Query psy3351
Match_columns 276
No_of_seqs 114 out of 533
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 22:47:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00094 TR_FER Transferrin. 100.0 1.6E-59 3.5E-64 440.5 16.6 200 1-273 92-299 (332)
2 PF00405 Transferrin: Transfer 100.0 1.2E-56 2.5E-61 419.4 8.9 194 1-272 93-296 (330)
3 smart00094 TR_FER Transferrin. 97.9 3.1E-06 6.7E-11 80.7 0.6 29 166-194 187-216 (332)
4 PF00405 Transferrin: Transfer 97.3 4.7E-05 1E-09 72.3 -0.9 23 166-188 190-213 (330)
5 COG3221 PhnD ABC-type phosphat 96.6 0.0037 8.1E-08 59.1 5.8 42 2-45 131-172 (299)
6 PF12974 Phosphonate-bd: ABC t 87.1 0.071 1.5E-06 46.6 -2.6 39 2-42 92-131 (243)
7 TIGR01098 3A0109s03R phosphate 75.2 1.7 3.8E-05 37.5 1.7 41 2-44 128-168 (254)
8 TIGR03431 PhnD phosphonate ABC 64.1 3.6 7.7E-05 36.9 1.3 38 2-41 122-159 (288)
9 PF09084 NMT1: NMT1/THI5 like; 45.0 9.7 0.00021 32.1 0.8 35 8-45 84-118 (216)
10 PF11901 DUF3421: Protein of u 36.9 15 0.00033 30.3 0.7 37 198-237 42-78 (119)
11 COG2358 Imp TRAP-type uncharac 28.7 22 0.00047 34.7 0.4 19 2-22 124-142 (321)
12 TIGR01729 taurine_ABC_bnd taur 27.3 27 0.00058 31.5 0.7 34 8-43 91-124 (300)
13 COG0715 TauA ABC-type nitrate/ 25.6 48 0.001 30.1 2.0 36 8-45 127-162 (335)
14 KOG3889|consensus 20.7 44 0.00096 32.9 0.8 29 199-227 234-263 (371)
No 1
>smart00094 TR_FER Transferrin.
Probab=100.00 E-value=1.6e-59 Score=440.46 Aligned_cols=200 Identities=41% Similarity=0.751 Sum_probs=171.3
Q ss_pred CccCCcCCCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCCccccCCCchhhhhhhhccCCccCCcccccCCCCCCCc
Q psy3351 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNALINKYNPIGDNS 80 (276)
Q Consensus 1 vkk~s~~~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~i~~~~c~~~~kavs~FFs~SC~PGa~~~~y~~~~~~~ 80 (276)
|||+| .|.+|+||||||+||||+++++||++|++.|+++|+|++.+|+ ..++|++||++||+||++.+.| +
T Consensus 92 Vkk~S--~i~sl~dLkGKksChtg~~stsGw~iP~~~L~~~g~i~~~~~~-~~~avs~fFs~sC~PG~~~~~~------~ 162 (332)
T smart00094 92 VKKGS--AIFTWNQLRGKKSCHTGVGRTAGWNIPMGLLYNKLVIRPPNCP-FEKAVSKFFSASCAPGADKPDP------N 162 (332)
T ss_pred EECCC--CCCCHHHhCCCceecCCCCCcchhHHHHHHHHHcCCCCCCCCc-HHHHHHHHhhccccCCCCCCCC------c
Confidence 57777 6789999999999999999999999999999999999998886 5789999999999999976544 4
Q ss_pred hhhchhccCCCCCCCC--CCCCCCCCccccccceec-CCcEEEEechhhHhhhhcccccccccccchhhhhhHHHHHhhh
Q psy3351 81 DRLCELCIGRVPGEKC--TTADPYAGFEGAFRCLVD-KGEVAFLKHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQ 157 (276)
Q Consensus 81 ~nLC~lC~g~~~~~~C--~~~e~Y~G~~GAfRCL~e-~GDVAFvkh~tV~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 157 (276)
+|||+||.|+ .+| +++|+||||+||||||+| +||||||||+||.+++++++
T Consensus 163 ~~LC~lC~g~---~~C~~~~~e~Y~Gy~GA~rCL~eg~GdVAFvk~~tv~~~~~~~~----------------------- 216 (332)
T smart00094 163 SNLCALCAGD---NKCACSSHEPYYGYSGAFRCLAEGAGDVAFVKHSTVFENTDGKN----------------------- 216 (332)
T ss_pred hhhHhhcCCC---CccCCCCCCcccCcchhheeeccCCccEEEEecccHHhhcCCCC-----------------------
Confidence 7999999997 688 788999999999999999 69999999999999987653
