RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3349
(111 letters)
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 142 bits (361), Expect = 3e-43
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
LL+K+P++RLG DA++V + FF I W++++ +++ PPF P VT D FD+
Sbjct: 237 AGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDD 296
Query: 76 EFTSEKPELTPPKDPRP------LTDDEQNLFKDFTYMADW 110
EFT++ +TPP +EQ +F+DF Y+ADW
Sbjct: 297 EFTAQSITITPPDRYDSLGLLELDQREEQEMFEDFDYIADW 337
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 138 bits (350), Expect = 2e-41
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
K L+ K+P +RLG D+K+ AFFR+I WE+L + ++PP+ P + NFD
Sbjct: 253 KGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKACGR-NAENFDR 311
Query: 76 EFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
FT P LTPP D + + +Q+ F+ F+++
Sbjct: 312 FFTRHPPVLTPP-DQEVIRNIDQSEFEGFSFVNS 344
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 135 bits (341), Expect = 5e-40
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 16 KELLRKNPERRLGSSERDAE-DVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFD 74
K + KNP RLGS + E + + FF+ I W +L HR+++PPF P + DVSNFD
Sbjct: 256 KSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSREDVSNFD 315
Query: 75 EEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
+F E+P LTP D L Q+ F++F Y++
Sbjct: 316 PDFIKEEPVLTPI-DEGHLPMINQDEFRNFEYVSP 349
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 133 bits (336), Expect = 2e-39
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 16 KELLRKNPERRLGSSERDA-EDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFD 74
K L K+P+ RLG + D++ FFR++ W+ + ++V PPF P ++ + NFD
Sbjct: 251 KSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFD 310
Query: 75 EEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMA 108
+FT+E +LTP D + +Q+ F+ F Y+
Sbjct: 311 SQFTNEPVQLTPD-DDDIVRKIDQSEFEGFEYIN 343
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 137 bits (345), Expect = 3e-39
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
K L+ K+P +RLG D+K+ AFFR+I WE+L + ++PP+ P + + NFD
Sbjct: 574 KGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKASGR-NAENFDR 632
Query: 76 EFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
FT P LTPP D + + +Q+ F+ F+++
Sbjct: 633 FFTRHPPVLTPP-DQEVIRNIDQSEFEGFSFVNS 665
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 132 bits (334), Expect = 9e-39
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 16 KELLRKNPERRLGSSERDA-EDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFD 74
K L K+P+ RLG + D++ FFR++ W+ + ++V PPF P ++ + NFD
Sbjct: 294 KSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFD 353
Query: 75 EEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
+FT+E +LTP D + +Q+ F+ F Y+
Sbjct: 354 SQFTNEPVQLTPD-DDDIVRKIDQSEFEGFEYINP 387
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 131 bits (331), Expect = 1e-38
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+L + PE+RLG D+++ FR I WEEL + + PPF P V D SNFD+
Sbjct: 250 VKLFVREPEKRLGV----RGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFDCSNFDK 305
Query: 76 EFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMA 108
EF +EKP L+ D + +QN+F++F++M
Sbjct: 306 EFLNEKPRLSFA-DRALINSMDQNMFRNFSFMN 337
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 123 bits (312), Expect = 1e-35
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+ LL+K+ +RLG+ + D ++K FF I W++L+++++ PPF P V+ D+ +FD
Sbjct: 271 EGLLQKDRTKRLGAKD-DFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPNDLRHFDP 329
Query: 76 EFTSEKPELTPPKDPR-----PLTDDEQNLFKDFTYMAD 109
EFT E K P + F F+Y
Sbjct: 330 EFTEEPVPNAIGKAPDSVLVTASVKEAAEAFLGFSYAPP 368
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 121 bits (306), Expect = 4e-35
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
K+LL++N RLG+ DA +V+ FFRHI WEELL R+V+PPF P + DVS FD
Sbjct: 253 KKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDS 312
Query: 76 EFTSEKPELTPP 87
+FT + P +P
Sbjct: 313 KFTRQTPVDSPD 324
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 113 bits (284), Expect = 7e-32
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+ L ++NP RLG+ E++K+ +FF I W +L R + PPF P D FD
Sbjct: 258 RMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDP 317
Query: 76 EFTSEKPE 83
EFT++ P+
Sbjct: 318 EFTAKTPK 325
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 105 bits (264), Expect = 2e-28
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
LL+K+P++RLG DA+++ + FF I W+ + +++ PPF P VT D FDE
Sbjct: 381 SGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDE 440
Query: 76 EFTSE 80
EFT++
Sbjct: 441 EFTAQ 445
