RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3349
(111 letters)
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 109 bits (274), Expect = 6e-31
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
LL+K+P++RLG DA++V + FF I W++++ +++ PPF P VT D FD+
Sbjct: 237 AGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDD 296
Query: 76 EFTSEKPELTPPKDPRPL------TDDEQNLFKDFTYMADW 110
EFT++ +TPP L +EQ +F+DF Y+ADW
Sbjct: 297 EFTAQSITITPPDRYDSLGLLELDQREEQEMFEDFDYIADW 337
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 92.9 bits (230), Expect = 1e-24
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+L + PE+RLG D+++ FR I WEEL + + PPF P V D SNFD+
Sbjct: 235 VKLFVREPEKRLGV----RGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFDCSNFDK 290
Query: 76 EFTSEKPELTPPKDPRPLTDDEQNLFKDFTY 106
EF +EKP L+ D + +QN+F++F++
Sbjct: 291 EFLNEKPRLSFA-DRALINSMDQNMFRNFSF 320
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 85.9 bits (212), Expect = 8e-22
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVP-----TVTDVGDV 70
+ LL+++ RRLG R A++VK+ FFR + W+ + ++ PP +P D D+
Sbjct: 241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDI 300
Query: 71 SNFDEEFTSEKPELTPPKDPRPLTDDEQNLFKDFTYMAD 109
+FDEE T L D +Q L+++F
Sbjct: 301 GSFDEEDTKGI----------KLLDSDQELYRNFPLTIS 329
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 78.6 bits (193), Expect = 2e-19
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTD-VGDVSNFD 74
L+ ++ +RLG+ + EDVK +F+ + WE+LL R ++ P+ P + GD S FD
Sbjct: 233 SRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFD 292
Query: 75 EEFTSEKPELTPPKDPRPLTDDEQNLFKDF 104
+ + +DP +LF+DF
Sbjct: 293 KYPEEDINYGVQGEDPY------ADLFRDF 316
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 77.9 bits (191), Expect = 4e-19
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 15 WKELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFD 74
+ LL+ + +R G+ + D+K +F W + R+V+ PF+P GD SNFD
Sbjct: 269 LRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFD 328
Query: 75 EEFTSEKPELTPPKDPRPLTDDEQNLFKDF 104
++ E+ ++ + F +F
Sbjct: 329 -DYEEEEIRVSI-------NEKCGKEFTEF 350
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 66.8 bits (162), Expect = 5e-15
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDV 70
+ LL K+P++RLG RDA+++K+ FF+ I W++L ++V PF P + D DV
Sbjct: 268 QRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDV 322
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 43.5 bits (102), Expect = 9e-07
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 16 KELLRKNPERRLGSSE-RDAEDVKKQAFFRHIQWEELLHRRVKPPFVP 62
++LL + +RLG E +K FF + WE L + PP +
Sbjct: 242 EKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL--HQQTPPKLT 287
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 37.1 bits (85), Expect = 1e-04
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 13/75 (17%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
LL P RL + +FF ++ +P D + NF
Sbjct: 284 SRLLEYTPTARL-----TPLEACAHSFFDELRDPN--------VKLPNGRDTPALFNFTT 330
Query: 76 EFTSEKPELTPPKDP 90
+ S P L P
Sbjct: 331 QELSSNPPLATILIP 345
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 36.7 bits (84), Expect = 2e-04
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPP 59
+ LL K+P++R+ +D + + + ++ L P
Sbjct: 252 RRLLVKDPKKRMT-----IQDSLQHPWIKPKDTQQALSSAWSHP 290
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 362
Score = 33.5 bits (75), Expect = 0.003
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+L+ +P +R DA + + + + L ++ P D+ + E
Sbjct: 309 SPMLQLDPRKRA-----DAGGLVNHPWLK----DTLGMEEIRVPDRELYGSGSDIPGWFE 359
Query: 76 E 76
E
Sbjct: 360 E 360
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 30.8 bits (69), Expect = 0.023
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEE 50
+ L KNP R D + + AF + EE
Sbjct: 279 NKCLIKNPAERA-----DLKQLMVHAFIKRSDAEE 308
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 30.0 bits (67), Expect = 0.044
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
+ L+ K+PE+R E + + + L + + + S + +
Sbjct: 245 RHLMEKDPEKRFT-----CEQALQHPWI---AGDTALDKNIHQSVSEQIKKNFAKSKWKQ 296
Query: 76 EFTS 79
F +
Sbjct: 297 AFNA 300
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
{Rattus norvegicus [TaxId: 10116]}
Length = 328
Score = 28.7 bits (63), Expect = 0.12
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWE 49
+LLR + + RL A + + +F + +
Sbjct: 300 DKLLRYDHQSRLT-----AREAMEHPYFYTVVKD 328
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 28.1 bits (62), Expect = 0.22
Identities = 9/91 (9%), Positives = 23/91 (25%), Gaps = 8/91 (8%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQW---EELLHRRVKPPFVPTVTDVGDVSN 72
++LL +P R+ + + + + ++ D
Sbjct: 261 RKLLLADPNTRMT-----IHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWP 315
Query: 73 FDEEFTSEKPELTPPKDPRPLTDDEQNLFKD 103
+ + RP ++ F D
Sbjct: 316 EPLPPLGRISNYSSLRKHRPQEYSIRDAFWD 346
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 26.4 bits (57), Expect = 0.87
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 83 ELTPPKDPRPLTDDE-QNLFKDFTYM 107
+ P P+T DE + L +F M
Sbjct: 249 DNKLLVIPNPITMDELEELLMEFGIM 274
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 25.6 bits (55), Expect = 1.7
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQW 48