Q ss_pred ccCCcccCCccceeccccccchhhcchhhhhhhcccccccCCCccCeEEecCCCCCccCCCCccceeeeeCCceEEEcCC
Q psy3351 158 YSGGLIEGTGAFRCLVDKGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSA 237 (276)
Q Consensus 158 ~s~g~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~dfeLLCpdGtr~pv~~~~~Cnl~~vP~~aVvt~~~ 237 (276)
++.|+.+++++||+||||||+|+||++|++||||++|||+||+|++
T Consensus 217 ----------------------------------~~~wa~~~~~~dy~lLC~dg~r~pi~~~~~C~la~~P~~~vv~~~~ 262 (332)
T smart00094 217 ----------------------------------GADWAKNLKRDDYELLCLDGTRKPVTEYKNCHLARVPSHAVVARKD 262 (332)
T ss_pred ----------------------------------ccccccccCccceEEECCCCCcCCCccCCcceeeeccCCeEEeccc
Confidence 2458999999999999999999999999999999999999999986
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCC--CC---CCCCcceEE
Q psy3351 238 KSTQIRRYYQQFLIKTVQLFGGPVP--PQ---RTQGKNVIL 273 (276)
Q Consensus 238 ~~~~~r~~~~~~L~~~~~lfg~~~~--~~---~~~~~~~~~ 273 (276)
. ....++ .|+.++++||++.+ ++ .+.|||||.
T Consensus 263 ~---~~~~~~-~ll~~~~~~g~~~~~~f~lf~s~~~kdLlF 299 (332)
T smart00094 263 K---KEDVIW-ELLNQQQKFGKDKPSLFQLFGSPTGKDLLF 299 (332)
T ss_pred c---hHHHHH-HHHHHHHHhccCCCCccccccCCCCCccee
Confidence 4 223454 45555558887633 22 345788753
No 2
>PF00405 Transferrin: Transferrin; InterPro: IPR001156 Transferrins are eukaryotic iron-binding glycoproteins that control the level of free iron in biological fluids []. The proteins have arisen by duplication of a domain, each duplicated domain binding one iron atom. Members of the family include blood serotransferrin (siderophilin); milk lactotransferrin (lactoferrin); egg white ovotransferrin (conalbumin); and membrane-associated melanotransferrin. Additional members of this family include inhibitor of carbonic anhydrase (ICA; mammals), major yolk protein (sea urchins), saxiphilin (frog), pacifastin (crayfish), and TTF-1 (algae). Most family members contain two transferrin-like domains of around 340 amino acids, the result of an ancient duplication event []. Each of the duplicated domains can be further divided into two subdomains that form a cleft inside of which the iron atom is bound in iron-transporting transferrin []. The iron-coordinating residues consist of an aspartic acid, two tyrosines and a histidine, as well as an arginine that coordinates a requisite anion. In addition to iron and anion liganding residues, the transferrin-like domain contains conserved cysteine residues involved in disulphide bond formation. Human lactoferrin is a serine peptidase belonging to MEROPS peptidase family S60, clan SR. It is found at high concentrations in all human secretions, where it plays a major role in mucosal defence. Lactoferrin cleaves IgA1 protease at an arginine-rich region defined by amino acids RRSRRSVR and digests Hap at a similar arginine-rich sequence (VRSRRAAR). Ser259 and Lys73 form a catalytic dyad, reminiscent of a number of bacterial serine proteases. ; GO: 0008199 ferric iron binding, 0006826 iron ion transport, 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1JNF_A 1TFD_A 1JW1_A 1DTZ_A 2J4U_X 1I6Q_A 1BIY_A 1CE2_A 1H76_A 1F9B_A ....
