RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3348
         (147 letters)



>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 123

 Score = 33.2 bits (75), Expect = 0.003
 Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 5   NQAWDQRFSIDLDKSRELEIGVYWRDWRSLCGVKFLRLEEFIDDIRHG-----MALQLEP 59
              W   F   + + R ++I +             + +    +  +         L L+P
Sbjct: 52  YPEWKSTFDAHIYEGRVIQIVLMRAAEDP-MSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110

Query: 60  QGLLFAEIKF 69
           Q  +   +++
Sbjct: 111 QAKVLMCVQY 120


>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
           (Rattus rattus) [TaxId: 10117]}
          Length = 136

 Score = 32.9 bits (74), Expect = 0.005
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 5   NQAWDQRFSIDLDKSRELEIGVYWRDWRSL---CGVKFLRLEEFIDDIRHGMA--LQLEP 59
           + AW   F  D+   R++E+ V+               ++ EE + +        + LEP
Sbjct: 62  SPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP 121

Query: 60  QGLLFAEIKF 69
           +G ++  I  
Sbjct: 122 EGKVYVIIDL 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 582,610
Number of extensions: 25072
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)