+ L NP +R+ A +F+ ++
Sbjct: 274 LKCLTFNPAKRI-----SAYSALSHPYFQDLER 301
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.4 bits (55), Expect = 2.0
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRH 45
++L +NP R+ D+KK ++
Sbjct: 241 HKILVENPSARIT-----IPDIKKDRWYNK 265
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor
domain {Bacillus subtilis [TaxId: 1423]}
Length = 169
Score = 24.5 bits (53), Expect = 2.9
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 8 GEVGLERWKELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDV 67
++ + + L ++ + D KQ RH +E+ + F+ +
Sbjct: 53 IVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRH--IQEMFAGVIDDEFIEKRNRI 110
Query: 68 GDV 70
+
Sbjct: 111 ASI 113
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 24.7 bits (53), Expect = 3.0
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHI 46
+ L P R E+++ + + +
Sbjct: 236 RWCLALRPSDRPT-----FEEIQNHPWMQDV 261
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 24.4 bits (52), Expect = 3.5
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEE 50
+++L + E+R+ A + +F + E
Sbjct: 282 EKMLVLDAEQRV-----TAGEALAHPYFESLHDTE 311
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 24.5 bits (52), Expect = 3.8
Identities = 3/23 (13%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 83 ELTPPKDPRPLTDDE-QNLFKDF 104
P+P+T + + + +
Sbjct: 246 ANELFVIPKPMTQERLEEILMQY 268
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 348
Score = 24.5 bits (52), Expect = 4.1
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVG-DVSNFD 74
+++L + ++R+ A A+F Q+ + V P+ + + +
Sbjct: 282 EKMLVLDSDKRI-----TAAQALAHAYFA--QYHDPDDEPVADPYDQSFESRDLLIDEWK 334
Query: 75 EEFTSEKPELTPP 87
E PP
Sbjct: 335 SLTYDEVISFVPP 347
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 318
Score = 24.5 bits (52), Expect = 4.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRH 45
+LL +P +R+ D++D FF
Sbjct: 286 DKLLVLDPAQRI-----DSDDALNHDFFWS 310
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 24.2 bits (52), Expect = 4.2
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFR 44
+ +R+N + R +D+ AFF+
Sbjct: 247 EGCIRQNKDERYS-----IKDLLNHAFFQ 270
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 24.2 bits (52), Expect = 4.3
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
K LL+K P +RL D + + + L R+ + +
Sbjct: 264 KNLLQKEPRKRLT-----VHDALEHPWLKGDHSN--LTSRIPSSRYNKIRQ--KIKEKYA 314
Query: 76 EFTSEKPELTPPKDPRPLTDDEQNLFKDF 104
++ + +P + + L ++ +
Sbjct: 315 DWPAPQPAIGRIANFSSLRKHRPQEYQIY 343
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
oxidase HemN {Escherichia coli [TaxId: 562]}
Length = 441
Score = 24.2 bits (51), Expect = 4.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 5 RFVGEVGLERWKELLRKNPERRLG 28
F + G + + + + + PER L
Sbjct: 28 EFSEDFGEQAFLQAVARYPERPLS 51
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 24.3 bits (52), Expect = 4.8
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 20/90 (22%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVT------DVGD 69
+ LL+ P +R+ + + + K P P T D
Sbjct: 253 RNLLKTEPTQRMT-----ITEFMNHPWIM---------QSTKVPQTPLHTSRVLKEDKER 298
Query: 70 VSNFDEEFTSEKPELTPPKDPRPLTDDEQN 99
+ EE TS + + + E
Sbjct: 299 WEDVKEEMTSALATMRVDYEQIKIKKIEDA 328
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 298
Score = 24.1 bits (51), Expect = 5.5
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHI 46
++L +P +R+ A+ FF+ +
Sbjct: 264 SQMLHYDPNKRIS-----AKAALAHPFFQDV 289
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 277
Score = 23.9 bits (51), Expect = 5.9
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFR 44
L P++R AE+ FF+
Sbjct: 251 SRFLVVQPQKRYT-----AEEALAHPFFQ 274
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 23.8 bits (51), Expect = 6.0
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFR 44
LL K + R+ A + + + +
Sbjct: 239 DRLLVKERKSRMT-----ASEALQHPWLK 262
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 23.8 bits (51), Expect = 6.2
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFR 44
L + E+R A+++ + F +
Sbjct: 251 NRCLDMDVEKRGS-----AKELLQHQFLK 274
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 355
Score = 23.8 bits (50), Expect = 7.3
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRHIQWEELLHRRVKPPFVPTVTDVGDVSNFDE 75
++L +P +R+ +D + + W + PP + D +
Sbjct: 292 SKMLVIDPAKRI-----SVDDALQHPYIN--VWYDPAEVEAPPPQIY------DKQLDER 338
Query: 76 EFTSEK 81
E T E+
Sbjct: 339 EHTIEE 344
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
falciparum) [TaxId: 5833]}
Length = 286
Score = 23.7 bits (50), Expect = 7.4
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFR 44
++L+ +P +R+ A+ + A+F+
Sbjct: 262 SKMLKLDPNQRI-----TAKQALEHAYFK 285
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 23.7 bits (50), Expect = 8.0
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 16 KELLRKNPERRLGSSERDAEDVKKQAFFRH 45
+ L NP R+ A K +F +
Sbjct: 261 QGLFLFNPCARI-----TATQALKMKYFSN 285
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.430
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 475,935
Number of extensions: 21606
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 49
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)