RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3351
(276 letters)
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 118 bits (295), Expect = 4e-30
Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 78/259 (30%)
Query: 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYF 60
+KK ++ L+G K+C G+ AGW +P+ L +V +F
Sbjct: 98 VKKGGS---FQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFL-NWTGPPEPIEAAVARFF 153
Query: 61 GPSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAF 120
SC A ++ LC LC G
Sbjct: 154 SASCVPGADKGQF-------PNLCRLCAGTGE---------------------------- 178
Query: 121 LKHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVD-KGEVA 179
+ C +S Y +GAF+CL D G+VA
Sbjct: 179 --------------NKCAFSSQEP-------------YFSY----SGAFKCLRDGAGDVA 207
Query: 180 FLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKS 239
F++ +TV E + + ++ +ELLC D TR+PVD ++ C+ +VPS+AV+ S
Sbjct: 208 FIRESTVFEDLSDEAE-----RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNG 262
Query: 240 TQIRRYYQQFLIKTVQLFG 258
+ L + + FG
Sbjct: 263 KEDA--IWNLLRQAQEKFG 279
Score = 100 bits (249), Expect = 5e-24
Identities = 66/251 (26%), Positives = 96/251 (38%), Gaps = 83/251 (33%)
Query: 12 ISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNALIN 71
+ ++GKK+C V AGW IP+ +L G C YF SCA +
Sbjct: 450 WNSVKGKKSCHTAVDRTAGWNIPMGLLFNQTG----SCK-----FDEYFSQSCAPGS--- 497
Query: 72 KYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFLKHTTVQEMIE 131
D LC LCIG +G +C+ + E
Sbjct: 498 ------DPRSNLCALCIG--------------DEQGENKCVPNSNE-------------- 523
Query: 132 GRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLV-DKGEVAFLKHTTVQEMI 190
+Y G TGAFRCL + G+VAF+K TV +
Sbjct: 524 -------------------------RYYGY----TGAFRCLAENAGDVAFVKDVTVLQNT 554
Query: 191 EGRID---AYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKSTQIRRYYQ 247
+G + A L +F LLC DG R+PV +SC+ P++AV++ K +++
Sbjct: 555 DGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLK---- 610
Query: 248 QFLIKTVQLFG 258
Q L+ FG
Sbjct: 611 QVLLHQQAKFG 621
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal
transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2
PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A*
1iq7_A*
Length = 686
Score = 109 bits (273), Expect = 3e-27
Identities = 72/252 (28%), Positives = 105/252 (41%), Gaps = 81/252 (32%)
Query: 10 THISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNAL 69
+ ++L+GKK+C VG AGWVIP+ ++ G + YF CA
Sbjct: 443 VNWNNLKGKKSCHTAVGRTAGWVIPMGLIHNRTG---------TCNFDEYFSEGCA---- 489
Query: 70 INKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFLKHTTVQEM 129
P + RLC+LC G G +C+ E
Sbjct: 490 -----PGSPPNSRLCQLCQGS-------------GGIPPEKCVASSHE------------ 519
Query: 130 IEGRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVDKGEVAFLKHTTVQEM 189
+Y G TGA RCLV+KG+VAF++H+TV+E
Sbjct: 520 ---------------------------KYFGY----TGALRCLVEKGDVAFIQHSTVEEN 548
Query: 190 IEGRIDAY---GLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKSTQIRRYY 246
G+ A L ++FELLCTDG R V +Y+ CN +VP++AV+ K+ +IR
Sbjct: 549 TGGKNKADWAKNLQMDDFELLCTDGRRANVMDYRECNLAEVPTHAVVVRPEKANKIR--- 605
Query: 247 QQFLIKTVQLFG 258
L + + FG
Sbjct: 606 -DLLERQEKRFG 616
Score = 104 bits (259), Expect = 2e-25
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEV--IDCNNHVKSVIN 58
+KK + ++ L+GK +C G+G AGW IP+ LI G +E I+ + ++V