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 104 bits (261), Expect = 4e-28
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 16 KELLR---KNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSN 72
K L+ + E RLG E++K+ FF++ QW R P VP ++ D SN
Sbjct: 305 KNLICAFLTDREVRLGR--NGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSN 362
Query: 73 FDEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
FD+ + E T P Q F FTY ++
Sbjct: 363 FDDLEEDKGEEETFPIP--KAFVGNQLPFVGFTYYSN 397
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 104 bits (261), Expect = 5e-28
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 16 KELLRK---NPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSN 72
K+L+R+ + E RLG ED KK FF I W+ + R + P++P V+ D SN
Sbjct: 314 KDLIRRLICSREHRLGQ--NGIEDFKKHPFFSGIDWDNI--RNCEAPYIPEVSSPTDTSN 369
Query: 73 FDEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
FD + K T P F FTY +
Sbjct: 370 FDVDDDCLKNSETMPPPTHTAFSGHHLPFVGFTYTSS 406
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 104 bits (260), Expect = 1e-27
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVG--DVSNF 73
+LL K+P RLG A +VK+ F+ + ++ L ++PPF P + DV +
Sbjct: 421 SQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDI 480
Query: 74 DEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMA 108
++ T + EL P +Q+ ++ F +
Sbjct: 481 EQFSTVKGVELEPT---------DQDFYQKFATGS 506
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 104 bits (260), Expect = 1e-27
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPT-----VTDVGDV 70
+ LL+++ RRLG R A++VK+ FFR + W+ + ++ PP +P D D+
Sbjct: 426 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDI 485
Query: 71 SNFDEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMA 108
+FDEE T L D +Q L+++F
Sbjct: 486 GSFDEEDTKGI----------KLLDSDQELYRNFPLTI 513
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 101 bits (254), Expect = 2e-27
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+ LL+ + +R G+ + D+K +F W + R+V+ PF+P GD SNFD
Sbjct: 270 RNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFD- 328
Query: 76 EFTSEKPELTPPKDPRPLTDDEQNLFKDF 104
++ E+ ++ + F +F
Sbjct: 329 DYEEEEIRVSIN-------EKCGKEFTEF 350
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 101 bits (253), Expect = 2e-27
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTD-VGDVSNFD 74
L+ ++ +RLG+ + EDVK +F+ + WE+LL R ++ P+ P + GD S FD
Sbjct: 235 SRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFD 294
Query: 75 EEFTSEKPELTPPKDPRPLTDDEQNLFKDF 104
++ E D +LF+DF
Sbjct: 295 -KYPEEDINYGV-----QGEDPYADLFRDF 318
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 99.4 bits (248), Expect = 3e-26
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 16 KELLRK---NPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSN 72
++ +++ PE RLG A D + FF + W+ L R PPF P D N
Sbjct: 303 RDFIQRLLCPPETRLGR--GGAGDFRTHPFFFGLDWDGL--RDSVPPFTPDFEGATDTCN 358
Query: 73 FDEEFTSEKPELTPPKDPRPLTDDE-----QNLFKDFTYMAD 109
FD ++ + + F ++Y
Sbjct: 359 FDLVEDGLTAMVSGGGETLSDIREGAPLGVHLPFVGYSYSCM 400
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 99.5 bits (248), Expect = 6e-26
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTV-----TDVGDV 70
+ LL+K+PE+RLG + + ++ FR I W +L + PPFVP ++ DV
Sbjct: 425 EALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSRTVYAKNIQDV 484
Query: 71 SNF-----------DEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
F D EF E T P P E +F D
Sbjct: 485 GAFSTVKGVAFEKADTEFFQEFASGTCP-IPWQEEMIETGVFGDLNVWRP 533
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 92.0 bits (229), Expect = 8e-24
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNF 73
+ LL K+P++RLG RDA+++K+ FF+ I W++L ++V PF P + D DVSNF
Sbjct: 298 QRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDVSNF 355
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 82.4 bits (204), Expect = 4e-20
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
K+LL NP++R DV+ + I W+ + +R+ P F+P N D
Sbjct: 252 KKLLEPNPDQRFS----QLSDVQNFPYMNDINWDAVFQKRLIPGFIPNK----GRLNCDP 303
Query: 76 EFTSEKPELTPP---KDPRPLTDDEQNLFKDFT 105
F E+ L K + L E+++ K +
Sbjct: 304 TFELEEMILESKPLHKKKKRLAKKEKDMRKCDS 336
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 54.5 bits (132), Expect = 3e-10
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 16 KELLRKNPERRLGSSER-DAEDVKKQAFFRHIQWEELLHRRVKPPFVP 62
++LL + +RLG E +K FF + WE L + PP +
Sbjct: 264 EKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQ--TPPKLT 309
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 31.4 bits (72), Expect = 0.034
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVT 65
+LLR +P +RL + V + + + RRV PP +
Sbjct: 244 SKLLRYHPPQRLP-----LKGVMEHPWVK------ANSRRVLPPVYQSTQ 282