Probab=100.00 E-value=1.2e-56 Score=419.37 Aligned_cols=194 Identities=44% Similarity=0.797 Sum_probs=163.1
Q ss_pred CccCCcCCCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCCccccC-CCchhhhhhhhccCCccCCcccccCCCCCCC
Q psy3351 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVID-CNNHVKSVINYFGPSCAVNALINKYNPIGDN 79 (276)
Q Consensus 1 vkk~s~~~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~i~~~~-c~~~~kavs~FFs~SC~PGa~~~~y~~~~~~ 79 (276)
|||++ ++ +|+||||||||||||+++|||++||++|+++++|++.+ ..+..++|++||++||+||+.+ .+
T Consensus 93 Vkk~s--~~-~l~~LrGkksCHtG~g~~aGW~~Pv~~L~~~~~i~~~~~~~~~~~avs~FF~~sC~PGa~~-------~~ 162 (330)
T PF00405_consen 93 VKKSS--NI-TLKDLRGKKSCHTGYGRTAGWNIPVGYLLEKGVIPWTGPDCDVEKAVSDFFSKSCVPGADK-------KN 162 (330)
T ss_dssp EETTS--S--SGGGGTTSEEEESSTTTTTTTHHHHHHHHHHHHCCSSSTTSSHHHHHHHHSSEEE-TTSST-------TT
T ss_pred EecCC--Cc-chhhhcCCCCCCcCcCCcccccccchhhhhcCcCCcccccchhhhHHhhhhcCcccccccc-------cc
Confidence 67877 44 69999999999999999999999999999999999853 2245689999999999999854 34
Q ss_pred chhhchhccCCCCCCCC--CCCCCCCCccccccceec-CCcEEEEechhhHhhhhcccccccccccchhhhhhHHHHHhh
Q psy3351 80 SDRLCELCIGRVPGEKC--TTADPYAGFEGAFRCLVD-KGEVAFLKHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLL 156 (276)
Q Consensus 80 ~~nLC~lC~g~~~~~~C--~~~e~Y~G~~GAfRCL~e-~GDVAFvkh~tV~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 156 (276)
+++||++|.|.. ..+| +++|+||||+||||||+| +||||||+|+||.+++.+++
T Consensus 163 ~~~LC~lC~g~~-~~~C~~~~~e~y~G~~GAlrCL~eg~GDVAFv~~~tv~~~~~~~~---------------------- 219 (330)
T PF00405_consen 163 YSNLCSLCKGDG-ESKCSCSSNEPYYGYEGALRCLVEGKGDVAFVKHTTVFENTDGNN---------------------- 219 (330)
T ss_dssp TSGGGTTSTSST-TSTTTSSTTSTTSHHHHHHHHHHTTSSSEEEEETTHHHHHSTSSS----------------------
T ss_pred CCcccccccCCC-CCcCCCCCcccCCCCCcceEEEecCCCcEEEEeccchhhhccccc----------------------
Confidence 689999999962 3456 678999999999999999 69999999999998876432
Q ss_pred hccCCcccCCccceeccccccchhhcchhhhhhhcccccccCCCccCeEEecCCCCCccCCCCccceeeeeCCceEEEcC
Q psy3351 157 QYSGGLIEGTGAFRCLVDKGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTS 236 (276)
Q Consensus 157 ~~s~g~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~dfeLLCpdGtr~pv~~~~~Cnl~~vP~~aVvt~~ 236 (276)
..+||+||||||+|+||++|++|||+++|||+||+|+
T Consensus 220 -------------------------------------------~~~dy~lLCpdG~~~~v~~~~~C~l~~~p~~~vv~r~ 256 (330)
T PF00405_consen 220 -------------------------------------------QADDYELLCPDGTRAPVSNYKPCNLGKVPWHAVVTRS 256 (330)
T ss_dssp -------------------------------------------HSGGEEEEETTSEEEEGGGGGGSSSEEEESEEEEEES
T ss_pred -------------------------------------------ccccEEEEcCCCCccCcCCCCceeeeEecCceEEEcC
Confidence 2489999999999999999999999999999999998
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCCC--CC---CCC-CcceE
Q psy3351 237 AKSTQIRRYYQQFLIKTVQLFGGPVP--PQ---RTQ-GKNVI 272 (276)
Q Consensus 237 ~~~~~~r~~~~~~L~~~~~lfg~~~~--~~---~~~-~~~~~ 272 (276)
..+ .++.|+++|.++|++||.+.. ++ .+. +||||
T Consensus 257 ~~~--~~~~i~~~L~~~~~~fg~~~~~~f~lF~s~~~~~dll 296 (330)
T PF00405_consen 257 DTS--KKDEIYNLLLKAQQLFGSNKSDDFQLFGSFSYGKDLL 296 (330)
T ss_dssp SSS--GHHHHHHHHHHHHHHHSTTSTSSS-TTSSSTTSSSSS
T ss_pred ccc--cHHHHHHHHHHHHHhhhcccccccccccccCCCCccc
Confidence 764 357899999999999999743 22 333 47776
No 3
>smart00094 TR_FER Transferrin.