Sbjct: 98 VKKGTEF---TVNDLQGKTSCHTGLGRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAVAK 154
Query: 59 YFGPSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVD-KGE 117
+F SC P +LC C G P KC PY+G+ GAF CL D KG+
Sbjct: 155 FFSASCV---------PGATIEQKLCRQCKGD-PKTKCARNAPYSGYSGAFHCLKDGKGD 204
Query: 118 VAFLKHTTVQEMIEGRID 135
VAF+KHTTV E + D
Sbjct: 205 VAFVKHTTVNENAPDQKD 222
Score = 75.4 bits (184), Expect = 2e-15
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 167 GAFRCLVD-KGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWG 225
GAF CL D KG+VAF+KHTTV E + K+ +ELLC DG+RQPVDNY++CNW
Sbjct: 193 GAFHCLKDGKGDVAFVKHTTVNENAPDQ-------KDEYELLCLDGSRQPVDNYKTCNWA 245
Query: 226 QVPSNAVMTTSAKSTQIRRYYQQFLIKTVQLFG 258
+V ++AV+ + FL K FG
Sbjct: 246 RVAAHAVVARDDNKVED---IWSFLSKAQSDFG 275
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 108 bits (270), Expect = 8e-27
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 15/134 (11%)
Query: 10 THISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNAL 69
++ LRGKK+C G+G AGW IP+ +L + K+V N+F SCA A
Sbjct: 126 FQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDL---PEPRKPLEKAVANFFSGSCAPCAD 182
Query: 70 INKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVD-KGEVAFLKHTTVQE 128
G + +LC+LC PG C+T + Y G+ GAF+CL D G+VAF+KH+T+ E
Sbjct: 183 -------GTDFPQLCQLC----PGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFE 231
Query: 129 MIEGRIDACKYSFL 142
+ + D +Y L
Sbjct: 232 NLANKADRDQYELL 245
Score = 102 bits (254), Expect = 1e-24
Identities = 69/250 (27%), Positives = 98/250 (39%), Gaps = 84/250 (33%)
Query: 12 ISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNALIN 71
+L+GKK+C VG AGW IP+ +L C +F CA
Sbjct: 460 WDNLKGKKSCHTAVGRTAGWNIPMGLLYNKIN----HCR-----FDEFFSEGCA------ 504
Query: 72 KYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFLKHTTVQEMIE 131
P LC+LC+G G C + E
Sbjct: 505 ---PGSKKDSSLCKLCMGS----------------GLNLCEPNNKE-------------- 531
Query: 132 GRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVDKGEVAFLKHTTVQEMIE 191
Y G TGAFRCLV+KG+VAF+KH TV +
Sbjct: 532 -------------------------GYYGY----TGAFRCLVEKGDVAFVKHQTVPQNTG 562
Query: 192 GRID---AYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKSTQIRRYYQQ 248
G+ A L ++++ELLC DGTR+PV+ Y +C+ + P++AV+T K + +
Sbjct: 563 GKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACV----HK 618
Query: 249 FLIKTVQLFG 258
L + LFG
Sbjct: 619 ILRQQQHLFG 628
Score = 78.1 bits (191), Expect = 2e-16
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 167 GAFRCLVD-KGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWG 225
GAF+CL D G+VAF+KH+T+ E + + D ++ +ELLC D TR+PVD Y+ C+
Sbjct: 209 GAFKCLKDGAGDVAFVKHSTIFENLANKAD-----RDQYELLCLDNTRKPVDEYKDCHLA 263
Query: 226 QVPSNAVMTTSAKSTQIRRYYQQFLIKTVQLFGGPVPPQ----RTQGKNVILF 274
QVPS+ V+ + L + + FG + + +LF
Sbjct: 264 QVPSHTVVAR--SMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLF 314
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily,
lyase inhibitor; 2.40A {Mus musculus}
Length = 687
Score = 108 bits (269), Expect = 1e-26
Identities = 78/281 (27%), Positives = 110/281 (39%), Gaps = 90/281 (32%)
Query: 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYF 60
+KK+ +T L+GKK+C VGT GW +P+ ++ G C +F
Sbjct: 439 VKKSD-VGIT-WKSLQGKKSCHTAVGTSEGWNVPMGLIYDQTG----SCK-----FDAFF 487
Query: 61 GPSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAF 120
SCA P D LC LC+G G A C + E
