCCEEEEEESCGGGCEEEEEEEETT-TEEEEEEEEETTTCCCEEEE---EEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred CCeeccceeEEeeEEcCCcCEEEEEEEcCC-ccEEeeEEEEHHHcCCCceE---EEecCCCCCccCceEEEEEEEEEecC
Confidence 367999 68877 3 34457899999655 56677778889887666665 444 3589999999999977
Q ss_pred cC
Q psy3348 74 IS 75 (147)
Q Consensus 74 ie 75 (147)
-.
T Consensus 848 ~~ 849 (885)
T 3ohm_B 848 PD 849 (885)
T ss_dssp CG
T ss_pred Cc
Confidence 43
No 46
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=56.10 E-value=9.5 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=26.5
Q ss_pred cccccceeeeeecc----cceeeEEEEEecC---cccccceeeehh
Q psy3348 5 NQAWDQRFSIDLDK----SRELEIGVYWRDW---RSLCGVKFLRLE 43 (147)
Q Consensus 5 ~q~WDQ~F~I~LeR----sRELEI~VywrD~---RsLCav~flRLE 43 (147)
...|++.|.+++.. .+.|+|.||-+|. ..+-|-..+-|.
T Consensus 199 nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~ 244 (284)
T 2r83_A 199 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244 (284)
T ss_dssp SCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETT
T ss_pred CCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCC
Confidence 46899999998854 4679999996554 234444455554
No 47
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=43.00 E-value=52 Score=24.96 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=38.5
Q ss_pred cccccceeeeee----cccceeeEEEEEecC---cccccceeeehhhhhcccCcceeeecc------cceeEEEEEEeeC
Q psy3348 5 NQAWDQRFSIDL----DKSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDIRHGMALQLE------PQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ~F~I~L----eRsRELEI~VywrD~---RsLCav~flRLEdfLDn~~h~~~l~LE------PQG~LfaevtF~n 71 (147)
...||+.|..+| +.+..|+|.||=.+- ..+=|-.-|=|.+++...+-.+...|. ..|.+-++|.|.-
T Consensus 61 npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 61 VADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA 140 (144)
T ss_dssp CEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence 346999999986 567889999994432 222333334455555443322222221 1366666777754
Q ss_pred C
Q psy3348 72 P 72 (147)
Q Consensus 72 P 72 (147)
|
T Consensus 141 p 141 (144)
T 3l9b_A 141 A 141 (144)
T ss_dssp T
T ss_pred C
Confidence 4
No 48
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=42.33 E-value=38 Score=31.76 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=47.2
Q ss_pred cccccce-eeee-e--cccceeeEEEEEecCcccccceeeehhhhhcccCcceeeec-------ccceeEEEEEEeeCCc
Q psy3348 5 NQAWDQR-FSID-L--DKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQL-------EPQGLLFAEIKFLNPM 73 (147)
Q Consensus 5 ~q~WDQ~-F~I~-L--eRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~L-------EPQG~LfaevtF~nPv 73 (147)
+..|++. |+++ + .-..-|.|.||=.| ..+-|-..+.|..+--..|| |+| -+.+.||+.|...+.+
T Consensus 698 NPvWNE~~F~F~~v~~pela~Lrf~V~D~d-ddfiG~~~ipL~~L~~GyR~---vpL~~~~g~~~~~atLfv~i~~~~~~ 773 (816)
T 3qr0_A 698 DPYYDEKVFVFKKVVLPDLAVVRIIVSEEN-GKFIGHRVMPLDGIKPGYRH---VPLRNESNRPLGLASVFAHIVAKDYV 773 (816)
T ss_dssp CCBCCCCCEEEEEESCGGGCEEEEEEEETT-SCEEEEEEEESTTCCCEEEE---EEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred CCeEcCceeEEccccCCCccEEEEEEEecC-CCeeeEEEEEHHHcCCcceE---EEEeCCCCCCCCceEEEEEEEEEecC
Confidence 4679998 8877 3 34456888888443 56777788898887766664 444 2458999999998776
Q ss_pred c
Q psy3348 74 I 74 (147)
Q Consensus 74 i 74 (147)
-
T Consensus 774 ~ 774 (816)
T 3qr0_A 774 S 774 (816)
T ss_dssp C
T ss_pred c
Confidence 3
No 49
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=40.82 E-value=60 Score=30.08 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=43.2
Q ss_pred cccccc-eeee-ee--cccceeeEEEEEecCcccccceeeehhhhhcccCcceeeec----ccceeEEEEEEeeC
Q psy3348 5 NQAWDQ-RFSI-DL--DKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHGMALQL----EPQGLLFAEIKFLN 71 (147)
Q Consensus 5 ~q~WDQ-~F~I-~L--eRsRELEI~VywrD~RsLCav~flRLEdfLDn~~h~~~l~L----EPQG~LfaevtF~n 71 (147)
+..|++ .|.+ .+ ...-.|.|.||=.| ..+-|-..+.|..+-...+|---.+. .+-+.||+.|.+.|
T Consensus 726 NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d-~d~iG~~~ipl~~L~~G~r~v~L~~~~g~~~~~~~Lfv~i~~~~ 799 (799)
T 2zkm_X 726 NPVWKEEPFVFEKILMPELASLRVAVMEEG-NKFLGHRIIPINALNSGYHHLCLHSESNMPLTMPALFIFLEMKD 799 (799)
T ss_dssp SCBCCCCCEEEEEESSGGGCEEEEEEEETT-TEEEEEEEEEGGGBCCEEEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred CCeeecceEEEEEEccCCccEEEEEEEEeC-CCccceEeeehhhcCCCcEEEeccCCCCCCCCceEEEEEEEEEC
Confidence 568999 6888 55 33336888998555 56667777888887665554111111 24588999888764
No 50
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=35.51 E-value=10 Score=22.38 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.1
Q ss_pred CchhhHHHHHH-Hhh
Q psy3348 77 KPKLQRQRKIF-KQQ 90 (147)
Q Consensus 77 ~pkLqRQkriF-k~k 90 (147)
+.|.+.||.|| +.+
T Consensus 12 KKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 12 KKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 46889999999 544
No 51
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=34.97 E-value=36 Score=29.90 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=31.5
Q ss_pred cccccceeeeeec---ccceeeEEEEEecC---cccccceeeehhhhhccc
Q psy3348 5 NQAWDQRFSIDLD---KSRELEIGVYWRDW---RSLCGVKFLRLEEFIDDI 49 (147)
Q Consensus 5 ~q~WDQ~F~I~Le---RsRELEI~VywrD~---RsLCav~flRLEdfLDn~ 49 (147)
...|++.|.+++. ..+.|.|+||-.|. ..+-|-..+.|.++....
T Consensus 221 nP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~ 271 (674)
T 3pfq_A 221 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271 (674)
T ss_dssp SCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC
T ss_pred CCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC
Confidence 4679999999884 45779999996554 234455566777776653
No 52
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=29.79 E-value=18 Score=28.14 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.7
Q ss_pred cccccceeeeeeccc----ceeeEEEEEecC
Q psy3348 5 NQAWDQRFSIDLDKS----RELEIGVYWRDW 31 (147)
Q Consensus 5 ~q~WDQ~F~I~LeRs----RELEI~VywrD~ 31 (147)
...|++.|.+++... +.|+|.||-+|.
T Consensus 201 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 231 (296)
T 1dqv_A 201 NPTYNEALVFDVAPESVENVGLSIAVVDYDC 231 (296)
T ss_dssp SCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred CCeECceEEEEcCHHHccCcEEEEEEEeCCC
Confidence 467999999988653 579999995543
Done!