Probab=97.89 E-value=3.1e-06 Score=80.70 Aligned_cols=29 Identities=55% Similarity=1.011 Sum_probs=26.3
Q ss_pred Cccceeccc-cccchhhcchhhhhhhcccc
Q psy3351 166 TGAFRCLVD-KGEVAFLKHTTVQEMIEGRI 194 (276)
Q Consensus 166 t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 194 (276)
+||||||+| +|||||+||+||.|++++++
T Consensus 187 ~GA~rCL~eg~GdVAFvk~~tv~~~~~~~~ 216 (332)
T smart00094 187 SGAFRCLAEGAGDVAFVKHSTVFENTDGKN 216 (332)
T ss_pred chhheeeccCCccEEEEecccHHhhcCCCC
Confidence 599999996 69999999999999988874
No 4
>PF00405 Transferrin: Transferrin; InterPro: IPR001156 Transferrins are eukaryotic iron-binding glycoproteins that control the level of free iron in biological fluids []. The proteins have arisen by duplication of a domain, each duplicated domain binding one iron atom. Members of the family include blood serotransferrin (siderophilin); milk lactotransferrin (lactoferrin); egg white ovotransferrin (conalbumin); and membrane-associated melanotransferrin. Additional members of this family include inhibitor of carbonic anhydrase (ICA; mammals), major yolk protein (sea urchins), saxiphilin (frog), pacifastin (crayfish), and TTF-1 (algae). Most family members contain two transferrin-like domains of around 340 amino acids, the result of an ancient duplication event []. Each of the duplicated domains can be further divided into two subdomains that form a cleft inside of which the iron atom is bound in iron-transporting transferrin []. The iron-coordinating residues consist of an aspartic acid, two tyrosines and a histidine, as well as an arginine that coordinates a requisite anion. In addition to iron and anion liganding residues, the transferrin-like domain contains conserved cysteine residues involved in disulphide bond formation. Human lactoferrin is a serine peptidase belonging to MEROPS peptidase family S60, clan SR. It is found at high concentrations in all human secretions, where it plays a major role in mucosal defence. Lactoferrin cleaves IgA1 protease at an arginine-rich region defined by amino acids RRSRRSVR and digests Hap at a similar arginine-rich sequence (VRSRRAAR). Ser259 and Lys73 form a catalytic dyad, reminiscent of a number of bacterial serine proteases. ; GO: 0008199 ferric iron binding, 0006826 iron ion transport, 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1JNF_A 1TFD_A 1JW1_A 1DTZ_A 2J4U_X 1I6Q_A 1BIY_A 1CE2_A 1H76_A 1F9B_A ....