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 31.6 bits (71), Expect = 0.038
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 12/77 (15%)
Query: 18 LLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDEEF 77
LR E RL + + + R +P G+ +
Sbjct: 347 FLRYPKEDRL-----LPLQAMETPEYEQL-------RTELSAALPLYQTDGEPTREGGAP 394
Query: 78 TSEKPELTPPKDPRPLT 94
S + +T
Sbjct: 395 PSGTSQPDEAGAAEAVT 411
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 30.1 bits (68), Expect = 0.10
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEEL 51
K LRKNP R+ +ED K + E+L
Sbjct: 304 KLFLRKNPAERIT-----SEDALKHEWLADTNIEDL 334
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 29.2 bits (66), Expect = 0.20
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVK 57
+ L+ +P +R G A + + +E++ +K
Sbjct: 265 RLLIDHDPNKRPG-----ARTLLNSGWLPVKHQDEVIKEALK 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.42
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 56/127 (44%)
Query: 9 EVGLERWKELLR---------KNPERRLGSSERDAEDVKKQAFFRHIQ------------ 47
+ L + KEL++ K P + +S A FR +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNS----------ALFRAVGEGNAQLVAIFGG 162
Query: 48 -------WEEL--LHRRVKP---PFVPTVTD-----VGDVSNFDEEFTS--------EKP 82
+EEL L++ + + + + ++ FT E P
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 83 ELTPPKD 89
TP KD
Sbjct: 223 SNTPDKD 229
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 27.3 bits (60), Expect = 0.97
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 18 LLRKNPERRLGSSERDAEDVKKQAFFRHIQWE 49
LR E RL + + ++ E
Sbjct: 343 FLRYPKEDRLL-----PLQAMETPEYEQLRTE 369
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 27.3 bits (60), Expect = 0.98
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 18 LLRKNPERRLGSSERDAEDVKKQAFFRHIQWE 49
L + RRL + + F +Q E
Sbjct: 336 FLNFDRRRRL-----LPLEAMETPEFLQLQNE 362
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 27.2 bits (61), Expect = 1.3
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 45 HI-QWEELLHRRVKPPFVP------TVTDVG-DVSNF 73
HI +W+ R++PP V V VG V
Sbjct: 43 HIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRP 79
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 26.9 bits (60), Expect = 1.3
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRH 45
+L +P+ R AE + R
Sbjct: 286 VMMLEPDPKLRAT-----AEALLALPVLRQ 310
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus
horikoshii OT3, structural genomics; HET: NAD; 2.05A
{Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 26.8 bits (60), Expect = 1.4
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 45 HI-QWEELLHRRVKPPFVP------TVTDVG-DVSNF 73
HI +W E R+KPP + V ++G V
Sbjct: 47 HIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGI 83
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 25.0 bits (55), Expect = 4.9
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 19/50 (38%)
Query: 62 PTVTDVGDVSNFDEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMADWC 111
P+V DV V F + + + FT A WC
Sbjct: 19 PSVVDVYSVEQFRNIMSEDILTVA-----------------WFT--AVWC 49
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 25.4 bits (56), Expect = 5.3
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 16/98 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFR---------HIQWEELLHRRVKPPFVPTVTD 66
+L ++NP R + ++ F + EE + +
Sbjct: 258 SQLFKRNPRDRP-----SVNSILEKGFIAKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPA 312
Query: 67 VGDVSNFDEEFTSEKPELTPP--KDPRPLTDDEQNLFK 102
S + ++T P K PL + K
Sbjct: 313 KRPASGQNSISVMPAQKITKPAAKYGIPLAYKKYGDKK 350
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 5.6
Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 12 LERWKELLRKNPERRLGSSERDAEDVKKQA------FFRHIQWEELLHRRVKPPFVPTVT 65
+ +W+E RK + +S+ ++ +++A + + + E + +
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ--RQSEQVEKNKI-------- 136
Query: 66 DVGDVSNFDEEFTSEKPE 83
+ D+ F +
Sbjct: 137 ---NNRIADKAFYQQPDA 151
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 25.2 bits (55), Expect = 6.3
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHI 46
+++L +P R +A D+ + A F ++
Sbjct: 307 QDMLSPSPTERP-----EATDIIENAIFENL 332
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH)
domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Length = 120
Score = 24.0 bits (52), Expect = 9.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 85 TPPKDPRPLTD 95
+ KDPRPL D
Sbjct: 2 SHMKDPRPLND 12
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.430
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,896,489
Number of extensions: 103853
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 50
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)