Sbjct: 488 SRSCA---------PGSDPDSPLCALCVG--------------GNNPAHMCAANNAE--- 521
Query: 121 LKHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVDKGEVAF 180
Y G +GA RCLV+KG+VAF
Sbjct: 522 ------------------------------------GYHGS----SGALRCLVEKGDVAF 541
Query: 181 LKHTTVQEMIEGRID---AYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSA 237
+KH TV + +G+ A GL E+FELLC DGTR+PV QSC+ +VP+ AV +
Sbjct: 542 MKHPTVLQNTDGKNPEPWAKGLKHEDFELLCLDGTRKPVTEAQSCHLARVPNRAVFSRKD 601
Query: 238 KSTQIRRYYQQFLIKTVQLFGGPVPPQRT------QGKNVI 272
K+ +R + L +LFG K+++
Sbjct: 602 KADFVR----RILFNQQELFGRNGFEYMMFQMFESSAKDLL 638
Score = 106 bits (264), Expect = 5e-26
Identities = 63/258 (24%), Positives = 96/258 (37%), Gaps = 85/258 (32%)
Query: 2 KKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFG 61
KK + ++ LRGKK+C G+G AGW +P+ L+ +G + + +F
Sbjct: 108 KKGTG---FQLNQLRGKKSCHTGLGWSAGWYVPLSTLLPSG--------SRETAAATFFS 156
Query: 62 PSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFL 121
SC A + LC+LC G+
Sbjct: 157 SSCVPCADGKMF-------PSLCQLCAGKGT----------------------------- 180
Query: 122 KHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVD-KGEVAF 180
D C S Y G GA +CL D +V+F
Sbjct: 181 -------------DKCACSSREP-------------YFGS----WGALKCLQDGTADVSF 210
Query: 181 LKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKST 240
+KH TV E + + D ++ +ELLC D TR+PV+ Y+ C +VPS+ V+ S
Sbjct: 211 VKHLTVFEAMPTKAD-----RDQYELLCMDNTRRPVEEYEQCYLARVPSHVVVARSVDGK 265
Query: 241 QIRRYYQQFLIKTVQLFG 258
+ Q+ L + FG
Sbjct: 266 EDS--IQELLRVAQEHFG 281
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 107 bits (268), Expect = 1e-26
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYF 60
+KK S + L+G+K+C G+G AGW+IP+ +L +V +F
Sbjct: 98 VKKGSNF---QLDQLQGRKSCHTGLGRSAGWIIPMGILRPYLSWTE-SLEPLQGAVAKFF 153
Query: 61 GPSCAVNALINKYNPIGDNSDRLCELCIGRVPGE-KCTTADPYAGFEGAFRCLVD-KGEV 118
SC Y LC+LC G + C++ +PY G+ GAF+CL D G+V
Sbjct: 154 SASCVPCIDRQAY-------PNLCQLCKGEGENQCACSSREPYFGYSGAFKCLQDGAGDV 206
Query: 119 AFLKHTTVQEMIEGRIDACKYSFL 142
AF+K TTV E + + D +Y L
Sbjct: 207 AFVKETTVFENLPEKADRDQYELL 230
Score = 98.9 bits (245), Expect = 2e-23
Identities = 71/251 (28%), Positives = 100/251 (39%), Gaps = 83/251 (33%)
Query: 12 ISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNALIN 71
+ L+ KK+C V AGW IP+ +++ G D +F SCA
Sbjct: 448 WNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFD---------EFFSQSCA------ 492
Query: 72 KYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFLKHTTVQEMIE 131
P D RLC LC G +G +C+ + E
Sbjct: 493 ---PGADPKSRLCALCAG--------------DDQGLDKCVPNSKE-------------- 521
Query: 132 GRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLV-DKGEVAFLKHTTVQEMI 190
+Y G TGAFRCL D G+VAF+K+ TV E
Sbjct: 522 -------------------------KYYGY----TGAFRCLAEDVGDVAFVKNDTVWENT 552
Query: 191 EGRIDAY---GLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKSTQIRRYYQ 247
G A L +E+F LLC DGTR+PV QSC+ P++AV++ S ++ + +
Sbjct: 553 NGESTADWAKNLNREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHV----K 608
Query: 248 QFLIKTVQLFG 258
Q L+ LFG
Sbjct: 609 QVLLHQQALFG 619
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1-
butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB;
1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A*
3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A*
2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A*
2dwa_A* 2dwh_A* ...