Probab=97.26 E-value=4.7e-05 Score=72.29 Aligned_cols=23 Identities=74% Similarity=1.200 Sum_probs=21.0
Q ss_pred Cccceeccc-cccchhhcchhhhh
Q psy3351 166 TGAFRCLVD-KGEVAFLKHTTVQE 188 (276)
Q Consensus 166 t~~~~~~~~-~~~~~~~~~~~~~~ 188 (276)
.||||||++ +|||||++|+||++
T Consensus 190 ~GAlrCL~eg~GDVAFv~~~tv~~ 213 (330)
T PF00405_consen 190 EGALRCLVEGKGDVAFVKHTTVFE 213 (330)
T ss_dssp HHHHHHHHTTSSSEEEEETTHHHH
T ss_pred CcceEEEecCCCcEEEEeccchhh
Confidence 489999995 89999999999986
No 5
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0037 Score=59.10 Aligned_cols=42 Identities=24% Similarity=0.653 Sum_probs=37.7
Q ss_pred ccCCcCCCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCCcc
Q psy3351 2 KKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGME 45 (276)
Q Consensus 2 kk~s~~~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~i~ 45 (276)
+++| +|.+++||||||-+++-...++|+.+|+..|..++.++
T Consensus 131 ~~ds--~i~sl~dlkgk~~af~d~~StSG~l~P~~~L~~~g~~d 172 (299)
T COG3221 131 RADS--PIKSLEDLKGKRFAFGDPDSTSGYLFPLYYLAKEGGID 172 (299)
T ss_pred eCCC--CcchHHHhcCCeEeccCCCcchhhHhHHHHHHHhcCCC
Confidence 4555 78999999999999999999999999999999998653
No 6
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=87.09 E-value=0.071 Score=46.57 Aligned_cols=39 Identities=28% Similarity=0.639 Sum_probs=30.2
Q ss_pred ccCCcCCCCccCcCCCCCCCCCCCCCCCcchHhHHHHH-hcC
Q psy3351 2 KKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLI-RNG 42 (276)
Q Consensus 2 kk~s~~~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~-~~~ 42 (276)
++++ +|++++||||||-..+....+.||.+|...|+ +.|
T Consensus 92 ~~ds--~i~~l~dL~Gk~v~~~~~~s~sg~l~~~~~L~~~~G 131 (243)
T PF12974_consen 92 RADS--PITSLADLKGKRVAFPDPSSTSGYLIPRYELLREAG 131 (243)
T ss_dssp ETTS--S--SHHHHGGSEEEEE-TT-TTTTHHHHHHTCCCCT
T ss_pred ECCC--CCCChhhcCCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4555 68999999999999999999999999999995 555
No 7
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=75.17 E-value=1.7 Score=37.55 Aligned_cols=41 Identities=27% Similarity=0.607 Sum_probs=31.8
Q ss_pred ccCCcCCCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCCc
Q psy3351 2 KKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGM 44 (276)
Q Consensus 2 kk~s~~~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~i 44 (276)
++++ .|.+++||+|||-+.++-+.+.+|.++...|.+...+
T Consensus 128 ~~d~--~i~~~~dL~gk~I~~~~~~s~~~~~~~~~~l~~~~~~ 168 (254)
T TIGR01098 128 KADS--PIKSLKDLKGKTFAFGDPASTSGYLVPRYQLKKEGGL 168 (254)
T ss_pred ECCC--CCCChHHhcCCEEEeeCCCCccchHhHHHHHHHhcCC
Confidence 4444 5889999999999988766677788888888776543
No 8
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=64.09 E-value=3.6 Score=36.90 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=29.8
Q ss_pred ccCCcCCCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhc
Q psy3351 2 KKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRN 41 (276)
Q Consensus 2 kk~s~~~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~ 41 (276)
++++ +|++++||+|||-+.++.+.+.+|.++...+.+.
T Consensus 122 ~~ds--~i~sl~DL~Gk~v~~~~~~s~~~~~~~~~~l~~~ 159 (288)
T TIGR03431 122 KKDS--PIKSLEDLKGKTFGFVDPNSTSGFLVPSYYLFKK 159 (288)
T ss_pred eCCC--CCCcHHHhCCCEEEeeCCCcchhhHHHHHHHHHh
Confidence 4444 6899999999999988777888888877666554
No 9
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=45.05 E-value=9.7 Score=32.11 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCCcc
Q psy3351 8 DLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGME 45 (276)
Q Consensus 8 ~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~i~ 45 (276)
+|++++||||||- |+....+-...+..++++..+.
