RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3348
         (147 letters)



>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
           nucleotide-binding, diacylglycerol binding,
           serine/threonine-protein kinase, transferase; 1.75A
           {Homo sapiens}
          Length = 157

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 8   WDQRFSIDLDKSRELEIGVYWRDWRS---LCGVKFLRLEEFIDDIRHG----MALQLEPQ 60
           +++ F  ++     LE+ V+               L+ +E +            + LEP+
Sbjct: 87  YNEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE 146

Query: 61  GLLFAEIKF 69
           G +F  I  
Sbjct: 147 GKVFVVITL 155


>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
           phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
           b.7.1.1
          Length = 136

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 8   WDQRFSIDLDKSRELEIGVYWRDWRS---LCGVKFLRLEEFIDDIRHGMA--LQLEPQGL 62
           W   F  D+   R++E+ V+               ++ EE + +        + LEP+G 
Sbjct: 65  WHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGK 124

Query: 63  LFAEIKF 69
           ++  I  
Sbjct: 125 VYVIIDL 131


>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
           phosphotyrosine binding, TCR, T-cell, diacylglycerol,
           phorbol ester, structural genomics; NMR {Homo sapiens}
          Length = 138

 Score = 30.4 bits (68), Expect = 0.11
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 7   AWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHG-----MALQLEPQG 61
            WD  F   ++K R ++I V  ++   +     + L    +  R       + L+L+PQG
Sbjct: 62  PWDSTFDAHINKGRVMQIIVKGKNVDLISETT-VELYSLAERCRKNNGKTEIWLELKPQG 120

Query: 62  LLFAEIKF 69
            +    ++
Sbjct: 121 RMLMNARY 128


>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
           sapiens} SCOP: b.7.1.1
          Length = 126

 Score = 30.4 bits (69), Expect = 0.11
 Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 8   WDQ--RFSIDLDKSRELEIGVYWRDWRS--LCGVKFLRLEEFIDDIRHGMALQLEPQGLL 63
           W++   F +D ++   LEI +   ++      G     +       +  +         +
Sbjct: 56  WNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 115

Query: 64  FAEIKF 69
             E+  
Sbjct: 116 VLEMSL 121


>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
           conjugation pathway, structural genomics consortium,
           SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
          Length = 173

 Score = 27.9 bits (62), Expect = 0.98
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 8   WDQRFSIDLDKSRELEIGVYWRDWRS-----LCGVKFLRLEEFIDDIRHGMA---LQLEP 59
           W Q  ++ +    +L   V+    ++     L G   L + E +      +    + L+ 
Sbjct: 83  WKQPLTVIVTPVSKLHFRVW--SHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQL 140

Query: 60  QG 61
            G
Sbjct: 141 GG 142


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 2.2
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 56/125 (44%)

Query: 33  SLCGVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQRKIFKQQGK 92
           S+  +   +++++++         L     +          IS    L            
Sbjct: 340 SISNLTQEQVQDYVNKTNS----HLPAGKQVE---------IS----L-----------V 371

Query: 93  NFPRANQMNINVATWG----------RLLKRSAPS--IQNN-----RRPLPS---LPHDA 132
           N  +    N+ V+  G           L K  APS   Q+      R+   S   LP  +
Sbjct: 372 NGAK----NLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425

Query: 133 --HSH 135
             HSH
Sbjct: 426 PFHSH 430



 Score = 26.6 bits (58), Expect = 4.6
 Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 123 RPLPSLPHDAHSHSESPPNSEHYY 146
           RPL +L H +  H    P +  + 
Sbjct: 7   RPL-TLSHGSLEHVLLVPTASFFI 29


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,325,416
Number of extensions: 125650
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 11
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)