Length = 335
Score = 104 bits (259), Expect = 3e-26
Identities = 70/251 (27%), Positives = 100/251 (39%), Gaps = 83/251 (33%)
Query: 12 ISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNALIN 71
+ L+ KK+C V AGW IP+ +++ G D +F SCA
Sbjct: 107 WNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFD---------EFFSQSCA------ 151
Query: 72 KYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFLKHTTVQEMIE 131
P D RLC LC G +G +C+ + E
Sbjct: 152 ---PGADPKSRLCALCAG--------------DDQGLDKCVPNSKE-------------- 180
Query: 132 GRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVD-KGEVAFLKHTTVQEMI 190
+Y G TGAFRCL + G+VAF+K+ TV E
Sbjct: 181 -------------------------KYYGY----TGAFRCLAEDVGDVAFVKNDTVWENT 211
Query: 191 EGRID---AYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKSTQIRRYYQ 247
G A L +E+F LLC DGTR+PV QSC+ P++AV++ S ++ + +
Sbjct: 212 NGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHV----E 267
Query: 248 QFLIKTVQLFG 258
Q L+ LFG
Sbjct: 268 QVLLHQQALFG 278
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A
{Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A
1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C*
1z6v_A 1z6w_A
Length = 334
Score = 103 bits (257), Expect = 5e-26
Identities = 60/264 (22%), Positives = 94/264 (35%), Gaps = 78/264 (29%)
Query: 2 KKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFG 61
KK ++ L+G K+C G+ AGW +P+ L +V +F
Sbjct: 100 KKGGS---FQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDWTGPPEPIE-AAVARFFS 155
Query: 62 PSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAFL 121
SC A ++ LC LC G G +C E
Sbjct: 156 ASCVPGADKGQF-------PNLCRLCAG----------------TGENKCAFSSQE---- 188
Query: 122 KHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVD-KGEVAF 180
Y +GAF+CL D G+VAF
Sbjct: 189 -----------------------------------PYFSY----SGAFKCLRDGAGDVAF 209
Query: 181 LKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSAKST 240
+ +TV E + + ++ +ELLC D TR+PVD ++ C+ +VPS+AV+ S
Sbjct: 210 IGESTVFEDLSDEAE-----RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGK 264
Query: 241 QIRRYYQQFLIKTVQLFGGPVPPQ 264
+ + L + + FG P+
Sbjct: 265 EDAIW--NLLRQAQEKFGKDKSPK 286
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP
metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B
1suv_E
Length = 342
Score = 103 bits (257), Expect = 7e-26
Identities = 70/261 (26%), Positives = 102/261 (39%), Gaps = 86/261 (32%)
Query: 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYF 60
+KK++ +L+GKK+C VG AGW IP+ +L +F
Sbjct: 95 VKKSA--SDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHC---------RFDEFF 143
Query: 61 GPSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVAF 120
CA P LC+LC+G G C + E
Sbjct: 144 SEGCA---------PGSKKDSSLCKLCMG----------------SGLNLCEPNNKE--- 175
Query: 121 LKHTTVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQYSGGLIEGTGAFRCLVDKGEVAF 180
Y G TGAFRCLV+KG+VAF
Sbjct: 176 ------------------------------------GYYGY----TGAFRCLVEKGDVAF 195
Query: 181 LKHTTVQEMIEGRID---AYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSNAVMTTSA 237
+KH TV + G+ A L ++++ELLC DGTR+PV+ Y +C+ + P++AV+T
Sbjct: 196 VKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKD 255
Query: 238 KSTQIRRYYQQFLIKTVQLFG 258
K + + L + LFG
Sbjct: 256 KEACV----HKILRQQQHLFG 272
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus}
SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A
1gvc_A*
Length = 332
Score = 96.8 bits (240), Expect = 1e-23