T Consensus 84 ~i~~~~DLkGK~i---~v~~~s~~~~~~~~~l~~~g~~ 118 (216)
T PF09084_consen 84 GIKSPADLKGKKI---GVSRGSSSEYFLRALLKKNGID 118 (216)
T ss_dssp S-SSGGGGTTSEE---EESTTSHHHHHHHHHHHHTTT-
T ss_pred CCCCHHHhCCCEE---EEecCcchhHHHHHHHHHhccc
Confidence 6899999999996 3433333344455555554443
No 10
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=36.87 E-value=15 Score=30.28 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=27.1
Q ss_pred CCCccCeEEecCCCCCccCCCCccceeeeeCCceEEEcCC
Q psy3351 198 GLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSA 237 (276)
Q Consensus 198 ~~~~~dfeLLCpdGtr~pv~~~~~Cnl~~vP~~aVvt~~~ 237 (276)
....++||+||-++.. -.|.++.=+.+|.+||++-.+
T Consensus 42 e~~~~~yEVL~~~~~~---~~Wv~~~~g~iP~~av~~G~~ 78 (119)
T PF11901_consen 42 EHSKTNYEVLCGDDNF---YEWVPSSDGNIPPNAVVGGRT 78 (119)
T ss_pred eEEeceEEeecCCCCc---cEEEECCCCCcCCCcEEcccc
Confidence 3457789999988753 356666668899999998443
No 11
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=28.66 E-value=22 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=15.5
Q ss_pred ccCCcCCCCccCcCCCCCCCC
Q psy3351 2 KKNSLPDLTHISHLRGKKACF 22 (276)
Q Consensus 2 kk~s~~~i~~~~dLkGkksCH 22 (276)
|+++ +|++|+||+|||-=-
T Consensus 124 r~d~--~Ikti~DL~GKrV~i 142 (321)
T COG2358 124 RKDA--GIKTIADLKGKRVAI 142 (321)
T ss_pred ecCC--CcceehhcCCCEEee
Confidence 5565 799999999999654
No 12
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=27.25 E-value=27 Score=31.51 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=19.9
Q ss_pred CCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCC
Q psy3351 8 DLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGG 43 (276)
Q Consensus 8 ~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~ 43 (276)
+|++++||||||-=.+ ..+.+..+-+..|...|+
T Consensus 91 ~I~s~~DLkGK~Igv~--~~s~~~~~l~~~L~~~Gl 124 (300)
T TIGR01729 91 GIEKPEDLKGKNVAVP--FVSTTHYSLLAALKHWKT 124 (300)
T ss_pred CCCChhHcCCCEEEeC--CCCcHHHHHHHHHHHcCC
Confidence 6899999999994222 123334444455554543
No 13
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=25.59 E-value=48 Score=30.09 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCccCcCCCCCCCCCCCCCCCcchHhHHHHHhcCCcc
Q psy3351 8 DLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGME 45 (276)
Q Consensus 8 ~i~~~~dLkGkksCHtG~g~taGW~~Pv~~L~~~~~i~ 45 (276)
.|.+++||||||--.+..+.+. ..-+.+++.+..+.
T Consensus 127 ~i~~~adlkGk~vg~~~~~~~~--~~~l~~~L~~~Gl~ 162 (335)
T COG0715 127 GIKSVADLKGKKVGVPFGGSTS--DFLLRYALAKAGLD 162 (335)
T ss_pred CcccccCCCCceEEEeCCCchH--HHHHHHHHHHcCCC
Confidence 6788999999999888776544 23344445544443
No 14
>KOG3889|consensus
Probab=20.67 E-value=44 Score=32.94 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=17.2
Q ss_pred CCccCeEEecCCCCCcc-CCCCccceeeee
Q psy3351 199 LTKENFELLCTDGTRQP-VDNYQSCNWGQV 227 (276)
Q Consensus 199 ~~~~dfeLLCpdGtr~p-v~~~~~Cnl~~v 227 (276)
..+++|++||.---.-+ |.+...|+...+
T Consensus 234 ~~Pe~feiLc~v~i~heYiE~~ge~h~H~v 263 (371)
T KOG3889|consen 234 ESPEDFEILCNVKISHEYIEGSGESHIHSV 263 (371)
T ss_pred hChHhhhHhhcCccchhhhcCCCcccceee
Confidence 35789999996422111 233356777766
Done!