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
Query: 1 MKKNSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEV--IDCNNHVKSVIN 58
+KK + ++ L+GK +C G+G AGW IP+ L+ G +E I+ + ++V
Sbjct: 98 VKKGTE---FTVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAK 154
Query: 59 YFGPSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVD-KGE 117
+F SC P +LC C G KC PY+G+ GAF CL D KG+
Sbjct: 155 FFSASCV---------PGATIEQKLCRQCKGDPK-TKCARNAPYSGYSGAFHCLKDGKGD 204
Query: 118 VAFLKHTTVQEMIEGRID 135
VAF+KHTTV E + D
Sbjct: 205 VAFVKHTTVNENAPDQKD 222
Score = 76.0 bits (186), Expect = 4e-16
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 166 TGAFRCLVD-KGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNW 224
+GAF CL D KG+VAF+KHTTV E + K+ +ELLC DG+RQPVDNY++CNW
Sbjct: 192 SGAFHCLKDGKGDVAFVKHTTVNENAPDQ-------KDEYELLCLDGSRQPVDNYKTCNW 244
Query: 225 GQVPSNAVMTTSAKSTQIRRYYQQFLIKTVQLFGGPVPPQ 264
+V ++AV+ + FL K FG
Sbjct: 245 ARVAAHAVVARDDNKVED---IWSFLSKAQSDFGVDTKSD 281
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo
sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A
2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A
1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A
...
Length = 327
Score = 95.3 bits (236), Expect = 4e-23
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 15/134 (11%)
Query: 10 THISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSCAVNAL 69
++ LRGKK+C G+G AGW IP+ +L + K+V N+F SCA A
Sbjct: 107 FQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDL---PEPRKPLEKAVANFFSGSCAPCAD 163
Query: 70 INKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVD-KGEVAFLKHTTVQE 128
G + +LC+LC PG C+T + Y G+ GAF+CL D G+VAF+KH+T+ E
Sbjct: 164 -------GTDFPQLCQLC----PGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFE 212
Query: 129 MIEGRIDACKYSFL 142
+ + D +Y L
Sbjct: 213 NLANKADRDQYELL 226
Score = 77.2 bits (189), Expect = 2e-16
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 166 TGAFRCLVD-KGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNW 224
+GAF+CL D G+VAF+KH+T+ E + + D + +ELLC D TR+PVD Y+ C+
Sbjct: 189 SGAFKCLKDGAGDVAFVKHSTIFENLANKADR-----DQYELLCLDNTRKPVDEYKDCHL 243
Query: 225 GQVPSNAVMTTSAKSTQIRRYYQQFLIKTVQLFGGPVPPQ-----RTQGKNVIL 273
QVPS+ V+ + L + + FG + GK+++
Sbjct: 244 AQVPSHTVVA--RSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLF 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 32/249 (12%), Positives = 62/249 (24%), Gaps = 63/249 (25%)
Query: 60 FGPSCAVNALINKYNPIGDNSDRLCELCIGRVPGEKCTTADPYAGFEGAFRCLVDKGEVA 119
G + + Y ++ L + C + + +D +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-----CNSPETVLEMLQKLLYQIDPNWTS 215
Query: 120 FLKHT-TVQEMIEGRIDACKYSFLGKELKMSFFYFLLLQ--YSGGLIEGTGAF--RC--L 172
H+ ++ I + K + L+L + AF C L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAWN---AFNLSCKIL 269
Query: 173 V---DKGEVAFLKHTTVQEMIEGRIDAYGLTK-ENFELL---------------CT---- 209
+ K FL T + LT E LL T
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 210 ------DGTRQPVDNYQSCNWGQVPSNAVMTTSAKS------TQIRRYYQQFLI--KTVQ 255
+ R + + NW V + + T S + R+ + + + +
Sbjct: 329 RLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA- 385
Query: 256 LFGGPVPPQ 264
+P
Sbjct: 386 ----HIPTI 390
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.027
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 19/97 (19%)
Query: 5 SLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVIDCNNHVKSVINYFGPSC 64
S+ L + RG A + G + I G + ++ V+ G
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 65 -----AVNALINKYN-P-----I-GDNS--DRLCELC 87
VN YN GD D + +
Sbjct: 1838 GWLVEIVN-----YNVENQQYVAAGDLRALDTVTNVL 1869
Score = 31.6 bits (71), Expect = 0.35
Identities = 40/216 (18%), Positives = 67/216 (31%), Gaps = 66/216 (30%)
Query: 45 EVID-CNNHVK-------SVINYFGPSCAVNALINKYNPIGDNSDRLCELCI----GRVP 92
+ ++ N+H+ S++N G V + G L L + + P
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVN--GAKNLVVS--------GPPQS-LYGLNLTLRKAKAP 399
Query: 93 GEKCTTADPYAGFEGAFRCLVDKGEVAFLK-----HT----TVQEMIEGRIDACKYSFLG 143
+ P++ R L K FL H+ ++I + SF
Sbjct: 400 SGLDQSRIPFSE-----RKL--KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 144 KELKMSFFYFL----LLQYSGGLIEGTGAFRCL----VDKGEVAFLKHTTVQEMIEGRID 195
K++++ + L SG + E C+ V K T + + G
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISE--RIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 196 AYG-LTKENFELLCTDGT-----------RQPVDNY 219
G LT N DGT P D+Y
Sbjct: 511 GLGVLTHRN-----KDGTGVRVIVAGTLDINPDDDY 541
Score = 27.7 bits (61), Expect = 5.8
Identities = 11/71 (15%), Positives = 16/71 (22%), Gaps = 29/71 (40%)
Query: 226 QVPSNAVMTTSAKSTQIRRYYQQF--------------LIKTVQ--------LFGGPVPP 263
++ T I+ Y L + V +FGG
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---- 162
Query: 264 QRTQGKNVILF 274
QG F
Sbjct: 163 ---QGNTDDYF 170
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural
genomics, joint center for structural genomics; HET:
UNL; 1.97A {Pseudomonas aeruginosa}
Length = 310
Score = 29.4 bits (66), Expect = 1.1
Identities = 5/42 (11%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 4 NSLPDLTHISHLRGKKACFAGVGTQAGWVIPVDVLIRNGGME 45
+SL D+ +++ + + +G+++P + ++
Sbjct: 105 DSLEDM--LANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVD 144
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding,
regulation of transcription, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Length = 72
Score = 27.1 bits (60), Expect = 1.5
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 223 NWGQVPSNAVMTTSAKSTQIRRYYQQFLIKTVQL-FGGPVPPQRT 266
W ++ S + + + Q++ Y +Q+ V+ P Q+T
Sbjct: 30 RWTKI-SKLIGSRTV--LQVKSYARQYFKNKVKCGLDKETPNQKT 71
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 29.0 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 106 EGAFRCLVDKGEVAFLKHTTVQEMIEGRIDACKYSFLGKELKMSFFYF 153
EG R KG+ A+L +T+ E IE R C +G L +
Sbjct: 679 EGVARVRKSKGKYAYLLESTMNEYIEQRKP-CDTMKVGGNLDSKGYGI 725
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 27.9 bits (63), Expect = 4.0
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 168 AFRCLVDKGEVAFLKHTTVQEMIEGRIDAYGLTKENFELLC 208
++R ++ K ++ E +D G+ +E LL
Sbjct: 38 SYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLS 78
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 27.6 bits (61), Expect = 4.6
Identities = 7/34 (20%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 14 HLRGKKACFAGVGTQAGWVIPVDVLIRNGGMEVI 47
L+GK AC G+++ + ++++ G++ +
Sbjct: 332 KLQGKTACLYVGGSRSHTYMN---MLKSFGVDSL 362
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 27.3 bits (61), Expect = 5.6
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 186 VQEMIEGRIDAYGLTKENFELLCTDGTRQPVDNYQSCNWGQVPSN 230
+ E +I E F L T+ D + P N
Sbjct: 11 LDEAQSKKITKEEFANE-FLKLKRQSTKYKADKTYPTTVAEKPKN 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,258,461
Number of extensions: 249555
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 43
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.4 bits)